Citrus Sinensis ID: 009114
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LKS5 | 700 | Long chain acyl-CoA synth | yes | no | 0.996 | 0.772 | 0.732 | 0.0 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.981 | 0.760 | 0.788 | 0.0 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.830 | 0.676 | 0.421 | 1e-107 | |
| Q9JID6 | 698 | Long-chain-fatty-acid--Co | yes | no | 0.845 | 0.657 | 0.412 | 1e-101 | |
| P33124 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.784 | 0.611 | 0.453 | 1e-100 | |
| Q91WC3 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.784 | 0.611 | 0.451 | 3e-99 | |
| Q9UKU0 | 697 | Long-chain-fatty-acid--Co | yes | no | 0.784 | 0.611 | 0.458 | 5e-99 | |
| P33121 | 698 | Long-chain-fatty-acid--Co | no | no | 0.845 | 0.657 | 0.404 | 2e-98 | |
| P41216 | 699 | Long-chain-fatty-acid--Co | no | no | 0.841 | 0.653 | 0.419 | 3e-98 | |
| P18163 | 699 | Long-chain-fatty-acid--Co | no | no | 0.841 | 0.653 | 0.406 | 9e-97 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function desciption |
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Score = 869 bits (2246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/545 (73%), Positives = 472/545 (86%), Gaps = 4/545 (0%)
Query: 3 STAAQRRLKAIHGHL-LCADDSSSSQLRHNPTAGE---YALEQGYSVVLPEKLDTGKWNV 58
++ QRRL+ I H+ + SS L N TA + E YSVVLPEKLDTGKWNV
Sbjct: 4 ASPEQRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNV 63
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSP KLVSRFPDHPEIGT HDNFV AV+T+ + KYLGTRVR DGT+GEY WMTYGE
Sbjct: 64 YRSKRSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGE 123
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
A + R +GSGL++HG+++G C+GLYF+NRPEWL+VDHAC+AYSF+SVPLYDTLGPDAVK
Sbjct: 124 AASERQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVK 183
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
++VNHA++QA+FCVPQTLN LLS L+E+P++RLIVV+GG D+ +PSLP TGV I++Y
Sbjct: 184 FVVNHANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQK 243
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
LLSQGRS+L PFSPPKP+D+ATICYTSGTTGTPKG VL+HGNLIA+VAG+++ +F+PSD
Sbjct: 244 LLSQGRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSD 303
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQ+M VY GVAVGFYQGD KLMDD A LRPT+FCSVPRLYNRIY
Sbjct: 304 VYISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIY 363
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
GITSAV++SG +++RLF AYN+KKQA+++G+ PS WD+LVFNKIK+KLGGRVRFMGS
Sbjct: 364 DGITSAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGS 423
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV+DFL+ICFG V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACE+KLVD
Sbjct: 424 GASPLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVD 483
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IFKGYYKDE QT+E++D DGW HTGDIG+W+PGGRL
Sbjct: 484 VPEMNYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRL 543
Query: 539 KIIDR 543
KIIDR
Sbjct: 544 KIIDR 548
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
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Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/534 (78%), Positives = 486/534 (91%), Gaps = 1/534 (0%)
Query: 10 LKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLV 69
+ AIH HL+ + SS LR NPTAGE+ L+ GYSVVLPEKL+TG WNVYRS++SP KLV
Sbjct: 16 INAIHSHLVTSS-RSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSAKSPFKLV 74
Query: 70 SRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSG 129
SRFPDHP+I T HDNF AV FRDYKYLGTRVRVDGTVG+YKWMTYGEAGTART +GSG
Sbjct: 75 SRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSG 134
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189
L++HGI GS +G+YF+NRPEWLIVDHACS+YS++SVPLYDTLGPDAVK+IVNHA+VQA+
Sbjct: 135 LVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAI 194
Query: 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
FCV +TLNSLLSCLSE+P+VRL+VV+GG+ + +PSLP ++GV++++YS LL+QGRSN Q
Sbjct: 195 FCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQR 254
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
F PPKPDDVATICYTSGTTGTPKG VL+H NLIA+VAG++ KF+ SDVYISYLPLAHI
Sbjct: 255 FFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYISYLPLAHI 314
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
YERANQ++TVY GVAVGFYQGDNMKL+DD+AALRPTVF SVPRLYNRIYAGI +AV+TSG
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
GL+ERLFNAAYNAKKQA+L+GK+ SP+WDRLVFNKIKD+LGGRVRFM SGASPLSP+V++
Sbjct: 375 GLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVME 434
Query: 430 FLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FLK+CFGGRVTEGYGMTETSC+IS +DEGDNL+GHVGSPN ACE+KLVDVPEMNYTS DQ
Sbjct: 435 FLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQ 494
Query: 490 PCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
P PRGEICVRGP+IF GYYKDEIQTKEVIDEDGW HTGDIG+W+PGGRLKIIDR
Sbjct: 495 PHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDR 548
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
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Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/465 (42%), Positives = 284/465 (61%), Gaps = 14/465 (3%)
Query: 86 VRAVDTFRDYKYLGTR-VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLY 144
V ++ D +LG R + DG G+YKW++Y +A +GS L+ G++KG IG++
Sbjct: 59 VYRINKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIF 118
Query: 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS 204
+NRPEW++ D A +S + V LY TLG +A++Y+VNH+ + + C + + +LS
Sbjct: 119 SINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILSMPG 178
Query: 205 EVPTVRLIVVIGGIDDQIPSLPI-----TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVA 259
T++ IV D +P + V++ S+ G N P P+D+
Sbjct: 179 T--TIKTIVSY----DPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPEDLC 232
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPLAHIYERANQVMT 318
T+ YTSG+TG PKG +L+H N+++ VAGA P DV++SYLPLAH +ERA +
Sbjct: 233 TLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGVIPEDVHMSYLPLAHSFERAVVSLM 292
Query: 319 VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378
Y G +GF+ G +L +D+ LRPT C PR++ R++ + V L++ LFN
Sbjct: 293 CYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNW 352
Query: 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
N+K+ A+ G +P+WD+LVF+K KD+LGGRV+F+ SG++PL P + +FL+ CF
Sbjct: 353 GLNSKQSALRLGST-TPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCP 411
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
V GYG++E S DN GHVG P +ACE+KL+DVPEMNY S D+PCPRGE+C+
Sbjct: 412 VVSGYGLSENVGGASVAYPEDNNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCI 471
Query: 499 RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
RG +FKGY+KD +TKE + EDGWFHTGDIG W G L IIDR
Sbjct: 472 RGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNENGTLSIIDR 516
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Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1 | Back alignment and function description |
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Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/480 (41%), Positives = 291/480 (60%), Gaps = 21/480 (4%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG+R + D Y+W++Y + +GS L+ G
Sbjct: 86 YDDVRTLYDVFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVEDLSECIGSALLQKG 141
Query: 135 I--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IG++ NRPEW+I++ AC AYS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 142 FQASPDQFIGIFAQNRPEWVIIEQACFAYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 201
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IVV+ ++ GV++++ + GR+N +
Sbjct: 202 KPEKARILLESVENKLTPGLKIIVVMDSYGSELVEQGKKCGVEVISLKAMEGLGRANRRK 261
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYPSDVYISYLP 305
PP+PDD+A IC+TSGTTG PKGA+++H N+++ + T+ SD++IS+LP
Sbjct: 262 PKPPEPDDLAVICFTSGTTGNPKGAMITHKNVVSDCSAFVKATEKALVLNASDIHISFLP 321
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH+YE+ Q + + G +GF+QGD LMDD+ AL+PT+F VPRL NR++ I +
Sbjct: 322 LAHMYEQLLQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFPVVPRLLNRMFDRIFAQA 381
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
T+ ++ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 382 NTT--VKRWLLDFASKRKEAELRSGIIRNNS-VWDKLIFHKIQSSLGGKVRLMVTGAAPV 438
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
S VL FL+ G + EGYG TE + S GD +GHVG+P IKLVDV EMN
Sbjct: 439 SATVLTFLRAALGCQFYEGYGQTECTAGCSLSVPGDWTAGHVGAPMPCNFIKLVDVEEMN 498
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y + GE+CV+GP +FKGY KD +T E +D+DGW HTGDIG W+P G LKIIDR
Sbjct: 499 YMA---AMGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDR 555
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Cavia porcellus (taxid: 10141) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33124|ACSL6_RAT Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/445 (45%), Positives = 273/445 (61%), Gaps = 19/445 (4%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AG--ATLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G +++ P+ DV+ SYLPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTESQWAPTCADVHFSYLPLAHMFERMVQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
D DGW HTGDIG W+P G LKIIDR
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDR 555
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q91WC3|ACSL6_MOUSE Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 201/445 (45%), Positives = 268/445 (60%), Gaps = 19/445 (4%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ +G++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFVGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP ++ YI+N A + V P LL + E P ++L++++ +D +
Sbjct: 178 YDTLGPGSISYIINTADICTVIVDKPHKATLLLEHVERKETPGLKLVILMEPFEDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + GR N PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDCGRENHHAPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY + C GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWT----CKGEGEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
D DGW HTGDIG W+P G LKIIDR
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDR 555
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9UKU0|ACSL6_HUMAN Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 204/445 (45%), Positives = 270/445 (60%), Gaps = 19/445 (4%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H + IG++ NRPEW+IV+ AC YS + VPL
Sbjct: 118 YQWLSYQEVADRAEFLGSGLLQHNCKACTDQFIGVFAQNRPEWIIVELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP A++YI+N A + V PQ LL + E P ++LI+++ ++ +
Sbjct: 178 YDTLGPGAIRYIINTADISTVIVDKPQKAVLLLEHVERKETPGLKLIILMDPFEEALKER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N Q PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GQKCGVVIKSMQAVEDCGQENHQAPVPPQPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L PT+F VPRL NR+Y I S T L+ L A K+ + SG +N S +WD
Sbjct: 358 LCPTIFPVVPRLLNRMYDKIFSQANTP--LKRWLLEFAAKRKQAEVRSGIIRNDS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGCVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP-RGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVDV E+NY + C GEICVRGP +FKGY KD +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDVEELNYWA----CKGEGEICVRGPNVFKGYLKDPDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
D DGW HTGDIG W+P G LKIIDR
Sbjct: 531 DSDGWLHTGDIGKWLPAGTLKIIDR 555
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Plays an important role in fatty acid metabolism in brain and the acyl-CoAs produced may be utilized exclusively for the synthesis of the brain lipid. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/480 (40%), Positives = 284/480 (59%), Gaps = 21/480 (4%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T ++ F R + + LG+R + D Y+W++Y + +GS LI G
Sbjct: 86 YDDVTTLYEGFQRGIQVSNNGPCLGSR-KPDQP---YEWLSYKQVAELSECIGSALIQKG 141
Query: 135 ISKG--SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
IG++ NRPEW+I++ C AYS + VPLYDTLG +A+ YIVN A + VF
Sbjct: 142 FKTAPDQFIGIFAQNRPEWVIIEQGCFAYSMVIVPLYDTLGNEAITYIVNKAELSLVFVD 201
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + +P +++IVV+ ++ GV++ + + GR+N +
Sbjct: 202 KPEKAKLLLEGVENKLIPGLKIIVVMDAYGSELVERGQRCGVEVTSMKAMEDLGRANRRK 261
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY----PSDVYISYLP 305
PP P+D+A IC+TSGTTG PKGA+++H N+++ + T+ P D IS+LP
Sbjct: 262 PKPPAPEDLAVICFTSGTTGNPKGAMVTHRNIVSDCSAFVKATENTVNPCPDDTLISFLP 321
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++ER + + + G +GF+QGD LMDD+ L+PTVF VPRL NR++ I
Sbjct: 322 LAHMFERVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFPVVPRLLNRMFDRIFGQA 381
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
T+ L+ L + A K+ + SG +N S +WDRL+F+K++ LGGRVR M +GA+P+
Sbjct: 382 NTT--LKRWLLDFASKRKEAELRSGIIRNNS-LWDRLIFHKVQSSLGGRVRLMVTGAAPV 438
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
S VL FL+ G + EGYG TE + GD +GHVG+P IKLVDV EMN
Sbjct: 439 SATVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVEEMN 498
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y + + GE+CV+GP +F+GY KD +T E +D+DGW HTGDIG W+P G LKIIDR
Sbjct: 499 YMAAEG---EGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDR 555
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 359 bits (921), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 202/482 (41%), Positives = 284/482 (58%), Gaps = 25/482 (5%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + + LG+R Y+W++Y E +GSGLI G
Sbjct: 87 YDDVRTMYDGFQRGIQVSNNGPCLGSR----KPNQPYEWISYKEVAELAECIGSGLIQKG 142
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IGL+ NRPEW+IV+ C +YS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 143 FKPCSEQFIGLFSQNRPEWVIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFAD 202
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IV++ + GV+I++ L GR N
Sbjct: 203 KPEKAKLLLEGVENKLTPCLKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVK 262
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK--FYPS--DVYISYLP 305
PP+P+D+A IC+TSGTTG PKGA+++H N+I +G T+ F S DV IS+LP
Sbjct: 263 PKPPEPEDLAIICFTSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLISFLP 322
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++E + + + G +GF+QGD LMDD+ L+PT+F VPRL NR++ I
Sbjct: 323 LAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQA 382
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
TS L+ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 383 NTS--LKRWLLDFASKRKEAELRSGIVRNNS-LWDKLIFHKIQSSLGGKVRLMITGAAPV 439
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
S VL FL+ G + EGYG TE + C +S GD +GHVG+P +KLVDV E
Sbjct: 440 SATVLTFLRTALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYVKLVDVEE 497
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNY + GE+CV+G +FKGY KD +T E +D+DGW HTGDIG W+P G LKII
Sbjct: 498 MNYLASKG---EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKII 554
Query: 542 DR 543
DR
Sbjct: 555 DR 556
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 196/482 (40%), Positives = 281/482 (58%), Gaps = 25/482 (5%)
Query: 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134
+ ++ T +D F R + D LG+R Y+W++Y + +GS LI G
Sbjct: 87 YDDVRTMYDGFQRGIQVSNDGPCLGSR----KPNQPYEWISYKQVAEMAECIGSALIQKG 142
Query: 135 ISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC- 191
S IG++ NRPEW+ ++ C YS + VPLYDTLG DA+ YIVN A + +F
Sbjct: 143 FKPCSEQFIGIFSQNRPEWVTIEQGCFTYSMVVVPLYDTLGTDAITYIVNKAELSVIFAD 202
Query: 192 VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
P+ LL + P +++IV++ D+ + GV+I+ L GR N
Sbjct: 203 KPEKAKLLLEGVENKLTPCLKIIVIMDSYDNDLVERGQKCGVEIIGLKALEDLGRVNRTK 262
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYPSDVYISYLP 305
PP+P+D+A IC+TSGTTG PKGA+++H N++ +G T+ P DV IS+LP
Sbjct: 263 PKPPEPEDLAIICFTSGTTGNPKGAMVTHQNIMNDCSGFIKATESAFIASPEDVLISFLP 322
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365
LAH++E + + + G +GF+QGD LMDD+ L+PT+F VPRL NR++ I
Sbjct: 323 LAHMFETVVECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQA 382
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
TS ++ L + A K+ + SG +N S +WD+L+F+KI+ LGG+VR M +GA+P+
Sbjct: 383 NTS--VKRWLLDFASKRKEAELRSGIVRNNS-LWDKLIFHKIQSSLGGKVRLMITGAAPV 439
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
S VL FL+ G + EGYG TE + C +S GD +GHVG+P IKLVDV +
Sbjct: 440 SATVLTFLRAALGCQFYEGYGQTECTAGCCLSL--PGDWTAGHVGAPMPCNYIKLVDVED 497
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNY + GE+CV+G +FKGY KD +T E +D+DGW HTGDIG W+P G LKII
Sbjct: 498 MNYQAAKG---EGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKII 554
Query: 542 DR 543
DR
Sbjct: 555 DR 556
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| 255552335 | 694 | Acyl-CoA synthetase [Ricinus communis] g | 1.0 | 0.782 | 0.828 | 0.0 | |
| 225432604 | 697 | PREDICTED: long chain acyl-CoA synthetas | 0.994 | 0.774 | 0.832 | 0.0 | |
| 356534226 | 696 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.780 | 0.819 | 0.0 | |
| 356574400 | 698 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.777 | 0.820 | 0.0 | |
| 357444291 | 713 | Annotation was added to scaffolds in Nov | 1.0 | 0.761 | 0.829 | 0.0 | |
| 224111218 | 705 | predicted protein [Populus trichocarpa] | 0.990 | 0.763 | 0.811 | 0.0 | |
| 357444293 | 697 | Annotation was added to scaffolds in Nov | 1.0 | 0.779 | 0.829 | 0.0 | |
| 449432710 | 695 | PREDICTED: long chain acyl-CoA synthetas | 1.0 | 0.781 | 0.799 | 0.0 | |
| 83320527 | 690 | ACS4 [Ricinus communis] | 1.0 | 0.786 | 0.766 | 0.0 | |
| 147863228 | 703 | hypothetical protein VITISV_002313 [Viti | 0.998 | 0.770 | 0.760 | 0.0 |
| >gi|255552335|ref|XP_002517212.1| Acyl-CoA synthetase [Ricinus communis] gi|83320525|gb|ABC02881.1| ACS2 [Ricinus communis] gi|223543847|gb|EEF45375.1| Acyl-CoA synthetase [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/543 (82%), Positives = 507/543 (93%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
MD +AQRR++AIHGHLL A D S S LR NPTAGE+ EQGYSVVLPEKL TGKWNVYR
Sbjct: 1 MDMDSAQRRIQAIHGHLLAARDCSPSHLRLNPTAGEFFSEQGYSVVLPEKLQTGKWNVYR 60
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S+RSPL+LVSRFPDHP+IGT HDNF R+VDTFRDYKYLGTR+RVDGTVGEYKWMTYGEAG
Sbjct: 61 SARSPLRLVSRFPDHPDIGTLHDNFARSVDTFRDYKYLGTRIRVDGTVGEYKWMTYGEAG 120
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
TART +GSGL++HGI KGS +GLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK+I
Sbjct: 121 TARTAIGSGLMHHGIPKGSSVGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKFI 180
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FCVPQTL LLS LSE+ +VRLIVV+GG+DDQ+PSLP +TGVQ++TYS LL
Sbjct: 181 VNHADVQAIFCVPQTLTPLLSFLSEISSVRLIVVVGGMDDQMPSLPSSTGVQVVTYSKLL 240
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG SNLQPF PPKP+DVATICYTSGTTGTPKGA L+HGNLIA+VAGATL TKFYPSD+Y
Sbjct: 241 SQGHSNLQPFCPPKPEDVATICYTSGTTGTPKGAALTHGNLIANVAGATLATKFYPSDIY 300
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+TVY GVAVGFYQGDN+KLMDDMAALRPT+FCSVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVLTVYYGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAG 360
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
IT+AV+TSGGLRERLFNAAYNAKKQA+L+G++PSPMWDRLVF+KIK KLGGRVRF+ SGA
Sbjct: 361 ITNAVKTSGGLRERLFNAAYNAKKQAILNGRSPSPMWDRLVFDKIKAKLGGRVRFIASGA 420
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV++FLKICFGGRV+EGYGMTETSC+IS ++EGDNL+GHVGSPN ACEIKLVDVP
Sbjct: 421 SPLSPDVMEFLKICFGGRVSEGYGMTETSCVISAMEEGDNLTGHVGSPNPACEIKLVDVP 480
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EM+YTS+DQP PRGEICVRGP++F+GY+KDE QT++VIDEDGW HTGDIG+W+P GRLKI
Sbjct: 481 EMSYTSDDQPYPRGEICVRGPIVFQGYHKDEAQTRDVIDEDGWLHTGDIGLWLPEGRLKI 540
Query: 541 IDR 543
IDR
Sbjct: 541 IDR 543
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432604|ref|XP_002277936.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Vitis vinifera] gi|297737021|emb|CBI26222.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/542 (83%), Positives = 503/542 (92%), Gaps = 2/542 (0%)
Query: 4 TAAQRRLKAIHGHLLCA--DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRS 61
+A QRRL AI L+ DD S SQL N TAGE+ EQGYSVVLPEKL+TGKWNVYRS
Sbjct: 3 SAPQRRLTAIQTQLIATAGDDRSHSQLLTNQTAGEFVSEQGYSVVLPEKLETGKWNVYRS 62
Query: 62 SRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGT 121
++SPL+LVSRFPDHPEIGT HDNFV +V+TFRDYKYLGTR+RVDGTVGEYKWMTYGEAGT
Sbjct: 63 AQSPLRLVSRFPDHPEIGTLHDNFVHSVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGT 122
Query: 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV 181
AR+ +GSGLIY+GI KGSC+GLYF+NRPEWLIVDHACSA+S++SVPLYDTLGPDAVKYIV
Sbjct: 123 ARSAIGSGLIYYGIPKGSCVGLYFINRPEWLIVDHACSAFSYVSVPLYDTLGPDAVKYIV 182
Query: 182 NHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLS 241
NHA +QA+FCVPQTLNSLLS LSE+P+VRLIVV+GGIDDQ+PSLP TTGV++++YS LL+
Sbjct: 183 NHAVLQAIFCVPQTLNSLLSFLSEIPSVRLIVVVGGIDDQMPSLPSTTGVEVVSYSKLLN 242
Query: 242 QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYI 301
QGRS QPF PPKPDDVATICYTSGTTGTPKGAVLSHGNLIA+VAGATL KFYPSDVYI
Sbjct: 243 QGRSRPQPFCPPKPDDVATICYTSGTTGTPKGAVLSHGNLIANVAGATLSVKFYPSDVYI 302
Query: 302 SYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGI 361
SYLPLAHIYERANQVMT Y GVAVGFYQGDN+KLMDDMAALRPT+FCSVPRLYNRIYAGI
Sbjct: 303 SYLPLAHIYERANQVMTAYFGVAVGFYQGDNLKLMDDMAALRPTIFCSVPRLYNRIYAGI 362
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
T+AV+TSG LRERLFNAAYNAKK+A+LSGKNPSPMWDRLVFNKIK+KLGGRVRFM SGAS
Sbjct: 363 TNAVKTSGVLRERLFNAAYNAKKRAILSGKNPSPMWDRLVFNKIKEKLGGRVRFMVSGAS 422
Query: 422 PLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPE 481
PLSPDV++FL+ICFGGR+TEGYGMTETSC+IS +DE DNL+GHVGSPN ACE+KLVDVPE
Sbjct: 423 PLSPDVMEFLRICFGGRITEGYGMTETSCVISSMDESDNLTGHVGSPNPACEVKLVDVPE 482
Query: 482 MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
MNYTSEDQP PRGEICVRGP++F GY+KDE+QT+EVIDEDGW HTGDIG+W+PGGRLKII
Sbjct: 483 MNYTSEDQPYPRGEICVRGPILFLGYHKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKII 542
Query: 542 DR 543
DR
Sbjct: 543 DR 544
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534226|ref|XP_003535658.1| PREDICTED: long chain acyl-CoA synthetase 6, peroxisomal-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/544 (81%), Positives = 499/544 (91%), Gaps = 1/544 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVY 59
MD T AAQRRLKAIH HL D S S LR NPTAGE+ EQGYSVVLPEKL TGKWNVY
Sbjct: 1 MDHTPAAQRRLKAIHAHLTATADESPSHLRSNPTAGEFFSEQGYSVVLPEKLQTGKWNVY 60
Query: 60 RSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RS RSPL+LV++FP+HPEIGT HDNFVR+VDTFRDYKYLGTRVRVDGTVGEYKW+TYGEA
Sbjct: 61 RSVRSPLQLVTKFPNHPEIGTLHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWITYGEA 120
Query: 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKY 179
GTAR+ +GSGLIYHGI KGS IGLYF+NRPEWLIVDHACS+YSF+SVPLYDTLGPDAVKY
Sbjct: 121 GTARSAIGSGLIYHGIEKGSSIGLYFINRPEWLIVDHACSSYSFVSVPLYDTLGPDAVKY 180
Query: 180 IVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
IV+HA+VQ +FCVPQTLN LLS LS++PTVRLIVV+GG+DDQIP +P +TGVQ++TYS L
Sbjct: 181 IVSHAAVQVIFCVPQTLNLLLSYLSDIPTVRLIVVVGGMDDQIPLVPSSTGVQVITYSKL 240
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L+QGRSNLQ F PPKPDD+ATICYTSGTTGTPKGA+L+HGN IASVAG+T KF PSDV
Sbjct: 241 LNQGRSNLQLFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTRDQKFGPSDV 300
Query: 300 YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359
YISYLPLAHIYERANQVMTV+ G+AVGFYQGD+MKLMDD+AALRPTVFCSVPRLYNRIYA
Sbjct: 301 YISYLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRIYA 360
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSG 419
GI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVRFM SG
Sbjct: 361 GIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMASG 420
Query: 420 ASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDV 479
ASPLSPD+++FLKICFG RVTEGYGMTE++C+IS +DEGD L GHVGSPN ACEIKLVDV
Sbjct: 421 ASPLSPDIMEFLKICFGCRVTEGYGMTESTCIISFIDEGDKLGGHVGSPNLACEIKLVDV 480
Query: 480 PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
PEMNYTS+DQP PRGEICVRGP++F+GY+KDE QT++VIDEDGW HTGDIG W+PGGRLK
Sbjct: 481 PEMNYTSDDQPNPRGEICVRGPIVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGRLK 540
Query: 540 IIDR 543
IIDR
Sbjct: 541 IIDR 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574400|ref|XP_003555336.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 957 bits (2474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/546 (82%), Positives = 500/546 (91%), Gaps = 3/546 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCAD--DSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWN 57
MD T AAQRRLKAIH HL D S S L N TAGE+ EQGYSVVLPEKL TGKWN
Sbjct: 1 MDHTPAAQRRLKAIHAHLTATATADDSPSHLESNTTAGEFFSEQGYSVVLPEKLQTGKWN 60
Query: 58 VYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 117
VYRS RSPL+LV++FP+HPEIGT HDNFVR+VDTFRDYKYLGTRVRVDGTVGEYKWMTYG
Sbjct: 61 VYRSVRSPLQLVTKFPNHPEIGTMHDNFVRSVDTFRDYKYLGTRVRVDGTVGEYKWMTYG 120
Query: 118 EAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAV 177
EAGTAR+ +GSGLIY+GI KGS IGLYF+NRPEWLIVDHACSAYSF+SVPLYDTLGPDAV
Sbjct: 121 EAGTARSAIGSGLIYYGIQKGSSIGLYFINRPEWLIVDHACSAYSFVSVPLYDTLGPDAV 180
Query: 178 KYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237
KYIV+HA VQ +FCVP+TLN LLS LS++PTVRLIVV+GG+DDQIPS+P +TGVQ++TYS
Sbjct: 181 KYIVSHAVVQVIFCVPETLNLLLSYLSDIPTVRLIVVVGGMDDQIPSVPSSTGVQVITYS 240
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS 297
LL+QGRSNLQPF PPKPDD+ATICYTSGTTGTPKGA+L+HGN IASVAG+T+ KF PS
Sbjct: 241 KLLNQGRSNLQPFCPPKPDDIATICYTSGTTGTPKGAILTHGNFIASVAGSTMDEKFGPS 300
Query: 298 DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRI 357
DVYISYLPLAHIYERANQVMTV+ G+AVGFYQGD+MKLMDD+AALRPTVFCSVPRLYNRI
Sbjct: 301 DVYISYLPLAHIYERANQVMTVHFGIAVGFYQGDSMKLMDDIAALRPTVFCSVPRLYNRI 360
Query: 358 YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMG 417
YAGIT+AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVRFM
Sbjct: 361 YAGITNAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRFMA 420
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLV 477
SGASPLSPD+++FLKICFG RVTEGYGMTE++C+IS +DEGD L GHVGSPN ACEIKLV
Sbjct: 421 SGASPLSPDIMEFLKICFGCRVTEGYGMTESTCVISCIDEGDKLGGHVGSPNLACEIKLV 480
Query: 478 DVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGR 537
DVPEMNYTS+DQP PRGEICVRGPL+F+GY+KDE QT++VIDEDGW HTGDIG W+PGGR
Sbjct: 481 DVPEMNYTSDDQPNPRGEICVRGPLVFRGYHKDEAQTRDVIDEDGWLHTGDIGTWLPGGR 540
Query: 538 LKIIDR 543
LKIIDR
Sbjct: 541 LKIIDR 546
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444291|ref|XP_003592423.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355481471|gb|AES62674.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/545 (82%), Positives = 499/545 (91%), Gaps = 2/545 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCA-DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNV 58
MD T AQRRLKAI+ HL+ A +D+SS L+ NPTAGE+ EQGYSVVLPEKL TGKWNV
Sbjct: 1 MDPTPTAQRRLKAINAHLITAVEDNSSDHLQSNPTAGEFFSEQGYSVVLPEKLQTGKWNV 60
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSPLKL++RFPDHPE+GT HDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG+
Sbjct: 61 YRSVRSPLKLMNRFPDHPEVGTLHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGK 120
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
AGTAR+ +GSGLI++GI KG+ IGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK
Sbjct: 121 AGTARSAIGSGLIHYGIPKGAGIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK 180
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
YIVNHA VQ +FCV QTLNSLLS LSE+PTVRLIVV+GGIDDQIPSLP + GVQI++Y+
Sbjct: 181 YIVNHALVQVIFCVSQTLNSLLSYLSEIPTVRLIVVVGGIDDQIPSLPSSDGVQIISYTK 240
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
L SQGRSNLQPF PPKP+DVATICYTSGTTGTPKGAVL+H N IA+VAGAT+ KF PSD
Sbjct: 241 LFSQGRSNLQPFCPPKPEDVATICYTSGTTGTPKGAVLTHENFIANVAGATIDEKFNPSD 300
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQVMTVY G+AVGFYQGDN+KLMDD+AALRPTVFCSVPRLYNRIY
Sbjct: 301 VYISYLPLAHIYERANQVMTVYFGMAVGFYQGDNLKLMDDLAALRPTVFCSVPRLYNRIY 360
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
AGI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVR M S
Sbjct: 361 AGIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRLMVS 420
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV++FLKICFGGRVTEGYGMTET+C+IS +D GD L GHVGSPN ACEIKLVD
Sbjct: 421 GASPLSPDVMEFLKICFGGRVTEGYGMTETTCVISCIDNGDRLGGHVGSPNPACEIKLVD 480
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IF+GYYKDE QT+EVIDE+GW HTGDIG WI GGRL
Sbjct: 481 VPEMNYTSDDQPNPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRL 540
Query: 539 KIIDR 543
KIIDR
Sbjct: 541 KIIDR 545
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111218|ref|XP_002315784.1| predicted protein [Populus trichocarpa] gi|222864824|gb|EEF01955.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/540 (81%), Positives = 497/540 (92%), Gaps = 2/540 (0%)
Query: 6 AQRRLKAIHGHLL--CADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSR 63
AQRR+KAIH HL+ A D S QLRHNPTAGE+ EQGYSVVLPEKL TGKWNVYRS+R
Sbjct: 11 AQRRIKAIHSHLITAAAHDDSPPQLRHNPTAGEFFSEQGYSVVLPEKLQTGKWNVYRSAR 70
Query: 64 SPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTAR 123
+PLKLVSRFPDHPEIGT HDNF R+V+TFRDYKYLGTR+RVDGTVG+YKWMT+GEAGTAR
Sbjct: 71 TPLKLVSRFPDHPEIGTLHDNFARSVETFRDYKYLGTRIRVDGTVGDYKWMTFGEAGTAR 130
Query: 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNH 183
TE+GSGLIYHGI KGS IG+YF+NRPEW+IVDHACSAYS+ISVPLYDTLGPDAVKYIVNH
Sbjct: 131 TEIGSGLIYHGIPKGSTIGIYFINRPEWMIVDHACSAYSYISVPLYDTLGPDAVKYIVNH 190
Query: 184 ASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243
A V A+FCVPQTLN LLS LSE+P+ RLIVV+GGIDDQ+PSLP +TGVQ++TYS LLSQG
Sbjct: 191 AVVHAIFCVPQTLNMLLSFLSEIPSARLIVVVGGIDDQMPSLPSSTGVQVVTYSKLLSQG 250
Query: 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303
RS+LQPF PPKP+D+ATICYTSGTTGTPKG VL+HGN IASVAG +L T + SD++ISY
Sbjct: 251 RSSLQPFHPPKPEDIATICYTSGTTGTPKGVVLTHGNFIASVAGISLSTSYSTSDIFISY 310
Query: 304 LPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITS 363
LPLAHIYER NQVMTVY GVAVGFYQGDNMKLMDDMAALRPT+FCSVPRLYNRIYAGI +
Sbjct: 311 LPLAHIYERVNQVMTVYCGVAVGFYQGDNMKLMDDMAALRPTIFCSVPRLYNRIYAGIMN 370
Query: 364 AVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
AV+ SGGLRERLFNAAYNAKKQA+L+GKNPSPMWDRLVFNKIKD+LGGRVR + SGASPL
Sbjct: 371 AVKASGGLRERLFNAAYNAKKQALLNGKNPSPMWDRLVFNKIKDRLGGRVRLIVSGASPL 430
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMN 483
SPDVL+FL+ICFGGR+ EGYGMTET+ IS +DEGD+L+GHVGSP+ +CE+KLVDVPEMN
Sbjct: 431 SPDVLEFLRICFGGRIIEGYGMTETTSPISSMDEGDSLNGHVGSPSPSCEVKLVDVPEMN 490
Query: 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
YTS+D+P PRGEIC+RGP++F+GYYKDE QT+EVI+EDGWFH+GDIG+W+PGGRLKIIDR
Sbjct: 491 YTSDDKPYPRGEICIRGPIVFQGYYKDEEQTREVINEDGWFHSGDIGLWLPGGRLKIIDR 550
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444293|ref|XP_003592424.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] gi|355481472|gb|AES62675.1| Annotation was added to scaffolds in November 2011~Long chain fatty acid-CoA ligase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/545 (82%), Positives = 499/545 (91%), Gaps = 2/545 (0%)
Query: 1 MDST-AAQRRLKAIHGHLLCA-DDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNV 58
MD T AQRRLKAI+ HL+ A +D+SS L+ NPTAGE+ EQGYSVVLPEKL TGKWNV
Sbjct: 1 MDPTPTAQRRLKAINAHLITAVEDNSSDHLQSNPTAGEFFSEQGYSVVLPEKLQTGKWNV 60
Query: 59 YRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGE 118
YRS RSPLKL++RFPDHPE+GT HDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYG+
Sbjct: 61 YRSVRSPLKLMNRFPDHPEVGTLHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGK 120
Query: 119 AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK 178
AGTAR+ +GSGLI++GI KG+ IGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVK
Sbjct: 121 AGTARSAIGSGLIHYGIPKGAGIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVK 180
Query: 179 YIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238
YIVNHA VQ +FCV QTLNSLLS LSE+PTVRLIVV+GGIDDQIPSLP + GVQI++Y+
Sbjct: 181 YIVNHALVQVIFCVSQTLNSLLSYLSEIPTVRLIVVVGGIDDQIPSLPSSDGVQIISYTK 240
Query: 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD 298
L SQGRSNLQPF PPKP+DVATICYTSGTTGTPKGAVL+H N IA+VAGAT+ KF PSD
Sbjct: 241 LFSQGRSNLQPFCPPKPEDVATICYTSGTTGTPKGAVLTHENFIANVAGATIDEKFNPSD 300
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
VYISYLPLAHIYERANQVMTVY G+AVGFYQGDN+KLMDD+AALRPTVFCSVPRLYNRIY
Sbjct: 301 VYISYLPLAHIYERANQVMTVYFGMAVGFYQGDNLKLMDDLAALRPTVFCSVPRLYNRIY 360
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
AGI +AV+TSGGL+ERLFNAAYNAK+QA+L GKNPSPMWDRLVFNKIK+KLGGRVR M S
Sbjct: 361 AGIINAVKTSGGLKERLFNAAYNAKRQALLHGKNPSPMWDRLVFNKIKEKLGGRVRLMVS 420
Query: 419 GASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVD 478
GASPLSPDV++FLKICFGGRVTEGYGMTET+C+IS +D GD L GHVGSPN ACEIKLVD
Sbjct: 421 GASPLSPDVMEFLKICFGGRVTEGYGMTETTCVISCIDNGDRLGGHVGSPNPACEIKLVD 480
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
VPEMNYTS+DQP PRGEICVRGP+IF+GYYKDE QT+EVIDE+GW HTGDIG WI GGRL
Sbjct: 481 VPEMNYTSDDQPNPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRL 540
Query: 539 KIIDR 543
KIIDR
Sbjct: 541 KIIDR 545
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432710|ref|XP_004134142.1| PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/543 (79%), Positives = 491/543 (90%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
MDS+AA+RR++AI HL+ A + SSSQL+ N TAGE+ GYSVVLPEKL TGKWNVYR
Sbjct: 1 MDSSAARRRIQAIQDHLVPASEFSSSQLQLNATAGEFFSGDGYSVVLPEKLQTGKWNVYR 60
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S+RSPLKLV RFPDHPEIGT HDNF R+ D +RDYKYLGTR+R DGTVGEYKWMTYGEAG
Sbjct: 61 SARSPLKLVDRFPDHPEIGTLHDNFTRSTDVYRDYKYLGTRIRCDGTVGEYKWMTYGEAG 120
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
TART +GSGL+ HGI KGSCIGLYF+NRPEWL+VDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 121 TARTALGSGLVNHGIPKGSCIGLYFINRPEWLVVDHACSAYSYISVPLYDTLGPDAVKYI 180
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQ +FCVPQTLNSLLS LSE+PTVRLIVV+GG+DDQIPSLP +TGVQ+LTY++LL
Sbjct: 181 VNHALVQVIFCVPQTLNSLLSFLSEIPTVRLIVVVGGVDDQIPSLPSSTGVQVLTYASLL 240
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG +N+QPF PPK DD+ATICYTSGTTGTPKGAVL+HGNLIASVAG +L KF+PSDVY
Sbjct: 241 SQGSTNIQPFCPPKSDDIATICYTSGTTGTPKGAVLTHGNLIASVAGCSLALKFFPSDVY 300
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV TVY GVAVGFYQGDNMKLMDDM ALRPT+FCSVPRLYNRIYAG
Sbjct: 301 ISYLPLAHIYERANQVSTVYFGVAVGFYQGDNMKLMDDMIALRPTIFCSVPRLYNRIYAG 360
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG L+ERLFNAAYN+K+QA+++GK+PSP+WD+LVFNKIK KLGGRVR + SGA
Sbjct: 361 IINAVKTSGVLKERLFNAAYNSKRQAIMNGKSPSPLWDKLVFNKIKAKLGGRVRVLASGA 420
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPD+L+FLKICFGG V EGYGMTETSC+IS +D D L GHVG+PN ACEIKLVDVP
Sbjct: 421 SPLSPDILEFLKICFGGVVFEGYGMTETSCVISAMDPDDTLCGHVGAPNPACEIKLVDVP 480
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTS+DQP RGEICVRGPL+FKGY+KDE+QT+E +DEDGW HTGDIG+W+ GGRLKI
Sbjct: 481 EMNYTSDDQPYSRGEICVRGPLVFKGYFKDEVQTREAVDEDGWLHTGDIGLWMQGGRLKI 540
Query: 541 IDR 543
IDR
Sbjct: 541 IDR 543
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83320527|gb|ABC02882.1| ACS4 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/544 (76%), Positives = 481/544 (88%), Gaps = 1/544 (0%)
Query: 1 MDSTAAQRRLKAIHGHLLCAD-DSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVY 59
M+ST AQRRLKAI GHL+ + D SS L+ N TA E+ Q YSVVLPEKL TGKWNVY
Sbjct: 1 MESTTAQRRLKAIRGHLISSTVDDHSSPLQANLTASEFVHNQTYSVVLPEKLQTGKWNVY 60
Query: 60 RSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119
RS RSPLKLVSRF DHPEI T HDNFVRAV+TF+DYKYLGTR+R DGTVGEY WMTYGEA
Sbjct: 61 RSVRSPLKLVSRFHDHPEIATLHDNFVRAVETFQDYKYLGTRIRQDGTVGEYTWMTYGEA 120
Query: 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKY 179
TAR +GSGL YHGI KG+C+G++FVN+PEWLIVDHAC+AYS+ISVPLYDTLGPDAVKY
Sbjct: 121 ATAREAIGSGLRYHGIQKGACVGIFFVNKPEWLIVDHACAAYSYISVPLYDTLGPDAVKY 180
Query: 180 IVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+VNHA+VQA+FCVP+T N+LLS L+E+P+V+LIVV+G +D+Q+PSLP T GV++++Y L
Sbjct: 181 VVNHANVQAIFCVPETSNALLSFLAEIPSVQLIVVVGAVDEQLPSLPSTFGVKLISYMKL 240
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L +G SN QPF PPKP+DVATICYTSGTTGTPKG VL+HG+LIASVAG L KF PSD+
Sbjct: 241 LGEGCSNRQPFIPPKPEDVATICYTSGTTGTPKGVVLTHGSLIASVAGFCLAIKFNPSDI 300
Query: 300 YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359
YISYLPLAHIYER NQ++ VY GVAVGFYQGDN+KLMDD+AALRPT+FCSVPRLYNRIY
Sbjct: 301 YISYLPLAHIYERTNQMVLVYYGVAVGFYQGDNLKLMDDLAALRPTLFCSVPRLYNRIYD 360
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSG 419
GIT AV+ SG LRERLF AAYN+KKQA++SG+NPSPMWD+LVFNKI+ KLGGRVRFMGSG
Sbjct: 361 GITKAVKASGVLRERLFRAAYNSKKQAIMSGRNPSPMWDKLVFNKIRGKLGGRVRFMGSG 420
Query: 420 ASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDV 479
ASPLSPD++DFL++CFG +V EGYGMTETSC+IS +D GDNLSGHVGSPNAACEIKLVDV
Sbjct: 421 ASPLSPDIMDFLRVCFGCQVLEGYGMTETSCVISVMDLGDNLSGHVGSPNAACEIKLVDV 480
Query: 480 PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
PEMNYT +DQP PRGEICVRGP +FKGYYKD +QT+EV D+DGW HTGDIG+W+PGGRLK
Sbjct: 481 PEMNYTLDDQPYPRGEICVRGPTVFKGYYKDGVQTREVFDDDGWMHTGDIGLWLPGGRLK 540
Query: 540 IIDR 543
IIDR
Sbjct: 541 IIDR 544
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147863228|emb|CAN82622.1| hypothetical protein VITISV_002313 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/543 (76%), Positives = 483/543 (88%), Gaps = 1/543 (0%)
Query: 1 MDSTAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYR 60
M+STA QRRLKAI GHL+ S ++ + TA E+ QGYSVVLPEKL+TGKWNVYR
Sbjct: 1 MESTA-QRRLKAIQGHLVPITHVLDSHVQTSTTASEFFHTQGYSVVLPEKLNTGKWNVYR 59
Query: 61 SSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120
S RSPLKL+SR P+HPEIGT HDNF+ A++ F+DY YLGTRVR DGTVGEYKWMTYGEAG
Sbjct: 60 SVRSPLKLISRLPEHPEIGTLHDNFMHAIEAFKDYNYLGTRVRGDGTVGEYKWMTYGEAG 119
Query: 121 TARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
T R +GSGL +HG+ +G+CIGLYF+NRPEWLIVDHACSAYS+ISVPLYDTLGPDAVKYI
Sbjct: 120 TVRLAIGSGLRHHGLLEGACIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYI 179
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
VNHA VQA+FC+P TLN+LLS LSE+P+VRL+VV+GGID+ +PSLP + V++++++ LL
Sbjct: 180 VNHADVQAIFCLPHTLNTLLSFLSEIPSVRLVVVVGGIDEHVPSLPSNSQVKLISFAKLL 239
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
SQG S+LQPF PPKP+D+ATICYTSGTTGTPKG +L+HGNLIA++AGA+L KF PSD+Y
Sbjct: 240 SQGHSDLQPFCPPKPEDIATICYTSGTTGTPKGVILTHGNLIATIAGASLTLKFCPSDIY 299
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
ISYLPLAHIYERANQV+ Y G AVGFYQGDN+KLMDD+AALRPT+FCSVPRLYNRIY+G
Sbjct: 300 ISYLPLAHIYERANQVLLPYYGGAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYSG 359
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
I +AV+TSG LR+ LFNAAYN+KKQ ++SG+NPSPMWDRLVF+KIK LGGRV FMGSGA
Sbjct: 360 IMNAVQTSGVLRKTLFNAAYNSKKQVIISGRNPSPMWDRLVFSKIKGMLGGRVHFMGSGA 419
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
SPLSPDV+DFL++CFG +V EGYGMTETSCLIS +D+GDNLSGHVGSPN ACEIKLVDVP
Sbjct: 420 SPLSPDVMDFLRVCFGCQVIEGYGMTETSCLISCMDKGDNLSGHVGSPNPACEIKLVDVP 479
Query: 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540
EMNYTSEDQP PRGEICVRGP++F+GYYKDE+QTKEVID DGW HTGDIG+W+PGGRLKI
Sbjct: 480 EMNYTSEDQPYPRGEICVRGPVLFQGYYKDEVQTKEVIDGDGWLHTGDIGLWLPGGRLKI 539
Query: 541 IDR 543
IDR
Sbjct: 540 IDR 542
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 543 | ||||||
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.994 | 0.770 | 0.787 | 1.1e-243 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.988 | 0.767 | 0.737 | 8.7e-230 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.887 | 0.722 | 0.411 | 3e-101 | |
| UNIPROTKB|F1NNV2 | 683 | ACSL5 "Uncharacterized protein | 0.780 | 0.620 | 0.454 | 3.7e-97 | |
| ZFIN|ZDB-GENE-040912-169 | 681 | acsl5 "acyl-CoA synthetase lon | 0.786 | 0.627 | 0.443 | 8.7e-95 | |
| UNIPROTKB|Q1LZF6 | 683 | ACSL5 "Acyl-CoA synthetase lon | 0.788 | 0.626 | 0.424 | 9.9e-95 | |
| ZFIN|ZDB-GENE-040801-88 | 729 | zgc:101071 "zgc:101071" [Danio | 0.788 | 0.587 | 0.429 | 1.8e-94 | |
| UNIPROTKB|D4A6Q0 | 699 | Acsl6 "Long-chain-fatty-acid-- | 0.784 | 0.609 | 0.456 | 2.3e-94 | |
| UNIPROTKB|E9PSJ2 | 694 | Acsl6 "Long-chain-fatty-acid-- | 0.784 | 0.613 | 0.456 | 2.3e-94 | |
| UNIPROTKB|F1LQF8 | 724 | Acsl6 "Long-chain-fatty-acid-- | 0.784 | 0.588 | 0.456 | 2.3e-94 |
| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2348 (831.6 bits), Expect = 1.1e-243, P = 1.1e-243
Identities = 426/541 (78%), Positives = 492/541 (90%)
Query: 3 STAAQRRLKAIHGHLLCADDSSSSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSS 62
S AA+RR+ AIH HL+ + SS LR NPTAGE+ L+ GYSVVLPEKL+TG WNVYRS+
Sbjct: 9 SAAARRRINAIHSHLVTSS-RSSPLLRSNPTAGEFCLDNGYSVVLPEKLNTGSWNVYRSA 67
Query: 63 RSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 122
+SP KLVSRFPDHP+I T HDNF AV FRDYKYLGTRVRVDGTVG+YKWMTYGEAGTA
Sbjct: 68 KSPFKLVSRFPDHPDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTA 127
Query: 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN 182
RT +GSGL++HGI GS +G+YF+NRPEWLIVDHACS+YS++SVPLYDTLGPDAVK+IVN
Sbjct: 128 RTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVN 187
Query: 183 HASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242
HA+VQA+FCV +TLNSLLSCLSE+P+VRL+VV+GG+ + +PSLP ++GV++++YS LL+Q
Sbjct: 188 HATVQAIFCVAETLNSLLSCLSEMPSVRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQ 247
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
GRSN Q F PPKPDDVATICYTSGTTGTPKG VL+H NLIA+VAG++ KF+ SDVYIS
Sbjct: 248 GRSNPQRFFPPKPDDVATICYTSGTTGTPKGVVLTHANLIANVAGSSFSVKFFSSDVYIS 307
Query: 303 YLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
YLPLAHIYERANQ++TVY GVAVGFYQGDNMKL+DD+AALRPTVF SVPRLYNRIYAGI
Sbjct: 308 YLPLAHIYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGII 367
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+AV+TSGGL+ERLFNAAYNAKKQA+L+GK+ SP+WDRLVFNKIKD+LGGRVRFM SGASP
Sbjct: 368 NAVKTSGGLKERLFNAAYNAKKQALLNGKSASPIWDRLVFNKIKDRLGGRVRFMTSGASP 427
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
LSP+V++FLK+CFGGRVTEGYGMTETSC+IS +DEGDNL+GHVGSPN ACE+KLVDVPEM
Sbjct: 428 LSPEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEM 487
Query: 483 NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
NYTS DQP PRGEICVRGP+IF GYYKDEIQTKEVIDEDGW HTGDIG+W+PGGRLKIID
Sbjct: 488 NYTSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIID 547
Query: 543 R 543
R
Sbjct: 548 R 548
|
|
| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2217 (785.5 bits), Expect = 8.7e-230, P = 8.7e-230
Identities = 399/541 (73%), Positives = 470/541 (86%)
Query: 7 QRRLKAIHGHL-LCADDSSSSQLRHNPTAGE---YALEQGYSVVLPEKLDTGKWNVYRSS 62
QRRL+ I H+ + SS L N TA + E YSVVLPEKLDTGKWNVYRS
Sbjct: 8 QRRLETIRSHIDTSPTNDQSSSLFLNATASSASPFFKEDSYSVVLPEKLDTGKWNVYRSK 67
Query: 63 RSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTA 122
RSP KLVSRFPDHPEIGT HDNFV AV+T+ + KYLGTRVR DGT+GEY WMTYGEA +
Sbjct: 68 RSPTKLVSRFPDHPEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASE 127
Query: 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN 182
R +GSGL++HG+++G C+GLYF+NRPEWL+VDHAC+AYSF+SVPLYDTLGPDAVK++VN
Sbjct: 128 RQAIGSGLLFHGVNQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVN 187
Query: 183 HASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242
HA++QA+FCVPQTLN LLS L+E+P++RLIVV+GG D+ +PSLP TGV I++Y LLSQ
Sbjct: 188 HANLQAIFCVPQTLNILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQ 247
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
GRS+L PFSPPKP+D+ATICYTSGTTGTPKG VL+HGNLIA+VAG+++ +F+PSDVYIS
Sbjct: 248 GRSSLHPFSPPKPEDIATICYTSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPSDVYIS 307
Query: 303 YLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
YLPLAHIYERANQ+M VY GVAVGFYQGD KLMDD A LRPT+FCSVPRLYNRIY GIT
Sbjct: 308 YLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGIT 367
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
SAV++SG +++RLF AYN+KKQA+++G+ PS WD+LVFNKIK+KLGGRVRFMGSGASP
Sbjct: 368 SAVKSSGVVKKRLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSGASP 427
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
LSPDV+DFL+ICFG V EGYGMTETSC+IS +D+GDNLSGHVGSPN ACE+KLVDVPEM
Sbjct: 428 LSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEM 487
Query: 483 NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542
NYTS+DQP PRGEICVRGP+IFKGYYKDE QT+E++D DGW HTGDIG+W+PGGRLKIID
Sbjct: 488 NYTSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLPGGRLKIID 547
Query: 543 R 543
R
Sbjct: 548 R 548
|
|
| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 203/493 (41%), Positives = 297/493 (60%)
Query: 54 GKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTR-VRVDGTVGEYK 112
G+ R+++ P KL + PD T +D V ++ D +LG R + DG G+YK
Sbjct: 32 GETRPRRNTKFP-KLTNS-PDGKTF-TLYD--VYRINKDSDSNFLGIRELLADGKRGDYK 86
Query: 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
W++Y +A +GS L+ G++KG IG++ +NRPEW++ D A +S + V LY TL
Sbjct: 87 WISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVALYATL 146
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ-IPSLPITTGV 231
G +A++Y+VNH+ + + C + + +LS T++ IV + + V
Sbjct: 147 GANAIEYVVNHSEISVLLCEGKNVEKILSMPGT--TIKTIVSYDPLPQATLDKFKDNENV 204
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
++ S+ G N P P+D+ T+ YTSG+TG PKG +L+H N+++ VAGA
Sbjct: 205 KLYLLSDFEKLGEQNPAQHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFS 264
Query: 292 TK-FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
P DV++SYLPLAH +ERA + Y G +GF+ G +L +D+ LRPT C
Sbjct: 265 PAGVIPEDVHMSYLPLAHSFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGA 324
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
PR++ R++ + V L++ LFN N+K+ A+ G +P+WD+LVF+K KD+LG
Sbjct: 325 PRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSKQSALRLGST-TPIWDKLVFSKTKDRLG 383
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470
GRV+F+ SG++PL P + +FL+ CF V GYG++E S DN GHVG P +
Sbjct: 384 GRVKFILSGSAPLDPKLAEFLRACFCCPVVSGYGLSENVGGASVAYPEDNNVGHVGPPLS 443
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
ACE+KL+DVPEMNY S D+PCPRGE+C+RG +FKGY+KD +TKE + EDGWFHTGDIG
Sbjct: 444 ACEMKLIDVPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIG 503
Query: 531 MWIPGGRLKIIDR 543
W G L IIDR
Sbjct: 504 RWNENGTLSIIDR 516
|
|
| UNIPROTKB|F1NNV2 ACSL5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
Identities = 203/447 (45%), Positives = 273/447 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W+TY + +GSGL+ G S IG++ NRPEW+I ++AC YS ++VPL
Sbjct: 103 YQWLTYKQVLDRAQHLGSGLLQKGCKPSSDQFIGIFAQNRPEWIISEYACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLL-SC-LSEVPTVRLIVVIGGIDDQIPSL 225
YDTLGPDA+ YIVN A + V C P+ LL +C + P ++ I+++ D ++
Sbjct: 163 YDTLGPDAILYIVNKADIGIVICDKPEKAQILLENCEQGKTPCLKTIILMDLFDKELKDR 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV+IL GR+N++ PP P+D+ +C+TSGTTG PKGA+L+H N++A+
Sbjct: 223 GAKVGVEILALQEAEELGRNNIRKPVPPGPEDLCIVCFTSGTTGNPKGAMLTHENVVANA 282
Query: 286 AGATLGT-----KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMA 340
A A L T + SDV ISYLPLAH++ER Q + G VGF+QGD L DDM
Sbjct: 283 A-AFLRTIEDTVECTTSDVSISYLPLAHMFERVVQTVMYSCGAKVGFFQGDIKLLTDDMK 341
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWD 398
L+PT+F VPRL NRIY I S T +++ L N A K + G +N S + D
Sbjct: 342 TLKPTIFPVVPRLLNRIYDKIQSGANTP--MKKFLLNFAATMKMIEVKQGIIRNDS-LLD 398
Query: 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLD 456
+LVF K+++ +GGRVR M +GA+P+SP VL FL+ G +V E YG TE S C S
Sbjct: 399 KLVFKKVQETMGGRVRIMVTGAAPISPSVLKFLRSALGCQVFEAYGQTECSAGCTFSM-- 456
Query: 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
GD +GHVG P IKL DV EMNY S + GE+C++GP +FKGY KD +T E
Sbjct: 457 PGDWTTGHVGPPLVCNIIKLDDVEEMNYFSSNN---EGEVCIKGPNVFKGYLKDPEKTAE 513
Query: 517 VIDEDGWFHTGDIGMWIPGGRLKIIDR 543
ID+DGW HTGD+G W+P G LKIIDR
Sbjct: 514 AIDKDGWLHTGDVGKWMPNGTLKIIDR 540
|
|
| ZFIN|ZDB-GENE-040912-169 acsl5 "acyl-CoA synthetase long-chain family member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 197/444 (44%), Positives = 277/444 (62%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W+ Y + +GSGLI+ G S+ + IG++ NRPEW+I + AC YS ++VPL
Sbjct: 103 YQWLKYKQVSDRAEFLGSGLIHRGQKPSQDTFIGIFAQNRPEWIIAELACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE---VPTVRLIVVIGGIDDQIPSL 225
YDTLGP+A+ +I+N A++ V C + L SE P ++ I+++ D +
Sbjct: 163 YDTLGPEALVFIINRANISTVICDKKDKAETLLDNSEKKLTPLLKTIILMDSYDSALTER 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV +L+ ++ + G++N PPKP+D++ IC+TSGTTG PKGA+L+H N++A
Sbjct: 223 GSKIGVDVLSLKDVEALGKNNHHRPVPPKPEDLSIICFTSGTTGDPKGAMLTHENVVADA 282
Query: 286 AGA--TLGTKFYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
AG T + F P SDV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 283 AGVVRTFESVFVPVPSDVSISFLPLAHMFERVVQTVLYGVGGRVGFFQGDIRLLPDDMKA 342
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
L+PTVF VPRL NR+Y + S +T ++ L N A K + G +N S MWD+
Sbjct: 343 LQPTVFPVVPRLLNRVYDKVQSGAKTP--FKKWLLNFAIEKKCAEVKQGIIRNDS-MWDK 399
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L+F+K+++ LGGRVR M +GA+P+SP VL FL+ C G ++ E YG TE + S GD
Sbjct: 400 LIFHKVQESLGGRVRVMVTGAAPISPSVLTFLRACLGCQIFEAYGQTECTAACSFTIPGD 459
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519
+GHVG+P IKLVDV EM+Y + + GEICV+G +F+GY D +T E +D
Sbjct: 460 WKTGHVGAPIPCNTIKLVDVEEMDYFASNG---EGEICVKGTNVFRGYLGDPEKTAEALD 516
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDR 543
+DGW HTGDIG W+P G LKIIDR
Sbjct: 517 KDGWLHTGDIGKWLPSGVLKIIDR 540
|
|
| UNIPROTKB|Q1LZF6 ACSL5 "Acyl-CoA synthetase long-chain family member 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.9e-95, Sum P(2) = 9.9e-95
Identities = 188/443 (42%), Positives = 279/443 (62%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y + +GS L++ G S+ S +G++ NRPEW+I + AC YS ++VPL
Sbjct: 103 YRWLSYKQVSDRAEYLGSCLLHKGYKPSQESFVGIFAQNRPEWVISEFACYTYSMVAVPL 162
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSL 225
YDTLG +AV YI+N A + V C PQ L+S + + P ++L++++ +D +
Sbjct: 163 YDTLGAEAVIYIINKADIAMVICDTPQKALVLISNVEKGLTPGLKLVILMDPFEDDLKKR 222
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV+IL+ + + G+ N + PP P+D++ IC+TSGTTG PKGA+L+H N++++
Sbjct: 223 GEKCGVEILSLFDAENLGKENFRKPVPPAPEDLSIICFTSGTTGDPKGAMLTHANIVSNA 282
Query: 286 AG--ATLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G + F P+ DV ISYLPLAH++ER QV+ G VGF+QGD L DDM
Sbjct: 283 SGFLKCMEGVFEPNPEDVCISYLPLAHMFERIVQVIVFSYGAKVGFFQGDIRLLPDDMRT 342
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK-NPSPMWDRL 400
L+PT+F +VPRL N++Y + + +T L++ L N A +K + + G +WD+L
Sbjct: 343 LKPTLFPTVPRLLNKVYDKVQNEAKTP--LKKFLLNLAVASKFREVKRGIIRRDSLWDKL 400
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN 460
+F KI++ LGG+VR + +GA+P+SP VL FL+ G V E YG TE + + GD
Sbjct: 401 IFGKIQESLGGKVRLLITGAAPISPPVLTFLRAALGCLVFEAYGQTECTAGCTVTLPGDW 460
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
SGHVG P A +KL DVP+MNY + + GEIC+RG +FKGY K+ +T+E +D+
Sbjct: 461 KSGHVGVPMACNHVKLEDVPDMNYFAVNN---EGEICIRGHNVFKGYLKEPEKTQETLDK 517
Query: 521 DGWFHTGDIGMWIPGGRLKIIDR 543
DGW HTGDIG W+P G LK+IDR
Sbjct: 518 DGWLHTGDIGRWLPNGTLKVIDR 540
|
|
| ZFIN|ZDB-GENE-040801-88 zgc:101071 "zgc:101071" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
Identities = 190/442 (42%), Positives = 276/442 (62%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GS ++ G SK IG++ NRPEW I + AC YS ISVPL
Sbjct: 118 YEWLSYSEVIERAEHLGSAFLHKGHSKSGDPYIGIFSQNRPEWTIAELACYTYSLISVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS-EVPTVRLIVVIGGIDDQIPSLP 226
YDTLG +A+ YI++ + V C VP+ LL C+S +V+ ++++ +D + S
Sbjct: 178 YDTLGTEAISYILDKTCISTVVCDVPEKAGLLLECVSGRQHSVKTLILMADVDADLQSRA 237
Query: 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
G+QI++ ++ + G+++ + PP+PDD+A IC+TSGTTG PKGA+L+H N++++++
Sbjct: 238 QQCGIQIMSLTDAENMGKTHRRQPEPPQPDDLAVICFTSGTTGNPKGAMLTHRNIVSNIS 297
Query: 287 G---ATLGTKFYPS-DVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAAL 342
T T S D +ISYLPLAH++ER Q + + G +G++QGD LMDD+ AL
Sbjct: 298 AFIHVTNSTCPLSSRDSHISYLPLAHMFERVVQGVVLLHGARIGYFQGDIRVLMDDLIAL 357
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG-KNPSPMWDRLV 401
+PT+F VPRL NR++ I T L+ RL A+ K+ M SG +WD+++
Sbjct: 358 KPTIFPVVPRLLNRMFDKIYGQANTP--LKRRLLEFAFRRKEAEMKSGIMRRDSIWDKII 415
Query: 402 FNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNL 461
F K++ +GG VR M +GA+P+S VL FL+ G + EGYG TE + + GD
Sbjct: 416 FKKVQASVGGCVRMMVTGAAPISEPVLTFLRAALGCQFYEGYGQTECTAGSTTTLPGDWT 475
Query: 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521
+GHVG+P +IKLVDV EMNY + + GE+CVRGP FKGY KD +TKE +DE+
Sbjct: 476 AGHVGAPLPCNDIKLVDVAEMNYYAANG---EGEVCVRGPNAFKGYLKDPEKTKEALDEE 532
Query: 522 GWFHTGDIGMWIPGGRLKIIDR 543
GW HTGDIG W+P G LKI+DR
Sbjct: 533 GWVHTGDIGRWLPNGSLKIVDR 554
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| UNIPROTKB|D4A6Q0 Acsl6 "Long-chain-fatty-acid--CoA ligase 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 203/445 (45%), Positives = 272/445 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
D DGW HTGDIG W+P G LKIIDR
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDR 555
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| UNIPROTKB|E9PSJ2 Acsl6 "Long-chain-fatty-acid--CoA ligase 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 203/445 (45%), Positives = 272/445 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 118 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 177
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 178 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 237
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 238 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 297
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 298 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 357
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 358 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 414
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 415 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 474
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 475 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 530
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
D DGW HTGDIG W+P G LKIIDR
Sbjct: 531 DSDGWLHTGDIGKWLPEGTLKIIDR 555
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| UNIPROTKB|F1LQF8 Acsl6 "Long-chain-fatty-acid--CoA ligase 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
Identities = 203/445 (45%), Positives = 272/445 (61%)
Query: 111 YKWMTYGEAGTARTEVGSGLIYHGISKGS--CIGLYFVNRPEWLIVDHACSAYSFISVPL 168
Y+W++Y E +GSGL+ H G+ IG++ NRPEW+I + AC YS + VPL
Sbjct: 143 YQWLSYQEVAKRAEFLGSGLLQHDCKVGTEQFIGVFAQNRPEWIIAELACYTYSMVVVPL 202
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSL 225
YDTLGP +++YI+N A + V P LL + E P ++L++++ DD +
Sbjct: 203 YDTLGPGSIRYIINTADICTVIVDKPHKAILLLEHVERKETPGLKLVILMEPFDDALRER 262
Query: 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
GV I + + G+ N + PP+PDD++ +C+TSGTTG PKGA+L+HGN++A
Sbjct: 263 GKKCGVDIKSMQAIEDSGQENHRVPVPPRPDDLSIVCFTSGTTGNPKGAMLTHGNVVADF 322
Query: 286 AGATLGTK--FYP--SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAA 341
+G T+ +P DV IS+LPLAH++ER Q + G VGF+QGD L DDM A
Sbjct: 323 SGFLKVTEKVIFPRQDDVLISFLPLAHMFERVIQSVVYCHGGRVGFFQGDIRLLSDDMKA 382
Query: 342 LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG--KNPSPMWDR 399
LRPT+F VPRL NR+Y I TS L+ L A K+ + SG +N S +WD
Sbjct: 383 LRPTIFPVVPRLLNRMYDKIFHQADTS--LKRWLLEFAAKRKQAEVRSGIIRNNS-IWDE 439
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
L FNKI+ LGG VR + +GA+P SP VL FL+ G +V EGYG TE + + GD
Sbjct: 440 LFFNKIQASLGGHVRMIVTGAAPASPTVLGFLRAALGCQVYEGYGQTECTAGCTFTTPGD 499
Query: 460 NLSGHVGSPNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SGHVG+P IKLVD E+NY TS+ + GEICV+GP +FKGY KDE +TKE +
Sbjct: 500 WTSGHVGAPLPCNHIKLVDAEELNYWTSKGE----GEICVKGPNVFKGYLKDEDRTKEAL 555
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
D DGW HTGDIG W+P G LKIIDR
Sbjct: 556 DSDGWLHTGDIGKWLPEGTLKIIDR 580
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LKS5 | LACS7_ARATH | 6, ., 2, ., 1, ., 3 | 0.7321 | 0.9963 | 0.7728 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.976 |
| 3rd Layer | 6.2.1.3 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019949001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (700 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00038876001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa) | • | • | 0.908 | ||||||
 | GSVIVG00018681001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa) | • | • | 0.907 | ||||||
 | GSVIVG00033040001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa) | • | 0.899 | |||||||
 | GSVIVG00009919001 | SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa) | • | 0.899 | |||||||
 | GSVIVG00009515001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa) | • | 0.899 | |||||||
 | GSVIVG00025319001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa) | • | 0.800 | |||||||
 | GSVIVG00019100001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa) | • | 0.800 | |||||||
 | GSVIVG00009528001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 543 | |||
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-134 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-132 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-128 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-116 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 1e-113 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-104 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-90 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-87 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-87 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 6e-75 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 5e-64 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 2e-63 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 7e-58 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-52 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-48 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 5e-48 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-45 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-44 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 9e-40 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-38 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 1e-36 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 4e-36 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 5e-35 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 6e-35 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-34 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 3e-34 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 4e-34 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 8e-34 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-32 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-31 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 3e-31 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 4e-31 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 6e-30 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 7e-30 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 1e-29 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-29 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 8e-29 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 4e-28 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 2e-27 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 3e-27 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 3e-27 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-26 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 2e-26 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 8e-26 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 2e-25 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-25 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 3e-25 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 5e-24 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 1e-23 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-23 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 9e-23 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 1e-22 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-22 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 8e-22 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 1e-21 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 3e-21 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 5e-21 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 4e-20 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 1e-19 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 2e-19 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 8e-19 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 8e-19 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 1e-18 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 2e-18 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 4e-18 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 4e-18 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 1e-17 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 3e-17 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 4e-17 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 5e-17 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 6e-17 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 6e-17 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 7e-17 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 8e-17 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 2e-16 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-16 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 3e-16 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 8e-16 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 9e-16 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 2e-15 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-15 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 3e-15 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 9e-15 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-14 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 1e-14 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 1e-14 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 3e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 9e-14 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-13 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-13 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 2e-13 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 2e-13 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 3e-13 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 5e-13 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 6e-13 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 8e-13 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-12 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 1e-12 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-12 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 2e-12 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 4e-12 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-12 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 5e-12 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-11 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-11 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 3e-11 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-11 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 6e-11 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-10 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-10 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-10 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 4e-10 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 5e-10 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 7e-10 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-09 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 2e-09 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 3e-09 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 3e-09 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-09 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 3e-09 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 4e-09 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 7e-09 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 9e-09 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-08 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-08 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 1e-08 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 1e-08 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 2e-08 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-08 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 6e-08 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-08 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 7e-08 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 8e-08 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-07 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 1e-07 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 1e-07 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 1e-07 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-07 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 2e-07 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 3e-07 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 4e-07 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 4e-07 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-06 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 2e-06 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 2e-06 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 2e-06 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 4e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 5e-06 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 5e-06 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 5e-06 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 5e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 7e-06 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 8e-06 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 1e-05 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 1e-05 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 1e-05 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 1e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-05 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 2e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 3e-05 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 4e-05 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 5e-05 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 6e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 6e-05 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 7e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 8e-05 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 9e-05 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 1e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-04 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-04 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 4e-04 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 5e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-04 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 6e-04 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 8e-04 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 0.001 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.001 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 0.001 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 0.001 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 0.002 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.003 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 1073 bits (2776), Expect = 0.0
Identities = 424/508 (83%), Positives = 476/508 (93%)
Query: 36 EYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDY 95
E+ EQGYSVVLPEKL TGKWNVYRS+RSPLKLVSRFPDHPEIGT HDNFV AV+TFRDY
Sbjct: 1 EFVHEQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDY 60
Query: 96 KYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155
KYLGTR+RVDGTVGEYKWMTYGEAGTART +GSGL+ HGI KG+C+GLYF+NRPEWLIVD
Sbjct: 61 KYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVD 120
Query: 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVI 215
HACSAYS++SVPLYDTLGPDAVK+IVNHA V A+FCVPQTLN+LLSCLSE+P+VRLIVV+
Sbjct: 121 HACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVV 180
Query: 216 GGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAV 275
GG D+ +PSLP TGV+I+TYS LL+QGRS+ QPF PPKP+DVATICYTSGTTGTPKG V
Sbjct: 181 GGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVV 240
Query: 276 LSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL 335
L+HGNLIA+VAG++L TKFYPSDV+ISYLPLAHIYER NQ++ ++ GVAVGFYQGDN+KL
Sbjct: 241 LTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKL 300
Query: 336 MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395
MDD+AALRPT+FCSVPRLYNRIY GIT+AV+ SGGL+ERLFNAAYNAKKQA+ +GKNPSP
Sbjct: 301 MDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP 360
Query: 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455
MWDRLVFNKIK KLGGRVRFM SGASPLSPDV++FL+ICFGGRV EGYGMTETSC+IS +
Sbjct: 361 MWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGM 420
Query: 456 DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK 515
DEGDNLSGHVGSPN ACE+KLVDVPEMNYTSEDQP PRGEICVRGP+IFKGYYKDE+QT+
Sbjct: 421 DEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTR 480
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
EVIDEDGW HTGDIG+W+PGGRLKIIDR
Sbjct: 481 EVIDEDGWLHTGDIGLWLPGGRLKIIDR 508
|
Length = 651 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 594 bits (1533), Expect = 0.0
Identities = 211/438 (48%), Positives = 271/438 (61%), Gaps = 41/438 (9%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G Y+W++Y E +GSGL G+ G IG++ NRPEW+I + AC + S + VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
YDTLG +A++YI+N + VFC
Sbjct: 61 YDTLGEEAIEYILNETEISIVFC------------------------------------- 83
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
V++ ++ L G+ N P +PPKP+D+ATI YTSGTTG PKG +L+HGN++A VAG
Sbjct: 84 DAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGI 143
Query: 289 --TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
+ P+DVYISYLPLAHI+ER + + +Y G +G+Y GD L D+ L+PTV
Sbjct: 144 NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKELKPTV 203
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP-SPMWDRLVFNKI 405
F VPR+ +RIY GI + V GGL+ LFN AYN K A+ G SP+WD+LVF KI
Sbjct: 204 FVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGHGYASPLWDKLVFKKI 263
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV 465
K LGGRVR M SG +PLSPD +FL++ G V +GYG+TET + D GD +GHV
Sbjct: 264 KAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHV 323
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
G P CEIKLVDVPEM Y ++D P PRGEIC+RGP +FKGYYK+ +T E DEDGWFH
Sbjct: 324 GPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFH 382
Query: 526 TGDIGMWIPGGRLKIIDR 543
TGDIG W+P G LKIIDR
Sbjct: 383 TGDIGEWLPDGTLKIIDR 400
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 404 bits (1039), Expect = e-134
Identities = 211/499 (42%), Positives = 284/499 (56%), Gaps = 21/499 (4%)
Query: 58 VYRSSRSPLKLVSRFPD-HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
VYR+ S FP +I T D F ++V+ + D K LG R VDG VG Y W TY
Sbjct: 24 VYRNLLSK----KGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTY 79
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
E ++GS L G GS +G+Y N P+W++ AC+A+S I VPLYDTLGP A
Sbjct: 80 KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139
Query: 177 VKYIVNHASVQAVFCVPQTLNSLLS--CLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
V YIV+HA + VF + + LL C S ++ IV + ++ GV+
Sbjct: 140 VDYIVDHAEIDFVFVQDKKIKELLEPDCKS-AKRLKAIVSFTSVTEEESDKASQIGVKTY 198
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---- 290
++ + L G+ N +PPKP D+ TI YTSGT+G PKG VL+H + V G L
Sbjct: 199 SWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQ 258
Query: 291 -GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCS 349
K DVY+S+LPLAHI +R + G +VG+Y GD L DD+ L+PT+
Sbjct: 259 FEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAG 318
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG---KNPSPMWDRLVFNKIK 406
VPR++ RI+ GI A++ R +FNA Y K M G K SPM D L F K+K
Sbjct: 319 VPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVK 378
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GH 464
KLGGR+R + SG +PLS ++ +FL++ V +GYG+TET + L D + G
Sbjct: 379 AKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET-LGPTTLGFPDEMCMLGT 437
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
VG+P E++L +VPEM Y +P PRGEICVRG +F GYYK+ T+EV+ +DGWF
Sbjct: 438 VGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPELTEEVM-KDGWF 495
Query: 525 HTGDIGMWIPGGRLKIIDR 543
HTGDIG +P G LKIIDR
Sbjct: 496 HTGDIGEILPNGVLKIIDR 514
|
Length = 660 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 398 bits (1025), Expect = e-132
Identities = 168/472 (35%), Positives = 237/472 (50%), Gaps = 36/472 (7%)
Query: 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLY 144
V D L + G ++ +TY E + SGL+ GI G + ++
Sbjct: 22 LAERVKDRPDGVALMYKEL-----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIF 76
Query: 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC-VPQTLNSLLSCL 203
NRPEW I D A A +SVP+Y T P+ + YI+N + + +F + L+ +L L
Sbjct: 77 AANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVL 136
Query: 204 SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL---LSQGRSNLQPFSPPKPDDVAT 260
+ P V ++VI + + +++ + L +PPKPDD+AT
Sbjct: 137 EDCPKVVDLIVIIDLVREAVE-AKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDLAT 195
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERANQVMTV 319
I YTSGTTGTPKG +L+H NL+A VAG + P D +S+LPLAHI+ERA +
Sbjct: 196 IIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA 255
Query: 320 -YSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
Y GV V F + + +D+ +RPTV VPR++ ++Y GI V + +R +LF
Sbjct: 256 LYGGVTVLFKEDPRTLL--EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFR 313
Query: 378 AAYNAK--KQAMLSGKNPSPMW----DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
A K + W DRLVF KI+D LGGR+R+ SG +PLSP++L F
Sbjct: 314 WALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFF 373
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ G + EGYG+TETS ++S + G VG P E+K+ D
Sbjct: 374 RSL-GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD------------- 419
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GEI VRGP + KGYYK+ T E EDGWF TGD+G G L I R
Sbjct: 420 -DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGR 470
|
Length = 613 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 389 bits (1001), Expect = e-128
Identities = 196/479 (40%), Positives = 277/479 (57%), Gaps = 17/479 (3%)
Query: 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGIS 136
+I + F AV + + + LG R D VG Y W+TY E A +GS + G++
Sbjct: 41 DIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVN 100
Query: 137 KGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL 196
G G+Y N PEW+I AC++ VPLYDTLG +AV++I+NHA V F +
Sbjct: 101 PGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI 160
Query: 197 NSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK- 254
+S+LSCL + + ++ IV G + + GV ++ G + + PPK
Sbjct: 161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCE--LPPKQ 218
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-----PSDVYISYLPLAHI 309
D+ TI YTSGTTG PKG +L++ +IA V K D Y SYLPLAH+
Sbjct: 219 KTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHV 278
Query: 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
Y++ + + G ++GF+QGD LM+D+ AL+PT+FC VPR+Y+RIY GI + + G
Sbjct: 279 YDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGG 338
Query: 370 GLRERLFNAAYNAKKQAM---LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
LR++LF+ AYN K + L + SP DRLVF+KIK+ LGGRVR + SGA+PL
Sbjct: 339 MLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRH 398
Query: 427 VLDFLKICFGGRVTEGYGMTET--SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484
V +FL++ +++GYG+TE+ C S + ++ G VG P E +L VPEM Y
Sbjct: 399 VEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVF-SMVGTVGVPMTTIEARLESVPEMGY 457
Query: 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ PRGEIC+RG +F GY+K + T+EV+ DGWFHTGDIG W P G +KIIDR
Sbjct: 458 DALSD-VPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDR 514
|
Length = 660 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 358 bits (920), Expect = e-116
Identities = 195/499 (39%), Positives = 287/499 (57%), Gaps = 21/499 (4%)
Query: 58 VYRSSRSPLKLVSRFPDHPE-IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
VYRS + FP+ E + + D F +V+ + + LG R VDG G+Y W TY
Sbjct: 27 VYRSIFAK----DGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTY 82
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
E ++G+ L G+ + G+Y N PEW+I AC+A+ VPLYDTLG A
Sbjct: 83 QEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGA 142
Query: 177 VKYIVNHASVQAVFCVPQTLNSLL-SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235
V++I++H+ V VF + ++ L +C + ++ +V GG+ + T G+ I
Sbjct: 143 VEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYA 202
Query: 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-----TL 290
+ L G K D+ TI YTSGTTG PKG ++S+ +++ +AG +
Sbjct: 203 WDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSA 262
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
DVY+SYLPLAHI++R + + G A+GF++GD L++D+ L+PT+FC+V
Sbjct: 263 NAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAV 322
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN---PSPMWDRLVFNKIKD 407
PR+ +R+Y+G+ + G L++ +F++A++ K M G++ SP+ D+LVFNK+K
Sbjct: 323 PRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQ 382
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC---LISQLDEGDNLSGH 464
LGG VR + SGA+PL+ V FL++ V +GYG+TE SC +S DE D L G
Sbjct: 383 GLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE-SCAGTFVSLPDELDML-GT 440
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
VG P +I+L VPEM Y + PRGEIC+RG +F GYYK E TKEV+ DGW
Sbjct: 441 VGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWL 498
Query: 525 HTGDIGMWIPGGRLKIIDR 543
HTGD+G W P G +KIIDR
Sbjct: 499 HTGDVGEWQPNGSMKIIDR 517
|
Length = 666 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 352 bits (905), Expect = e-113
Identities = 182/497 (36%), Positives = 272/497 (54%), Gaps = 42/497 (8%)
Query: 85 FVRAVDTFRDYKYLGTRVRV--------DG------TVGEYKWMTYGEAGTARTEVGSGL 130
F ++ + D + LGTR + DG +GEY+W+TYG+ SGL
Sbjct: 64 FEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGL 123
Query: 131 IYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVF 190
+ G +K + ++ R EWLI C + V +Y +LG +A+ + +N V V
Sbjct: 124 VALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVI 183
Query: 191 CVPQTLNSLLSCLSEVPTVRLIVVI-GGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
C + L L+ S++ TV+ ++ + D SL ++ + ++S + G+ N
Sbjct: 184 CDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVD 243
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-TLGTKFYPSDVYISYLPLAH 308
P P+D+A I YTSG+TG PKG +++HGN++A+VAG T+ K +DVY++YLPLAH
Sbjct: 244 PDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAH 303
Query: 309 IYERANQVMTVYSGVAVGFYQGDNMKLMD-----------DMAALRPTVFCSVPRLYNRI 357
I E A + + G A+G+ G + L D D +AL+PT+ +VP + +R+
Sbjct: 304 ILELAAESVMAAVGAAIGY--GSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRV 361
Query: 358 YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK------NPSPMWDRLVFNKIKDKLGG 411
G+ V GGL ++LF+ AY ++ A + G +WD LVF KI+ LGG
Sbjct: 362 RDGVRKKVDAKGGLAKKLFDIAY-KRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGG 420
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS-GHVGSPNA 470
R+RFM SG +PLS D F+ IC G + +GYG+TET C + E D+ S G VG P
Sbjct: 421 RIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTET-CAGATFSEWDDTSVGRVGPPLP 479
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEV--IDEDG--WFHT 526
C +KLV E Y D+P PRGEI + GP + GY+K++ +T EV +DE G WF+T
Sbjct: 480 CCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYT 539
Query: 527 GDIGMWIPGGRLKIIDR 543
GDIG + P G L+IIDR
Sbjct: 540 GDIGQFHPDGCLEIIDR 556
|
Length = 696 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 329 bits (845), Expect = e-104
Identities = 159/453 (35%), Positives = 238/453 (52%), Gaps = 32/453 (7%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
E +++TY E G GL G++KGS + +Y R EWL + + S ++ +Y
Sbjct: 118 ETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVY 177
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPI 227
LG DA+ Y + +A+ C + + +LL + +P +I + D +P+
Sbjct: 178 ANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYL-----DSLPASVD 232
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKP---DDVATICYTSGTTGTPKGAVLSHGNLIAS 284
T G +++ +++++++G S P DD+A I YTSGTTG PKG + +HG+L A
Sbjct: 233 TEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292
Query: 285 VAGATLGTKFY-------PSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD 337
+ L + + Y SYLPLAHI E + + G +GF G L D
Sbjct: 293 IL--ALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTD 348
Query: 338 -------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390
D+ RP VPR+++ I + + + G L+ R+F+ AY ++ +A+ G
Sbjct: 349 TFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEG 408
Query: 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC 450
K+ +P W+ VF+ + LGGRVR M SG PLS +F+ + FG V +G+G+TET C
Sbjct: 409 KD-TPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVC 466
Query: 451 LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510
GD VG E+KL+D E +T D P PRGEI +RGP +FKGYYK
Sbjct: 467 CGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHT--DTPEPRGEILLRGPFLFKGYYKQ 524
Query: 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
E T+EV+DEDGWFHTGD+G G L+II R
Sbjct: 525 EELTREVLDEDGWFHTGDVGSIAANGTLRIIGR 557
|
Length = 700 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 285 bits (731), Expect = 1e-90
Identities = 116/291 (39%), Positives = 157/291 (53%), Gaps = 45/291 (15%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE-R 312
KPDD+AT+ YTSGTTG PKG +L+H NL+A A P D +S+LPLAH++E R
Sbjct: 86 KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQR 145
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
+ + + SG V F + L++D+ +RPTVF +VPR++ +IYAGI + V +G L+
Sbjct: 146 LGEYLPLSSGARVNFAESPE-TLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLK 204
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK 432
+LF A GGR+RF SG +PL P+VL+F +
Sbjct: 205 RKLFRWA----------------------------LGGGRLRFAVSGGAPLPPEVLEFFR 236
Query: 433 ICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP 492
G + EGYG+TETS + + GD G VG P E+++ +
Sbjct: 237 A-LGIPILEGYGLTETSGVATVNRPGDIRIGTVGKPLPGVEVRIAED------------- 282
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GEI VRGP + KGYYK+ T E +DEDGW HTGDIG G L I DR
Sbjct: 283 -GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDR 332
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 279 bits (715), Expect = 1e-87
Identities = 146/447 (32%), Positives = 199/447 (44%), Gaps = 63/447 (14%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
G EY T+ + + + L G+ G I + N EW+I D A +
Sbjct: 1 GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS 224
SVPLY TL + ++Y++ H+ +A+F V + + + I+
Sbjct: 58 SVPLYPTLTAETIRYVLEHSDAKALF-VGKLDDWDAMKAGVPEGLPTII----------L 106
Query: 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS 284
P +T + +LL+ LQ P+P+D+ATI YTSGTTG PKG +LS G +
Sbjct: 107 FPYSTLKDHYKWDDLLAATEP-LQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFA 165
Query: 285 VAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQG-DNMKLMDDMAAL 342
G P+D +SYLPLAHI ER + ++YSG V F + D D+
Sbjct: 166 AQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLD--TFAADLQRA 223
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
RPTVF SVPRL+ + GI + + L P+ LV
Sbjct: 224 RPTVFFSVPRLWTKFQQGILAKL--PPEKLNLLLKI----------------PILSSLVK 265
Query: 403 NKIKDKLG-GRVRFMGSGASPLSPDVLDF-----LKICFGGRVTEGYGMTETSCLISQLD 456
KI LG + R GSGA+P+ P ++ + L IC EGYGMTE +
Sbjct: 266 KKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPIC------EGYGMTENFAYSTLNY 319
Query: 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
GD G VG P E+K+ SED GEI +R P + GYYKD +T E
Sbjct: 320 PGDRRIGTVGKPIPGVELKI---------SED-----GEILIRSPGLMSGYYKDPEKTAE 365
Query: 517 VIDEDGWFHTGDIGMWIPGGRLKIIDR 543
EDGW HTGD G G LKI R
Sbjct: 366 AFTEDGWLHTGDKGEIDEDGFLKITGR 392
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 1e-87
Identities = 115/440 (26%), Positives = 176/440 (40%), Gaps = 71/440 (16%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY E + + L G+ G + + N PEW++ A VPL +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
+ + YI+ + + + + L LL L ++ + ++++ G +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV-----------GDDGEGLD 109
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF 294
+ L G S P P PDD+A I YTSGTTG PKG +L+H NL+A AG
Sbjct: 110 LLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169
Query: 295 YPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK---LMDDMAALRPTVFCSVP 351
P D + LPL + +G + + L+D + + TV VP
Sbjct: 170 TPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVP 229
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
L + +K+ LS
Sbjct: 230 TLLRLLLKAP--------------------EEKKYDLS---------------------- 247
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETS--CLISQLDEGDNLSGHVGSP 468
+R + SG PL P++L L+ FGG + GYG TET+ + + + G +G P
Sbjct: 248 SLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRP 307
Query: 469 NAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF- 524
E+K++D E +P P GE+C+RGP + +GY D T E EDGW
Sbjct: 308 LPGVEVKVLD-------EEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGM 360
Query: 525 -HTGDIGMWIPGGRLKIIDR 543
TGD+G W G L+I+ R
Sbjct: 361 YRTGDLGRWDEDGYLEILGR 380
|
Length = 412 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 6e-75
Identities = 128/441 (29%), Positives = 191/441 (43%), Gaps = 68/441 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + + L G+ G + + N PE+LI A ++VPL L
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P + YI+N A + + + L + +P V +++++G DD++P
Sbjct: 99 PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLP---------- 148
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--ATLG 291
+T L ++G P PDD+A + YTSGTTG PKG VL+H NL+A+ AG A LG
Sbjct: 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALG 208
Query: 292 TKFYPSDVYISYLPLAHIYERANQVM---TVYSGVAVGFYQG---DNMKLMDDMAALRPT 345
P DV +S+LPL HI+ V + G + D +++ + + T
Sbjct: 209 GGLTPDDVVLSWLPLFHIF--GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVT 266
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405
V VP + L +
Sbjct: 267 VLSGVPTFLREL-------------LDNPEKD---------------------------- 285
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQ--LDEGDNLS 462
D L +R + SG +PL P++L+ + FG + EGYG+TETS +++ D+
Sbjct: 286 DDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKP 345
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG 522
G VG P E+++VD E P GEI VRGP + KGY+ T E DEDG
Sbjct: 346 GSVGRPLPGVEVRIVDPD----GGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDG 401
Query: 523 WFHTGDIGMWIPGGRLKIIDR 543
W TGD+G G L I+ R
Sbjct: 402 WLRTGDLGYVDEDGYLYIVGR 422
|
Length = 534 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 5e-64
Identities = 119/445 (26%), Positives = 181/445 (40%), Gaps = 75/445 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TY E + + L G+ KG + ++ N E+L A + P+ L
Sbjct: 32 TTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLK 91
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P+ + YI+N A + V + + L + L ++PTVR ++V G ++
Sbjct: 92 PEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPA------APLAPEV 145
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
Y LL+ S+ F +D A + YTSGTTG PKG VLSH NL K
Sbjct: 146 GEYEELLA-AASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLK 204
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSG---VAVGFYQGDNMKLMDDMAALRPTVFCSV 350
DVY+ +P+ H++ + + +G V + +N L+D + R T F +V
Sbjct: 205 LSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPEN--LLDLIETERVTFFFAV 262
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P ++ Q +L + F+
Sbjct: 263 PTIW------------------------------QMLLKAPRAYFVD----FS------- 281
Query: 411 GRVRFMGSGASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLIS------QLDEGDNLSG 463
+R + G + L P +L +F + FG + +GYGMTETS ++S QL
Sbjct: 282 -SLRLVIYGGAALPPALLREFKEK-FGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRR 339
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVI 518
G P E ++VD + + P GEI VRGP + +GY+ T E I
Sbjct: 340 SAGRPLPGVEARIVD-DDGD------ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI 392
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
D GW HTGD+G G L I DR
Sbjct: 393 D-GGWLHTGDVGYIDEDGYLYITDR 416
|
Length = 521 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 2e-63
Identities = 135/465 (29%), Positives = 216/465 (46%), Gaps = 62/465 (13%)
Query: 112 KW--MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
W +TY + A + + G+ + +G+ N PEW I I+V +Y
Sbjct: 5 GWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGIY 64
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGG-IDDQIPSLPI 227
T P+A +Y+ + + L +L+ ++P ++ I+ + ++ P+L
Sbjct: 65 TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNL-- 122
Query: 228 TTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL- 281
++ + GRS KP+ T+ YTSGTTG PKG +LSH N+
Sbjct: 123 ------YSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNIT 176
Query: 282 -IASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG----FYQGDNMK-- 334
A A + + + +SYLPL+HI A Q++ ++ ++VG F Q D +K
Sbjct: 177 WTAKAAVKHMDLRTVGQESVVSYLPLSHI---AAQILDIWLPISVGGCVYFAQPDALKGT 233
Query: 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA------YNAKKQAML 388
L+ + +RPT F VPR++ +I + + S GL+ ++ + A N K
Sbjct: 234 LVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMG-- 291
Query: 389 SGKNPSPMW----DRLVFNKIKDKLG-GRVRFMGSGASPLSPDVLDF---LKICFGGRVT 440
G++P PM +LVF K++ LG R + +GA+P+S + L+F L I +
Sbjct: 292 -GESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNI----PIM 346
Query: 441 EGYGMTETSCL--ISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
E YGM+ETS +S LS G CE K+ + P+ + GEIC+
Sbjct: 347 ELYGMSETSGPHTVSNPQNYRLLS--CGKALPGCETKIHN-PDAD--------GIGEICI 395
Query: 499 RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
G +F GY E +T+E IDEDGW H+GD+G G L I R
Sbjct: 396 WGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGR 440
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 7e-58
Identities = 111/446 (24%), Positives = 173/446 (38%), Gaps = 116/446 (26%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + L G+ KG + L N P++ I + VP+
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P +++ +N + + +
Sbjct: 85 PRELEHQLNDSGAKVLIVA----------------------------------------- 103
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--ATLG 291
+++ + L+ G + L PDD+A + YT GTTG PKGA+L+H NL+A+V A +
Sbjct: 104 ISFEDALASG-APLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVK 162
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG---------DNMKLMDDMAAL 342
D +++ LPL HI+ +TV + +G G + ++ ++
Sbjct: 163 DLREGEDRFLTALPLFHIFG-----LTV--NMLLGLRLGATNVLVPNFRPINVLKEIKRY 215
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
R T+F VP LYN L N K+ S
Sbjct: 216 RFTIFPGVPTLYNA------------------LLNHP--EFKKYDFS------------- 242
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLIS-QLDEGDN 460
+R SG +PL +V + F + G + EGYG+TETS + + +G+
Sbjct: 243 ---------SLRLCISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDGER 292
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEV 517
G +G P E+K+VD E P GE+ VRGP + KGY+ +T EV
Sbjct: 293 KPGSIGLPLPGTEVKIVD-------DEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEV 345
Query: 518 IDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ DGW TGDIG G I+DR
Sbjct: 346 LT-DGWLRTGDIGYMDEDGYFYIVDR 370
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-52
Identities = 93/294 (31%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG VLSH NL+A+ DV +S LPL H+ + +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 317 MT-VYSGVAVGFYQGDNM--KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373
+ + +G V Y+G ++ + R TV VP LY+ +
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL---------------- 104
Query: 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
K A G + S + R + SG PLSP++L+ +
Sbjct: 105 ---------AKAAEDRGYDLSSL-----------------RLLISGGEPLSPELLERFEE 138
Query: 434 CFGGRVTEGYGMTETSCLISQL-DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP 492
G + EGYG+TETS + S D G VG P E+++VD E +P P
Sbjct: 139 RPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVDE-------EGKPLP 191
Query: 493 ---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GE+ VRGP + KGY+ + +T EDGW+ TGD+G G L I R
Sbjct: 192 PGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGR 245
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 4e-48
Identities = 110/445 (24%), Positives = 172/445 (38%), Gaps = 77/445 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E + L GI KG + ++ N P W+I + VPL
Sbjct: 31 LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D YI+ +A+F + L S + +P + +V+ + ++
Sbjct: 91 ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEE------DDPHTEKM 144
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLG 291
T+++ L+ G + PDDVA I +TSGTTG PKGA+L+H L+ A+ LG
Sbjct: 145 KTFTDFLAAG-DPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLG 203
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNM---------KLMDDMAAL 342
D Y++ P H++ GV +G + ++ +
Sbjct: 204 LT--EGDRYLAANPFFHVF-----GYKA--GVNAPLMRGATILPLPVFDPDEVFRLIETE 254
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
R TV P +YN + + + LS
Sbjct: 255 RITVLPGPPTMYNSLL--------------------QHPDRSAEDLSS------------ 282
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETS---CLISQLDEG 458
+R +GA+ + +L+ + G V GYG++E S D+
Sbjct: 283 ----------LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDR 332
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
++G +G+ A E K+V+ E GE+ VRGP + KGYY D T I
Sbjct: 333 KTVAGTIGTAIAGVENKIVN----ELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAI 388
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
D DGW HTGD+G G L I+DR
Sbjct: 389 DADGWLHTGDLGRLDEEGYLYIVDR 413
|
Length = 513 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 5e-48
Identities = 91/289 (31%), Positives = 129/289 (44%), Gaps = 44/289 (15%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG VL+HGNL A+ ++ SDV + LPL H++ N +
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNAL 148
Query: 317 M-TVYSGVAVGFYQGDNMKLMDDMAAL-RPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
+++G +V F + + D + L R TVF VP +Y R+ E
Sbjct: 149 HCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEH-----------YEF 197
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
AA A+ +R SG++ L VL+ +
Sbjct: 198 DDAAAAAARN----------------------------LRLFVSGSAALPVPVLERWEER 229
Query: 435 FGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494
G + E YGMTET +S +G+ G VG P E+++VD + + G
Sbjct: 230 TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEV---G 286
Query: 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
EI VRGP +F Y+ T E EDGWF TGD+G+ G +I+ R
Sbjct: 287 EIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGR 335
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 2e-45
Identities = 93/305 (30%), Positives = 127/305 (41%), Gaps = 72/305 (23%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD A I YTSGTTG PKGA+L+H N++ + D + +PL H++
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF---- 56
Query: 315 QVMTVYSGVAVGFYQGDNMKLM---DDMAAL------RPTVFCSVPRLYNRIYAGITSAV 365
+ GV G + LM D AAL R T VP ++
Sbjct: 57 ---GLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMF----------- 102
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSP 425
A+L P +D+ +R SG +P+ P
Sbjct: 103 -------------------IALLE----HPDFDKFDL--------SSLRTGISGGAPVPP 131
Query: 426 DVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGH---VGSPNAACEIKLVDVPE 481
+++ ++ F +T GYGMTETS + +Q D VG P E+K+VD
Sbjct: 132 ELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD--- 188
Query: 482 MNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ P GEICVRG + KGYY D T E ID DGW HTGD+G G L
Sbjct: 189 ----PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYL 244
Query: 539 KIIDR 543
+I+ R
Sbjct: 245 RIVGR 249
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 1e-44
Identities = 93/297 (31%), Positives = 127/297 (42%), Gaps = 62/297 (20%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
DD A I YTSGTTG PKG +L+H NL+A+ A G P DVY+ PL H
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFL 60
Query: 316 VMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
+ + +G V F D ++D + R T VP ++ R+ L
Sbjct: 61 LPALAAGGTVVLMPKF---DPEAVLDLIERHRVTHTFLVPTMFQRL-------------L 104
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
R F A Y+ LS +R + GA+P+ ++ +
Sbjct: 105 RLPDF-ARYD------LS----------------------SLRLIIYGAAPMPAELKRAM 135
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQ 489
FG +GYGMTET + L D L G VG P E+++VD + +
Sbjct: 136 IEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVD-------EDGR 188
Query: 490 PCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
P GEI VRGP + GY+ T E + DGW HTGD+G G L I+DR
Sbjct: 189 ELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDR 244
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 9e-40
Identities = 121/485 (24%), Positives = 178/485 (36%), Gaps = 102/485 (21%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTE-VGSGLIYHGISKGSCIGLYF 145
RA + D T V V G Y + + R + S L GI KG + +
Sbjct: 12 RAAKVYPDR----TAV-VYGDR-RYTYRETYD----RCRRLASALSKLGIGKGDVVAVLA 61
Query: 146 VNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE 205
N P L + VPL L D + +I+NH+ + +F + L+ L+
Sbjct: 62 PNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL 121
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ T +I + P + Y +LL+ G + P P D ++ YTS
Sbjct: 122 LSTKEIIDTEIIVIS-----PAAEDSEEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTS 176
Query: 266 GTTGTPKGAVLSH-GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-----VMTV 319
GTTG PKG V +H G + ++ G + VY+ LP+ H N +T
Sbjct: 177 GTTGNPKGVVYTHRGAYLNAL-GNVIEWGMPDRPVYLWTLPMFH----CNGWCFPWAITA 231
Query: 320 YSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379
G V + D + D + + T C P + N + A
Sbjct: 232 VGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNML--------------------AN 271
Query: 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439
+ L VR M +GA P P + G V
Sbjct: 272 APEADKL---------------------PLPRPVRVMTAGAPP--PPAVIKKMEELGFEV 308
Query: 440 TEGYGMTETSCLIS---QLDEGDNLS-------------GHVGSPNAACEIKLVDVPEMN 483
T YG+TET I+ E D L +VG E+ +VD PE
Sbjct: 309 THVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVG----LEEVDVVD-PETM 363
Query: 484 YTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ PR GEI +RG + KGYYK+ T+E GWFH+GD+ + P G +
Sbjct: 364 -----KDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGYI 417
Query: 539 KIIDR 543
+I DR
Sbjct: 418 EIKDR 422
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-38
Identities = 90/300 (30%), Positives = 126/300 (42%), Gaps = 57/300 (19%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+ KPDD A I +TSG+ G PKG VLSH NL+A++ DV + LPL H +
Sbjct: 140 AGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAF 199
Query: 311 E-RANQVMTVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
++ + +G+ V +Y D K+ + + + T+ C P R YA
Sbjct: 200 GLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFL-RGYAR------- 251
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
NA + S RLV +GA L
Sbjct: 252 -------------NAHPE-DFSSL-------RLVV---------------AGAEKLPEAT 275
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ + FG R+ EGYG TE S +IS N G VG P E+++V
Sbjct: 276 RELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETH----- 330
Query: 488 DQPCPRGE---ICVRGPLIFKGYYKDEIQTKEV-IDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ P GE + VRGP + GY +E +T EV + DGW+ TGDIG G L I+ R
Sbjct: 331 -EELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGR 389
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-36
Identities = 96/299 (32%), Positives = 133/299 (44%), Gaps = 63/299 (21%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY-ERA 313
PDD A I +TSGTTG PKG L+H NL+AS K PSD ++ +PL HI+
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIV 60
Query: 314 NQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
+ + T+ +G +V F K DD+A R T + +VP ++
Sbjct: 61 SLLATLLAGGSVVCPPKF---SASKFWDDIAKYRVTWYSAVPTIH--------------- 102
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
Q +L P+P K R+RF+ S ++PL P VLD
Sbjct: 103 ---------------QILLKTAKPNPG-----------KPPPRLRFIRSASAPLPPAVLD 136
Query: 430 FLKICFGGRVTEGYGMTETSCLIS--QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
L+ FG V E YGMTE + I+ L G VG P A E+ ++D +
Sbjct: 137 RLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP-AGVEVAILD-------DD 188
Query: 488 DQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+P P GEI +RGP + GY + +E DGWF TGD+G G L + R
Sbjct: 189 GRPLPPGQEGEIVIRGPNVTAGYLNNPEANRE-AFRDGWFRTGDLGYLDEDGYLFLTGR 246
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 4e-36
Identities = 98/312 (31%), Positives = 137/312 (43%), Gaps = 82/312 (26%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-----TLGTKFYPSDVYISYLPLA 307
P PDDVA I YTSGTTG PKGA L+H NL A+ A LG + ++ LP+
Sbjct: 216 PTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDG---PERVLAALPMF 272
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKL---------MDDMAALRPTVFCSVPRLYNRIY 358
H Y +T+ + + G + L +D M PT VP LY +I
Sbjct: 273 HAYG-----LTL--CLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA 325
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAM-LSGKNPSPMWDRLVFNKIKDKLGGRVRFMG 417
A+++ + LSG VR
Sbjct: 326 EA---------------------AEERGVDLSG----------------------VRNAF 342
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS-----GHVGSPNAAC 472
SGA L ++ + GG + EGYG+TETS +I G+ +S G+VG P
Sbjct: 343 SGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV----GNPMSDDRRPGYVGVPFPDT 398
Query: 473 EIKLVDVPEMNYTSEDQP-CPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E+++VD PE E P GE+ VRGP +FKGY+ +T + DGWF TGD+ +
Sbjct: 399 EVRIVD-PED--PDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVV 454
Query: 532 WIPGGRLKIIDR 543
G ++I+DR
Sbjct: 455 MEEDGFIRIVDR 466
|
Length = 573 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-35
Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 4/132 (3%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
+R + SGA+PLS ++ + L+ F + +GYGMTET + GD G VG
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E K+VD ++ RGE+CV+GP I KGY + TKE IDEDGW HTGDIG
Sbjct: 325 VEAKIVDEDGGKSLGPNE---RGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGY 381
Query: 532 WIPGGRLKIIDR 543
+ G I+DR
Sbjct: 382 FDEDGNFYIVDR 393
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 6e-35
Identities = 99/397 (24%), Positives = 147/397 (37%), Gaps = 87/397 (21%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L P+ + YI+NHA + +F L L + V + D P T+
Sbjct: 84 LSPEQIAYIINHAEDKVIFVDD----DFLPLLEAIAPRLPTVKAVVVYDDADM-PETSLP 138
Query: 232 QILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGA 288
+ Y LL + P + A +CYTSGTTG PKG V SH +L+ +
Sbjct: 139 NVYAYEELLEEESPEY--EWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASAL 196
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG---FYQGDNMK---LMDDMAAL 342
SD + +P+ H N Y+ VG G + L+D +
Sbjct: 197 PDSLGLSESDTVLPVVPMFH----VNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEEE 252
Query: 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVF 402
+ TV VP ++ GL L A + + S +
Sbjct: 253 KVTVSAGVPTIWL--------------GLLNYL-----EANGKDLSSLRR---------- 283
Query: 403 NKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS--------- 453
+ G S L +++ L+ G V +GMTETS L +
Sbjct: 284 -------------VVVGGSALPRSLIEKLEE-RGVEVIHAWGMTETSPLGTVSRLKPHLV 329
Query: 454 --QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKG 506
+E L G P E+++VD E P GE+ VRGP +
Sbjct: 330 DLPEEEKLELRAKQGRPVPGVELRIVD-------DEGNELPWDGKTVGELVVRGPWVTGS 382
Query: 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
YYKD +T+E+ DGWF TGD+ + G ++I DR
Sbjct: 383 YYKDPEKTEEL-TRDGWFRTGDVAVIDEDGYIQITDR 418
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 99/448 (22%), Positives = 144/448 (32%), Gaps = 130/448 (29%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYGE A + + L G+ G + N E+++V AC+ + P+
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ +I+ A + +F VP G D ++P
Sbjct: 62 ERELGFILRQARARVLF-VPDEF-------------------RGFD--YAAMP------- 92
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
DDVA + YTSGTTG PKG + +H L+A V
Sbjct: 93 ----------------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLG 130
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ----GDNMKLMDD---------MA 340
P DV + PLAHI +G G G + L D +
Sbjct: 131 LTPDDVVLMPSPLAHI-----------TGFLYGLELPLLLGATVVLQDRWDPARALELIR 179
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
T A + +A +G L
Sbjct: 180 EHGVTFTMGATPF----LADLLAAADAAGPDLPSL------------------------- 210
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL--DEG 458
R G +P+ ++ G +V YGMTE + D
Sbjct: 211 -------------RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPD 257
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTK 515
D + G P E+++VD + P GE+ VRGP +F GY D
Sbjct: 258 DKRAATDGRPVPGVEVRIVD-------DDGNDVPPGEEGELQVRGPQLFLGYL-DPPDNT 309
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
E +DGWF TGD+G G L+I R
Sbjct: 310 EAFTDDGWFRTGDLGRLDADGYLRITGR 337
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 3e-34
Identities = 93/323 (28%), Positives = 156/323 (48%), Gaps = 15/323 (4%)
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
G+ I+ + ++ +N + PD + +I YTSGT+G PKG +LS+ NL +V
Sbjct: 277 KLGISIILFDDMTKNKTTNYK-IQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVP 335
Query: 288 ATLGTKF--YPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
+ F Y ++SYLP++HIYER ++ G + + D D+ +
Sbjct: 336 LCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGN 395
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL--VFN 403
+ VP+++NRIY I + + L+ L + +K G S + + + +
Sbjct: 396 ILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGF--SKFLEGITHISS 453
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
KIKDK+ + + +G LSP + + L + +GYG+TET+ I DN +
Sbjct: 454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTE 513
Query: 464 HVG---SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
+G SPN +++ + Y + D P+GE+ ++ IF GY+ ++ QTK E
Sbjct: 514 SIGGPISPNTKYKVRTWET----YKATDTL-PKGELLIKSDSIFSGYFLEKEQTKNAFTE 568
Query: 521 DGWFHTGDIGMWIPGGRLKIIDR 543
DG+F TGDI G L +DR
Sbjct: 569 DGYFKTGDIVQINKNGSLTFLDR 591
|
Length = 746 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-34
Identities = 83/305 (27%), Positives = 118/305 (38%), Gaps = 89/305 (29%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
D ATI +TSG+TG PK V + GN +AS G+ P D ++ LPL H+
Sbjct: 77 DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV------ 130
Query: 316 VMTVYSGVAV---GFYQGDNMKLMD---------DMAALRPTVFCSVPRLYNRIYAGITS 363
SG+A+ G + L D + T VP R+
Sbjct: 131 -----SGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL------ 179
Query: 364 AVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423
L + + A+L LGG +P+
Sbjct: 180 -------LESLGARWLSSLR--AVL--------------------LGG---------API 201
Query: 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQL-----DEGDNLSGHVGSPNAACEIKLVD 478
P +L+ + G + YGMTET+ SQ+ D+ G VG P E+++V+
Sbjct: 202 PPSLLEQAR-QRGIPLYPTYGMTETA---SQVATLKPDDFLAKLGSVGKPLPGRELRIVN 257
Query: 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ GEI VRGP +F GY T + DEDGWFHTGD+G G L
Sbjct: 258 PQD------------GEILVRGPSLFLGYLPQGGLTPPL-DEDGWFHTGDLGYLDAEGYL 304
Query: 539 KIIDR 543
++ R
Sbjct: 305 YVLGR 309
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 8e-34
Identities = 92/412 (22%), Positives = 136/412 (33%), Gaps = 90/412 (21%)
Query: 133 HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192
GI GS + L N E +++ HAC L L + + VQ +
Sbjct: 19 QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTD 78
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
S L E Q + + + GR +
Sbjct: 79 --------SLLEE-----------------------KDFQADSLDRIEAAGRYETSLSAS 107
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
D +AT+ +TSGTTG PK + N AS G+ F D ++ LPL HI
Sbjct: 108 FNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGL 167
Query: 313 ANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
+ + G + N +L++ +A R T VP NR+
Sbjct: 168 SILFRWLIEGATLRIVDKFN-QLLEMIANERVTHISLVPTQLNRL------LDEGGHNEN 220
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK 432
R LGG S + +++
Sbjct: 221 LRKI-------------------------------LLGG---------SAIPAPLIE-EA 239
Query: 433 ICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+G + YGMTET ++ E + VG P A EIK+ D
Sbjct: 240 QQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI---------KVDNKE 290
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GEI V+G + KGY + ++ GWF+TGDIG G L ++ R
Sbjct: 291 GHGEIMVKGANLMKGYLYQG-ELTPAFEQQGWFNTGDIGELDGEGFLYVLGR 341
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 2e-32
Identities = 128/469 (27%), Positives = 185/469 (39%), Gaps = 107/469 (22%)
Query: 104 VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163
+DG G TY + V +GL GI +G + L N PE+++ S
Sbjct: 43 IDGATGRV--YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGA 100
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
++ T P F P + +LI+ D++
Sbjct: 101 VTT----TANP---------------FYTPAEIAKQAKASG----AKLIITQSCYVDKLK 137
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFS---------PPK----PDDVATICYTSGTTGT 270
L GV ++T + FS P+ PDDV + Y+SGTTG
Sbjct: 138 GLAEDDGVTVVT----IDDPPEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGL 193
Query: 271 PKGAVLSHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERANQVM--TVYSGVA 324
PKG +L+H L+ SVA G F+ DV + LP+ HIY N V+ + G A
Sbjct: 194 PKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS-LNSVLLCGLRVGAA 252
Query: 325 VGFYQG-DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383
+ + L++ + + T+ VP + I AK
Sbjct: 253 ILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAI------------------------AK 288
Query: 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEG 442
SP+ ++ + I R + SGA+PL ++ D + + +G
Sbjct: 289 ----------SPVVEKYDLSSI--------RMVLSGAAPLGKELEDAFRAKLPNAVLGQG 330
Query: 443 YGMTETS-----CLISQLDEGDNLSGHVGS--PNAACEIKLVDVPEMNYT-SEDQPCPRG 494
YGMTE CL + SG G+ NA E+K+VD PE + +QP G
Sbjct: 331 YGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNA--ELKIVD-PETGASLPRNQP---G 384
Query: 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
EIC+RGP I KGY D T ID+DGW HTGDIG L I+DR
Sbjct: 385 EICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDR 433
|
Length = 537 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-31
Identities = 92/296 (31%), Positives = 123/296 (41%), Gaps = 63/296 (21%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A I YTSGTTG PKG +L+H L+ + A P DV ++ LPL HI Q
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI---NAQA 138
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376
+VY+ + VG L P F S R +++ VR G +F
Sbjct: 139 YSVYAALLVG-----------ATLVLLPR-F-SASRFWDQ--------VRKHGA---TVF 174
Query: 377 NAAYNAKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
N AM + K P DR +RF+ PL + +
Sbjct: 175 NLL-----GAMAAILMKQPPSPDDR----------DHPLRFVFGA--PLPAAIWPAFEER 217
Query: 435 FGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP- 492
FG ++ EGYGMTET I + GD G G P E+++VD + + P
Sbjct: 218 FGVKLVEGYGMTETGVPI--IAPGDPAPPGSCGRPRPGVEVRIVD-------EDGREVPP 268
Query: 493 --RGEICVR---GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GE+ VR +FKGYY T + +GWFHTGD G G L +DR
Sbjct: 269 GEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDEDGFLYFVDR 323
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-31
Identities = 97/304 (31%), Positives = 131/304 (43%), Gaps = 69/304 (22%)
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFYPSDVYISYLPLAHI 309
P DD+A I YTSGTTG KGA+LSHGNL S A TL +F P DV I LP+ H
Sbjct: 152 PRGADDLAAILYTSGTTGRSKGAMLSHGNL-LSNA-LTLVDYWRFTPDDVLIHALPIFHT 209
Query: 310 YERANQVMTVYSGVAVGFYQGDNM----KL-MDDMAALRP--TVFCSVPRLYNRIYAGIT 362
+ + V + VA+ G +M K D + AL P TV VP Y R
Sbjct: 210 HG-----LFVATNVAL--LAGASMIFLPKFDPDAVLALMPRATVMMGVPTFYTR------ 256
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+L P R + +R SG++P
Sbjct: 257 ------------------------LLQ----EPRLTR--------EAAAHMRLFISGSAP 280
Query: 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEM 482
L + + G + E YGMTET+ S +G+ +G VG P +++ D PE
Sbjct: 281 LLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PE- 338
Query: 483 NYTSEDQPCPRGEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539
P GEI V+GP +FKGY++ +T E DG+F TGD+G G +
Sbjct: 339 ----TGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVH 394
Query: 540 IIDR 543
I+ R
Sbjct: 395 IVGR 398
|
Length = 504 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-31
Identities = 100/356 (28%), Positives = 155/356 (43%), Gaps = 79/356 (22%)
Query: 207 PTVRLIV--VIGGIDDQIP--SLPITTGVQILTYSNLLSQGRSNLQPFSP--PKPDDVAT 260
P RL++ V+ + +P LP Q + +++ L++G QP + P+ DDVA
Sbjct: 159 PLKRLLINAVVKHVKKMVPAYHLP-----QAVKFNDALAKGAG--QPVTEANPQADDVAV 211
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVA------GATLGTKFYPSDVYISYLPLAHIYERAN 314
+ YT GTTG KGA+L+H NL+A++ G+ L ++ I+ LPL HI
Sbjct: 212 LQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEG---CEILIAPLPLYHI----- 263
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR-- 372
Y+ F M M + S PR + + V+ G +
Sbjct: 264 -----YA-----F----TFHCMAMMLIGNHNILISNPR-------DLPAMVKELGKWKFS 302
Query: 373 -----ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
LF A N + + +L F+ +K L SG L
Sbjct: 303 GFVGLNTLFVALCNNEA------------FRKLDFSALKLTL--------SGGMALQLAT 342
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ K G + EGYGMTETS ++S G +G P + K++D + N
Sbjct: 343 AERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNELPL 401
Query: 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ GE+CV+GP + KGY++ T E++D DGW TGDI + G ++I+DR
Sbjct: 402 GEV---GELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDR 454
|
Length = 562 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-30
Identities = 111/439 (25%), Positives = 167/439 (38%), Gaps = 86/439 (19%)
Query: 110 EYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY 169
E K +T+ E A V L G+ KG + L N E ++V HA ++V L
Sbjct: 24 EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLN 83
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
L + + + ++ A V+ + L
Sbjct: 84 TRLSREELLWQLDDAEVKCLITDDDFEAKL-----------------------------I 114
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+ ++ L++ + + D+VATI YTSGTTG PKG + ++GN S G+
Sbjct: 115 PGISVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSA 174
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFC 348
L D +++ +P+ HI + + +V G+ V + D K+ + T+
Sbjct: 175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIIS 234
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
V + R L ERL Y + + ML G P+P
Sbjct: 235 VVSTMLQR--------------LLERLGEGTYPSSFRCMLLGGGPAP------------- 267
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKIC--FGGRVTEGYGMTETSCLISQLDEGDNLS--GH 464
L+ C G V + YGMTET+ I L D L+ G
Sbjct: 268 -------------------KPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGS 308
Query: 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
G P CE+K+ P GEI V+GP + KGY E T+E +DGWF
Sbjct: 309 AGKPLFPCELKIEK-----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWF 362
Query: 525 HTGDIGMWIPGGRLKIIDR 543
TGDIG G L ++DR
Sbjct: 363 KTGDIGYLDEEGFLYVLDR 381
|
Length = 483 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 7e-30
Identities = 84/298 (28%), Positives = 126/298 (42%), Gaps = 60/298 (20%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
DDVA I YTSGTTG PKG + +H ++A+ A + + P V +++LPL H+ A
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV---AGM 140
Query: 316 VMTVYSGVAVGFYQGDNMKLM---DDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372
++ + + Y G + L+ D AA R A+
Sbjct: 141 QGSMNAPI----YTGATLVLLTRWDREAAAR--------------------AIERYRV-- 174
Query: 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN-KIKDKLGGRVRFMGSGASPLSPDVLDFL 431
N M L+ + + D ++ +G G + L P V + L
Sbjct: 175 ----THWTN-----------IVTMVVDLLAHPRFADYDLSSLKVVGGGGAALPPAVAERL 219
Query: 432 KICFGGRVTEGYGMTET-SCLISQLDEGDNL-SGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
K G EGYG+TET +C + + D +G P + +++D PE T E+
Sbjct: 220 KALTGLLYEEGYGLTETHTC--THFNPPDRPKPQCLGIPVFGTDARVID-PE---TGEEL 273
Query: 490 PCPR-GEICVRGPLIFKGYYKDEIQTKEV---IDEDGWFHTGDIGMWIPGGRLKIIDR 543
P GEI VRGP +FKGY+ T E +D +F TGD+G G +DR
Sbjct: 274 PPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDR 331
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 81/298 (27%), Positives = 116/298 (38%), Gaps = 48/298 (16%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD+A +T GTTG PK A SH N +A+ A L + P DV ++ LPL H
Sbjct: 1 PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFH------ 54
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
V +G + L P V + ++ R + SAV T
Sbjct: 55 -VGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPT------- 106
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
A Q L + S + R+ +GA+PL +V +
Sbjct: 107 ----VLAALLQVPLGDADISSL-----------------RYALTGAAPLPVEVARRFEAV 145
Query: 435 FGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPNAACEIKLVDV-PEMNYTSEDQPCP 492
G V EGYGMTE + + + G G VG +++ + + P
Sbjct: 146 TGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGE 205
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG-------MWIPGGRLK--II 541
G + +RGP +F GY D EDGW +TGD+G +W+ GR K II
Sbjct: 206 VGVLAIRGPNVFPGYLNDA-HNAGARLEDGWLNTGDLGRIDADGYLWL-TGRAKDLII 261
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-29
Identities = 96/466 (20%), Positives = 152/466 (32%), Gaps = 107/466 (22%)
Query: 105 DGTVGEYKWMTYGE--AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162
DG G ++ +TYG+ AR + + L G KG + +Y N PE +I A +
Sbjct: 32 DGEDGLFRELTYGDLRREVAR--LANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIG 89
Query: 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI 222
I + L +AV + + + T + L+ D +
Sbjct: 90 AIPAVVSPGLSAEAVADRIADLGPKVLIADDGTF-------RNGKEIALLEDA----DAV 138
Query: 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
S + L Y + + + P DD + YTSGTTG PKG V SHG +
Sbjct: 139 LSSVVVVPRLGLWYDEAVEKASEKFEFE-PLPADDPLFLLYTSGTTGKPKGIVHSHGGYL 197
Query: 283 ASVAGATL--------GTKFYPSDV-------YISYLPLAH-----IYERANQVMTVYSG 322
+ SD Y + PLA +Y+
Sbjct: 198 VEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGR--------- 248
Query: 323 VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382
FY + + + + + T+F + P R+
Sbjct: 249 ---PFYSPERL--WEALEKYKVTIFGTSPTFLRRL------------------------- 278
Query: 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEG 442
K + + S +R +GS PL+P+ ++ G + +
Sbjct: 279 MKLGLGEPYDLSS-----------------LRVLGSAGEPLNPEAFEWFYSALGVWILDI 321
Query: 443 YGMTET-SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVR 499
YG TET I+ +G G P ++ VD E P P GE+ VR
Sbjct: 322 YGQTETGMGFIAGRPPV--KNGSSGLPLPGYAVRRVD-------DEGNPVPPGVGELVVR 372
Query: 500 G--PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
P + Y+ D + KE W+ TGD G + R
Sbjct: 373 LPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGR 417
|
Length = 528 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-29
Identities = 105/424 (24%), Positives = 158/424 (37%), Gaps = 68/424 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
T+ E + L G+ G + + +NR E++ A + I+VP+ L
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P + ++V+ V + VP + +VV GG D +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDD----------SV 152
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
L Y +LL++ P P D A I YTSGTTG PKGAVL+H NL
Sbjct: 153 LGYEDLLAEAGPAHAPVDIPN-DSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNG 211
Query: 294 -FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFY---QGDNMKLMDDMAALRPT-VFC 348
SDV +PL HI + + + G Y D +L+D + A + T +F
Sbjct: 212 ADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFL 271
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
VP A+ QA+ + + P L
Sbjct: 272 -VP------------------------------AQWQAVCAEQQARPRDLAL-------- 292
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLS--GHV 465
R + GA+P S +L + F ++ +G TE S + L D + G V
Sbjct: 293 -----RVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
G ++VD MN + GEI R P + GY+ + T E GWFH
Sbjct: 348 GKVIPTVAARVVD-ENMNDVPVGEV---GEIVYRAPTLMSGYWNNPEATAEAFA-GGWFH 402
Query: 526 TGDI 529
+GD+
Sbjct: 403 SGDL 406
|
Length = 542 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-28
Identities = 103/442 (23%), Positives = 165/442 (37%), Gaps = 82/442 (18%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV- 192
G+ G + N PE A I+ P+ L P+ + ++ A + + +
Sbjct: 79 GVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLG 137
Query: 193 --PQT--LNSLLSCLSEVPTVRLIVVIGGIDD-------QIPSLPITTGVQILTYSNLLS 241
P T + L+ +P +R +V + +P + +IL + L+
Sbjct: 138 PFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELA 197
Query: 242 QGRSN-LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
+ + L P PDDVA +T GTTG PK A +HGN +A+ L P D
Sbjct: 198 RQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTV 257
Query: 301 ISYLPLAHIYERANQVM-TVYSGVAVGF-----YQGDNMKLMDD----MAALRPTVFCSV 350
LPL H+ + + G V Y+G ++ + + R V
Sbjct: 258 FCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGV 315
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P Y A Q + G + S
Sbjct: 316 P--------------------------TVYAALLQVPVDGHDIS---------------- 333
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-QLDEGDNLSGHVGSPN 469
+R+ GA+PL +V + G R+ EGYG+TE +C+ S +G+ G VG
Sbjct: 334 -SLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRL 392
Query: 470 AACEIKLVDV-PEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+++V + Y + G +C+ GP +F GY + K + EDGW +TGD
Sbjct: 393 PYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGD 451
Query: 529 IG-------MWIPGGRLK--II 541
+G W+ GR K II
Sbjct: 452 LGRIDADGYFWLT-GRAKDLII 472
|
Length = 632 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 86/359 (23%), Positives = 136/359 (37%), Gaps = 97/359 (27%)
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+++L L S P P +PDD A + TSG+TG PK VL+H N++A AG
Sbjct: 143 ALRVLAIEELRSAPP--DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTV 200
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVM----TVYSG-----VAVGFYQGDNMKLMDDMA 340
F P DV ++++PL H+ VM VY G V + D ++ +D +
Sbjct: 201 QVNGFTPDDVSLNWMPLDHV---GGIVMLHLRDVYLGCQQIHVPTDYILADPLRWLDLID 257
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
R T+ + P N +A + A+ + WD
Sbjct: 258 RYRVTITWA-P---NFAFALLNDALE------------------------RIEDRSWDL- 288
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVL-DFLKIC--FGGRVT---EGYGMTETSCLIS- 453
+R++ + + + FL++ +G +GM+ET ++
Sbjct: 289 ----------SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTY 338
Query: 454 --QLDEGDNLSGH------------------------VGSPNAACEIKLVDVPEMNYTSE 487
G + G +G P I++VD +
Sbjct: 339 SRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-------ED 391
Query: 488 DQPCPRGEIC---VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
P GE+ VRGP + GYY++ E EDGWF TGD+G ++ GRL I R
Sbjct: 392 GALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLG-FLHDGRLTITGR 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 97/325 (29%), Positives = 148/325 (45%), Gaps = 69/325 (21%)
Query: 236 YSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLG 291
+++ L++G Q F P K PDDVA + YT GTTG KGA L H N++A+V A L
Sbjct: 184 FNDALAEGAR--QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQ 241
Query: 292 TKF--YPSD---VYISYLPLAHIYE-RANQVMTVYSGVAVGFYQGDNMKLMD--DMAA-- 341
F P ++ LPL HI+ ++ + +G G N+ + + D+
Sbjct: 242 PAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTG-------GRNILIPNPRDIPGFI 294
Query: 342 --LRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
L+ P AV T L+NA N +P +D+
Sbjct: 295 KELKKYQVHIFP------------AVNT-------LYNALLN------------NPDFDK 323
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS-CLISQLDEG 458
L F+K+ GG G + P +L++ G +TEGYG++ETS +
Sbjct: 324 LDFSKLIVANGG-------GMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDA 375
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI 518
SG +G P + E+ + D + N +P GEIC+RGP + GY+ +T +V+
Sbjct: 376 TEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEP---GEICIRGPQVMAGYWNRPDETAKVM 431
Query: 519 DEDGWFHTGDIGMWIPGGRLKIIDR 543
DG+F TGD+G+ G KI+DR
Sbjct: 432 TADGFFRTGDVGVMDERGYTKIVDR 456
|
Length = 557 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 3e-27
Identities = 109/464 (23%), Positives = 170/464 (36%), Gaps = 127/464 (27%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI-----VDHACSAYSF 163
GE++ +TY EA + L+ G+S RP +I ++HA A +
Sbjct: 21 GEWRRVTYAEALRQVRAIAQALLDLGLSAE---------RP-LMILSGNSIEHALLALAA 70
Query: 164 ISV--------PLYDTLGPD--AVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRL 211
+ P Y L D +++I + + AVF +L + + V +
Sbjct: 71 MYAGVPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAAL--GLAGVPV 128
Query: 212 IVVIGGIDDQIPSL------PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ V G + P T V F+ PD VA +TS
Sbjct: 129 VAVRGAPGGPAIAFAALLATPPTAAVD---------------AAFAAVGPDTVAKYLFTS 173
Query: 266 GTTGTPKGAVLSHGNLIASVAG--ATLGTKFYPSDVYISYLPLAHIY-ERANQVMTVYSG 322
G+TG PK + +H L A+ A V + +LP H + N M +Y+G
Sbjct: 174 GSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTFGGNHNFNMVLYNG 233
Query: 323 VAVGFYQGDNMK----LMDDMAA-LR---PTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
G D+ K L ++ LR PTV+ +VP+ + + A+ LR R
Sbjct: 234 ---GTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFEM----LVDALERDAALRRR 286
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL--- 431
F R+R + + L DV D L
Sbjct: 287 FF----------------------------------KRLRLLFYAGAALPQDVWDRLQAL 312
Query: 432 --KICFGGRV--TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ G R+ T G G TET+ + + + SG +G P E+KLV
Sbjct: 313 AVRTT-GERIPMTSGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV---------- 361
Query: 488 DQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
P G E+ V+GP + GY++D T E DE+G++ GD
Sbjct: 362 ----PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGD 401
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 68/302 (22%), Positives = 111/302 (36%), Gaps = 71/302 (23%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
DVA + GTTG PK +H + + S + P VY++ LP AH N
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAH-----N-- 192
Query: 317 MTVYSGVAVG-FYQGDNMKLMDD---MAAL------RPTVFCSVPRLYNRIYAGITSAVR 366
T+ S +G G + L A + T VP L N
Sbjct: 193 FTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLE------- 245
Query: 367 TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
+ WD+ +R + G +PLSP+
Sbjct: 246 ---------------------------AAEWDQADL--------SSLRVIQVGGAPLSPE 270
Query: 427 VLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH-VGSP-NAACEIKLVDVPEMNY 484
+ ++ G + + +GM E ++LD+ ++ G P + A EI++VD
Sbjct: 271 LARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIMRTQGRPISPADEIRIVDD----- 325
Query: 485 TSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541
+ +P P GE+ RGP +GYY+ +DG++ TGD+ G +++
Sbjct: 326 --QGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGYYRVV 383
Query: 542 DR 543
R
Sbjct: 384 GR 385
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 58/139 (41%), Positives = 80/139 (57%), Gaps = 14/139 (10%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQ--LDEGDNLSGHVG-- 466
++ +GSGA+PL ++ + + F G + +GYGMTE+S + + + E D G VG
Sbjct: 276 SLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRL 335
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
PN E K+VD PE T E P P GE+ VRGP + KGY + T E ID+DGW
Sbjct: 336 VPNV--EAKIVD-PE---TGESLP-PNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWL 388
Query: 525 HTGDIGMWIPGGRLKIIDR 543
HTGD+G + G L I+DR
Sbjct: 389 HTGDLGYFDEDGYLFIVDR 407
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 8e-26
Identities = 131/504 (25%), Positives = 202/504 (40%), Gaps = 99/504 (19%)
Query: 74 DHPEIGTTHDNFVRAVDTFRD---YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGL 130
D + T + F +V F D Y G K +TY EA + + L
Sbjct: 20 DLEQFRTVAEVFATSVAKFADRPAYHSFG------------KTITYREADQLVEQFAAYL 67
Query: 131 IYH-GISKGSCIGLYFVNRPEWLIVDHA--CSAYSFISV-PLYDT---------LGPDAV 177
+ + KG + L N ++ I + + ++V PLY G +
Sbjct: 68 LGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVL 127
Query: 178 KYIVNHA-SVQAVFC---VPQTLNSLLSCLSEVPTVRLI-VVIGGIDDQIPSLPITTGVQ 232
I N +VQ V V Q + + L + P L+ V+ + +P I ++
Sbjct: 128 VVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGAIR 187
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATL 290
+ L+ GR + P +PDD+A + YT GTTG KGA+L+H NL+A++ A L
Sbjct: 188 ---FREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWL 244
Query: 291 GT--KFYP-SDVYISYLPLAHIYE-RANQ-VMTVYSGVAVGFYQGDNMK-LMDDMAALRP 344
K +V I+ LPL HI+ AN V G +M + ++ R
Sbjct: 245 AGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRF 304
Query: 345 TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
T F V L+N L N +P +D++ F+
Sbjct: 305 TAFTGVNTLFNG------------------LLN----------------TPGFDQIDFSS 330
Query: 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLS 462
+K LGG + S V + K G + E YG+TETS I+ L + +
Sbjct: 331 LKMTLGGGMAVQRS--------VAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEY-N 381
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVID 519
G +G P + + + D GEI C++GP + KGY+K +T +V+D
Sbjct: 382 GSIGLPIPSTDACIKD-------DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMD 434
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDR 543
DGW HTGDI G + I+DR
Sbjct: 435 ADGWLHTGDIARMDEQGFVYIVDR 458
|
Length = 560 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 76/299 (25%), Positives = 121/299 (40%), Gaps = 75/299 (25%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLGTKFYPSD--VYISYLPLAHIY 310
PD +A +TSG+TG PK + +H L A+ T F + V + +LP H +
Sbjct: 208 PDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP--FLAEEPPVLVDWLPWNHTF 265
Query: 311 -ERANQVMTVYSGVAVGFYQGDNMK----LMDDM-AALR---PTVFCSVPRLYNRIYAGI 361
N + +Y+G G D+ K D+ LR PTV+ +VP+ + +
Sbjct: 266 GGNHNLGIVLYNG---GTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKG----WEML 318
Query: 362 TSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS 421
A+ LR R F R++ + +
Sbjct: 319 VPALERDAALRRRFF----------------------------------SRLKLLFYAGA 344
Query: 422 PLSPDVLDFL-----KICFGGRV--TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474
LS DV D L C G R+ G GMTET+ + + +G++G P CE+
Sbjct: 345 ALSQDVWDRLDRVAEATC-GERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEV 403
Query: 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
KLV V + E+ V+GP + GY++ T E DE+G++ +GD ++
Sbjct: 404 KLVPV-------GG----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFV 451
|
Length = 614 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 98/426 (23%), Positives = 151/426 (35%), Gaps = 79/426 (18%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TYGE G+ L GI + + + L ++ PE+ + VP+ L P
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234
D +Y +N + + + + L L + P +R ++V+G + P L
Sbjct: 92 DDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVG------GAGPGA-----L 140
Query: 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATLG 291
+Y+ L++ L+ + DD+A Y+SG+TG PKG V H +++ + A LG
Sbjct: 141 SYAQLIATAAEELEA-AATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVLG 199
Query: 292 TKFYPSDVYISYLPLAHIYERANQV-MTVYSGVAVGFYQG----DNMKLMDDMAALRPTV 346
DV S L Y N + + G D + + +PTV
Sbjct: 200 IT--EDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAV--FATIERYKPTV 255
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
F VP LY AML+
Sbjct: 256 FFGVPTLYA------------------------------AMLAAPEKPERDLS------- 278
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465
+R S L ++ K FG + +G G TE + +S G G
Sbjct: 279 -----SLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNR-PGAVKYGTS 332
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDG 522
G P E+KLVD + + GEI VRG GY+ +T+E
Sbjct: 333 GKPVPGYEVKLVD-------EDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGE 384
Query: 523 WFHTGD 528
W TGD
Sbjct: 385 WTRTGD 390
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-25
Identities = 97/320 (30%), Positives = 150/320 (46%), Gaps = 60/320 (18%)
Query: 234 LTYSNLLSQGRSNLQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATL 290
+++ + L +GR +Q P P+D+A + YT GTTG KGA+L+H N++A++ A A
Sbjct: 184 ISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAY 242
Query: 291 GTKFYP-SDVYISYLPLAHIYE-RANQVMTVYSGVAVGFYQGDNMKLMD--DMAALRPTV 346
G +P ++ ++ LPL HI+ N ++ + G G N+ + + D+
Sbjct: 243 GPLLHPGKELVVTALPLYHIFALTVNCLLFIELG-------GQNLLITNPRDIPGF---- 291
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
V L + IT V T LFNA N + + L F+ +K
Sbjct: 292 ---VKELKKYPFTAIT-GVNT-------LFNALLN------------NEEFQELDFSSLK 328
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
+GG + V + G + EGYG+TE S L+S +L + G
Sbjct: 329 LSVGG--------GMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPY--DLDYYSG 378
Query: 467 S---PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523
S P + EIKLVD + N +P GE+ V+GP + GY++ T EVI +DGW
Sbjct: 379 SIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYWQRPEATDEVI-KDGW 433
Query: 524 FHTGDIGMWIPGGRLKIIDR 543
TGDI + G L+I+DR
Sbjct: 434 LATGDIAVMDEEGFLRIVDR 453
|
Length = 560 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-24
Identities = 128/490 (26%), Positives = 200/490 (40%), Gaps = 88/490 (17%)
Query: 75 HPEIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH 133
HP + D + AV F + + G +D + G ++Y E + +GL YH
Sbjct: 29 HPPVPLPSDPNLDAVSFIFSHHNHNGDTALIDSSTGFS--ISYSELQPLVKSMAAGL-YH 85
Query: 134 --GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191
G+ +G + L N + ++ A + I + + +K V SV F
Sbjct: 86 VMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFT 145
Query: 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
P+ + L VP + + D + P + L+ + P
Sbjct: 146 SPENVEKLSPL--GVPVI-GVPENYDFDSKRIEFP--------KFYELIK-EDFDFVPKP 193
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF------YPS--DVYISY 303
K DDVA I Y+SGTTG KG VL+H NLIA V L +F YP +VY++
Sbjct: 194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVE---LFVRFEASQYEYPGSDNVYLAA 250
Query: 304 LPLAHIYERANQVMTVYS-GVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIY 358
LP+ HIY + V+ + S G + F D +K++D + T F VP I
Sbjct: 251 LPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVID---RFKVTHFPVVPP----IL 303
Query: 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGS 418
+T + G V +K +
Sbjct: 304 MALTKKAKGVCGE-----------------------------VLKSLKQ--------VSC 326
Query: 419 GASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH--VG--SPNAACE 473
GA+PLS + DF++ +GYGMTE++ + ++ + LS + VG +PN +
Sbjct: 327 GAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNM--Q 384
Query: 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
K+VD + P GE+ ++GP + KGY + T+ ID+DGW TGDI +
Sbjct: 385 AKVVD---WSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFD 441
Query: 534 PGGRLKIIDR 543
G L I+DR
Sbjct: 442 EDGYLYIVDR 451
|
Length = 560 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-23
Identities = 88/333 (26%), Positives = 136/333 (40%), Gaps = 92/333 (27%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
PDD+A I ++SG+TG PKG +L+H NL+ ++ + DV++S++PL H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTH------ 158
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLY----NRIYAGITSAVRTSGG 370
M + G N LM +F P L+ ++ A I S+
Sbjct: 159 -DMGLIGFHLTPTALGINQYLMP------TRLFIRRPLLWLDKASQHRATILSSP----- 206
Query: 371 LRERLFNAAYNAKKQAMLS--GKNPSPMWD----RLVFNKIKDKLGGRVRFMGSGASPLS 424
N Y + +L WD RL+FN GA P+S
Sbjct: 207 ------NFGY----KYLLKHFKTEKIIDWDLSSVRLIFN---------------GAEPIS 241
Query: 425 PDV-LDFLKIC--FGGR---VTEGYGMTETSCLIS------------------------- 453
D+ +FL+ FG R + YG+ E + +S
Sbjct: 242 ADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKII 301
Query: 454 QLDEGDNLSG---HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510
++D ++ + VGSP CEI++VD + D+ G I ++G + GYY +
Sbjct: 302 EIDPKNSDAISFVEVGSPIDGCEIRIVD--DAGEVLPDRTI--GHIQIKGDNVTSGYYNN 357
Query: 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
TK+ I DGW TGD+G ++ GRL I R
Sbjct: 358 PEATKKSITPDGWLKTGDLG-FLRNGRLVITGR 389
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 97/438 (22%), Positives = 139/438 (31%), Gaps = 127/438 (28%)
Query: 115 TYGE--AGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
TY E R + L G+S G + L + PE + AC ++V L L
Sbjct: 12 TYRELHDLANRF--ANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLL 69
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
P +++I +DD +L +T
Sbjct: 70 TPQDLEHI-------------------------------------LDDSGAALLVT---- 88
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGAT 289
+ DD+A YTSGTTG PKG + H + + A
Sbjct: 89 ---------------------EADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFAREL 127
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG--DNMKLMDDMAALRPTV 346
LG + P D S L Y N ++ ++SG + G ++D +A RPTV
Sbjct: 128 LGLQ--PGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTV 185
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
VP LY A+ SG LF
Sbjct: 186 LFGVPALYR--------ALLESGAGSAPLF------------------------------ 207
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
VR S L + + G + +G G TE + G G G
Sbjct: 208 ----RSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTG 263
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
P E +LVD G++ VRGP + GY+ +T+ + DGW T
Sbjct: 264 RPVPGYEARLVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRT 318
Query: 527 GDI------GMWIPGGRL 538
GD G + GR
Sbjct: 319 GDRFSRDADGWYRYQGRA 336
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 9e-23
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA----YSFISVPLY 169
+T+ + + GL G+ +G + L N E+ V C A S + P Y
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAAN-PSY 69
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
PD + + + + + +FC P L+ + E+ V I+V+ D +
Sbjct: 70 T---PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLR----- 121
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA---SVA 286
++ L L ++ DD A + Y+SGTTG PKG +LSH N+IA V
Sbjct: 122 -IEDLLEPRLGAED-EFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQ 179
Query: 287 GATLGTKFYPSDVYISYLPLAHIY 310
G +DV +++LP H Y
Sbjct: 180 DTLKGNPDSSNDVVLTFLPFYHAY 203
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 86/311 (27%), Positives = 122/311 (39%), Gaps = 65/311 (20%)
Query: 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302
RS + P PD A I YTSGTTG PKG VLS + A + ++ DV +
Sbjct: 116 ARSWHRYPEPD-PDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVH 174
Query: 303 YLPLAHIY----------ERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPR 352
LPL H++ N+ + + Q + T++ VP
Sbjct: 175 GLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQA---------LSEGGTLYFGVPT 225
Query: 353 LYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR 412
+++RI A +A G RL ++SG P+ VF+++ L G
Sbjct: 226 VWSRIAADPEAARALRGA---RL-----------LVSGSAALPV---PVFDRLAA-LTGH 267
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472
R E YGMTET +S +G+ G VG P A
Sbjct: 268 -------------------------RPVERYGMTETLITLSTRADGERRPGWVGLPLAGV 302
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
E +LVD + + GE+ VRGP +F GY T DGWF TGD+ +
Sbjct: 303 ETRLVDEDGGPVPHDGETV--GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360
Query: 533 IPGGRLKIIDR 543
P G +I+ R
Sbjct: 361 DPDGMHRIVGR 371
|
Length = 471 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 104/431 (24%), Positives = 164/431 (38%), Gaps = 80/431 (18%)
Query: 122 ARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180
R +G+++ GI +G + L N +L + A S + +P+ L D V YI
Sbjct: 35 QRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYI 94
Query: 181 VNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240
+ A + + V + +++ V +VI S L
Sbjct: 95 LGDAGAKLLL-VDEEFDAI------VALETPKIVIDAAAQA--------------DSRRL 133
Query: 241 SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
+QG + P + P D+ + YTSGTT PKG + S+GNL + S+
Sbjct: 134 AQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERL 193
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAG 360
+ PL H+ G+AV + G +++ + V ++ R
Sbjct: 194 LVVGPLYHVGAFD------LPGIAV-LWVGGTLRIHREFDP--EAVLAAIER-------- 236
Query: 361 ITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA 420
RL A+ A MLS P DR + + +GG G
Sbjct: 237 ------------HRL-TCAWMAP--VMLSRVLTVPDRDRFDLDSLAWCIGG-------GE 274
Query: 421 SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVD 478
+ DF ++ R + YG+TET + ++ G + G G A EI++ D
Sbjct: 275 KTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD 334
Query: 479 ------VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW 532
P M GEIC+RGP + KGY+KD +T E WF +GD+G
Sbjct: 335 GAGRWLPPNMK----------GEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYL 383
Query: 533 IPGGRLKIIDR 543
G L + DR
Sbjct: 384 DEEGFLYLTDR 394
|
Length = 497 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 8e-22
Identities = 92/395 (23%), Positives = 145/395 (36%), Gaps = 82/395 (20%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L ++ +++ H + + + L+ +P + +V ID P P +
Sbjct: 102 LDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLV----IDVDDPEYPGGRFI 157
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH-GNLIASVAGATL 290
L Y L+ G + P D + YTSGTTG PKG V H G + +++ L
Sbjct: 158 GALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN-IL 216
Query: 291 GTKFYPSDVYISYLPLAHIYERANQ-----VMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
VY+ LP+ H N + +G V + D + D + T
Sbjct: 217 AWGMPKHPVYLWTLPMFH----CNGWCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVT 272
Query: 346 VFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405
+C P + + A NA +
Sbjct: 273 HYCGAPIVLS----------------------ALINAPAEW------------------- 291
Query: 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET---SCLISQLDEGDNLS 462
+ + V M +GA+P V+ ++ G +T YG+TET + + + E D L
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKME-EIGFDLTHVYGLTETYGPATVCAWQPEWDALP 349
Query: 463 --------GHVGSPNAACE-IKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYY 508
G E + ++D M QP P GEI RG ++ KGY
Sbjct: 350 LDERAQLKARQGVRYPLQEGVTVLDPDTM------QPVPADGETIGEIMFRGNIVMKGYL 403
Query: 509 KDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
K+ T+E GWFHTGD+ + P G +KI DR
Sbjct: 404 KNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDR 437
|
Length = 545 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 1e-21
Identities = 82/297 (27%), Positives = 132/297 (44%), Gaps = 53/297 (17%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERAN 314
D+ + ++SGTTG KG +L+H NL+A++ + ++G + V + +P HI
Sbjct: 185 DLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHI----- 239
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
Y + N + M+ F + A IT V + +
Sbjct: 240 -----YGITGICCATLRNKGKVVVMSRFELRTF---------LNALITQEVSFAPIVPPI 285
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
+ N N P+ + +K+K ++ + + A+PL+P++L +
Sbjct: 286 ILNLVKN-------------PIVEEFDLSKLK------LQAIMTAAAPLAPELLTAFEAK 326
Query: 435 FGG-RVTEGYGMTETSCLISQLDEGDNLSGH-------VGSPNAACEIKLVDVPEMNYTS 486
F G +V E YG+TE SC+ L GD GH VG E+K +D
Sbjct: 327 FPGVQVQEAYGLTEHSCI--TLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLP 384
Query: 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
++ P GE+CVR + +GYY ++ +T IDEDGW HTGDIG G + I+DR
Sbjct: 385 KNTP---GELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDR 438
|
Length = 546 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 3e-21
Identities = 77/360 (21%), Positives = 131/360 (36%), Gaps = 80/360 (22%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
RL++ + ++ L + + L + P +P PDD+A + YTSG+T
Sbjct: 73 ARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGST 132
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH---IYERANQVMTVYSG--- 322
G PKG V++H +L+ +A P D + + L+ + E + +G
Sbjct: 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEE---IFGALLAGATL 189
Query: 323 -VAVGFYQGDNMKLMDDMAALRP-TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380
V + D+ L+ + A P TV P L + A
Sbjct: 190 VVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLAA--------------------- 228
Query: 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRV 439
A A+ S +R + G L+P ++D + G R+
Sbjct: 229 -ALPPALAS-----------------------LRLVILGGEALTPALVDRWRARGPGARL 264
Query: 440 TEGYGMTETSC-----LISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR- 493
YG TET+ L+ D +G P A + ++D + +P P
Sbjct: 265 INLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLD-------DDLRPVPVG 317
Query: 494 --GEICVRGPLIFKGYYKDEIQTKEVI--------DEDGWFHTGDIGMWIPGGRLKIIDR 543
GE+ + GP + +GY T E D + TGD+ ++P G L+ + R
Sbjct: 318 VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGR 377
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 5e-21
Identities = 68/309 (22%), Positives = 103/309 (33%), Gaps = 83/309 (26%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP----LAHIY 310
PDD+A I +TSG+TG PKG +SH NL + + DV+ + P L+
Sbjct: 96 PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFDLS--- 152
Query: 311 ERANQVMTVYSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
V ++ +A G D + L + + TV+ SVP
Sbjct: 153 -----VFDLFPALASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVP--------SFA 199
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
S + S L PS R F G
Sbjct: 200 SLLLLSRELNPESL----------------PSL---RTFL------------FCGE---V 225
Query: 423 LSPDVLDFLKICF-GGRVTEGYGMTET--SCLISQLDE---GDNLSGHVGSPNAACEIKL 476
L + L+ F R+ YG TE + ++ N +G P +
Sbjct: 226 LPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALI 285
Query: 477 VDVPEMNYTSEDQ----PCPRGEICVRGPLIFKGYYKDEIQTKEVIDED---GWFHTGDI 529
+D ED P GE+ + GP + GY + +T + +D W+ TGD+
Sbjct: 286 LD--------EDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDL 337
Query: 530 GMWIPGGRL 538
G L
Sbjct: 338 VYLEDDGLL 346
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 4e-20
Identities = 42/98 (42%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 439 VTEGYGMTETSCLISQLDEGDNLS---GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR-- 493
VT YGMTETS + +Q D L VG E+K+VD PE + PR
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETG-----ETVPRGE 397
Query: 494 -GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
GE+C RG + KGY+ D +T E ID DGW HTGD+
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLA 435
|
Length = 559 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 91.5 bits (227), Expect = 1e-19
Identities = 111/451 (24%), Positives = 178/451 (39%), Gaps = 86/451 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y + ++ L G+ G + L + E+++ A S + VPL D
Sbjct: 44 ISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPL-DPAL 102
Query: 174 PDAVKYI-VNHASVQAVFCVPQTLNSLLSCLSEVPTVR---LIVVIGGIDDQIPSLPITT 229
P A + + A + V +++ PT R L V +GG
Sbjct: 103 PIAEQRVRSQAAGARVVL-----IDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVH 157
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
L + + S + +PDD A I +T GTTG PK +H N+ +SV
Sbjct: 158 ----LDAATEPTPATSTPEGL---RPDD-AMIMFTGGTTGLPKMVPWTHANIASSVRAII 209
Query: 290 LGTKFYPSDVYISYLPLAHIYER-ANQVMTVYSGVAV-----GFYQGDNMKLMDDMAALR 343
G + P D ++ +PL H + A + T+ SG AV G + DD+ A+
Sbjct: 210 TGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHT--FWDDIKAVG 267
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
T + +VP ++ +I L ER A + SG+ P+ +
Sbjct: 268 ATWYTAVPTIH-QI-------------LLER-------AATEP--SGRKPAAL------- 297
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE-----TSCLISQLDEG 458
RF+ S ++PL+ + L+ F V +GMTE T+ I + +
Sbjct: 298 ----------RFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT 347
Query: 459 DN---LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEI 512
+N +G VG A +I++V S+ P P GE+ +RG + +GY D
Sbjct: 348 ENPVVSTGLVGRSTGA-QIRIVG-------SDGLPLPAGAVGEVWLRGTTVVRGYLGDPT 399
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
T DGW TGD+G G L I R
Sbjct: 400 ITAANF-TDGWLRTGDLGSLSAAGDLSIRGR 429
|
Length = 534 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 2e-19
Identities = 92/331 (27%), Positives = 141/331 (42%), Gaps = 58/331 (17%)
Query: 223 PSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
P PI +I+TY++ + +G + + PDDVA + YT GTTG PKGA+L+HGNL
Sbjct: 160 PQAPIPADPRIVTYADFV-KGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLT 218
Query: 283 ASVA-----GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYS---GVAVGFYQG-DNM 333
++V+ G + I LPL HIY A V+ + S G + +Q D
Sbjct: 219 SAVSIYDVWGKPSRATRGDVERVICVLPLFHIY--ALTVILLRSLRRGDLISLHQRFDVA 276
Query: 334 KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393
+ D+ R TVF VP ++ A+ L +R ++
Sbjct: 277 AVFRDIEEKRATVFPGVPTMW--------IALANDPSLEKRDLSSLATI----------- 317
Query: 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET-SCLI 452
GSG +PL +V +F + G ++ G+GMTET S
Sbjct: 318 -----------------------GSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGT 354
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512
EG + G +G E+ +V + + T P GE+ +RGP + +GY+
Sbjct: 355 GHPPEGPDKPGSIGLMLPGIELDVVSLDDP--TKVLPPGEVGELRIRGPNVTRGYWNRPE 412
Query: 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
++ E F TGDIG G ++DR
Sbjct: 413 ESAEAF-VGDRFLTGDIGYMDTDGYFFLVDR 442
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 8e-19
Identities = 86/340 (25%), Positives = 123/340 (36%), Gaps = 80/340 (23%)
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA-SVAG-AT 289
LT L + + PDD IC+TSGTTG PKG +SH LI S+A A
Sbjct: 148 SFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAI 207
Query: 290 LGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL-MDDMAALRPTVFC 348
+G + DVY+ PL HI ++ + + G + K + + T
Sbjct: 208 VG--YGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMI 265
Query: 349 SVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408
+VP + A + S R S K
Sbjct: 266 TVP----AMMADLISLTRKSMT------------------------------------WK 285
Query: 409 LGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTET-----------------SC 450
+ VR + +G LS +L K F ++ YGMTE
Sbjct: 286 VFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQ 345
Query: 451 LISQLDEGDNLSGH------VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIF 504
+ +++ + S H VG P E+K+ D+ G I RGP +
Sbjct: 346 TLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI---------GLDESSRVGRILTRGPHVM 396
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRLKIIDR 543
GY+ +T V+ DGW TGDIG WI G L +I R
Sbjct: 397 LGYWGQNSETASVLSNDGWLDTGDIG-WIDKAGNLWLIGR 435
|
Length = 563 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 8e-19
Identities = 100/411 (24%), Positives = 166/411 (40%), Gaps = 65/411 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY + SGL G+++G + +Y R E + + + VP+ L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ V +I+ +V+ + + L+ L L +R ++++G P G +
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHP---GEEP 142
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA---SVAGATL 290
++ LL+ G + P P D+A I YTSG+TG PKG VLSH NL+A SVA
Sbjct: 143 ASWPKLLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATY-- 198
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
+ P D ++ LPL+ Y NQ+ T FY G + L D + L V ++
Sbjct: 199 -LENRPDDRLLAVLPLSFDYGF-NQLTT-------AFYVGATVVLHDYL--LPRDVLKAL 247
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
+ + I G+ + P+W +L +
Sbjct: 248 EK--HGI-TGLAAV-----------------------------PPLWAQLAQLDWPESAA 275
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLD--EGDNLSGHVGS 467
+R++ + + L L+ R+ YG+TE + + L E D +G
Sbjct: 276 PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE-AFRSTYLPPEEVDRRPDSIGK 334
Query: 468 --PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKE 516
PNA E+ ++ SE P GE+ RG L+ GY+ D +T E
Sbjct: 335 AIPNA--EVLVLR----EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAE 379
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 1e-18
Identities = 73/300 (24%), Positives = 115/300 (38%), Gaps = 62/300 (20%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
P+ V+ I +TSGT+G PKG +LS NL + + + ++ P+ HI
Sbjct: 134 PERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLIT 193
Query: 315 QVMTVYSG-----VAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
V V + V+ GF + + D A L T + VP++ A R
Sbjct: 194 SVRPVLAVGGSILVSNGFEPKRTLGRLGDPA-LGITHYFCVPQM--------AQAFRAQP 244
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
G F+AA A+ +G P + D+L
Sbjct: 245 G-----FDAAALRHLTALFTGGAPHA----------------------------AEDILG 271
Query: 430 FLKICFGGRVTEGYGMTETSCLISQ-LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTS 486
+L G + +G+GM+E + +D +G G P + ++VD
Sbjct: 272 WLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-------D 322
Query: 487 EDQPCPRG---EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ CP G E+ +RGP + GY++ T DGWF TGDI G ++DR
Sbjct: 323 QGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDR 382
|
Length = 488 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 2e-18
Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
GI+ +G N E L V A + + PL L D + +I+NHA + + P
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119
Query: 194 QTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP 253
+ L L E P VR +V IG D + + G+++ +Y LL GRS + +
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLD-GRSTVYDWPEL 178
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNL 281
A ICY++GTTG PKG V SH +L
Sbjct: 179 DETTAAAICYSTGTTGAPKGVVYSHRSL 206
|
Length = 576 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 4e-18
Identities = 82/316 (25%), Positives = 108/316 (34%), Gaps = 87/316 (27%)
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
D A YTSGTTG PK A++SH + + A P DV LPL H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHS------- 134
Query: 317 MTVYSGVAVGFYQGDNMKL---------MDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
+ G + G ++ L D+ T F V L
Sbjct: 135 NALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGEL-------------- 180
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM-GSGASPLSPD 426
R L N P DR +R + G+G L PD
Sbjct: 181 ---CR-YLLNQ--------------PEKPDDR----------DHPLRKIIGNG---LRPD 209
Query: 427 VLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVG-SPNAACEIKLVDV----P 480
+ D K FG R+ E YG TE + L N G VG P AA + DV P
Sbjct: 210 IWDEFKERFGVPRIVEFYGSTEGNVGFINLF---NKPGAVGRLPPAAIAVVKYDVETEEP 266
Query: 481 EMNYTSEDQPCPRGEICVRGPLI--------FKGYYKDEIQTKEVI-----DEDGWFHTG 527
+ P GE+ G L+ F GY DE K+++ D +F+TG
Sbjct: 267 IRDANGFCIKVPPGEV---GLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTG 323
Query: 528 DIGMWIPGGRLKIIDR 543
D+ G +DR
Sbjct: 324 DLVRRDGFGYFYFVDR 339
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 87.0 bits (215), Expect = 4e-18
Identities = 81/297 (27%), Positives = 133/297 (44%), Gaps = 59/297 (19%)
Query: 256 DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-----PSDVYISYLPLAHIY 310
+D+A + YT GTTG PKG +L+H NL V+ +G ++ +V + LP H+Y
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNL---VSNTLMGVQWLYNCKEGEEVVLGVLPFFHVY 262
Query: 311 -ERANQVMTVYSGVAVGFYQGDNMKLM-DDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
A +++ G + +MK++ + + + T+F P +Y
Sbjct: 263 GMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIY-------------- 308
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
A+L+ SP+ +K+ +R SG++PL +V
Sbjct: 309 ----------------IALLN----SPL--------LKEYDISSIRACISGSAPLPVEVQ 340
Query: 429 DFLKICFGGRVTEGYGMTETSCLI-SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
+ + GG++ EGYG+TE+S + S + G +G P E ++ + T E
Sbjct: 341 EKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLE----TGE 396
Query: 488 D-QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
P GEI V+GP I KGY+ +T V+ +DGW HTGD+G G + DR
Sbjct: 397 ALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDR 452
|
Length = 563 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 1e-17
Identities = 83/444 (18%), Positives = 135/444 (30%), Gaps = 81/444 (18%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
V + +TY E + LI G+ G + + E ++ A VP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306
Query: 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
L + + YI+ + + L L + +DD + +P
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLT-QAHLRVDDVGLPGLA----------LDDALSEIPD 355
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SV 285
T + D +A I YTSG+TG PKG + H L +
Sbjct: 356 TDPIPQAL------------------LGDALAYIIYTSGSTGQPKGVRIEHRALANLLND 397
Query: 286 AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPT 345
AGA G D ++ L+ V ++ + G + L + + P
Sbjct: 398 AGARFGLD--ADDRVLALASLSFDAS----VFEIFGALLEGAR----LVLAPALLQVDPA 447
Query: 346 VFCSVPRLYNRI-YAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
L + GIT + LR L A R +
Sbjct: 448 ------ALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI--------SPCERLRQLL-- 491
Query: 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS--QLDEGDNLS 462
GG A PL+ R+ YG TE + +
Sbjct: 492 ----SGGE-------ALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESR 540
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVID 519
+G P A ++ ++D +P P GE+ + G + GY T E
Sbjct: 541 VPIGRPVANTQLYILD-------QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFI 593
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDR 543
+ TGD+ + G L+ + R
Sbjct: 594 ALRLYRTGDLARPLADGALEYLGR 617
|
Length = 642 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 63/298 (21%), Positives = 102/298 (34%), Gaps = 81/298 (27%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIA---SVAGATLGTKFY----PSDVYISYLPLA 307
DD+A I YTSG+TG PKG +LSH NL A S+A Y D ++ LP +
Sbjct: 1 DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQ-------YLELTEDDRILAVLPFS 53
Query: 308 HIYERANQVMTVYSG--VAVGF---YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGIT 362
Y + + G + + + D ++ +A R T F VP +
Sbjct: 54 FDYGLSQLLTAFRVGGTLVLESRFAFPRD---VLKHLAKERITGFAGVPTTW-------- 102
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
+L + +R++ +
Sbjct: 103 ----------------------AQLLRLDPLARE------------DFPSLRYLTNAGGA 128
Query: 423 LSPDVLDFLKICF-GGRVTEGYGMTE-TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480
L + L+ F ++ YG+TE +E D +G E+ +VD
Sbjct: 129 LPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVELWVVD-- 186
Query: 481 EMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDE-----DGWFHTGDIG 530
+ C GE+ RG + KGY+ D T E + + +TGD+
Sbjct: 187 -----EDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLV 239
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 4e-17
Identities = 96/375 (25%), Positives = 147/375 (39%), Gaps = 95/375 (25%)
Query: 213 VVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGT 270
VV+G + G+++LT ++LL+ P P + DD+A + TSG+TG+
Sbjct: 112 VVVGEPFLAAAPVLEEKGIRVLTVADLLAAD-----PIDPVETGEDDLALMQLTSGSTGS 166
Query: 271 PKGAVLSHGNLIASVAGATLGTKFYP-SDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ 329
PK ++HGNL A+ + +F +DV +S+LPL H M + + V Y
Sbjct: 167 PKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHD-------MGMVGFLTVPMYF 219
Query: 330 GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389
G + + M LR + L ++ +T+A N AY A+L+
Sbjct: 220 GAELVKVTPMDFLRDPL--LWAELISKYRGTMTAAP-----------NFAY-----ALLA 261
Query: 390 GKNPSPMWDRLVFNKIKDKLGGR-----VRFMGSGASPLSPDVL-DFLKIC--FGGR--- 438
R + + K G +RF +GA P+ P + D L FG R
Sbjct: 262 ---------RRLRRQAKP---GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEA 309
Query: 439 VTEGYGMTETSCLIS--QLDEG--------DNLS----------GHV------GSPNAAC 472
+ YGM E + +S G D L+ G+ G P
Sbjct: 310 ILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGL 369
Query: 473 EIKLVDVPEMNYTSED-QPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ED Q P G I +RG + G Y D DGW TGD
Sbjct: 370 EVRVVD--------EDGQVLPPRGVGVIELRGESVTPG-YLTMDGFIPAQDADGWLDTGD 420
Query: 529 IGMWIPGGRLKIIDR 543
+G G + + R
Sbjct: 421 LGYLTEEGEVVVCGR 435
|
Length = 545 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 5e-17
Identities = 109/446 (24%), Positives = 154/446 (34%), Gaps = 85/446 (19%)
Query: 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL-YDT 171
TY EA A L G+ +G + L NR E+L V C+ I+VP+
Sbjct: 46 RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105
Query: 172 LGPDAVKYIVNHAS----VQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
GP + N + V+A L + +P V L+ D S+ +
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALL--AALEAADPGDLPLPAVWLL-------DAPASVSV 156
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL----IA 283
G L P + +P D A I YTSGTTG KG H
Sbjct: 157 PAGWSTAPLPPL-----DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRN 211
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALR 343
S +G DV + LPL H N + F+Q A L
Sbjct: 212 SAEDLEIG----ADDVLYTTLPLFHT----NALNA--------FFQ----------ALLA 245
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
+ PR +G AVR G L A + +L +
Sbjct: 246 GATYVLEPRFSA---SGFWPAVRRHGATVTYLLGAMVS-----ILLSQPARE-------- 289
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
RVR P + + FG + +GYG TET+ +I+ + G G
Sbjct: 290 ---SDRAHRVRVALGPGVP--AALHAAFRERFGVDLLDGYGSTETNFVIA-VTHGSQRPG 343
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG--PLIF-KGYYKDEIQTKEV 517
+G E ++VD DQ P GE+ +R P F GY+ +T E
Sbjct: 344 SMGRLAPGFEARVVD-------EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEA 396
Query: 518 IDEDGWFHTGDIGMWIPGGRLKIIDR 543
+ WFHTGD + G + +DR
Sbjct: 397 W-RNLWFHTGDRVVRDADGWFRFVDR 421
|
Length = 542 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 6e-17
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 9/200 (4%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G+ W TY E A V + L+ G+ KG + N + ++ AC+ + VP+
Sbjct: 33 GDRSW-TYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPV 91
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
L + + YI++H+ +A P + + L+ +P LI+ L
Sbjct: 92 NFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLIL--------SLVLGGR 143
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
++ S +P DD+A I YTSGT PKGA+L+H LIA
Sbjct: 144 EAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC 203
Query: 289 TLGTKFYPSDVYISYLPLAH 308
+ D+ + LPL H
Sbjct: 204 IVAGDMSADDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-17
Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 40/254 (15%)
Query: 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIG 142
D + + D + VD Y TY A + + + L+ GI G +
Sbjct: 27 DYWQQTARAMPDKIAV-----VDNHGASY---TYSALDHAASRLANWLLAKGIEPGDRVA 78
Query: 143 LYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS---- 198
E+ I+ AC +SVPL + + +++N + F P
Sbjct: 79 FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFA-PTLFKQTRPV 137
Query: 199 --LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPD 256
+L +++P ++ IV G+D P+ L+ S +++ L D
Sbjct: 138 DLILPLQNQLPQLQQIV---GVDKLAPATSS------LSLSQIIADYEP-LTTAITTHGD 187
Query: 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
++A + +TSGT G PKG +L+H N++AS DV++ PL H
Sbjct: 188 ELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH-------- 239
Query: 317 MTVYSGVAVGFYQG 330
A GF G
Sbjct: 240 -------ATGFLHG 246
|
Length = 547 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 7e-17
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 436 GGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
G + EGYG+TETS + S G L+ G VG P +K++D + +E R
Sbjct: 358 GCTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVID----DDGNELPLGER 412
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
GE+C++GP + KGY++ T E +D +GWF TGDI + P G ++I+DR
Sbjct: 413 GELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDR 462
|
Length = 562 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 8e-17
Identities = 94/409 (22%), Positives = 145/409 (35%), Gaps = 97/409 (23%)
Query: 141 IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL 200
+G+ N PE+ ++ A + + V L T A+ + HA Q V L
Sbjct: 57 VGVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLD 116
Query: 201 SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVAT 260
V + V +++ L+ R PF PDD+
Sbjct: 117 GLDPGVRVIN--------------------VDSPAWADELAAHRDAEPPFRVADPDDLFM 156
Query: 261 ICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDV-YISYLPLAHIYERANQVM 317
+ +TSGT+G PK +H + + AG L +F P DV Y+S +PL H +N VM
Sbjct: 157 LIFTSGTSGDPKAVRCTHRKV--ASAGVMLAQRFGLGPDDVCYVS-MPLFH----SNAVM 209
Query: 318 TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
+G AV G ++ L +A + F R Y YA
Sbjct: 210 ---AGWAVALAAGASIALRRKFSA---SGFLPDVRRYGATYAN----------------- 246
Query: 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM-GSGASPLSPDVLDFLKICFG 436
Y K + + P D +R + G+ +P D+ F + FG
Sbjct: 247 --YVGKPLSYVLATPERP-----------DDADNPLRIVYGNEGAP--GDIARFARR-FG 290
Query: 437 GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI 496
V +G+G TE I++ D G +G + +VD P+ CP E
Sbjct: 291 CVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVD-PDTG-----TECPPAED 340
Query: 497 C----------------VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
GP F+GYY D E + G + +GD+
Sbjct: 341 ADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDL 388
|
Length = 529 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 419 GASPLSPDVL-DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV------GSPNAA 471
GASP+SP L + ++ FG + YG TE +I+ L + D+ G P
Sbjct: 289 GASPMSPVRLAEAIER-FGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347
Query: 472 CEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+ L+D + + + GEICVRGPL+ GY+ +T E DGW HTGD
Sbjct: 348 LRVALLD-------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGD 399
Query: 529 IGMWIPGGRLKIIDR 543
+ G I+DR
Sbjct: 400 VAREDEDGFYYIVDR 414
|
Length = 524 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-16
Identities = 58/209 (27%), Positives = 80/209 (38%), Gaps = 21/209 (10%)
Query: 104 VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163
+D G +TY E + +GL G KG + L N E+ +V A +
Sbjct: 25 IDAATGRA--LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGA 82
Query: 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
+ P + V + + + L S L+ P V L D
Sbjct: 83 VVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLAS-LALEPVVLL--------DSAD 133
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
+LL P K DDVA + Y+SGTTG KG +L+H NLIA
Sbjct: 134 DGS-------AAIDDLLFADEPEP-PVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA 185
Query: 284 SVAG--ATLGTKFYPSDVYISYLPLAHIY 310
+VA A G F DV + LP+ HIY
Sbjct: 186 NVAQLVAGEGPNFDREDVTLCVLPMFHIY 214
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-16
Identities = 54/147 (36%), Positives = 71/147 (48%), Gaps = 22/147 (14%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-----QLDEGD-----NLS 462
+R + +GA L P+V D + FG R+ EGYG TETS + S L +
Sbjct: 900 LRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959
Query: 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVI- 518
G VG P +++VD PE + + P GE I + GP + KGY D +T EVI
Sbjct: 960 GSVGMPLPGVAVRIVD-PE-TF----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013
Query: 519 --DEDGWFHTGDIGMWIPGGRLKIIDR 543
D GW+ TGD G G L I DR
Sbjct: 1014 DIDGIGWYVTGDKGHLDEDGFLTITDR 1040
|
Length = 1146 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 8e-16
Identities = 43/111 (38%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGH---VGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
V YGMTETS + Q D+L VG E+K+VD + PRGE
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-------PDGATVPRGE 398
Query: 496 I---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
I C RG + KGY+ + T E IDEDGW HTGD+ G ++I+ R
Sbjct: 399 IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGR 449
|
Length = 558 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 9e-16
Identities = 72/297 (24%), Positives = 110/297 (37%), Gaps = 70/297 (23%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSD---VYISYLPLAHIYE 311
PD VA +TSG+TG PK + + + A++A P V + ++P H
Sbjct: 219 PDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMG 278
Query: 312 -RANQVMTVYSGVAVGFYQGDNMKLMDDM-----AALR---PTVFCSVPRLYNRIYAGIT 362
AN ++ G G D+ K + M LR PTV+ +VP YA +
Sbjct: 279 GNANFNGLLWGG---GTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPA----GYAMLA 331
Query: 363 SAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422
A+ LR F +R M G +
Sbjct: 332 EAMEKDDALRRSFFK----------------------------------NLRLMAYGGAT 357
Query: 423 LSPDV---LDFLKICFGGR---VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKL 476
LS D+ + L + G GYG TET+ + G +G P E+KL
Sbjct: 358 LSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKL 417
Query: 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
V + + E+ V+GP + GY+KD T DE+G++ GD ++
Sbjct: 418 APVGD-----------KYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFV 463
|
Length = 624 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 90/400 (22%), Positives = 137/400 (34%), Gaps = 96/400 (24%)
Query: 139 SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS 198
I L N +W+I D AC + +P+ ++++N A +
Sbjct: 25 KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFSAQQTQHLLNDAGADLLIS------- 77
Query: 199 LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDV 258
DD + + T L ++ S P
Sbjct: 78 --------------------DDPDAASALHTPFATLGEDLYIALRPS---ANPVELPAGT 114
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIA---SVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315
A I YTSG+TG PKG LS L S+A A + + ++ LPLA + E
Sbjct: 115 AKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAILE---PERHLCLLPLATLLENIAG 171
Query: 316 V-MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
V + G V + L + L P F A ++ S L +
Sbjct: 172 VYAPLLMGATVILVPLAELGLSGS-SGLDPAQFV----------AALSRWQPHSLILVPQ 220
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL---DFL 431
L A A +Q L +RF+ G + +SP +L L
Sbjct: 221 LLMALVAAVEQGPL--------------------PPESLRFVAVGGARVSPSLLQRARAL 260
Query: 432 KICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
+ V EGYG++E + ++S G + G VG P ++ + + D
Sbjct: 261 GL----PVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI---------AND--- 304
Query: 492 PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
GEI VRG L GY + T D W+ TGD+G
Sbjct: 305 --GEILVRGSL-MLGYLGEPPAT------DDWWATGDLGH 335
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 3e-15
Identities = 52/203 (25%), Positives = 83/203 (40%), Gaps = 23/203 (11%)
Query: 108 VGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166
+ E + MTY + ++V + LIY + KG I + N E++++ A + I+V
Sbjct: 22 ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81
Query: 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLP 226
PL L + + + + + +F N LS + +V V+ ++ I +
Sbjct: 82 PLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALS-MQKVSYVQRVISITSL-------- 132
Query: 227 ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
+ + N F ICYTSGTTG PKGAVL+ N+ +
Sbjct: 133 ----------KEIEDRKIDN---FVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 287 GATLGTKFYPSDVYISYLPLAHI 309
T D I LPL HI
Sbjct: 180 NNTFAIDLTMHDRSIVLLPLFHI 202
|
Length = 496 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 3e-15
Identities = 65/284 (22%), Positives = 108/284 (38%), Gaps = 56/284 (19%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DD A + +TSGTTG PK + +H + + P D++ + +
Sbjct: 80 ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWS 139
Query: 315 QVMTVY-SGVAVGFYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
+ + G AV Y G D + ++ + T FC+ P Y
Sbjct: 140 SLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY---------------- 183
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
R+ +Q + S +R + S PL+P+V+D+
Sbjct: 184 ---RML------LQQDLSSYDFS------------------HLRHVVSAGEPLNPEVIDW 216
Query: 431 LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490
+ G + +GYG TET L++ + G +G P + ++D E N +
Sbjct: 217 WRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAIID-DEGNELPPGEE 275
Query: 491 CPRGEICV----RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
G+I V R P +F+GY KD +T+ I W+ TGD
Sbjct: 276 ---GDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRA 315
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 9e-15
Identities = 98/458 (21%), Positives = 168/458 (36%), Gaps = 120/458 (26%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
GE K T+G+ + + GI KG + L R E+ A I++P
Sbjct: 43 GEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPA 102
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQ--TLNSLLSCLSEVPTVRLIVVIG---------- 216
L + Y + A ++ + C+ + + E + L+V++G
Sbjct: 103 THMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDF 162
Query: 217 --GIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGA 274
I++ P TG DD+ + +TSGTTG PK
Sbjct: 163 DKEIENASPDFERPTGN-------------------DATCNDDILLVYFTSGTTGMPK-- 201
Query: 275 VLSHGNLIASVAGATLGTKFY----PSDVYISYLPL-------AHIYERANQVMTVYSGV 323
++ H + G + K++ ++++ +Y Q + +G
Sbjct: 202 MVEHDHTYP--LGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLY---GQWI---AGA 253
Query: 324 AVGFYQGDNM---KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380
AV Y D L++ + T FC+ P +Y R ++E L
Sbjct: 254 AVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL------------IKEDLSKYDL 300
Query: 381 NAKKQAMLSGK--NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
++ + +G+ NP VFN K+K G ++
Sbjct: 301 SSLRYCTTAGEPLNPE------VFNTFKEKTGIKLM------------------------ 330
Query: 439 VTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGE 495
EG+G TET+ I+ + G +G P+ +I ++D + + C GE
Sbjct: 331 --EGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIID-------PDGKSCEVGEEGE 381
Query: 496 ICVR----GPL-IFKGYYKDEIQTKEVIDEDGWFHTGD 528
I +R PL +F GYY+D +T EV DG++HTGD
Sbjct: 382 IVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGD 418
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 66/283 (23%), Positives = 99/283 (34%), Gaps = 67/283 (23%)
Query: 69 VSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS 128
V+RFPD + H R T+ + A +
Sbjct: 28 VARFPDREALVVRH---------------QALR------------YTWRQLADAVDRLAR 60
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
GL+ G+ G +G++ N EWL+ A + I V + ++Y + + V+
Sbjct: 61 GLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRW 120
Query: 189 VFCVP--------QTLNSLLSCLSE----------VPTVRLIVVIGGIDDQIPSLPITTG 230
V C L LL L+E +P +R +V + G
Sbjct: 121 VICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP--------PPG 172
Query: 231 VQILTYSNLLSQG----RSNLQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLI--A 283
L + L ++G R L DD I YTSGTTG PKGA LSH N++
Sbjct: 173 --FLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNG 230
Query: 284 SVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG 326
+LG D +PL H + V+ + VG
Sbjct: 231 YFVAESLG--LTEHDRLCVPVPLYHCF---GMVLANLGCMTVG 268
|
Length = 558 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 94/399 (23%), Positives = 150/399 (37%), Gaps = 93/399 (23%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGGIDDQIPSLPITTG 230
L P+ + YIVNHA + T L+ L+ + P V+ V + LP +
Sbjct: 98 LFPEQIAYIVNHAEDR-YVLFDLTFLPLVDALAPQCPNVKGWVAMTDAA----HLPAGS- 151
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDD--VATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+L Y L+ + + P+ D+ +++CYTSGTTG PKGA+ SH + + GA
Sbjct: 152 TPLLCYETLVGAQDGD---YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGA 208
Query: 289 TLGTKFYPS--DVYISYLPLAHIYERANQVMTVYSGVAVG---FYQG---DNMKLMDDMA 340
L S D + +P+ H+ N YS G G D L + +
Sbjct: 209 ALPDAMGLSARDAVLPVVPMFHV----NAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIE 264
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400
A R T VP ++ G+ + +R GLR R
Sbjct: 265 AERVTFSAGVP----TVWLGLLNHMR-EAGLRFSTLR---------------------RT 298
Query: 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-------IS 453
V +G A P P ++ + +G V +GMTE S L
Sbjct: 299 V--------------IGGSACP--PAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWK 342
Query: 454 QLDEGDNLSGHV----GSPNAACEIKLVDVPEMNYTSEDQPCP-----RGEICVRGPLIF 504
+ + G ++K+V + + P G++ VRGP +
Sbjct: 343 HSQLPLDEQRKLLEKQGRVIYGVDMKIVG-------DDGRELPWDGKAFGDLQVRGPWVI 395
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y++ + ++ DGWF TGD+ G ++I DR
Sbjct: 396 DRYFRGD--ASPLV--DGWFPTGDVATIDADGFMQITDR 430
|
Length = 539 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 98/347 (28%), Positives = 146/347 (42%), Gaps = 59/347 (17%)
Query: 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC--YTSGTT 268
L++VIG SL G + Y L G + PP D+ +I YTSGTT
Sbjct: 150 LLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEF-AWKPPA-DEWQSIALGYTSGTT 207
Query: 269 GTPKGAVLSH-GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGF 327
+PKG VL H G + +++ A L VY+ LP+ H N ++
Sbjct: 208 ASPKGVVLHHRGAYLMALSNA-LIWGMNEGAVYLWTLPMFH----CNGWCFTWT------ 256
Query: 328 YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387
+AAL T C IY+ I + T + N NA K
Sbjct: 257 -----------LAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET 305
Query: 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE 447
+ P P R+V M +GA+P P VL + G RVT YG++E
Sbjct: 306 IL---PLP---RVV------------HVMTAGAAP-PPSVLFAMSE-KGFRVTHTYGLSE 345
Query: 448 T---SCLISQLDEGDNLSGHVGSP-NAACEIKLVDVPEMNY--TSEDQPCPR-----GEI 496
T S + + E D+L + NA ++ + + ++ T +P P GEI
Sbjct: 346 TYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEI 405
Query: 497 CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+RG ++ KGY K+ +E +GWFH+GD+G+ P G ++I DR
Sbjct: 406 VMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDR 451
|
Length = 567 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 3e-14
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 18/236 (7%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T +D+F AV D L T R G + +Y E + GL G+ +G
Sbjct: 23 TINDHFDAAVANCPDKPAL-TAYRDGH--GAVRRFSYRELDCRVDRIAVGLARLGVGRGD 79
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS- 198
+ NR E+ + AC+ + PL + +++NHA + VF VP
Sbjct: 80 VVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSK-VFVVPSVFRGF 138
Query: 199 -----LLSCLSEVPTVRLIVVIGGI-DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
S++P +R +VVI G DD + +T + + G
Sbjct: 139 DHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAAAILAG-------PR 191
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
P PDDV + YTSGTTG PKG + + L +++ + DV + P+AH
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 9e-14
Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 46/226 (20%)
Query: 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIG 142
R + D + L V D +W TY E + GL+ GI KG +G
Sbjct: 20 QLLDRTAARYPDREAL---VYRDQ---GLRW-TYREFNEEVDALAKGLLALGIEKGDRVG 72
Query: 143 LYFVNRPEWLIVDHACSAYSFISV---PLYDTLGPDAVKYIVNHASVQAVFCVP------ 193
++ N PEW++ A + I V P Y ++Y +N + +A+
Sbjct: 73 IWAPNVPEWVLTQFATAKIGAILVTINPAYRL---SELEYALNQSGCKALIAADGFKDSD 129
Query: 194 --QTLNSLLSCL----------SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLS 241
L L L + +P +R ++ +G D++ P + L + LL+
Sbjct: 130 YVAMLYELAPELATCEPGQLQSARLPELRRVIFLG--DEKHPGM--------LNFDELLA 179
Query: 242 QGRSN----LQPFSPP-KPDDVATICYTSGTTGTPKGAVLSHGNLI 282
GR+ L PDD I YTSGTTG PKGA L+H N++
Sbjct: 180 LGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
PP PDD+A + YTSG+TG PKG +++HGNL+A++ P DV +S+LPL H
Sbjct: 141 RPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 91/421 (21%), Positives = 155/421 (36%), Gaps = 67/421 (15%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++YGE +G+ L G+ + + L ++ ++ I + V L L
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D Y++ + + VF + L + + L + P + VV+G + L
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQL-------- 142
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV---AGATL 290
+ LL+ +P + + DD A Y+SG+TG PKG V +H N + A TL
Sbjct: 143 ---AELLATESEQFKP-AATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL 198
Query: 291 GTKFYPSDVYISYLPLAHIYERANQV---MTVYSGVAVGFYQGDNMKLMDDMAALRPTVF 347
G + DV S L Y N + M+V + + + + D + +PT+F
Sbjct: 199 GIR--EDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIF 256
Query: 348 CSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407
VP LY AML+ N +
Sbjct: 257 YGVPTLY------------------------------AAMLADPN------------LPA 274
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467
+ R+R S L +V + FG + +G G TE + GD G G
Sbjct: 275 EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGK 334
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
P ++LV + +P GE+ + GP Y+ + +T++ + W +G
Sbjct: 335 PVPGYRLRLVG-DGGQDVAAGEP---GELLISGPSSATMYWNNRAKTRDTF-QGEWTRSG 389
Query: 528 D 528
D
Sbjct: 390 D 390
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-13
Identities = 65/303 (21%), Positives = 118/303 (38%), Gaps = 65/303 (21%)
Query: 43 YSVVLPEKLDTGKW-NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTR 101
S+ LPE T + N+ S+R R+PD I + G
Sbjct: 3 KSLTLPE---TSLFHNLEVSAR-------RYPDKTAI-----------------VFYGRA 35
Query: 102 VRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH--GISKGSCIGLYFVNRPEWLIVDHACS 159
+ +Y E E +G + G+ KG + LY N P+++I +A
Sbjct: 36 I------------SYREL-LEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82
Query: 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVV-IGGI 218
+ + VP+ + + + V + + + + + + +IV
Sbjct: 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDY 142
Query: 219 DDQIPSLPITTGVQ------------ILTYSNLLSQGRSNLQPFSPP---KPDDVATICY 263
P + + ++ ++ + L+ G L P PP PDD+A + Y
Sbjct: 143 LPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAG---LAP--PPHTAGPDDLAVLPY 197
Query: 264 TSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT-VYSG 322
TSGTTG PKG + +H ++A+ G+ L + P V ++ LPL H+ + + +Y+G
Sbjct: 198 TSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAG 257
Query: 323 VAV 325
V
Sbjct: 258 ATV 260
|
Length = 546 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 104/460 (22%), Positives = 165/460 (35%), Gaps = 101/460 (21%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA----------- 157
G +W +Y E + +GL GI +G + N E+ IV A
Sbjct: 45 GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103
Query: 158 --------CSAY-SFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT 208
+AY S I LY + A ++F L S L PT
Sbjct: 104 LFSHRKSELTAYASQIEPALY--IIDRA----------HSLFDYDDFARQLQSKL---PT 148
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
+R I+V G + L + + + F P K D+VA + G+T
Sbjct: 149 LRNIIVAGQTGEAELFLWLES-----PAEPV---------KFPPTKSDEVAFFQLSGGST 194
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFY 328
GTPK +H + SV + Y+ LP AH N ++ + V FY
Sbjct: 195 GTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAH-----NYPLSSPGALGV-FY 248
Query: 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388
G + L D + F L R +T+ V + L AA +K +A L
Sbjct: 249 AGGCVVLAPDPSPT--DCF----PLIERHKVTVTALVPPAVAL---WMQAA--SKSRADL 297
Query: 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET 448
S ++ + G + S + FG ++ + +GM E
Sbjct: 298 SS----------------------LKLLQVGGAKFSAAAARRVPAVFGCQLQQVFGMAEG 335
Query: 449 SCLISQLDEGDNLSGHV-GSPNAAC-EIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLI 503
++LD+ + G P + E+++VD P GE + RGP
Sbjct: 336 LVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-------DHGNPVAPGETGMLLTRGPYT 388
Query: 504 FKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
F+GYYK D +G+++TGD+ P G + ++ R
Sbjct: 389 FRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGR 428
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 78/298 (26%), Positives = 116/298 (38%), Gaps = 56/298 (18%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS--DVYISYLPLAHIYER 312
DD A + YTSGTTG PKGA+ H L+ + G L + P DV+ + A I
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRPGDVFWTPADWAWIGGL 146
Query: 313 ANQVM-TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
+ ++ +Y GV V Y+ M+ D A + R Y G+T+A L
Sbjct: 147 LDVLLPALYFGVPVVAYR---MQRFDPERAFA------LMRRY-----GVTNAFLPPTAL 192
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431
+ G +D R+R + SG L ++L++
Sbjct: 193 K------------MMRRVGS-ERARYDL------------RLRAVASGGESLGEELLEWA 227
Query: 432 KICFGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490
+ G V E YG TE + ++ G G +G P E+ +VD +P
Sbjct: 228 RDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGKPVPGHEVAVVD-------DAGRP 280
Query: 491 CP---RGEICVR--GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
P GEI V+ P++F GY+ + T W TGD+G G L R
Sbjct: 281 VPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF-AGDWLLTGDLGRRDADGYLWFKGR 337
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 5e-13
Identities = 71/361 (19%), Positives = 146/361 (40%), Gaps = 24/361 (6%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFV 146
R+V ++ LG GE +W+TYG E+GSGL+ G+ G IG+
Sbjct: 435 RSVTRHSTFRCLGQT----SESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE 490
Query: 147 NRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-E 205
+I++ AC+ Y F ++PL ++ +++ ++ VF ++ ++L+C S +
Sbjct: 491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSRK 548
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265
+ TV + D+ ++ + ++ Y + +GR P Y
Sbjct: 549 LETV--VYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPL-KEHVTTDTVFTYVV 605
Query: 266 GTTGTPKGAVLS-----HGNLIASVAGATLGTKFYPS----DVYISYLPLAHIYERANQV 316
T + G L+ H +++ ++ + T PS + + + P A ++ R +
Sbjct: 606 DNTTSASGDGLAVVRVTHADVLRDIS-TLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVL 664
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376
G AV D L +PT+ + P L++ ++ A + LF
Sbjct: 665 GLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLF 722
Query: 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR--FMGSGASPLSPDVLDFLKIC 434
A+ + + + + S + + F ++ LGG V + S +L+ + +C
Sbjct: 723 ERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLEHISVC 782
Query: 435 F 435
+
Sbjct: 783 Y 783
|
Length = 1452 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-13
Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
L GR L F PDD A I +TSG+ GTPKG VLSH NL+A+ A F P D
Sbjct: 777 LLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDK 836
Query: 300 YISYLPLAHIYE-RANQVMTVYSGVAVGFY 328
+ LP+ H + V+ + SGV V Y
Sbjct: 837 VFNALPVFHSFGLTGGLVLPLLSGVKVFLY 866
|
Length = 1140 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 8e-13
Identities = 64/242 (26%), Positives = 99/242 (40%), Gaps = 30/242 (12%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T +D+ V + D K T VR+ G + TY E V GL G+ +G
Sbjct: 25 TINDDLDACVASCPD-KTAVTAVRLGT--GAPRRFTYRELAALVDRVAVGLARLGVGRGD 81
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-- 197
+ N E+ ++ ACS + PL + +++ HA V VP+T
Sbjct: 82 VVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAE-SKVLVVPKTFRGF 140
Query: 198 ---SLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP- 252
++ L E+P +R +VV+GG ++ LL +P +P
Sbjct: 141 DHAAMARRLRPELPALRHVVVVGGDGAD-------------SFEALLITPAWEQEPDAPA 187
Query: 253 ------PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306
P PDDV + YTSGTTG PKG + + L+A++ DV + P+
Sbjct: 188 ILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPM 247
Query: 307 AH 308
AH
Sbjct: 248 AH 249
|
Length = 547 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNA 470
VR+ +G +P P+ L I G +G+GMTETS + L E D G +G P
Sbjct: 266 VRWFYNGGAP-CPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVL 324
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
C+ +L+D ++ + GE+ +RGP + K Y+ T+E I +DGW TGD+
Sbjct: 325 FCDYELID----ENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLA 379
Query: 531 MWIPGGRLKIIDR 543
G + I+ R
Sbjct: 380 RVDEDGFVYIVGR 392
|
Length = 496 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 73/321 (22%), Positives = 111/321 (34%), Gaps = 103/321 (32%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHG---NLIASVAGATLGTKFYPSDVY---------IS 302
PDD+A + YTSG+TG PKG +SH N + S+A G SD IS
Sbjct: 92 PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMA-RRPGLG--ASDRLLAVTTISFDIS 148
Query: 303 ----YLPL---AHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYN 355
LPL A + +A D +L +A R T+ + P +
Sbjct: 149 VLELLLPLLSGATVV------------IASAETVRDPERLARLIADERITIMQATPATWR 196
Query: 356 RIYAGITSAVRTSGGLRERLFNAAYNAKKQ-AMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414
L A + ++ L G
Sbjct: 197 ------------------MLLAAGWRGRESLTALCG------------------------ 214
Query: 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAAC 472
L D+ + L G + YG TET+ +++ D +G P A
Sbjct: 215 -----GEALPRDLAERLLST-GAELWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANT 267
Query: 473 EIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVI-----DEDG-- 522
++ ++D + QP P GE+ + G + +GY T E D+ G
Sbjct: 268 QVYVLD-------EDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDPFDDPGGR 320
Query: 523 WFHTGDIGMWIPGGRLKIIDR 543
+ TGD+ W P GRL+ + R
Sbjct: 321 LYRTGDLVRWRPDGRLEYLGR 341
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 9/189 (4%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
GI KG + L+ N PE++ + I VP+ L + +I+ ++ +
Sbjct: 58 GIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSA 117
Query: 194 QTLNSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
Q E T +R I + +LP GV +++ L +Q + L P
Sbjct: 118 QFYPMYRQIQQEDATPLRHICLTR------VALPADDGV--SSFTQLKAQQPATLCYAPP 169
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
DD A I +TSGTT PKG V++H NL + + DVY++ +P HI +
Sbjct: 170 LSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQ 229
Query: 313 ANQVMTVYS 321
M +S
Sbjct: 230 CTAAMAAFS 238
|
Length = 517 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 77/425 (18%), Positives = 137/425 (32%), Gaps = 82/425 (19%)
Query: 128 SGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQ 187
+ L G+ +G + ++ N EW+++ AC+ + + V +I+ +
Sbjct: 50 AWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRAR 109
Query: 188 AVFCVPQ----TLNSLLSCL--SEVPTVRLIVVIGGIDDQIPS-LPITTGVQILTYSNLL 240
+ P ++L+ + +P +R I V+ D P+ P
Sbjct: 110 WLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAP 169
Query: 241 SQGRSNLQPFSPPKPDDVATICYT-SGTTGTPK------GAVLSHGNLIASVAGATLGTK 293
D + +T SGTT PK +L H IA G
Sbjct: 170 PAAAG-----ERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYG------ 218
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRL 353
+ P V ++ LP ++ +S + G + VF +
Sbjct: 219 YDPGAVLLAALPFCGVFG--------FSTLLGALAGGAPLVCEP--------VFDAARTA 262
Query: 354 YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRV 413
+T LR R+ + A P
Sbjct: 263 RALRRHRVTHTFGNDEMLR-RILDTAGERA---------DFP----------------SA 296
Query: 414 RFMGSGA-SPLSPDVLDFLKICFGGRVTEG-YGMTETSCLISQLDEGDNLS------GHV 465
R G + +P ++ G G YG +E L++ D +S G
Sbjct: 297 RLFGFASFAPALGELAALA--RARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRP 354
Query: 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
SP A ++ D + + + GEI +R P + +GY + T + +DG+F
Sbjct: 355 ASPEA--RVRARDPQDGALLPDGES---GEIEIRAPSLMRGYLDNPDATARALTDDGYFR 409
Query: 526 TGDIG 530
TGD+G
Sbjct: 410 TGDLG 414
|
Length = 540 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 4e-12
Identities = 98/474 (20%), Positives = 150/474 (31%), Gaps = 151/474 (31%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
+TY E + L G+ G + L PE ++ + A +AY VPL
Sbjct: 13 LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAY----VPLD 68
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
+ + +++ A LL+ S P R + I ++
Sbjct: 69 PAYPAERLAFML--EDSGARV--------LLTDESLAPLARADQLPLVILEEEL------ 112
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
P DD+A + YTSG+TG PKG + H V
Sbjct: 113 ------------DAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPH----RGVVRLV 156
Query: 290 LGTKFY---PSDVYISYLPLA------------------HIYERANQVMTVYSGVAVGFY 328
T + P D ++ PL+ + ++
Sbjct: 157 RNTNYIALDPDDRFLQLSPLSFDASTFEIWGALLNGGRLVLIDKE--------------- 201
Query: 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN--AAYNAKKQA 386
+ D L RL G+T T+ LFN +
Sbjct: 202 ------TLLDPDRLA--------RLIAE--QGVTVLWLTAA-----LFNQLVDEDP---E 237
Query: 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD-VLDFLKICFGGRVTEGYGM 445
L+G +R + G LSP V L C G R+ GYG
Sbjct: 238 ALAG----------------------LRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGP 275
Query: 446 TE----TSC-LISQLDEGDNLSGHV--GSPNAACEIKLVDVPEMNYTSEDQPCP---RGE 495
TE ++C +I++LDE + G P + ++D E QP P GE
Sbjct: 276 TENTTFSTCHVITRLDEAA---DSIPIGRPIPNTTVYILD-------EEGQPVPIGVPGE 325
Query: 496 ICVRGPLIFKGYYKDEIQTKEVIDED----G--WFHTGDIGMWIPGGRLKIIDR 543
+ V G + GY T E D G + TGD+ W P G ++ + R
Sbjct: 326 LYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGR 379
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 68.2 bits (166), Expect = 4e-12
Identities = 63/323 (19%), Positives = 101/323 (31%), Gaps = 60/323 (18%)
Query: 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH--GNLIASVAGATLGTK 293
+ + YT+GTTG PKG V SH L + A GT
Sbjct: 133 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA 192
Query: 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQGDNMKLM-DDMAALRPTVFCSVP 351
DV + +P+ H+ T+ V + + + T VP
Sbjct: 193 LSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVP 252
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
++ + + +L
Sbjct: 253 TVWLAL----------------------ADYL-------------------ESTGHRLKT 271
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE-----TSCL------ISQLDEGDN 460
R + G++ P L G V +GYG+TE +E
Sbjct: 272 LRRLVVGGSAA--PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 329
Query: 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE 520
L G P +++ D + + E+ ++GP I GYY +E T+ +
Sbjct: 330 LKAKTGLPIPLVRLRVADEEGRPVPKDGKALG--EVQLKGPWITGGYYGNEEATRSALTP 387
Query: 521 DGWFHTGDIGMWIPGGRLKIIDR 543
DG+F TGDI +W G ++I DR
Sbjct: 388 DGFFRTGDIAVWDEEGYVEIKDR 410
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 5e-12
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 27/106 (25%)
Query: 442 GYGMTE---TSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICV 498
GYG+TE T C D L+G VGSP E+KLVD GEI +
Sbjct: 270 GYGLTEMASTVCA----KRADGLAG-VGSPLPGREVKLVD---------------GEIWL 309
Query: 499 RGPLIFKGYYKD-EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
RG + GY++ ++ +++++GWF T D G W G L I+ R
Sbjct: 310 RGASLALGYWRQGQLVP--LVNDEGWFATRDRGEWQ-NGELTILGR 352
|
Length = 458 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 44/117 (37%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
Query: 436 GGRVTEG-YGMTETSCLIS-----QLDEGDNLSG--HVGSPNAACEIKLVDVPEMNYTSE 487
G + E +GMTET + Q D+ D LS VG P E K+ D T E
Sbjct: 352 GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFE----TGE 407
Query: 488 DQPC-PRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
P GEI VR P + KGY+ T E + DGW HTGDIG G L + R
Sbjct: 408 LLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGR 463
|
Length = 567 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 79/297 (26%), Positives = 107/297 (36%), Gaps = 62/297 (20%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASV-AGATLGTKFYPSDVYISYLPLAHIYER 312
DDVA I +TSGTTG PKG + H +++A A + P DV+I PLA +
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGL 204
Query: 313 ANQVM-TVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370
V+ + G AV Q L+ + R T+ + P Y
Sbjct: 205 GGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAYR--------------- 249
Query: 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430
AML K+K +R S L V
Sbjct: 250 ---------------AML--------------IKVKAFDISSLRKCVSAGETLPAKVWQD 280
Query: 431 LKICFGGRVTEGYGMTET-SCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQ 489
G ++ +G G TE IS +E + G G P E ++VD +
Sbjct: 281 WYERTGLKIIDGIGATEMLHIFISANEE-NAKPGATGKPVPGYEARIVD-------DQGN 332
Query: 490 PCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
PRGE + VRGP + Y DE Q + V DGW TGDI G + R
Sbjct: 333 EVPRGEAGRLAVRGPTGCR-YLDDERQQEYV--RDGWNVTGDIFRQDEDGYFHYVAR 386
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 3e-11
Identities = 101/449 (22%), Positives = 161/449 (35%), Gaps = 90/449 (20%)
Query: 126 VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHAS 185
+ + LI I+K + + N P + A + P+ L ++ I+ HA
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 186 VQAVFC------VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+ +F + + + LLS + ++ I ID P + L Y L
Sbjct: 112 PKILFVDRSFEPLAREVLHLLSSEDSNLNLP-VIFIHEID-----FPKRPSSEELDYECL 165
Query: 240 LSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY 295
+ +G + F D ++ YTSGTT PKG V+SH S A +G +
Sbjct: 166 IQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMG 225
Query: 296 PSDVYISYLPLAH---------IYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTV 346
VY+ LP+ H R + + A Y+ M + M
Sbjct: 226 TCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHM------- 278
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
C VP ++N + G N+ + SG
Sbjct: 279 -CCVPTVFNILLKG--------------------NSLDLSPRSGP--------------- 302
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI---SQLDEGDNLSG 463
V + G+ P P L G +V YG+TE + + DE + L
Sbjct: 303 ------VHVLTGGSPP--PAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPE 354
Query: 464 H----VGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQT 514
+ + + + L DV N + PR GEI ++G I KGY K+ T
Sbjct: 355 NQQMELKARQGVSILGLADVDVKN-KETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKAT 413
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
E + GW +TGD+G+ P G ++I DR
Sbjct: 414 SEAF-KHGWLNTGDVGVIHPDGHVEIKDR 441
|
Length = 579 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 64/296 (21%), Positives = 107/296 (36%), Gaps = 51/296 (17%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DD+ YTSGTTG PKG + L A A DV+ +
Sbjct: 87 DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWN------------ 134
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
G A G Y + +A TVF + G T+ R
Sbjct: 135 ---IADPGWAYGLY----YAITGPLAMGITTVF---------LEGGFTAENTYDVLERLG 178
Query: 375 LFNAAYNAKK-QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKI 433
+ N A + + +++ + + ++R S PL+P+V+ + +
Sbjct: 179 VTNFAGSPTAYRMLMAAGADAAARIK-----------LKLRVASSAGEPLNPEVVRWFQA 227
Query: 434 CFGGRVTEGYGMTETSCLISQL--DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPC 491
G + + YG TET + + +G +G P I ++D + ++ +P
Sbjct: 228 NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLD-DDGQPLADGEP- 285
Query: 492 PRGEICVR----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
G++ + L F GY+ D +T E+I W+ TGD+ G I R
Sbjct: 286 --GQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLVERDEDGYFWFIGR 338
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 6e-11
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 11/189 (5%)
Query: 114 MTYGEAGTARTE-VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTL 172
+TY E R + LI G+ G +G+Y NR E++ + V +
Sbjct: 29 LTYAEL-EERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRY 87
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
D ++Y+++ + A+ + + L +P +R +VV+ LP V
Sbjct: 88 VEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVED-GSGNDLLP--GAV- 143
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLG 291
Y + L+ G S + F PDD+ + YT GTTG PKG + ++ + G
Sbjct: 144 --DYEDALAAG-SPERDFGERSPDDLYLL-YTGGTTGMPKGVMWRQEDIFRVLLGGRDFA 199
Query: 292 TKFYPSDVY 300
T D
Sbjct: 200 TGEPIEDEE 208
|
Length = 533 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 39/108 (36%), Positives = 51/108 (47%), Gaps = 24/108 (22%)
Query: 435 FGGRVTEGYGMTETSC-LISQLDEGDNLSGH-----VGSPNAACEIKLVDVPEMNYTSED 488
FG R+ YGMTET +I GD +G P E ++ D +
Sbjct: 311 FGVRLLTSYGMTETIVGII-----GDRPGDKRRWPSIGRPGFCYEAEIRDD-------HN 358
Query: 489 QPCPR---GEICVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
+P P GEIC++G IFK YY D T +V++ DGW HTGD G
Sbjct: 359 RPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTG 406
|
Length = 517 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 172 LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
L P+ + +I+NHA + V + L ++P+V VV+ +P TT
Sbjct: 98 LFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAA----HMPQTTLK 153
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-----LIASVA 286
+ Y +++ + + + + A +CYTSGTTG PKG + SH + L+A+
Sbjct: 154 NAVAYEEWIAEADGDFAWKTFDE-NTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNG 212
Query: 287 GATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG 326
A LGT +D + +PL H AN +S ++G
Sbjct: 213 DA-LGTS--AADTMLPVVPLFH----ANSWGIAFSAPSMG 245
|
Length = 542 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 110/450 (24%), Positives = 168/450 (37%), Gaps = 120/450 (26%)
Query: 143 LYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSC 202
L F + P+++ C I+VP Y P++ + LLS
Sbjct: 69 LLFPSGPDYVAAFFGCLYAGVIAVPAYP---PESAR--------------RHHQERLLSI 111
Query: 203 LSEVPTVRLIVVIGGIDD---QIPSLPITTGVQILTYSNLLSQGRSNLQPFSPP-KPDDV 258
+++ RL++ + + D Q+ L ++L L Q P +PDD+
Sbjct: 112 IADAEP-RLLLTVADLRDSLLQMEELAAANAPELLCVDTLDPALAEAWQ--EPALQPDDI 168
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIAS--VAGATLGTKFYPSDVYISYLPLAHIYERANQV 316
A + YTSG+T PKG +SHGNL+A+ + G P DV +S+LPL H
Sbjct: 169 AFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHD------- 221
Query: 317 MTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVP-RLYNRI--YAGITSAVRTSGG--- 370
M + G+ + G LM P F P R I Y G SGG
Sbjct: 222 MGLIGGLLQPIFSGVPCVLMS------PAYFLERPLRWLEAISEYGGT-----ISGGPDF 270
Query: 371 ----LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426
ER+ +A L + S RV + SG+ P+ D
Sbjct: 271 AYRLCSERVSESA--------LERLDLS---------------RWRVAY--SGSEPIRQD 305
Query: 427 VLDFLKICFGG------RVTEGYGMTETSCLIS-----------QLDEGDNLSGHV---- 465
L+ F YG+ E + +S +LD + L+ +
Sbjct: 306 SLERFAEKFAACGFDPDSFFASYGLAEATLFVSGGRRGQGIPALELD-AEALARNRAEPG 364
Query: 466 -GSPNAAC-------EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD-EIQTKE 516
GS +C + +VD + +++ GEI GP I GY+++ E K
Sbjct: 365 TGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNRV---GEIWASGPSIAHGYWRNPEASAKT 421
Query: 517 VIDEDG--WFHTGDIGMWIPG-----GRLK 539
++ DG W TGD+G G GRLK
Sbjct: 422 FVEHDGRTWLRTGDLGFLRDGELFVTGRLK 451
|
Length = 4334 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 441 EGYGMTETSCLISQLDEGDNLSGHV---GSPNAACEIKLVDVPEMNYTSEDQPCPRGEIC 497
YG TE S + ++ D LS + G A EIK+VD P GE
Sbjct: 331 SVYGSTE-SSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD----EARKTLPPGCEGEEA 385
Query: 498 VRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
RGP +F GY + T +DE+GW+++GD+ G +KI R
Sbjct: 386 SRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGR 431
|
Length = 547 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 85/329 (25%), Positives = 124/329 (37%), Gaps = 86/329 (26%)
Query: 229 TGVQIL-----TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
GV++L Y+ L+ L P D + +TSGTTG PK SHG L
Sbjct: 119 PGVRVLDVDTPAYAELV-AAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLA- 176
Query: 284 SVAGATLGTKF--YPSDV-YISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMA 340
AG L +F DV Y+S +PL H +N VM +G A G + L +
Sbjct: 177 -FAGRALTERFGLTRDDVCYVS-MPLFH----SNAVM---AGWAPAVASGAAVALPAKFS 227
Query: 341 ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA--MLSGKNPSPMWD 398
A F R Y Y FN Y K A + + + P +
Sbjct: 228 ASG---FLDDVRRYGATY-----------------FN--YVGKPLAYILATPERPDDADN 265
Query: 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG 458
L RV F G+ ASP D+ +F + FG +V +GYG +E + ++ + E
Sbjct: 266 PL-----------RVAF-GNEASP--RDIAEFSRR-FGCQVEDGYGSSEGAVIVVR--EP 308
Query: 459 DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR----------------GEICVR-GP 501
G +G A + + + PE C GE+ G
Sbjct: 309 GTPPGSIGRG--APGVAIYN-PETL-----TECAVARFDAHGALLNADEAIGELVNTAGA 360
Query: 502 LIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
F+GYY + T E + G + +GD+
Sbjct: 361 GFFEGYYNNPEATAERM-RHGMYWSGDLA 388
|
Length = 540 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 82/298 (27%), Positives = 113/298 (37%), Gaps = 67/298 (22%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY---PSDVYISYLPLAHIYE 311
P+DVA I +TSGT PKG L+H NL+A+ A L KF+ DV +S+LP H Y
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLAN-QRACL--KFFSPKEDDVMMSFLPPFHAY- 237
Query: 312 RANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
GF N + + + P VF P +I I A T G
Sbjct: 238 --------------GF----NSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGS 279
Query: 372 RERLFNAAYN-AKKQAMLSGKNPSPMWDRLVF---NKIKDKLGGRVRFMGSGASPLSPDV 427
F+ AKKQ R V + KD L A P +
Sbjct: 280 TPVFFDYILKTAKKQ------ESCLPSLRFVVIGGDAFKDSL-------YQEALKTFPHI 326
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTS 486
++ +GYG TE S +I+ VG P ++ +V S
Sbjct: 327 ----------QLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIV--------S 368
Query: 487 EDQ--PCPRGE---ICVRGPLIFKGYY-KDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
E+ P GE + RG +F GY +D Q + + W+ TGD+G G L
Sbjct: 369 EETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGEL 426
|
Length = 539 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 12/90 (13%)
Query: 232 QILTYSNLLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG--- 287
Q + + L QGR +L+P P DD+A + YT GTTG KGA+L+HGNL+A++
Sbjct: 183 QAVPFKQALRQGRGLSLKPV-PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRA 241
Query: 288 --ATLGTKFYP-----SDVYISYLPLAHIY 310
+ LG P +V I+ LPL HIY
Sbjct: 242 CLSQLGPDGQPLMKEGQEVMIAPLPLYHIY 271
|
Length = 562 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 73/316 (23%), Positives = 112/316 (35%), Gaps = 72/316 (22%)
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSD 298
L + +P P I TSGTTGTPKGA S G A L T + +
Sbjct: 182 LIAAHAGQRP--EPTGRKGRVILLTSGTTGTPKGARRS-GPGGIGTLKAILDRTPWRAEE 238
Query: 299 VYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCSVPRLY 354
+ P+ H + + V+ + F + L+D R T VP ++
Sbjct: 239 PTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDLID---RHRATGLAVVPVMF 295
Query: 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR-V 413
+RI + +++++ GR +
Sbjct: 296 DRIMD-----------------------------------------LPAEVRNRYSGRSL 314
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH---VGSPNA 470
RF + S + PDV+ FG + Y TE +I+ D L G P
Sbjct: 315 RFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAG-MIATATPAD-LRAAPDTAGRPAE 372
Query: 471 ACEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
EI+++D + + P GE I VR F GY TK+ DG+ +G
Sbjct: 373 GTEIRILD-------QDFREVPTGEVGTIFVRNDTQFDGYTSG--STKDFH--DGFMASG 421
Query: 528 DIGMWIPGGRLKIIDR 543
D+G GRL ++ R
Sbjct: 422 DVGYLDENGRLFVVGR 437
|
Length = 537 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 419 GASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAACEIK 475
GAS + +VL L+ G R YG TE + L + L ++L G G P E +
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETR 353
Query: 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
+VD + N + + GEI R P + GY+ D +T E GWFH+GD+G+
Sbjct: 354 VVD-DDGNDVAPGEV---GEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE 408
Query: 536 GRLKIIDR 543
G + ++DR
Sbjct: 409 GYITVVDR 416
|
Length = 523 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYG+ + G+ G + L +NRPE L+ A L+
Sbjct: 38 LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97
Query: 174 PDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
D Y++ A + + P + L+ L+ VP+++ ++ +G P+ GV
Sbjct: 98 LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLG---------PVPDGVD 148
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292
+L + G + L + P D+A + YT GTTG PKG + +H + IA++A L
Sbjct: 149 LLAAAA--KFGPAPLVAAA--LPPDIAGLAYTGGTTGKPKGVMGTHRS-IATMAQIQLAE 203
Query: 293 KFYPSDVYISYL---PLAH 308
+P+D +L PL+H
Sbjct: 204 WEWPAD--PRFLMCTPLSH 220
|
Length = 524 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSC--LISQLDEGDNLSGHVGSPNAA 471
F+ +GA P+ +++ + G ++ +GMTE L D + S G P
Sbjct: 316 TFLCAGA-PIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPG 374
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ++ P P G+I VRG F GY K D DGWF TGD
Sbjct: 375 VEVRVVD-------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGT--DADGWFDTGD 425
Query: 529 IGMWIPGGRLKIIDR 543
+ G ++I R
Sbjct: 426 LARIDADGYIRISGR 440
|
Length = 547 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452
P +W + + + R+R S PL+P+V++ +K +G + +GYG TET+ +I
Sbjct: 182 PPTVWRMFIQQDL-AQYDVRLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMI 240
Query: 453 SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVR---GPL-IFKG 506
G +G P + L+D E + P GEI + P+ + G
Sbjct: 241 GNSPGQKVKPGSMGRPLPGYRVVLLD-------DEGKEIPVTEGEIALDLGDRPIGLMLG 293
Query: 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
Y D +T G++ TGD G L + R
Sbjct: 294 YMGDPEKTAAAFR-GGYYRTGDKAYRDEDGYLWFVGR 329
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 4e-09
Identities = 50/183 (27%), Positives = 66/183 (36%), Gaps = 57/183 (31%)
Query: 411 GRVRFMGSGASPLSPDVLD-FLKICFG------GRVTEGYGMTETSCLIS---------- 453
R +GA P+ D L+ F + F YG+ E + +S
Sbjct: 270 SSWRVAFNGAEPVRADTLERFAE-RFAPAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVV 328
Query: 454 -QLDEGDNLSGHV----------------GSPNAACEIKLVDVPEMNYTSEDQPCPR--- 493
++D G G P E+++VD PE +P P
Sbjct: 329 LRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHEVRIVD-PETR-----RPLPDGEV 382
Query: 494 GEICVRGPLIFKGYYKDEIQTKEV------IDEDGWFHTGDIGMWIPG-----GRLK--I 540
GEI VRGP + GY+ T E DE GW TGD+G G GRLK I
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLHDGELYVTGRLKDLI 442
Query: 541 IDR 543
I R
Sbjct: 443 IIR 445
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 7e-09
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472
+R++ +GA + + FG R+ EGYG+TET+ +I+ N +G VG
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGI 968
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
E +L VP ++ G + VRGP + GY + E DGW+ TGDI
Sbjct: 969 EYRLEPVPGID--------EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDI 1017
|
Length = 1140 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 16/224 (7%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP 174
TY E + L G+ G + ++ N P++ IV + VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 175 DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQIPSLPITTGVQ 232
+ Y +N A + + + Q + +E +R ++V D P+LP+ ++
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETS-LRHVIVTSLADVLPAEPTLPLPDSLR 178
Query: 233 ILTYS-----NLLS--QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--- 282
+ +LL + + P PP D +A + YT GTTG PKG + +++
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238
Query: 283 ASVAGATLGTKFYPSDVYISYLPLAHIY-ERANQVMTVYSGVAV 325
A+ + V++S+LP I E + ++SG +
Sbjct: 239 AAAYAVAVVGG--EDSVFLSFLPEFWIAGENFGLLFPLFSGATL 280
|
Length = 567 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 250 FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
KPDD ATI ++SG+ G PKG +LSH N+++++ + DV +S LP H
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834
|
Length = 1146 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 45/132 (34%), Positives = 61/132 (46%), Gaps = 28/132 (21%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA- 471
+R++G G + + V + LK G EGYG+TET ++Q H P+
Sbjct: 307 LRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTET---MAQT--------HSNPPDRPK 355
Query: 472 --C-EIKLVDV------PEMNYTSEDQPCPR-GEICVRGPLIFKGYYKDEIQTKEV-IDE 520
C I V PE T E+ P GEI V GP +FKGY+ T E I+
Sbjct: 356 LQCLGIPTFGVDARVIDPE---TLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEI 412
Query: 521 DG--WFHTGDIG 530
DG +F TGD+G
Sbjct: 413 DGKRFFRTGDLG 424
|
Length = 546 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 26/125 (20%)
Query: 435 FGGRVTEGYGMTETSCL--ISQL-DEGDNLSGHV--------GSPNAACEIKLVDVPEMN 483
G V +GMTE S L ++ L L G G P E+K+ D
Sbjct: 317 MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD----- 371
Query: 484 YTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRL 538
+ P G + VRGP + YY+ + E++D+DG+F TGD+ G +
Sbjct: 372 --DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYM 426
Query: 539 KIIDR 543
+I DR
Sbjct: 427 RITDR 431
|
Length = 542 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308
+P+D A I +TSG+ G PKG V SH +L+A+V F P+D ++S LPL H
Sbjct: 361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFH 417
|
Length = 718 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 68/314 (21%), Positives = 105/314 (33%), Gaps = 80/314 (25%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASV--AGATLGTKFYPSDVYISYLPL 306
P +P+ A + YTSGTTG PKGAV+ + V G + +V + +PL
Sbjct: 145 EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAGLRHGRHNVVLGLMPL 204
Query: 307 AHIYERANQVMTVYSGVAVG-------------FYQGDNMKLMDDMAALRPTVFCSVPRL 353
H+ + V V F D +KL++ R T + P
Sbjct: 205 YHVIG--------FFAVLVAALALDGTYVVVEEFDPADALKLIE---QERVTSLFATPTH 253
Query: 354 YNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRV 413
+ + A A L F A M P + +R
Sbjct: 254 LDALAAAAEGAPLKLDSLEHVTFAGA------TM-----PDAVLER-------------- 288
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473
+ G YG TE ++ L D +G P E
Sbjct: 289 -----------------VNQHLPGEKVNIYGTTEA---MNSLYMRDPRTGTEMRPGFFSE 328
Query: 474 IKLVDVPEMNYTSEDQPCPRGE----ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
+++V + S D+ P GE + F GY T E + +DGW+ T D+
Sbjct: 329 VRIVRIGG----SPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKL-QDGWYRTSDV 383
Query: 530 GMWIPGGRLKIIDR 543
+ P G ++I+ R
Sbjct: 384 AVVDPSGTVRILGR 397
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 38/190 (20%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV--PLYDTL 172
TY E + + L G+ KG + ++ PE A ++ PL++
Sbjct: 75 TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFA--LLGALKNGAIVGPLFEAF 132
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVPTVRLIVVIGGIDDQIPSLPITTG 230
+AV+ + + + + T +LL ++P+++ ++++G ++ P
Sbjct: 133 MEEAVRDRLEDSEAKVLI----TTPALLERKPADDLPSLKHVLLVGEDVEEGP------- 181
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290
L ++ L+ Q +D A + YTSG+TG PKG + H ++
Sbjct: 182 -GTLDFNALMEQASDEF-DIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKY 239
Query: 291 GTKFYPSDVY 300
+ DVY
Sbjct: 240 VLDLHEDDVY 249
|
Length = 570 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 46/198 (23%), Positives = 71/198 (35%), Gaps = 32/198 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI----VDHACSAYSFISVPLY 169
++Y E + LI G+ +G+ E ++ V A AY VPL
Sbjct: 538 LSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAY----VPLD 593
Query: 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229
D + Y+++ + V+ + L L VP + SL +
Sbjct: 594 PEYPQDRLAYMLDDSGVRLLLTQSHLLAQL-----PVP------------AGLRSLCLDE 636
Query: 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
+L G S P PD++A + YTSG+TG PKG +SHG L V
Sbjct: 637 PADLL-------CGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIA 689
Query: 290 LGTKFYPSDVYISYLPLA 307
+ D + A
Sbjct: 690 ERLQLAADDSMLMVSTFA 707
|
Length = 3956 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 223 PSLPITTGVQILTYSNLLSQ------GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVL 276
LP+ G++ L +L Q G S+ P P ++A + YTSG+TG PKGA
Sbjct: 1683 ARLPLPDGLRSL----VLDQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGN 1738
Query: 277 SHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
HG L+ + + +DV + + A
Sbjct: 1739 RHGALVNRLCATQEAYQLSAADVVLQFTSFA 1769
|
Length = 3956 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 20/69 (28%)
Query: 487 EDQPCP---RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG------------- 530
E + P GEICV GP +F GYY + + DGWF TGD+G
Sbjct: 357 EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415
Query: 531 ---MWIPGG 536
M+I GG
Sbjct: 416 ASDMYISGG 424
|
Length = 528 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 207 PTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSG 266
P+VR +V +GG + G T + LL G + P + PDD+A I +TSG
Sbjct: 135 PSVRRLVTVGG--------RLLWGGT--TLATLLRDGAAAPFPMADLAPDDMAAILFTSG 184
Query: 267 TTGTPKGAVLSHGNLIASV 285
+TGTPKG V +HG A +
Sbjct: 185 STGTPKGVVYTHGMFEAQI 203
|
Length = 552 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLA 307
P PDD+A + Y+SG+T P+G +++H L+A++ + G K P D +S+LP
Sbjct: 169 ALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFY 228
Query: 308 H 308
H
Sbjct: 229 H 229
|
Length = 579 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 51/204 (25%), Positives = 82/204 (40%), Gaps = 26/204 (12%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TYGE + GL G+ +G + + N PE+ V A P+ L
Sbjct: 12 VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT-VRLIVVIGGIDDQIPSLPITTGVQ 232
+ YIV+ + + + ++ +E+P V L++V+ G +P G +
Sbjct: 72 AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAG---PVP------GFR 122
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVA--TICYTSGTTGTPKG------AVLSHGNLIAS 284
+Y L+ QP +P D+ A + Y+SGTTG PKG +
Sbjct: 123 --SYEEALAA-----QPDTPI-ADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMM 174
Query: 285 VAGATLGTKFYPSDVYISYLPLAH 308
+A G P VY+S PL H
Sbjct: 175 LALLGFGMYGGPDSVYLSPAPLYH 198
|
Length = 502 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 50/191 (26%), Positives = 65/191 (34%), Gaps = 38/191 (19%)
Query: 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193
G+ KG + L NRPE+L + LG AV ++N
Sbjct: 83 GVGKGDVVALLMENRPEYLAAWLGLA-----------KLG--AVVALLNTQ--------- 120
Query: 194 QTLNSLLSCLSEVPTVRLIV----------VIGGIDDQIPSLPIT--TGVQILTYSNL-- 239
Q L L+ V LIV + T Y +L
Sbjct: 121 QRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAA 180
Query: 240 LSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS 297
+ G P S D A YTSGTTG PK AV+SH + ++ G + P
Sbjct: 181 AAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPD 240
Query: 298 DVYISYLPLAH 308
DV LPL H
Sbjct: 241 DVLYCCLPLYH 251
|
Length = 600 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-07
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 22/142 (15%)
Query: 412 RVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS--CLISQLDEGDNLSGHV--G 466
+R + G L +++ + ++ G R+ YG TET+ ++D D G V G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKE--VID-- 519
P A + ++D + +P P GE+ + G + +GY T E V D
Sbjct: 269 RPIANTRVYVLD-------EDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPF 321
Query: 520 -EDG--WFHTGDIGMWIPGGRL 538
G + TGD+ W+P G L
Sbjct: 322 GGPGERLYRTGDLARWLPDGNL 343
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 55/212 (25%), Positives = 88/212 (41%), Gaps = 45/212 (21%)
Query: 347 FCSVPRLYNRIYAGITSAVR--TSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404
FC +P LY+ +G+ +R +GG +L Y K NPS + LV +
Sbjct: 164 FCVLP-LYH--VSGLMQFMRSFLTGG---KLVILPYKRLKSGQELPPNPSDFFLSLVPTQ 217
Query: 405 IKDKLGGRVRFMGS------GASPLSPDVLD---FLKICFGGRVTEGYGMTETSCLISQL 455
++ L R +++ G +P P +L+ L++ R+ YGMTET+ I+ L
Sbjct: 218 LQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQL----RLAPTYGMTETASQIATL 273
Query: 456 DEGDNLSGHVGS----PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDE 511
D L+G+ S P+A I G I ++ + GYY
Sbjct: 274 KPDDFLAGNNSSGQVLPHAQITIP--------------ANQTGNITIQAQSLALGYY--- 316
Query: 512 IQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+++D G F T D+G G L I+ R
Sbjct: 317 ---PQILDSQGIFETDDLGYLDAQGYLHILGR 345
|
Length = 452 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
PDD+A + YTSG+TG PKG ++ H L+ +A
Sbjct: 92 PDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 73/314 (23%), Positives = 105/314 (33%), Gaps = 67/314 (21%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHIY 310
PK DD A I +TSG+TG PKG V +H A + L + + D ++ P ++
Sbjct: 82 PKADDPAAILFTSGSTGPPKGVVYTHRTFAAQI--DALRSLYGIREGDRDLAAFPPFALF 139
Query: 311 ERANQVMTVYSGVAVGF-YQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSG 369
A V TV + D KL + + + P L +
Sbjct: 140 GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEENGIQLP 199
Query: 370 GLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429
LR +LS P P D L V + A +P
Sbjct: 200 SLRR-------------VLSAGAPVP----------PDLLRRFVANLMPEAEIHTP---- 232
Query: 430 FLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGH-----------VGSPNAACE---I 474
YG TE L ++ ++ + L+ VG P + I
Sbjct: 233 -------------YGATE--ALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRII 277
Query: 475 KLVDVP--EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK-EVIDED--GWFHTGDI 529
+ D P + E P GEI V GP + + YY TK I + W GD+
Sbjct: 278 PIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDL 337
Query: 530 GMWIPGGRLKIIDR 543
G + GRL R
Sbjct: 338 GYFDDQGRLWFCGR 351
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 29/151 (19%)
Query: 418 SGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV--------GSPN 469
G S + P ++ + +G V +GMTETS + + +SG G
Sbjct: 305 VGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFP 364
Query: 470 AACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT----------KEVI 518
A+ E ++V+ + M T ++ GEI VRG + YY + ++V
Sbjct: 365 ASLEYRIVNDGQVMESTDRNE----GEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVE 420
Query: 519 D------EDGWFHTGDIGMWIPGGRLKIIDR 543
D DGW TGD+G G L I DR
Sbjct: 421 DANDRFTADGWLRTGDVGSVTRDGFLTIHDR 451
|
Length = 576 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 47/172 (27%), Positives = 60/172 (34%), Gaps = 52/172 (30%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGR------VTEGYGMTETSCLISQLDEG--------- 458
R G GA + PDVL F YG+ E + +S G
Sbjct: 302 RVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVD 361
Query: 459 -DNLSGH---VGSPNAA--------C-------EIKLVDVPEMNYTSEDQPCPR---GEI 496
D L V C EI++ + P P G I
Sbjct: 362 RDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-------EAGMPLPERVVGHI 414
Query: 497 CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-----GRLK--II 541
CVRGP + GY++DE V+ DGW TGD+G + G GR K II
Sbjct: 415 CVRGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYLLDGYLYITGRAKDLII 465
|
Length = 579 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASV 285
PDD A + YTSG+TG PKG V++H N+ +
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRNICNFL 128
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
DQ+P + L Y+ L+ P +P A I +TSG+TG PKG ++
Sbjct: 563 ADQLPRFADVPDLTSLCYNAPLA--PQGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQ 620
|
Length = 1296 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 223 PSLPITTGVQILTYSNLLS-QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
LPI G+ L +G P PD++A + YTSG+TG PKG +SHG+L
Sbjct: 4660 QRLPIPDGLASLALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSL 4719
Query: 282 IASVAGATLGTKFYPSDVYISYLPLA 307
+ + + P D + ++ +
Sbjct: 4720 VNHLHATGERYELTPDDRVLQFMSFS 4745
|
Length = 5163 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 225 LPIT-TGVQILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
LP+ G+ ++T L + K DD I +TSGTTG PKG +SH NL
Sbjct: 109 LPLEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNL 168
Query: 282 I 282
+
Sbjct: 169 V 169
|
Length = 503 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 24/146 (16%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL--ISQLDEGDNLSGHVGSPN 469
+R + G ++D R+ YG TE + S+L G ++ +G P
Sbjct: 209 SLRTLILGGEACPQALVDRWSKP--RRLLNTYGPTEATVTATASRLTPGKPVN--IGRPL 264
Query: 470 AACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGW--- 523
++D P GE+C+ GP + +GY T E D +
Sbjct: 265 PNYTCWVLDPDLEP------LVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLN 318
Query: 524 ------FHTGDIGMWIPGGRLKIIDR 543
+ TGD+ ++ G L+ + R
Sbjct: 319 NPGGRIYRTGDLVRYLEDGSLEFLGR 344
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 31/81 (38%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 251 SPPKPDDV---ATIC--YTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305
PP DDV + YTSGTTG PK AV+ H AGA P DV LP
Sbjct: 94 EPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLP 153
Query: 306 LAHIYERANQVMTVYSGVAVG 326
L Y A +M V + G
Sbjct: 154 L---YHSAGGIMGVGQALLHG 171
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
VR ++ G +++ ++ + V + + RS +PP A + T+G+T
Sbjct: 109 VRTVLSHGSHLERLRAVD--SSVTVHDLATAAHTNRS--ASLTPPDSGGPAVLQGTAGST 164
Query: 269 GTPKGAVLSHGNLIASVAG--ATLGTKFYPSDVYISYLPLAH 308
GTP+ A+LS G +++++ G A +G +DV S+LPL H
Sbjct: 165 GTPRTAILSPGAVLSNLRGLNARVGLD-AATDVGCSWLPLYH 205
|
Length = 525 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 203 LSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC 262
+++ PT+R ++V G + L P P +VA
Sbjct: 148 VAKHPTLRHVIVAGEAEHPSVLE------------AALCHPAGLFTPAPPADAGEVAFFQ 195
Query: 263 YTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310
+ GTTGTPK +H + SV + F VY+ LP AH +
Sbjct: 196 LSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNF 243
|
Length = 542 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 5e-06
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV-GSPNAAC 472
F+ +GA P+ +++ G + +GMTE + +++ D+ + G P
Sbjct: 315 FLCAGA-PIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGV 373
Query: 473 EIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDI 529
E+K++D + +GE VRG F GY K D +GWF TGD+
Sbjct: 374 EVKVID-------ANGAKLSQGETGRLLVRGCSNFGGYLKRP--HLNSTDAEGWFDTGDL 424
Query: 530 GMWIPGGRLKIIDR 543
G ++I R
Sbjct: 425 AFQDAEGYIRINGR 438
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHV-GSP-NAA 471
R + G + LS + + G ++ + +GM E ++LD+ + H G P +
Sbjct: 308 RLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPD 367
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEI---CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
E+++VD ++ P GE+ RGP +GYY+ D DG++ +GD
Sbjct: 368 DEVRVVD-------ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGD 420
Query: 529 I 529
+
Sbjct: 421 L 421
|
Length = 542 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289
P DDVA + TSGTTGTPKGA+L+ L AS A AT
Sbjct: 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTAS-ADAT 67
|
Length = 358 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
DG+V + TY E + SGL G+ KG +G+Y PE ++ A + I
Sbjct: 2 DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFCV 192
+VP++ GPDAV + A + +
Sbjct: 59 AVPIFSGFGPDAVATRLQDAEAKVLITA 86
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 225 LPITTGVQILTYSNLLS-QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA 283
LP+ GV L + P +++A + YTSG+TG PKG +SHG L+A
Sbjct: 2114 LPLPAGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVA 2173
Query: 284 SVAGATLGTKFYPSDVYISYLPLA 307
A + P+D + ++ +
Sbjct: 2174 HCQAAGERYELSPADCELQFMSFS 2197
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 7e-06
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 223 PSLPITTGVQILTYSN--LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN 280
LP+ GVQ+L +G S P + P+++A + YTSG+TG PKGA H
Sbjct: 620 RKLPLAAGVQVLDLDRPAAWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 281 LIASV 285
L +
Sbjct: 680 LSNRL 684
|
Length = 5163 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHG---NLIASV 285
P PDD+A + +TSG+TG PKG +++H N I V
Sbjct: 119 PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 443 YGMTETSCLISQLDEGD----NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEI-- 496
+GM E ++LD+ D G SP+ E+ + D ++ P P+GE+
Sbjct: 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDD--EVWVAD-------ADGNPLPQGEVGR 382
Query: 497 -CVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
RGP F+GYYK D +G++ +GD+ P G + ++ R
Sbjct: 383 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGR 430
|
Length = 536 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 38/157 (24%), Positives = 56/157 (35%), Gaps = 22/157 (14%)
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189
L G+ KG I ++ N + A + VP PD V Y+ + +A+
Sbjct: 49 LAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM 108
Query: 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQP 249
C + + P + +V IGG + L +L G
Sbjct: 109 ICHADFPEHAAAVRAASPDLTHVVAIGGA-------RAGLDYEALVARHL---GA----- 153
Query: 250 FSPPKP-----DDVATICYTSGTTGTPKGAVLSHGNL 281
DD +TSGTTG PK AVL+HG +
Sbjct: 154 --RVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQM 188
|
Length = 528 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 21/111 (18%)
Query: 443 YGMTETSCLISQ-------LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE 495
YG TE + ++ LD+ L +G + ++D E + + GE
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLP--IGYAKPDSPLLIID-EEGTKLPDGEQ---GE 346
Query: 496 ICVRGPLIFKGYYKDEIQTKEV-IDEDGW--FHTGDIG-----MWIPGGRL 538
I + GP + KGY + +T E DG +HTGD G + GR+
Sbjct: 347 IVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFYQGRI 397
|
Length = 503 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 69/288 (23%), Positives = 108/288 (37%), Gaps = 60/288 (20%)
Query: 254 KPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYER 312
K + I +TSGTTG PK A SH +L + PSD+ + I
Sbjct: 172 KSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAA 231
Query: 313 ANQVMTVYSGVAVGFY----QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
+ + + A F + D ++ ++ T FCS P +Y
Sbjct: 232 IWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVY-------------- 277
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
R+ +Q + S K S +R +G PL+P+VL
Sbjct: 278 -----RML------VQQDLTSYKFKS------------------LRHCVTGGEPLNPEVL 308
Query: 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGDNL-SGHVGSPNAACEIKLVDVPEMNYTSE 487
+ K G + EGYG TET LI +G + G +G + +++++D N
Sbjct: 309 EQWKAQTGLDLYEGYGQTETG-LICANFKGMKIKPGSMGKASPPYDVQIIDD-NGNVLP- 365
Query: 488 DQPCPRGEICVR-GPL----IFKGYYKDEIQTKEVIDEDGWFHTGDIG 530
P G+I +R P +F Y + +T I D + TGD G
Sbjct: 366 --PGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRG 410
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 44/203 (21%), Positives = 75/203 (36%), Gaps = 26/203 (12%)
Query: 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC--SAYSFISVPLYDTL 172
TY E + G+ +G + ++ N +L V A S + V + L
Sbjct: 26 TYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH--L 83
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
P YIV+ + +A+ L+ + L + P VR +V+ G +
Sbjct: 84 TPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEG--------- 134
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDV--ATICYTSGTTGTPKG--AVLSHGNLIASVAGA 288
+ Y+ ++ P + P D+ + Y+SGTTG PKG L +
Sbjct: 135 FVGYAEAVAG-----LP-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLT 188
Query: 289 TLGTKFYPSD---VYISYLPLAH 308
+ + VY+S PL H
Sbjct: 189 AFLQRLWGFRSDMVYLSPAPLYH 211
|
Length = 511 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 43/173 (24%), Positives = 64/173 (36%), Gaps = 36/173 (20%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD-----HACSAYSFISVPL 168
++Y E + LI G+ +G+ V R +IV A AY VPL
Sbjct: 3121 LSYAELNRRANRLAHRLIAIGVGPDVLVGVA-VERSVEMIVALLAVLKAGGAY----VPL 3175
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + Y++ + V+ + T LL LP
Sbjct: 3176 DPEYPRERLAYMIEDSGVKLLL----TQAHLLE----------------------QLPAP 3209
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
G LT L G S P + +++A + YTSG+TG PKG + HG L
Sbjct: 3210 AGDTALTLDRLDLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGAL 3262
|
Length = 3956 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 418 SGASPLSPDVLDFLKICF--GGRVTEGYGMTET--SCLIS---QLDEG----DNLSGH-V 465
S +P+ V++ + + YG TE I L DN +G V
Sbjct: 295 SAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICV 354
Query: 466 GSPNAACEIKLVDVPE--MNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKE--VI 518
G P E++++ + + + + GEI V GP++ + YY T+ +
Sbjct: 355 GRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIP 414
Query: 519 DEDG--WFHTGDIGMWIPGGRL 538
D G W GD+G GRL
Sbjct: 415 DGQGDVWHRMGDLGYLDAQGRL 436
|
Length = 552 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVY 300
P+D A + +TSGTTG PKG + H ++A A A P DVY
Sbjct: 88 PEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY 133
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTET-SCLISQLDEGDNLSGHVGSPN 469
+R + S PL+P+V+ + + G + + + TET + +I+ G +G P
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVIDEDGWFHTG 527
E +++ T P GE+ ++ P +F+GY +E + DGW+ TG
Sbjct: 267 PGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSF-VDGWYLTG 325
Query: 528 DIGMWIPGGRLKIIDR 543
D+ G + R
Sbjct: 326 DLAYRDEDGYFWFVGR 341
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 196 LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKP 255
+ + +P++ +VV+ + + L +S + F
Sbjct: 178 REKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLE--FERLPF 235
Query: 256 DDVATICYTSGTTGTPKGAVLSHG 279
D I Y+SGTTG PK V G
Sbjct: 236 DHPLWILYSSGTTGLPKCIVHGAG 259
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVA 286
DD A I YTSGTTG PKG V +H A
Sbjct: 99 KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAA 130
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 12/175 (6%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDT-L 172
+TY E + GL+ G+ G + + N ++ + + L +T
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNH-RGFVLALYAAGKVGARIILLNTGF 133
Query: 173 GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232
+ + V+A+ LLS L RL G DD PS
Sbjct: 134 SGPQLAEVAAREGVKALV-YDDEFTDLLSALPP-DLGRLRAWGGNPDDDEPSGS-----T 186
Query: 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
T +L++ + P PPKP + + TSGTTGTPKGA + +A +AG
Sbjct: 187 DETLDDLIAGSSTAPLP-KPPKPGGI--VILTSGTTGTPKGAPRPEPSPLAPLAG 238
|
Length = 549 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIA 283
PDD+A + YTSG+TG PKG + H N A
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAA 132
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETS-CLISQLDEGDNLSGHVGSPNAA 471
++ + S LSP++ FG + YG TE + I+ ++ G VG P
Sbjct: 325 LKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKG 384
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGE---ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528
+K++D PRG I V F+GY + K++I DG +GD
Sbjct: 385 VTVKILD-------ENGNEVPRGVVGRIFVGNGFPFEGYTDG--RDKQII--DGLLSSGD 433
Query: 529 IGMWIPGGRLKIIDR 543
+G + G L + R
Sbjct: 434 VGYFDEDGLLFVDGR 448
|
Length = 549 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
R+R++ +GA L + FG R+ EGYG+TE + ++S G VG
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPG 539
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDE---------IQTKEVIDEDG 522
+ +L+ VP + E G + ++GP I GY + E + E G
Sbjct: 540 MDARLLSVPGI----EQG----GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERG 591
Query: 523 WFHTGDI 529
W+ TGDI
Sbjct: 592 WYDTGDI 598
|
Length = 718 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 13/117 (11%)
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
PQ LL L T+ +V+ G ++ +L L
Sbjct: 85 PQLPQPLLEELLPSLTLDFALVLEG-ENTFSALT------------SLHLQLVEGAHAVA 131
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309
+P +AT+ TSG+TG PK AV + +AS G F D ++ LPL H+
Sbjct: 132 WQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 105 DGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164
DGT EY T+G+ A + + L G+ +G +G+Y PE I A +
Sbjct: 1 DGTREEY---TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAV 57
Query: 165 SVPLYDTLGPDAVKYIVNHASVQAVFC 191
SVPL GPDAV++ + + + +
Sbjct: 58 SVPLSVLFGPDAVEHRLRDSGARVLVT 84
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHG------NLIASVAGATLGTKFYPSDVYISYLPLAH 308
PDD A + YTSGTTG PKG +S N ++ + Y + +PL H
Sbjct: 86 PDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTY------TCMPLYH 139
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-- 295
+L S S+ +P P A + YTSG+T TP G ++SH N+IA+ L + ++
Sbjct: 145 DLDSPRGSDARPRDLPST---AYLQYTSGSTRTPAGVMVSHRNVIANF--EQLMSDYFGD 199
Query: 296 -----PSDVYI-SYLPLAH 308
P D + S+LP H
Sbjct: 200 TGGVPPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 14/154 (9%)
Query: 126 VGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHAS 185
GL G+ G C+ L N + +A +VP+ P+ + YI+ +
Sbjct: 24 AAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSG 83
Query: 186 VQAVFCVPQTLNSLLSCLSE------VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239
+ + L+ L S L VPT I I + + P + +
Sbjct: 84 ARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGA----IDWEGW 139
Query: 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273
L+Q +P+ P ++ YTSGTTG PKG
Sbjct: 140 LAQQ----EPYDGPPVPQPQSMIYTSGTTGHPKG 169
|
Length = 509 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 489 QPCP---RGEICVRGPLIFKGYYKDEIQTKE--VIDEDG--WFHTGDIGMWIPGGRLKII 541
+ CP GE+ + G + GY+ D T E + G + TGD+G + P G ++ +
Sbjct: 319 RDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFL 378
Query: 542 DR 543
R
Sbjct: 379 GR 380
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
P+ L+ + E +L+ + LP+ GVQ+L L +G N +P
Sbjct: 3139 PEYPEERLAYMLEDSGAQLL-----LSQSHLRLPLAQGVQVL----DLDRGDENYAEANP 3189
Query: 253 PK---PDDVATICYTSGTTGTPKGAVLSHGNL 281
P+++A + YTSG+TG PKG + H L
Sbjct: 3190 AIRTMPENLAYVIYTSGSTGKPKGVGIRHSAL 3221
|
Length = 5163 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 225 LPIT-TGVQILTYSNL--LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL 281
L I G QI+T S L + K DD I YTSG+TG PKG +SH NL
Sbjct: 107 LSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNL 166
Query: 282 I 282
+
Sbjct: 167 V 167
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 17/137 (12%)
Query: 414 RFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGSPNAA 471
R + A+P DV + +G + E YG TE+ ++ D LS G VG
Sbjct: 274 RHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESG-AVTFATSEDALSHPGTVGKAAPG 332
Query: 472 CEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLI--FKGYYKDEIQTKEVIDEDGWFHT 526
E++ VD + +P P+ GEI R F + K E + + ID G+ +
Sbjct: 333 AELRFVD-------EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAE--IDRGGFITS 383
Query: 527 GDIGMWIPGGRLKIIDR 543
GD+G G L + DR
Sbjct: 384 GDVGYLDADGYLFLCDR 400
|
Length = 509 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 411 GRVRFMGSGASPLSPDVLD-FLKIC--FG---GRVTEGYGMTETSCLIS----------- 453
G +R +G P+ D + F FG G YG+ E++C ++
Sbjct: 272 GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVD 331
Query: 454 --QLDEGDNLSGH--VGSPNAACEIKLVDVPEMNYTSEDQPCPR-----GEICVRGPLIF 504
D+G H +G+P E+++ + D GEI +RG +
Sbjct: 332 EVTTDDGSGARRHAVLGNPIPGMEVRI--------SPGDGAAGVAGREIGEIEIRGASMM 383
Query: 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
GY ID D WF TGD+G + GG
Sbjct: 384 SGYLGQA-----PIDPDDWFPTGDLGYLVDGG 410
|
Length = 525 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 31/97 (31%)
Query: 249 PFSPPKP---DDVATICYTSGTTGTPKGAVLSH-GNLIASVAGATLGTKFY----PSDV- 299
P+ P+P +D I YTSG+TG PKG V + G L+ A K+ P DV
Sbjct: 215 PYCEPEPMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV----YAATTFKYVFDIHPDDVY 270
Query: 300 -------------YISYLPLAHIYERANQVMTVYSGV 323
YI Y PLA+ A VM Y G
Sbjct: 271 WCTADIGWITGHSYIVYGPLAN---GATTVM--YEGA 302
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 82/357 (22%), Positives = 127/357 (35%), Gaps = 100/357 (28%)
Query: 250 FSPPKP--DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLA 307
+ PP+ D +A + YTSG+T P G ++H NL +V + D +S+LP
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFF 231
Query: 308 HIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
H + + + G + M P F P + R A
Sbjct: 232 H---DMGLITVLLPALL-----GHYITFMS------PAAFVRRPGRWIRELA-------R 270
Query: 368 SGGLRERLFNAAYN-AKKQAMLSG--KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLS 424
G F+AA N A + A G K+ P D + +K L +G+ P+S
Sbjct: 271 KPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLD---LSNVKGLL--------NGSEPVS 319
Query: 425 PDVLDFLKICFG------GRVTEGYGMTETSCLIS----------------QLDEGDNLS 462
P + F + YGM E + +S +L+ G +
Sbjct: 320 PASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVE 379
Query: 463 GHVGSPNAACEIK-----------LVDVPEMNYTSEDQPCPR-GEICVRGPLIFKGYYKD 510
+PNA ++ +VD PE T+ + P + GEI + G I GY+
Sbjct: 380 VPADAPNAVAQVSAGKVGVSEWAVIVD-PE---TASELPDGQIGEIWLHGNNIGTGYWGK 435
Query: 511 EIQTKEVI-----------------DEDGWFHTGDIGMWIPG-----GRLK---IID 542
+T D+ W TGD G++ G GR+K IID
Sbjct: 436 PEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFDGELYITGRVKDLVIID 492
|
Length = 631 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 251 SPPKPDDVATICYTSGTTGTPKGAVLSH-----GNLIASVAGATLGTKFYPSDVYISYLP 305
S A YTSGTTG PK A +SH + + S+ G T DV + LP
Sbjct: 137 SGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSLCGVT------ADDVVYTTLP 190
Query: 306 LAH 308
L H
Sbjct: 191 LYH 193
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 27/114 (23%)
Query: 443 YGMTE-----TSCLISQ--LDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--- 492
YG TE TS I+Q LD+ L +G + ++D E +P P
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLP--IGFAKPDMNLFIMD-------EEGEPLPEGE 341
Query: 493 RGEICVRGPLIFKGYYKDEIQTKEVI--DEDGW-FHTGDIG-----MWIPGGRL 538
+GEI + GP + KGY + +T E E + TGD G GRL
Sbjct: 342 KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDGQLFYQGRL 395
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNL 281
P A + YTSG+TG PKG V+SHG +
Sbjct: 2332 PQHQAYLIYTSGSTGKPKGVVVSHGEI 2358
|
Length = 4334 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.95 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.94 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.93 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.91 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.85 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.75 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.72 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.57 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.26 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.86 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 97.21 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 95.94 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 95.76 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 95.39 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 93.7 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 91.49 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 86.02 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 84.4 |
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-104 Score=812.87 Aligned_cols=482 Identities=47% Similarity=0.814 Sum_probs=445.3
Q ss_pred CccccCCCCC-ccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcC
Q 009114 56 WNVYRSSRSP-LKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG 134 (543)
Q Consensus 56 ~~i~R~~~~~-~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g 134 (543)
+.+||+...+ ..+... ...+..|++++|.+++.++|+.+|||+|...+ ..++|+|+||+|+++++.++|++|+++|
T Consensus 53 ~~~~~s~~~~~~~~~~~--~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG 129 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSC--PFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLG 129 (691)
T ss_pred CCceeeeeccCCCCCCC--CCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhC
Confidence 4678887665 232221 24588999999999999999999999995444 4578999999999999999999999999
Q ss_pred CCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEec-CcCHHHHHhhccC--CCCeeE
Q 009114 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV-PQTLNSLLSCLSE--VPTVRL 211 (543)
Q Consensus 135 ~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~-~~~~~~l~~~~~~--~~~l~~ 211 (543)
+++++.||||+.||+||+++++||..+|.++||||+++++++++||++++++.+|||+ +++++++++.... ++.+|.
T Consensus 130 ~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~ 209 (691)
T KOG1256|consen 130 VKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKA 209 (691)
T ss_pred CCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCcccee
Confidence 9999999999999999999999999999999999999999999999999999999999 7788888887774 788999
Q ss_pred EEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCC-CCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhh--
Q 009114 212 IVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPF-SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA-- 288 (543)
Q Consensus 212 ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~-- 288 (543)
+|.+++..+.....+.+.++.+++|+++++.|+++...+ .+++|||+|+|+|||||||+|||||+||+|+++.+...
T Consensus 210 iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~ 289 (691)
T KOG1256|consen 210 IIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFF 289 (691)
T ss_pred EEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhh
Confidence 999999998888889999999999999999998877766 48999999999999999999999999999999966532
Q ss_pred -hcC---cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHH
Q 009114 289 -TLG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (543)
Q Consensus 289 -~~~---~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~ 364 (543)
... ......|+++|||||+|++++++....++.|++|+|+++|+..+.++|+++|||+|++|||+|+++++.++++
T Consensus 290 ~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~ 369 (691)
T KOG1256|consen 290 LSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQ 369 (691)
T ss_pred hhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHH
Confidence 221 1223479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCchHHHHHHHHHHHHH-HHHhcCCCC--CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCcccc
Q 009114 365 VRTSGGLRERLFNAAYNAKK-QAMLSGKNP--SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTE 441 (543)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~k~-~~~~~~~~~--~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~ 441 (543)
+++.+.+++++|++|++.|. ..+..|... .++||+++|+|+++.+|+++|.+++|+||+++++.+|++.++||+|++
T Consensus 370 ~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~e 449 (691)
T KOG1256|consen 370 VQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLE 449 (691)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeee
Confidence 99999999999999999999 778888776 599999999999999999999999999999999999999999999999
Q ss_pred ccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCC
Q 009114 442 GYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521 (543)
Q Consensus 442 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~ 521 (543)
+||+|||++.++...+.+...++||.|+|++++|++||||++|.+.+. +|||||||++||+|||+||++|+|+||+|
T Consensus 450 GYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~---~GEIcirG~~Vf~GYyK~p~~T~e~ideD 526 (691)
T KOG1256|consen 450 GYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGS---KGEICVRGPNVFMGYYKDPEKTAEAIDED 526 (691)
T ss_pred cccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCC---cceEEEecchhceeccCChHHHhhhhccc
Confidence 999999998888888888899999999999999999999999999998 89999999999999999999999999999
Q ss_pred CeeeccceEEEecCCcEEEecC
Q 009114 522 GWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 522 gw~~TGDig~~~~~G~l~i~gR 543 (543)
||+||||+|+||++|.|+|+||
T Consensus 527 GWLhTGDiG~~~p~G~l~IidR 548 (691)
T KOG1256|consen 527 GWLHTGDIGEWDPNGTLKIIDR 548 (691)
T ss_pred cccccccceeECCCccEEEEec
Confidence 9999999999999999999999
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-98 Score=735.74 Aligned_cols=497 Identities=38% Similarity=0.659 Sum_probs=459.4
Q ss_pred CceEEcCCCCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEe--------ecCc------
Q 009114 42 GYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVR--------VDGT------ 107 (543)
Q Consensus 42 ~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~--------~~~~------ 107 (543)
+|.+++.....+.++.+|||....++|.+. +.++..|++++|++.++++.+++++|+|.. .||+
T Consensus 6 ~~~V~~~~~~n~~e~~p~Rnv~~~~~L~~~--~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~ 83 (678)
T KOG1180|consen 6 KYRVKAKPAANEHETAPYRNVRSFDGLVSP--PNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYE 83 (678)
T ss_pred hcccccCCCCCCCCCccccccccCCCccCC--CCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEe
Confidence 367888887777889999999887777754 678999999999999999999999999965 3554
Q ss_pred ccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCc
Q 009114 108 VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSC-IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (543)
Q Consensus 108 ~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~-V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~ 186 (543)
.++|+|+||.|+++++.++|++|.++|+++++. |+|+++.+.+|+++++||++++..+|.+|.+|+.+.+.+-|+++++
T Consensus 84 Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~ 163 (678)
T KOG1180|consen 84 LGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETES 163 (678)
T ss_pred ccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccc
Confidence 788999999999999999999999999998775 9999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCC----CcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEE
Q 009114 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSL----PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATIC 262 (543)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~ 262 (543)
+.||++.+.++++...++..+.+|.||.++..+...... ....++++++|++++..|++...++.++.|+|+|+||
T Consensus 164 ~~i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IM 243 (678)
T KOG1180|consen 164 TAIFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIM 243 (678)
T ss_pred eEEEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEE
Confidence 999999999999999888999999999999754332221 1335789999999999999987777788999999999
Q ss_pred ecCCCCCCccEEEecHHHHHHHHHhhhcC-cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhH------
Q 009114 263 YTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKL------ 335 (543)
Q Consensus 263 ~TSGTTG~PKgv~~th~~l~~~~~~~~~~-~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l------ 335 (543)
|||||||.||||+++|+|+++.+.+.... ..+++.|+++.||||+|++++...+.+++.|+.+++.+ +..|
T Consensus 244 YTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S--~~TLtdts~k 321 (678)
T KOG1180|consen 244 YTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSS--PLTLTDTSSK 321 (678)
T ss_pred EcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCC--cceecccchh
Confidence 99999999999999999999999988766 46899999999999999999999999999999999955 3333
Q ss_pred -----HHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcC
Q 009114 336 -----MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410 (543)
Q Consensus 336 -----~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g 410 (543)
--|+..+|||+|.+||.+|+++.+.+.+++++.+.+.+.+|..|+..|+........-+++||.+||+|+|..+|
T Consensus 322 i~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lG 401 (678)
T KOG1180|consen 322 IKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLG 401 (678)
T ss_pred hccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhC
Confidence 237788999999999999999999999999999999999999999999999887777789999999999999999
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCC
Q 009114 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (543)
Q Consensus 411 ~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p 490 (543)
++||++++||+||+++..+|+..++||++.+|||+||+|+..+...+.+...|.||.|++++++|++|.+|++|.+.++|
T Consensus 402 G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P 481 (678)
T KOG1180|consen 402 GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP 481 (678)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCccchhhhcCChhhhhhhcCC-CC--eeeccceEEEecCCcEEEecC
Q 009114 491 CPRGEICVRGPLIFKGYYKDEIQTKEVIDE-DG--WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 491 ~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~-~g--w~~TGDig~~~~~G~l~i~gR 543 (543)
|+|||||+|++|..|||||||+|++.|.. || ||+|||||++.+||.|+||||
T Consensus 482 -PrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDR 536 (678)
T KOG1180|consen 482 -PRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDR 536 (678)
T ss_pred -CCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeec
Confidence 89999999999999999999999999976 88 999999999999999999999
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-82 Score=665.25 Aligned_cols=444 Identities=38% Similarity=0.617 Sum_probs=375.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...++.+++.+.++.+|+..++..+ ..+.++.+||+|+++++.++|++|+.+|+..||+|+|++.||+||+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~ 88 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL 88 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 5578899999999999998888776 35678999999999999999999999999779999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-HHHHhhccCCCCeeEEEEeCCCCCCCC-----CCCcCCC
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-NSLLSCLSEVPTVRLIVVIGGIDDQIP-----SLPITTG 230 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-~~l~~~~~~~~~l~~ii~~~~~~~~~~-----~~~~~~~ 230 (543)
||+.+|++.||+|++++++++.|+|+++++++||++.... +.+......++.+..++...+...+.. .......
T Consensus 89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (613)
T COG1022 89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD 168 (613)
T ss_pred HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccc
Confidence 9999999999999999999999999999999999998544 444444443332221221111000000 0000011
Q ss_pred ceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcc-cCCCcEEEEeCChHHH
Q 009114 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPLAHI 309 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~d~~l~~lpl~h~ 309 (543)
.....+ .+ ... .......++++||+|+|+|||||||.|||||+||+|+++++.+...... ++++|+++|+|||+|+
T Consensus 169 ~~~~~~-~~-~~~-~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi 245 (613)
T COG1022 169 EGISLF-LI-DSA-GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHI 245 (613)
T ss_pred ccchhh-hh-ccc-ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHH
Confidence 111222 11 111 1112235678999999999999999999999999999999999988886 9999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-
Q 009114 310 YERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML- 388 (543)
Q Consensus 310 ~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~- 388 (543)
+++++.......++...++..++..++++++++|||++++|||+|+.+++.+.+++.+.+..++.+|++|+..+.....
T Consensus 246 ~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~ 325 (613)
T COG1022 246 FERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325 (613)
T ss_pred HHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 9999865555555566666789999999999999999999999999999999999999999999999999987754332
Q ss_pred ---cCCCC--CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCC
Q 009114 389 ---SGKNP--SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463 (543)
Q Consensus 389 ---~~~~~--~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 463 (543)
.+... ....|+|||+|+++.+|+++|++++||++|++++..|++.. ||++.+|||+|||++..+.+++.+...+
T Consensus 326 ~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~~~~g 404 (613)
T COG1022 326 ALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDRFVLG 404 (613)
T ss_pred hhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccCcccC
Confidence 22222 24589999999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+|++|+||+| .|||+||||+||+||||+||+|+++|++||||+|||+|.+|++|+|.|+||
T Consensus 405 tvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gR 470 (613)
T COG1022 405 TVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGR 470 (613)
T ss_pred CcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeec
Confidence 999999999999999 799999999999999999999999999999999999999999999999999
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-81 Score=682.30 Aligned_cols=488 Identities=24% Similarity=0.387 Sum_probs=416.7
Q ss_pred CCceEEcCCCCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHH
Q 009114 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAG 120 (543)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~ 120 (543)
..|+..++.+..+++|.+||.....++ .+.+...|+.++|.+.++++||++|+... + ....++++||+|+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~ 98 (746)
T PTZ00342 28 KGYSEICEKATNENESSVYCMKDHKKK-----SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFF 98 (746)
T ss_pred ceeeeEecCCCCCCCCCceecCchhhc-----ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHH
Confidence 458999999999999999997775554 13457899999999999999999999753 1 11246889999999
Q ss_pred HHHHHHHHHHHHc---CCCCC-----------CEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCc
Q 009114 121 TARTEVGSGLIYH---GISKG-----------SCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (543)
Q Consensus 121 ~~~~~la~~L~~~---g~~~g-----------d~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~ 186 (543)
+++.++|++|.++ |+++| |+|+|+++|++||+++++||+++|+++||+|++++++++.|+|+++++
T Consensus 99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~ 178 (746)
T PTZ00342 99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL 178 (746)
T ss_pred HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence 9999999999974 99998 899999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCC-----------------CC-------------------------
Q 009114 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQI-----------------PS------------------------- 224 (543)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~-----------------~~------------------------- 224 (543)
++||++.+.++.+.+...+++.++.+|++++..... ..
T Consensus 179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (746)
T PTZ00342 179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL 258 (746)
T ss_pred CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999888888888777788899999987532110 00
Q ss_pred ---------------CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh
Q 009114 225 ---------------LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289 (543)
Q Consensus 225 ---------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~ 289 (543)
.....++.+..|+++.+.... ..+..+.+|+|+++|+|||||||.||||++||+|+++.+....
T Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~ 337 (746)
T PTZ00342 259 EYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT-NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLC 337 (746)
T ss_pred ccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc-CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHh
Confidence 001113344556666543221 2233446789999999999999999999999999998886654
Q ss_pred cCc--ccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhc
Q 009114 290 LGT--KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (543)
Q Consensus 290 ~~~--~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~ 367 (543)
... .....|++++++||+|++++...+.+++.|++++++++++..++++|++++||++++||++|+++++.+...+.+
T Consensus 338 ~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~ 417 (746)
T PTZ00342 338 KHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINN 417 (746)
T ss_pred hcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhh
Confidence 321 233568999999999999998888899999999999889999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHhcCCCCCchhhHH--hHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccCh
Q 009114 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL--VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGM 445 (543)
Q Consensus 368 ~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~--~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~ 445 (543)
.+.+++++|++|+..+..... ...++++|.+ +|+++|+.+|+++|.+++||+|+++++.++++..+|++++++||+
T Consensus 418 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGl 495 (746)
T PTZ00342 418 LPPLKRFLVKKILSLRKSNNN--GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGL 495 (746)
T ss_pred cCHHHHHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeecc
Confidence 999999999999999887543 2355778776 899999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCCCcCCCC-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCee
Q 009114 446 TETSCLISQLDEGDNLSGHVGSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524 (543)
Q Consensus 446 TE~~~~~~~~~~~~~~~~~vG~p~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~ 524 (543)
||+++.++.+.+.+...+++|+|+ |+++++|+|+++..... +.|.||||+|||++|.|||++|++|+++|++||||
T Consensus 496 TEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~---~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~ 572 (746)
T PTZ00342 496 TETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATD---TLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYF 572 (746)
T ss_pred CcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCC---CCCceEEEEecCcccccccCChhhhhhhcCcCCcc
Confidence 999877777666677889999998 99999999976533222 22589999999999999999999999999999999
Q ss_pred eccceEEEecCCcEEEecC
Q 009114 525 HTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 525 ~TGDig~~~~~G~l~i~gR 543 (543)
||||+|++|+||+|+|+||
T Consensus 573 ~TGDig~~d~dG~l~i~gR 591 (746)
T PTZ00342 573 KTGDIVQINKNGSLTFLDR 591 (746)
T ss_pred cCCcEEEECCCCeEEEEcc
Confidence 9999999999999999999
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-80 Score=679.77 Aligned_cols=504 Identities=84% Similarity=1.427 Sum_probs=448.9
Q ss_pred cCCceEEcCCCCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHH
Q 009114 40 EQGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEA 119 (543)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el 119 (543)
++.|+++++++.+++++.+||+...+..+.+.++..+...|++++|++.++++||++|++.+...++..++++++||+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el 84 (651)
T PLN02736 5 EQGYSVVLPEKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEA 84 (651)
T ss_pred ccCcceeCCCCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHH
Confidence 56699999999999999999999888888877776788899999999999999999999875222444456888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHH
Q 009114 120 GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199 (543)
Q Consensus 120 ~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l 199 (543)
.++++++|++|+++|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++.+..+.+
T Consensus 85 ~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~ 164 (651)
T PLN02736 85 GTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTL 164 (651)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred HhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHH
Q 009114 200 LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHG 279 (543)
Q Consensus 200 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~ 279 (543)
..+..+++.++.+++++.............+....+|+++.+.+.....+.....++|+++|+|||||||.||||++||+
T Consensus 165 ~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~ 244 (651)
T PLN02736 165 LSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHG 244 (651)
T ss_pred HHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecH
Confidence 77766777888888775432111111112345678899988765433333345678999999999999999999999999
Q ss_pred HHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHH
Q 009114 280 NLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (543)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~ 359 (543)
|+++.+.+....+.+.++|++++++|++|++++...+.+++.|++++++++++..++++|++++||+++++|++|+++++
T Consensus 245 ~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~ 324 (651)
T PLN02736 245 NLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYD 324 (651)
T ss_pred HHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHH
Confidence 99999888777788899999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCcc
Q 009114 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRV 439 (543)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i 439 (543)
.+...+...+.+++++++.++..+...+..+..+.+.+++++++++++.+|+++|.+++||+++++++.++++..+|+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~ 404 (651)
T PLN02736 325 GITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV 404 (651)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence 99999999999999999999999988888887777889999999999999999999999999999999999999999999
Q ss_pred ccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC
Q 009114 440 TEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519 (543)
Q Consensus 440 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~ 519 (543)
+++||+||+++.++.....+...+++|+|+|+++++|+|++++.+...+.+.+.|||+|+||++|+|||++|+.|+++|+
T Consensus 405 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~ 484 (651)
T PLN02736 405 LEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID 484 (651)
T ss_pred EEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc
Confidence 99999999987777666666678899999999999999987777777777777899999999999999999999999998
Q ss_pred CCCeeeccceEEEecCCcEEEecC
Q 009114 520 EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 520 ~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+||||+|||+|++|+||+|+|+||
T Consensus 485 ~dgw~~TGDlg~~d~dG~l~i~GR 508 (651)
T PLN02736 485 EDGWLHTGDIGLWLPGGRLKIIDR 508 (651)
T ss_pred cCCCeeccceEEEcCCCcEEEEEe
Confidence 899999999999999999999998
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-80 Score=679.04 Aligned_cols=498 Identities=37% Similarity=0.640 Sum_probs=425.8
Q ss_pred CCceEEcCCCCCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEee--------cC------
Q 009114 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRV--------DG------ 106 (543)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~--------~~------ 106 (543)
..++++++.+.+++. +|||+... .+... +.++..|++++|+++++++||++|+++++.. ++
T Consensus 25 ~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~--~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~ 99 (696)
T PLN02387 25 KKRGVPVDVGGEPGY--AIRNARFP-ELVET--PWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKL 99 (696)
T ss_pred ccceecCCCCCCCCC--ceecCccc-ccccc--CCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccc
Confidence 347788886555553 59999855 44433 3567899999999999999999999887421 22
Q ss_pred cccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCc
Q 009114 107 TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASV 186 (543)
Q Consensus 107 ~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~ 186 (543)
..++|+|+||+|+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||||++++++++.++|+++++
T Consensus 100 ~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~ 179 (696)
T PLN02387 100 HLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEV 179 (696)
T ss_pred cCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCC
Confidence 23678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCC-CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecC
Q 009114 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPS-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTS 265 (543)
Q Consensus 187 ~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TS 265 (543)
+++|++.+.++.+.++...++.++.+|++++....... .....++.+.+|+++...+...+.+...+.++|+++|+|||
T Consensus 180 ~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTS 259 (696)
T PLN02387 180 TTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTS 259 (696)
T ss_pred CEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecC
Confidence 99999988888888877777888999998764321110 01223456788999987765544444456789999999999
Q ss_pred CCCCCccEEEecHHHHHHHHHhhhcC-cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecC----C-----hHhH
Q 009114 266 GTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG----D-----NMKL 335 (543)
Q Consensus 266 GTTG~PKgv~~th~~l~~~~~~~~~~-~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~----~-----~~~l 335 (543)
||||.||||++||+|+++.+...... ..+.++|++++++|++|++++...+.+++.|+++++... + ...+
T Consensus 260 GTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~ 339 (696)
T PLN02387 260 GSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGT 339 (696)
T ss_pred CCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCc
Confidence 99999999999999999888776544 357889999999999999999988888889998887331 1 1335
Q ss_pred HHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC-----CCCCchhhHHhHHHHHHHcC
Q 009114 336 MDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG-----KNPSPMWDRLVFNKIKDKLG 410 (543)
Q Consensus 336 ~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~-----~~~~~~~d~~~~~~~~~~~g 410 (543)
++++++++||+++++|++++++.+.+...+.+.+.+++.+|+.++..|...+... ...+.+||+++|+++++.+|
T Consensus 340 ~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 419 (696)
T PLN02387 340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG 419 (696)
T ss_pred hhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhC
Confidence 6789999999999999999999999988888899999999999999888766432 23457899999999999999
Q ss_pred CcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCC
Q 009114 411 GRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQP 490 (543)
Q Consensus 411 ~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p 490 (543)
+++|.+++||+|+++++.++++..+|++++++||+||+++.++...+.+...+++|.|+|++++||+|++++++...+.|
T Consensus 420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~ 499 (696)
T PLN02387 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP 499 (696)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence 99999999999999999999999899999999999999877776666667789999999999999999889988887777
Q ss_pred CCCceEEEeCccchhhhcCChhhhhhhc--CCCC--eeeccceEEEecCCcEEEecC
Q 009114 491 CPRGEICVRGPLIFKGYYKDEIQTKEVI--DEDG--WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 491 ~~~GEi~v~g~~v~~gY~~~~~~t~~~~--~~~g--w~~TGDig~~~~~G~l~i~gR 543 (543)
.|+||||||||++|+|||++|++|+++| |++| ||||||+|++|+||+|+|+||
T Consensus 500 ~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR 556 (696)
T PLN02387 500 MPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDR 556 (696)
T ss_pred CCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEc
Confidence 7899999999999999999999999998 4456 999999999999999999999
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-77 Score=656.72 Aligned_cols=497 Identities=41% Similarity=0.693 Sum_probs=418.4
Q ss_pred CceEEcCCCCC-----CCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeH
Q 009114 42 GYSVVLPEKLD-----TGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116 (543)
Q Consensus 42 ~~~~~~~~~~~-----~~~~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty 116 (543)
+|++++.+... ++++++||+....+.+.. ..++..|++++|++.++++|+++|++.+...++..++++|+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty 79 (660)
T PLN02430 3 SFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPP---IDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTY 79 (660)
T ss_pred ceeeeecccCCCCCCCCCCCCccccccccccccC---CCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEH
Confidence 35666654333 348999999876655432 2467899999999999999999999887322344467889999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH
Q 009114 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL 196 (543)
Q Consensus 117 ~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~ 196 (543)
+|+.+++.++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+|++++++++.+++++++++++|++....
T Consensus 80 ~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~ 159 (660)
T PLN02430 80 KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKI 159 (660)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987644
Q ss_pred HHHH-hhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEE
Q 009114 197 NSLL-SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAV 275 (543)
Q Consensus 197 ~~l~-~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~ 275 (543)
.... ......+.++.+|++++............++..++|+++...+...+....+..|+|+++|+|||||||.||||+
T Consensus 160 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~ 239 (660)
T PLN02430 160 KELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVV 239 (660)
T ss_pred HHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEE
Confidence 3333 222334567888888654321111111234567889998877654433344457899999999999999999999
Q ss_pred ecHHHHHHHHHhhhcC-----cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEec
Q 009114 276 LSHGNLIASVAGATLG-----TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350 (543)
Q Consensus 276 ~th~~l~~~~~~~~~~-----~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~ 350 (543)
+||+|+++.+.+.... ..+.++|++++++|++|++++...+.++..|++++++++++..+++++++.+||++.++
T Consensus 240 lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~v 319 (660)
T PLN02430 240 LTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGV 319 (660)
T ss_pred eecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEec
Confidence 9999999877654321 24678999999999999999988777899999999998899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC---CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHH
Q 009114 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN---PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427 (543)
Q Consensus 351 P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~---~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~ 427 (543)
|++|+++++.+...+.+.+.+++.+|++++..|...+..+.. .++++|+++|+++++.+|+++|.+++||+|+++++
T Consensus 320 P~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~ 399 (660)
T PLN02430 320 PRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEI 399 (660)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHH
Confidence 999999999999999998999999999999999998876542 24789999999999999999999999999999999
Q ss_pred HHHHHHhhCCccccccChhhhccccccCCCCC-CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhh
Q 009114 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (543)
Q Consensus 428 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~g 506 (543)
.++++...+++++++||+||+++..+...+.+ ...+++|+|.+++++||+|++++++.+.+.+ +.|||+|||+++|.|
T Consensus 400 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~-~~GEi~vrg~~v~~G 478 (660)
T PLN02430 400 EEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSG 478 (660)
T ss_pred HHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCC-CcceEEecCCCcccc
Confidence 98888765578999999999987766655443 3468999999999999999888877655543 479999999999999
Q ss_pred hcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
||++|+.|+++| .||||||||+|++|+||+|+|+||
T Consensus 479 Y~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i~gR 514 (660)
T PLN02430 479 YYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDR 514 (660)
T ss_pred ccCChHHhhhhh-hccceeccceEEECCCCcEEEEEc
Confidence 999999999999 699999999999999999999998
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=650.74 Aligned_cols=486 Identities=41% Similarity=0.713 Sum_probs=407.0
Q ss_pred CCCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHH
Q 009114 51 LDTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGL 130 (543)
Q Consensus 51 ~~~~~~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L 130 (543)
..++++++||++...+.+.+. .++..|++++|++.++++|+++|++.+...++..++++++||+|+.+++.++|++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L 94 (660)
T PLN02861 18 GKPSAGPVYRSIYAKDGLLDL---PADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAI 94 (660)
T ss_pred CCCCCCCcccccccccccccC---CCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHH
Confidence 346678999999877776542 35789999999999999999999988633244446778999999999999999999
Q ss_pred HHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCC-Ce
Q 009114 131 IYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-TV 209 (543)
Q Consensus 131 ~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-~l 209 (543)
.++|+++||+|+|+++|++||+++++||+++|+++|||+++++.+++.++|++++++++|++.+..+.+.......+ .+
T Consensus 95 ~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l 174 (660)
T PLN02861 95 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNL 174 (660)
T ss_pred HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998877766665554443 57
Q ss_pred eEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh
Q 009114 210 RLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT 289 (543)
Q Consensus 210 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~ 289 (543)
+.+|.+++............++...+|+++...+... ....+..++|+++|+|||||||.||||++||+|+++.+....
T Consensus 175 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~ 253 (660)
T PLN02861 175 KTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTD 253 (660)
T ss_pred EEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHH
Confidence 8888876532111111111234567888887654321 223345689999999999999999999999999998876654
Q ss_pred cCcc-----cCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHH
Q 009114 290 LGTK-----FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (543)
Q Consensus 290 ~~~~-----~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~ 364 (543)
..+. +.++|++++++|++|++++...+.+++.|++++++++++..++++|++++||+++++|++|+++++.+...
T Consensus 254 ~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~ 333 (660)
T PLN02861 254 HLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQK 333 (660)
T ss_pred hccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHH
Confidence 4332 46889999999999999998777789999999998889999999999999999999999999999999999
Q ss_pred HhccCchHHHHHHHHHHHHHHHHhcCCCC---CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC-Cccc
Q 009114 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNP---SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVT 440 (543)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~k~~~~~~~~~~---~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~i~ 440 (543)
+...+.+++.+|++|+..+...+..+... .+.+|+++|+++|+.+|+++|.+++||+|+++++.++++ .++ ++++
T Consensus 334 ~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~~~~-~~~~~~l~ 412 (660)
T PLN02861 334 ISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLR-VTSCSVLS 412 (660)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHH-HHcCCCee
Confidence 99999999999999999998887765322 367899999999999999999999999999999877655 455 4799
Q ss_pred cccChhhhccccccCCCCC-CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC
Q 009114 441 EGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519 (543)
Q Consensus 441 ~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~ 519 (543)
++||+||+++.++.....+ ...+++|+|+|++++||+|++++++.... +.+.||||||||++|.|||++|++|+++|
T Consensus 413 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~-~~~~GEi~vrGp~v~~GY~~~pe~T~~~f- 490 (660)
T PLN02861 413 QGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALS-DVPRGEICLRGNTLFSGYHKRQDLTEEVL- 490 (660)
T ss_pred EecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCC-CCCceeEEEcCCcccccccCCHHHHHhhh-
Confidence 9999999987665443332 35689999999999999997665543222 33589999999999999999999999999
Q ss_pred CCCeeeccceEEEecCCcEEEecC
Q 009114 520 EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 520 ~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.||||||||+|++|+||+|+|+||
T Consensus 491 ~dGw~~TGDlg~~d~dG~l~i~GR 514 (660)
T PLN02861 491 IDGWFHTGDIGEWQPNGAMKIIDR 514 (660)
T ss_pred hccCcccCceEEECCCCcEEEEec
Confidence 589999999999999999999999
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-76 Score=646.31 Aligned_cols=485 Identities=38% Similarity=0.683 Sum_probs=398.9
Q ss_pred CCCCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHH
Q 009114 52 DTGKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131 (543)
Q Consensus 52 ~~~~~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~ 131 (543)
.+.++++||++.....+.. +.+...|++++|++.++++||++|++++...++..++++++||+|+.++++++|++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~---~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~ 97 (666)
T PLN02614 21 RPSVGPVYRSIFAKDGFPN---PIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLR 97 (666)
T ss_pred CCCCCCcccCcccccccCC---CCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHH
Confidence 4677899999875555431 2456789999999999999999999875211233345788999999999999999999
Q ss_pred HcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccC-CCCee
Q 009114 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVR 210 (543)
Q Consensus 132 ~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~l~ 210 (543)
++|+++||+|+|+++|++||+++++||+++|+++|||+++++++++.+++++++++++|++.+....+...... .+.++
T Consensus 98 ~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~ 177 (666)
T PLN02614 98 SVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMK 177 (666)
T ss_pred HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999999999999999999999988766555443322 23467
Q ss_pred EEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc
Q 009114 211 LIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290 (543)
Q Consensus 211 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~ 290 (543)
.++.+++............++.+.+|+++...+.....+.....++|+++|+|||||||.||||++||+|+++.+.....
T Consensus 178 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~ 257 (666)
T PLN02614 178 TVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIR 257 (666)
T ss_pred EEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence 77777542211100111124456789888765433222233456899999999999999999999999999987765443
Q ss_pred C-----cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHH
Q 009114 291 G-----TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAV 365 (543)
Q Consensus 291 ~-----~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~ 365 (543)
. ..+.++|++++++|++|++++...+.+++.|++++++++++..+++++++++||+++++|++|+++++.+...+
T Consensus 258 ~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~ 337 (666)
T PLN02614 258 LLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKL 337 (666)
T ss_pred hccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHH
Confidence 3 25788999999999999999987667788999999988899999999999999999999999999999888888
Q ss_pred hccCchHHHHHHHHHHHHHHHHhcCCCC---CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccc
Q 009114 366 RTSGGLRERLFNAAYNAKKQAMLSGKNP---SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEG 442 (543)
Q Consensus 366 ~~~~~~~~~~~~~a~~~k~~~~~~~~~~---~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~ 442 (543)
.+.+.+++++|.+|+..+...++.+... .+++|+++|+++++.+|+++|.+++||+|+++++.++++...+++++++
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~ 417 (666)
T PLN02614 338 SDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQG 417 (666)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHhcCCCEEee
Confidence 8888899999999999887766654322 3688999999999999999999999999999987665554435899999
Q ss_pred cChhhhccccccCCCCC-CCCCCcCCCCCCeEEEEeecCCCC--CCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC
Q 009114 443 YGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMN--YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID 519 (543)
Q Consensus 443 YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~evkivd~~~~~--~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~ 519 (543)
||+||+++..+...+.+ ...+++|+|+|++++||+|+++++ .++.+ +.||||||||++|+|||++|+.|+++|
T Consensus 418 YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g---~~GEl~vrGp~v~~GY~~~pe~T~~~f- 493 (666)
T PLN02614 418 YGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAST---PRGEICIRGKTLFSGYYKREDLTKEVL- 493 (666)
T ss_pred CchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCC---CCceEEEcCCcccccccCCHHHhhhhh-
Confidence 99999986655444433 356899999999999999976653 33433 489999999999999999999999999
Q ss_pred CCCeeeccceEEEecCCcEEEecC
Q 009114 520 EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 520 ~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.||||||||+|++|+||+|+|+||
T Consensus 494 ~dGw~~TGDlg~~d~dG~l~i~gR 517 (666)
T PLN02614 494 IDGWLHTGDVGEWQPNGSMKIIDR 517 (666)
T ss_pred ccCCcccceEEEEcCCCCEEEEEc
Confidence 599999999999999999999999
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-75 Score=640.71 Aligned_cols=492 Identities=34% Similarity=0.577 Sum_probs=411.1
Q ss_pred CCceEEcCCCCCCCCCccccCCCCCcccccc-CCCCCCCCCHHHHHHHHHHhcCCCccEEEEEe----------ecCc--
Q 009114 41 QGYSVVLPEKLDTGKWNVYRSSRSPLKLVSR-FPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVR----------VDGT-- 107 (543)
Q Consensus 41 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~-~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~----------~~~~-- 107 (543)
..+++++++..++.++++||++...+..... ..+.+...|++++|++.++++||++|++++.. .++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~ 109 (700)
T PTZ00216 30 GPQNVPVPGTETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKER 109 (700)
T ss_pred CCcceecCCCCCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccc
Confidence 4478999998888899999997644321111 11234678999999999999999999999721 0121
Q ss_pred ------ccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHH
Q 009114 108 ------VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV 181 (543)
Q Consensus 108 ------~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il 181 (543)
.++++++||+||.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+|++++++++.+++
T Consensus 110 ~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il 189 (700)
T PTZ00216 110 TMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYAL 189 (700)
T ss_pred cccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhh
Confidence 13578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCccEEEecCcCHHHHHhhccC--CCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCc--cCCC-CCCCCCCC
Q 009114 182 NHASVQAVFCVPQTLNSLLSCLSE--VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGR--SNLQ-PFSPPKPD 256 (543)
Q Consensus 182 ~~~~~~~vi~~~~~~~~l~~~~~~--~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~~~~~~~ 256 (543)
++++++++|++......+...... .+.. .+|++++.... ....++.+++|++++..+. .... ...+..++
T Consensus 190 ~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~-~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (700)
T PTZ00216 190 RETECKAIVCNGKNVPNLLRLMKSGGMPNT-TIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENND 264 (700)
T ss_pred hccCccEEEECHHHHHHHHHhhhhccCCce-EEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcc
Confidence 999999999998776666554432 2333 45666543221 1223557889999987652 1111 12345689
Q ss_pred CeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCc-----ccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCC
Q 009114 257 DVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT-----KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGD 331 (543)
Q Consensus 257 d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~ 331 (543)
|+++|+|||||||.||||++||+|+++.+.+....+ .+.++|++++++|++|++++......++.|+.+++ ++
T Consensus 265 d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~--~~ 342 (700)
T PTZ00216 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GS 342 (700)
T ss_pred cEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE--CC
Confidence 999999999999999999999999998877654332 24788999999999999999877777888988877 46
Q ss_pred hHhHHH-------HHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHH
Q 009114 332 NMKLMD-------DMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNK 404 (543)
Q Consensus 332 ~~~l~~-------~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~ 404 (543)
+..+.+ ++++++||+++++|++|+++++.+...+...+.+++++|++|+..+...+..+. .+++||+++|++
T Consensus 343 ~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~v~~~ 421 (700)
T PTZ00216 343 PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK-DTPYWNEKVFSA 421 (700)
T ss_pred HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC-CCchHHHHHHHH
Confidence 666665 789999999999999999999999999999999999999999999988877653 457899999999
Q ss_pred HHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCC
Q 009114 405 IKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484 (543)
Q Consensus 405 ~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~ 484 (543)
+++.+|+++|.+++||+++++++.++++..++ +++++||+||+++.++.....+...+++|+|+++++++|+|+++..
T Consensus 422 ~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~- 499 (700)
T PTZ00216 422 PRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYK- 499 (700)
T ss_pred HHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhc-
Confidence 99999999999999999999999999998888 9999999999987776666666678999999999999999966532
Q ss_pred CCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 485 ~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
..+.|.+.|||||+|++||+|||++|++|+++|++||||||||+|++|+||+|+|+||
T Consensus 500 -~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR 557 (700)
T PTZ00216 500 -HTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGR 557 (700)
T ss_pred -cCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEe
Confidence 2334446899999999999999999999999999999999999999999999999998
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=516.92 Aligned_cols=379 Identities=33% Similarity=0.500 Sum_probs=320.3
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEE
Q 009114 112 KWMTYGEAGTARTEVGSGLIYHG--ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAV 189 (543)
Q Consensus 112 ~~~Ty~el~~~~~~la~~L~~~g--~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~v 189 (543)
+.+||+|+.+++.++|++|.++| +++||+|+|++||++++.++++||...|++..|++|.+.+.++.+.+++++++++
T Consensus 44 ~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kii 123 (537)
T KOG1176|consen 44 RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLI 123 (537)
T ss_pred cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEE
Confidence 45999999999999999999876 7999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee-HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCC
Q 009114 190 FCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT-YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268 (543)
Q Consensus 190 i~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTT 268 (543)
|++....+++.+....+. ..++++........ ......... +.++...+.... ..+..++|++.|+||||||
T Consensus 124 f~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTT 196 (537)
T KOG1176|consen 124 FVDEDFYDKISEATSKLA--LKIIVLTGDEGVIS---ISDLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTT 196 (537)
T ss_pred EEcCchHHHHHHHHhhcC--CceEEEecccCccc---cccccccccchhhccccCCCcc--cccCCCCCeEEEecCCCCC
Confidence 999999999887765554 33444443211000 000111122 555554443332 5566789999999999999
Q ss_pred CCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH-HHHhCcEEEEec-CChHhHHHHHHhhCCeE
Q 009114 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQ-GDNMKLMDDMAALRPTV 346 (543)
Q Consensus 269 G~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~-~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~ 346 (543)
|.||||++||+|++...........+...|++++.+|++|++|+...+. .+..|+++++.+ +++..+++.++++|+|+
T Consensus 197 g~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~ 276 (537)
T KOG1176|consen 197 GLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTH 276 (537)
T ss_pred CCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEE
Confidence 9999999999999998877776677778999999999999999999877 566666666666 69999999999999999
Q ss_pred EEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHH
Q 009114 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPD 426 (543)
Q Consensus 347 ~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~ 426 (543)
++.+|.+++.+.+.-. ......+++|.+.+||+|++++
T Consensus 277 ~~~vP~~~~~l~~~p~------------------------------------------~~~~~l~sl~~v~~gga~~~~~ 314 (537)
T KOG1176|consen 277 LFLVPPVLNMLAKSPI------------------------------------------VKKYDLSSLRSVLSGGAPLSPA 314 (537)
T ss_pred EEcChHHHHHHhcCCc------------------------------------------cCcccCCccEEEEecCCCCCHH
Confidence 9999999999876310 0011126999999999999999
Q ss_pred HHHHHHHhhC-CccccccChhhhccccccCCCCCC-CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccch
Q 009114 427 VLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDN-LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIF 504 (543)
Q Consensus 427 ~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~-~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~ 504 (543)
+.+.+++.++ ..+.++||+||+++.++.+...+. +.+++|.++++++.++.+ +++..++.++ .||||+||++++
T Consensus 315 ~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~l~~~~---~GEI~vrg~~im 390 (537)
T KOG1176|consen 315 TLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETGVSLGPNQ---TGEICVRGPQVM 390 (537)
T ss_pred HHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CCCCCCCCCC---ceEEEEECcccc
Confidence 9999999998 889999999999988888776664 889999999988877777 7777777776 899999999999
Q ss_pred hhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 505 KGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 505 ~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+|||+||++|+++|+++|||||||+|++|+||+|+|+||
T Consensus 391 kGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR 429 (537)
T KOG1176|consen 391 KGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDR 429 (537)
T ss_pred hhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecc
Confidence 999999999999998889999999999999999999999
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=486.56 Aligned_cols=405 Identities=23% Similarity=0.353 Sum_probs=347.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++++..+++.||+.++.... .+ .++||+|+.+.++.+|++|.++|+++||+|+|+.||+.+|+..++
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~l 120 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQL 120 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHH
Confidence 56899999999999999999997751 22 348999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC-----HHHHHhhcc-------------CCCCeeEEEEeCCC
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLS-------------EVPTVRLIVVIGGI 218 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~-------------~~~~l~~ii~~~~~ 218 (543)
||+++|.+.|++||.+..++++|.|++.+++++|..+.. .+.++++.+ .+|.+..+|..+++
T Consensus 121 A~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed 200 (596)
T KOG1177|consen 121 ACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED 200 (596)
T ss_pred HHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC
Confidence 999999999999999999999999999999999997643 233444433 35678888888744
Q ss_pred CCCCCCCCcCCCceeeeHHHHHhcCccCCC-----CCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcc
Q 009114 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQ-----PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~ 293 (543)
... ...+.++|++..+..... -.....|||++.|.|||||||.|||+.+||-|++++........+
T Consensus 201 ~~~---------~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g 271 (596)
T KOG1177|consen 201 HPL---------PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAG 271 (596)
T ss_pred CcC---------CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhC
Confidence 322 134678888766554221 122367899999999999999999999999999999988888889
Q ss_pred cCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCc
Q 009114 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (543)
Q Consensus 294 ~~~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~ 370 (543)
+.++++++...||+|++|... .+.++..|++++|+. ++++..++.|+++|+|.++++|++|..+++.-..
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~------- 344 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQK------- 344 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhh-------
Confidence 999999999999999999666 788999999999976 8999999999999999999999999988753111
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCC-ccccccChhhhc
Q 009114 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETS 449 (543)
Q Consensus 371 ~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~i~~~YG~TE~~ 449 (543)
.+.-.+++|-++.||+|+|+++++.+...... .+..+||+|||+
T Consensus 345 -----------------------------------~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts 389 (596)
T KOG1177|consen 345 -----------------------------------QQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETS 389 (596)
T ss_pred -----------------------------------ccCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccC
Confidence 11111689999999999999999999986654 378899999999
Q ss_pred cccccCCCCC---CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeec
Q 009114 450 CLISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (543)
Q Consensus 450 ~~~~~~~~~~---~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~T 526 (543)
...+...+.| ....+||..+++.|.+|+| .++...+.+. .||||+||++++.|||+++++|+++.+.|.||+|
T Consensus 390 ~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~---~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~T 465 (596)
T KOG1177|consen 390 PVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGT---KGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDT 465 (596)
T ss_pred cceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCC---CceEEEEechhheeecCCcccchhhcccccceec
Confidence 8877766655 4457899999999999999 7777777776 6999999999999999999999999999999999
Q ss_pred cceEEEecCCcEEEecC
Q 009114 527 GDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 527 GDig~~~~~G~l~i~gR 543 (543)
||+|.+|+||+++|+||
T Consensus 466 GDi~~m~enG~i~iVGR 482 (596)
T KOG1177|consen 466 GDIAVMDENGTIEIVGR 482 (596)
T ss_pred CceEEEcCCCcEEEEEc
Confidence 99999999999999998
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=519.12 Aligned_cols=404 Identities=30% Similarity=0.465 Sum_probs=335.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...++.+++.+.++++|+++++.+. +... .+||+||.++++++|++|++.|+++||+|+|+++|++|++++++
T Consensus 9 ~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~ 81 (534)
T COG0318 9 AELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFL 81 (534)
T ss_pred ccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4589999999999999999999875 3321 59999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++||++.+..+++.++++++++++++++.+..+.+.......+....++......... . .++
T Consensus 82 a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~ 151 (534)
T COG0318 82 AALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRL---------P-ITL 151 (534)
T ss_pred HHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccc---------c-ccH
Confidence 999999999999999999999999999999999999885555555443333333233222211000 0 345
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcc--cCCCcEEEEeCChHHHHHHHH
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK--FYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~--~~~~d~~l~~lpl~h~~~~~~ 314 (543)
+++..............+++|+++|+|||||||.||||++||+|++.+.......+. ++++|++++.+|++|++|+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~ 231 (534)
T COG0318 152 EALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIV 231 (534)
T ss_pred HHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHH
Confidence 566433222222222267999999999999999999999999999999888877777 899999999999999999998
Q ss_pred HHH-HHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 315 QVM-TVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 315 ~~~-~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
.+. .++.|+++++.+ +++..++..+.++++|+++++|+++..+++......
T Consensus 232 ~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~------------------------- 286 (534)
T COG0318 232 GLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD------------------------- 286 (534)
T ss_pred HHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-------------------------
Confidence 665 599999999987 799999999999999999999999999866311100
Q ss_pred CCCCchhhHHhHHHHHHHcCC-cEEEEEEcCCCCCHHHHHHHHHhhC-CccccccChhhhccccccCCCCC--CCCCCcC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGG-RVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGD--NLSGHVG 466 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~-~lr~i~~gga~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG 466 (543)
.... ++|++++||+++++++++.+++.|+ ..++++||+||+++.++.....+ ...+++|
T Consensus 287 -----------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 349 (534)
T COG0318 287 -----------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVG 349 (534)
T ss_pred -----------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCccc
Confidence 0002 4999999999999999999999997 46999999999998777776665 4678889
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.|+|+++++|+|.++....+ + +.||||||||+|+.|||++|+.|+++|+.+|||+|||+|++|+||+++|+||
T Consensus 350 ~~~pg~~v~Ivd~~~~~~~p-g---~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR 422 (534)
T COG0318 350 RPLPGVEVRIVDPDGGEVLP-G---EVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGR 422 (534)
T ss_pred ccCCCcEEEEEeCCCCccCC-C---CceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEec
Confidence 99999999999966554444 3 3899999999999999999999999997679999999999999999999998
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=538.70 Aligned_cols=433 Identities=19% Similarity=0.321 Sum_probs=358.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcc
Q 009114 67 KLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFV 146 (543)
Q Consensus 67 ~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~ 146 (543)
++...|++.+...|+.++|++.++++|+++|++.+ . ..++++|+||+|+.+++.++|++|.++|+++||+|+|+++
T Consensus 415 ~~~~~~~~~~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~ 490 (1452)
T PTZ00297 415 NLPREYNPLAGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCE 490 (1452)
T ss_pred hhhhcCCCcccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 34455788889999999999999999999999754 1 1245789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCC-CCCC
Q 009114 147 NRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ-IPSL 225 (543)
Q Consensus 147 n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~-~~~~ 225 (543)
|++||+++++||+++|+++||+|++ .+++.|+++++++++|||+.+.++++.++.. +.++.||++++..+. ....
T Consensus 491 N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~ 566 (1452)
T PTZ00297 491 ASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYDEDDHAV 566 (1452)
T ss_pred CCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcccccccc
Confidence 9999999999999999999999864 6799999999999999999888887776543 368999998642111 0011
Q ss_pred CcCCCceeeeHHHHHhcCccCCCC-CCCCCCCCeEEEEe---cCCCCCCccEEEecHHHHHHHHHhhhcCc---ccCCCc
Q 009114 226 PITTGVQILTYSNLLSQGRSNLQP-FSPPKPDDVATICY---TSGTTGTPKGAVLSHGNLIASVAGATLGT---KFYPSD 298 (543)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~d~~~i~~---TSGTTG~PKgv~~th~~l~~~~~~~~~~~---~~~~~d 298 (543)
....++.+++|+++++.+.....+ ....+++|+++|+| ||||||.||||++||+|+++.+....... ...++|
T Consensus 567 ~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D 646 (1452)
T PTZ00297 567 ARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKH 646 (1452)
T ss_pred cccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCC
Confidence 112245678899999887532221 23347899999996 99999999999999999999988765422 356789
Q ss_pred EEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHH
Q 009114 299 VYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (543)
Q Consensus 299 ~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 378 (543)
++++++||+|++++...+.+++.|+++++ +++..++++|+++|||++++||++|+++++.+..+....+.+++++|++
T Consensus 647 ~~Ls~LPLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~ 724 (1452)
T PTZ00297 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFER 724 (1452)
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999999998888888999999986 5799999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCC--CCCHHHHHHHHHhhCCccccccChhhhccccccCC
Q 009114 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGAS--PLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD 456 (543)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga--~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 456 (543)
|+..|......+...++++|+++|+|+|+.+|+++|++++||+ +++..+.. +++++.+||+||+. +.+.
T Consensus 725 A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~ 795 (1452)
T PTZ00297 725 AFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPS 795 (1452)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecC
Confidence 9999988777676666899999999999999999999999984 66654444 57788999999953 3344
Q ss_pred CCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCC
Q 009114 457 EGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536 (543)
Q Consensus 457 ~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G 536 (543)
+.+... .|.|+|++|+||.|++++++. + ++|||++++ ++||++|++.+ +||+ +||
T Consensus 796 ~~~~~~--~G~PlpgvEvKI~~~~E~~~~----~-~~GEIlvr~-------~kdpe~T~e~~--~gW~---------~dG 850 (1452)
T PTZ00297 796 EGVFCV--DGTPAPSLQVDLEPFDEPSDG----A-GIGQLVLAK-------KGEPRRTLPIA--AQWK---------RDR 850 (1452)
T ss_pred CCCccc--CCeecCceEEEEcccccccCC----C-CCCeEEEEE-------CCChHHHHHhh--CcCc---------cCC
Confidence 444433 499999999999998776542 1 379999964 58999999854 6786 589
Q ss_pred cEEEecC
Q 009114 537 RLKIIDR 543 (543)
Q Consensus 537 ~l~i~gR 543 (543)
+|+|+||
T Consensus 851 ~L~IidR 857 (1452)
T PTZ00297 851 TLRLLGP 857 (1452)
T ss_pred eEEEEec
Confidence 9999998
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=506.05 Aligned_cols=404 Identities=23% Similarity=0.354 Sum_probs=321.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...|+.++|++.++++||++|+... + ..+.++++||+||.++++++|++|.+.|+++||+|+|+++|++||++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~ 111 (614)
T PRK08180 36 DYPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLA 111 (614)
T ss_pred CcCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence 34679999999999999999999764 2 2234678999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCC-----HHHHHHHHHhcCccEEEecCcC-HHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCC
Q 009114 156 HACSAYSFISVPLYDTLG-----PDAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~-----~~~l~~il~~~~~~~vi~~~~~-~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 229 (543)
+||+++|+++||+++.++ .+++.+++++++++++|++... .......... ...+ ++..+....
T Consensus 112 lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~-~i~~~~~~~--------- 180 (614)
T PRK08180 112 LAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP-ADVE-VVAVRGAVP--------- 180 (614)
T ss_pred HHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc-CCce-EEEecCCCC---------
Confidence 999999999999999998 7999999999999999997541 2222211111 1222 333322110
Q ss_pred CceeeeHHHHHhcCccCC--CCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccC--CCcEEEEeCC
Q 009114 230 GVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY--PSDVYISYLP 305 (543)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~--~~d~~l~~lp 305 (543)
.....+|+++........ .......++|+++|+|||||||.||||++||+|+.+.+......+.+. .+|++++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lP 260 (614)
T PRK08180 181 GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLP 260 (614)
T ss_pred CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecc
Confidence 011345777654321111 112234679999999999999999999999999998877665555543 5689999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHH
Q 009114 306 LAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (543)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a 379 (543)
++|++++.. .+.+++.|+++++.++ +...+++.++++++|+++++|++|..|.+.+...
T Consensus 261 l~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~--------------- 325 (614)
T PRK08180 261 WNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERD--------------- 325 (614)
T ss_pred hHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhc---------------
Confidence 999999865 4568999999998752 3356788999999999999999999987743211
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh----hC--CccccccChhhhccccc
Q 009114 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG--GRVTEGYGMTETSCLIS 453 (543)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~----~~--~~i~~~YG~TE~~~~~~ 453 (543)
...++..++++|.+++||+++++++.+++++. +| ++++++||+||++++++
T Consensus 326 -----------------------~~~~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~ 382 (614)
T PRK08180 326 -----------------------AALRRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSAT 382 (614)
T ss_pred -----------------------hhhhhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceE
Confidence 01112233689999999999999999999875 33 67999999999987666
Q ss_pred cCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEE-
Q 009114 454 QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMW- 532 (543)
Q Consensus 454 ~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~- 532 (543)
.........+++|+|+++++++|+|. +. .|||+|+|+++|.|||++|+.|++.|+.||||+|||+|++
T Consensus 383 ~~~~~~~~~~svG~p~pg~~v~i~d~--------~~---~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~ 451 (614)
T PRK08180 383 FTTGPLSRAGNIGLPAPGCEVKLVPV--------GG---KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFV 451 (614)
T ss_pred ecccccCCCCcccCccCCcEEEEecC--------CC---CcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEec
Confidence 55444566789999999999999983 22 6999999999999999999999999988999999999999
Q ss_pred ---ecCCcEEEecC
Q 009114 533 ---IPGGRLKIIDR 543 (543)
Q Consensus 533 ---~~~G~l~i~gR 543 (543)
|+||+|+|+||
T Consensus 452 ~~~d~~g~l~i~GR 465 (614)
T PRK08180 452 DPADPERGLMFDGR 465 (614)
T ss_pred CCcCCCCceEEecc
Confidence 46899999998
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-59 Score=508.29 Aligned_cols=425 Identities=22% Similarity=0.325 Sum_probs=328.7
Q ss_pred CccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCC
Q 009114 56 WNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGI 135 (543)
Q Consensus 56 ~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~ 135 (543)
..++|+...+.-....+++.+...|+.++|++.++++||++|+.+. +...+.++.+||+||.++++++|++|.+.|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv 102 (624)
T PRK12582 26 ISVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGL 102 (624)
T ss_pred eEEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCC
Confidence 4566665544333333666677899999999999999999999765 3323456789999999999999999999999
Q ss_pred CCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCH-----HHHHHHHHhcCccEEEecCcC-HHHHHhhccCCCCe
Q 009114 136 SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP-----DAVKYIVNHASVQAVFCVPQT-LNSLLSCLSEVPTV 209 (543)
Q Consensus 136 ~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~-----~~l~~il~~~~~~~vi~~~~~-~~~l~~~~~~~~~l 209 (543)
++||+|+++++|++||+++++||+++|++++|+++.++. +++.+++++++++++|++... .......... ..+
T Consensus 103 ~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~ 181 (624)
T PRK12582 103 DPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL-LDV 181 (624)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh-cCc
Confidence 999999999999999999999999999999999999875 899999999999999997642 2222222211 123
Q ss_pred eEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCC--CCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHh
Q 009114 210 RLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287 (543)
Q Consensus 210 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~ 287 (543)
+ ++.++.... ......++++........ .......++|+++|+|||||||.||||++||+++++.+..
T Consensus 182 ~-~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~ 251 (624)
T PRK12582 182 T-VVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAM 251 (624)
T ss_pred e-EEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHH
Confidence 3 333332110 112345666654322111 1112346789999999999999999999999999887765
Q ss_pred hhcCcccCC---CcEEEEeCChHHHHHHHHH-HHHHHhCcEEEEecC--C---hHhHHHHHHhhCCeEEEechHHHHHHH
Q 009114 288 ATLGTKFYP---SDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQG--D---NMKLMDDMAALRPTVFCSVPRLYNRIY 358 (543)
Q Consensus 288 ~~~~~~~~~---~d~~l~~lpl~h~~~~~~~-~~~l~~G~~i~~~~~--~---~~~l~~~i~~~k~t~~~~~P~~l~~l~ 358 (543)
......... .|++++++|++|++++... +.+++.|+++++.++ + ...+++.++++++|+++++|+++..+.
T Consensus 252 ~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~ 331 (624)
T PRK12582 252 QEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLA 331 (624)
T ss_pred HHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHH
Confidence 544333333 5899999999999998774 467889999988652 2 345678889999999999999999886
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh---
Q 009114 359 AGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--- 435 (543)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~--- 435 (543)
+.+... + ..+....+++|.+++||+++++++.+++++.+
T Consensus 332 ~~~~~~----~----------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~ 373 (624)
T PRK12582 332 EAMEKD----D----------------------------------ALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRT 373 (624)
T ss_pred HHHhhC----H----------------------------------HHHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhh
Confidence 643211 0 01111225899999999999999999998863
Q ss_pred ---CCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChh
Q 009114 436 ---GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (543)
Q Consensus 436 ---~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~ 512 (543)
+++++++||+||++.++..........+++|+|+|+++++|++ .|+ .|||+|+|++++.|||++|+
T Consensus 374 ~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--------~G~---~GEl~vrg~~v~~GY~~~p~ 442 (624)
T PRK12582 374 TGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--------VGD---KYEVRVKGPNVTPGYHKDPE 442 (624)
T ss_pred cCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc--------CCC---ceEEEEECCcccccccCCcc
Confidence 3679999999999876654444445678999999999999975 233 79999999999999999999
Q ss_pred hhhhhcCCCCeeeccceEEE-e---cCCcEEEecC
Q 009114 513 QTKEVIDEDGWFHTGDIGMW-I---PGGRLKIIDR 543 (543)
Q Consensus 513 ~t~~~~~~~gw~~TGDig~~-~---~~G~l~i~gR 543 (543)
.|++.|+.||||+|||+|++ | ++|+|+|+||
T Consensus 443 ~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR 477 (624)
T PRK12582 443 LTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGR 477 (624)
T ss_pred chhhhcCccCCccccceEEecCCcCCCCceEEecc
Confidence 99999988999999999999 4 5699999998
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-58 Score=503.52 Aligned_cols=426 Identities=16% Similarity=0.169 Sum_probs=327.2
Q ss_pred CCCCCCCHHHHHHHHHHh--cCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhH
Q 009114 74 DHPEIGTTHDNFVRAVDT--FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW 151 (543)
Q Consensus 74 ~~~~~~tl~~~~~~~~~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~ 151 (543)
+....++.++++++.++. +||++|+.+. ....+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++||
T Consensus 54 ~~~~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~ 130 (647)
T PTZ00237 54 KGGELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEP 130 (647)
T ss_pred CCCeeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 455778899999998765 7999999774 22222346799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCc---------CHHHHHhhccCCC-CeeEEEEeCCCC--
Q 009114 152 LIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ---------TLNSLLSCLSEVP-TVRLIVVIGGID-- 219 (543)
Q Consensus 152 ~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~---------~~~~l~~~~~~~~-~l~~ii~~~~~~-- 219 (543)
+++++||+++|++++|+++.++++++.++|+++++++||+++. ..+.+.++..... ..+.++.+....
T Consensus 131 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 210 (647)
T PTZ00237 131 LIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDIT 210 (647)
T ss_pred HHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcc
Confidence 9999999999999999999999999999999999999999752 2233333322111 123444432111
Q ss_pred -CC-CCCC-CcCCCceeeeHHHHHhcCcc----CCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHH-HHHHHHhhhcC
Q 009114 220 -DQ-IPSL-PITTGVQILTYSNLLSQGRS----NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-LIASVAGATLG 291 (543)
Q Consensus 220 -~~-~~~~-~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~-l~~~~~~~~~~ 291 (543)
.. .... ..........|++++..... ...+.....++|+++|+|||||||.||||+++|++ +++........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~ 290 (647)
T PTZ00237 211 SESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSI 290 (647)
T ss_pred cccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHh
Confidence 00 0000 00000123567777653211 11223345789999999999999999999999999 44433333344
Q ss_pred cccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCC-------hHhHHHHHHhhCCeEEEechHHHHHHHHHHHHH
Q 009114 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGD-------NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364 (543)
Q Consensus 292 ~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~-------~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~ 364 (543)
.....+|+++++.|++|+.+....+.+++.|+++++++++ +..+++.++++++|+++++|+++..+.+.....
T Consensus 291 ~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~ 370 (647)
T PTZ00237 291 IEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEA 370 (647)
T ss_pred cCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccc
Confidence 5677889999999999997766678899999999998753 577999999999999999999999886521000
Q ss_pred HhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccC
Q 009114 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYG 444 (543)
Q Consensus 365 ~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG 444 (543)
. .. .+....+++|.+++||+|+++++.+++++.+|+++++.||
T Consensus 371 ~--------------------------~~-----------~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG 413 (647)
T PTZ00237 371 T--------------------------II-----------RSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYG 413 (647)
T ss_pred c--------------------------cc-----------ccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeec
Confidence 0 00 0000115899999999999999999999999999999999
Q ss_pred hhhhccccccCCCCC-CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCc---cchhhhcCChhhhhhhcCC
Q 009114 445 MTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDE 520 (543)
Q Consensus 445 ~TE~~~~~~~~~~~~-~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~---~v~~gY~~~~~~t~~~~~~ 520 (543)
+||+++.++...+.. ...+++|.|+|+++++|+| ++++.++.++ .|||+++|| +++.|||+|++.|++.|+.
T Consensus 414 ~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~ge---~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~ 489 (647)
T PTZ00237 414 QTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVNE---IGEVAFKLPMPPSFATTFYKNDEKFKQLFSK 489 (647)
T ss_pred hHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCCC---ceEEEEeccCCchhhCceeCCHHHHHHHHhC
Confidence 999986554433322 3348999999999999999 5777776665 899999986 8999999999999998854
Q ss_pred -CCeeeccceEEEecCCcEEEecC
Q 009114 521 -DGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 521 -~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+|||+|||+|++|+||+++|+||
T Consensus 490 ~~g~~~TGDlg~~d~dG~l~i~GR 513 (647)
T PTZ00237 490 FPGYYNSGDLGFKDENGYYTIVSR 513 (647)
T ss_pred CCCEEECCcEEEECCCCeEEEEec
Confidence 79999999999999999999999
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=491.90 Aligned_cols=405 Identities=22% Similarity=0.264 Sum_probs=323.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++||++++... + +.+||+||.+++.++|++|.++|+++||+|+|+++|+++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l 75 (563)
T PLN02860 5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL 75 (563)
T ss_pred hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4468999999999999999998543 2 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhc-cCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
||+++|++++||++.++.+++.++++++++++++++........... ...+.++.++.+++...... .....++.
T Consensus 76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~ 151 (563)
T PLN02860 76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVF----IFLNSFLT 151 (563)
T ss_pred HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccc----cchhhccc
Confidence 99999999999999999999999999999999999876533222221 23445555555543211000 00001122
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
++++...+...........++++++|+|||||||.||||+++|++++.........+.+.++|++++++|++|++++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~ 231 (563)
T PLN02860 152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSA 231 (563)
T ss_pred cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHH
Confidence 22222211111111123467899999999999999999999999998877666556778899999999999999999888
Q ss_pred HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 009114 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (543)
Q Consensus 316 ~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (543)
+.++..|+++++.+ +++..+++.++++++|++.++|.++..+.+.....
T Consensus 232 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------------------------ 281 (563)
T PLN02860 232 LAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKS------------------------------ 281 (563)
T ss_pred HHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhh------------------------------
Confidence 88999999998876 79999999999999999999999999887632100
Q ss_pred chhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCC--------------
Q 009114 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-------------- 459 (543)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~-------------- 459 (543)
......+++|.+++||+++++++.+.+++.| ++++++.||+||+++.++.....+
T Consensus 282 ----------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (563)
T PLN02860 282 ----------MTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVN 351 (563)
T ss_pred ----------hccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhc
Confidence 0001125899999999999999999999988 789999999999876544322111
Q ss_pred ---------CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceE
Q 009114 460 ---------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530 (543)
Q Consensus 460 ---------~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig 530 (543)
....++|+|+++++++|++.+ .+ +.|||+|+|++++.|||++|+.|++.|+.+|||+|||+|
T Consensus 352 ~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g---~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~ 422 (563)
T PLN02860 352 QTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SS---RVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIG 422 (563)
T ss_pred ccccccccccCCcccCCccCCcEEEEecCC------CC---ceeEEEEecCcccccccCCccccchhccCCCeEEccceE
Confidence 112378999999999999833 23 489999999999999999999999999889999999999
Q ss_pred EEecCCcEEEecC
Q 009114 531 MWIPGGRLKIIDR 543 (543)
Q Consensus 531 ~~~~~G~l~i~gR 543 (543)
++|+||+++|+||
T Consensus 423 ~~d~dG~l~~~GR 435 (563)
T PLN02860 423 WIDKAGNLWLIGR 435 (563)
T ss_pred EEcCCCCEEEeec
Confidence 9999999999998
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=481.18 Aligned_cols=394 Identities=29% Similarity=0.458 Sum_probs=314.7
Q ss_pred HHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCe
Q 009114 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFI 164 (543)
Q Consensus 85 ~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~ 164 (543)
|++.|+++||++|+.+ ++.+++||+|++++++++|.+|.++|+++|++|+|+++|+++|+++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~--------~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALID--------DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEE--------TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEE--------CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 6899999999999966 12367999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCccEEEe----cCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHH
Q 009114 165 SVPLYDTLGPDAVKYIVNHASVQAVFC----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLL 240 (543)
Q Consensus 165 ~vpl~~~l~~~~l~~il~~~~~~~vi~----~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (543)
++|+++.++.+++.++++++++++||+ +...+..+.+..........++.++....... ......+.
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~- 143 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKK--------EALKSASL- 143 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTC--------HHHHHHHH-
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhcccccccccccccccccccc--------cccccccc-
Confidence 999999999999999999999999997 22223344444443344556666654321000 00000111
Q ss_pred hcCccCCCCCCC-CCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh--cCcccCCCcEEEEeCChHHHHHH-HHHH
Q 009114 241 SQGRSNLQPFSP-PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYER-ANQV 316 (543)
Q Consensus 241 ~~~~~~~~~~~~-~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~--~~~~~~~~d~~l~~lpl~h~~~~-~~~~ 316 (543)
..... .+ ..++++++++|||||||.||+|.+||+++++.+..+. ....++ |++++++|++|++++ ...+
T Consensus 144 --~~~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~ 216 (417)
T PF00501_consen 144 --SDEPQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALL 216 (417)
T ss_dssp --CHCSH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHH
T ss_pred --ccccc---cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccc
Confidence 00000 00 0578999999999999999999999999999887754 222233 699999999999999 5678
Q ss_pred HHHHhCcEEEEecCC----hHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 317 MTVYSGVAVGFYQGD----NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 317 ~~l~~G~~i~~~~~~----~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
.+++.|+++++.+.. +..+++.+++++||+++++|.+++.+.+..... .
T Consensus 217 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~-------------------------- 269 (417)
T PF00501_consen 217 AALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-T-------------------------- 269 (417)
T ss_dssp HHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-H--------------------------
T ss_pred ccccccccccccccccccccccchhccccccccccccccccccccccccccc-c--------------------------
Confidence 899999999999843 466899999999999999999999986621110 0
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCC-ccccccChhhhccccccCC--CCCCCCCCcCCCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLD--EGDNLSGHVGSPN 469 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~ 469 (543)
+.+....+++|.+++||+++++++.+++++.++. ++++.||+||++.+++... ......+++|.|+
T Consensus 270 -----------~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~ 338 (417)
T PF00501_consen 270 -----------KISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPL 338 (417)
T ss_dssp -----------HGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEES
T ss_pred -----------cccccccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccc
Confidence 0000011469999999999999999999999987 8999999999998887552 2225678999999
Q ss_pred CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 470 ~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+++++|+|.+++++++.++ .|||+|+|++++.||+++|+.|++.|+++|||+|||+|++|+||+|+++||
T Consensus 339 ~~~~~~ivd~~~~~~~~~g~---~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR 409 (417)
T PF00501_consen 339 PGVEVKIVDPNTGEPLPPGE---PGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGR 409 (417)
T ss_dssp TTEEEEEECTTTSSBESTTS---EEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEE
T ss_pred cccccccccccccccccccc---cccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEe
Confidence 99999999977788888777 899999999999999999999999997678999999999999999999998
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=471.65 Aligned_cols=393 Identities=23% Similarity=0.306 Sum_probs=319.3
Q ss_pred HHHHHHHHHh-cCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHHHH
Q 009114 82 HDNFVRAVDT-FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACS 159 (543)
Q Consensus 82 ~~~~~~~~~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~e~~i~~lA~~ 159 (543)
+..+++.... .+|+.|+.+. +...+. +.+||+||.++++++|+.|++ .|+ +||+|+||+||.+|.++++|||+
T Consensus 12 ~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~ 86 (528)
T COG0365 12 LNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA 86 (528)
T ss_pred hhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence 4456666653 4789999886 333233 789999999999999999987 578 99999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhc--cCCC-CeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVP-TVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 160 ~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~--~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
++|++.+|+.+.++++++.+.++++++++||+.+.......... .... .+..+++++.. + +.|
T Consensus 87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~-----------~---~~~ 152 (528)
T COG0365 87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL-----------G---LWY 152 (528)
T ss_pred HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc-----------c---ccH
Confidence 99999999999999999999999999999999876554322111 0000 01113333221 1 667
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh-cCcccCCCcEEEEeCChHHHHHHHH-
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERAN- 314 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~-~~~~~~~~d~~l~~lpl~h~~~~~~- 314 (543)
.++...... ..+..+.+.+|+++|+|||||||+||||+++|++++....... ..+.+.++|++++..+..|+++...
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~ 231 (528)
T COG0365 153 DEAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYS 231 (528)
T ss_pred HHHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHH
Confidence 777755433 2334448899999999999999999999999998766654443 3577779999999999999999998
Q ss_pred HHHHHHhCcEEEEecC----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 315 QVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~~----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
.+.++..|++++++.+ ++..+++.|+++++|+|++.|+.++.|.+.-.
T Consensus 232 v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~---------------------------- 283 (528)
T COG0365 232 VFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL---------------------------- 283 (528)
T ss_pred HHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC----------------------------
Confidence 6789999999999874 27889999999999999999999998866311
Q ss_pred CCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (543)
.++...++||.+.|+|+||++++++++.+.+|++|.+.||+||++++.....+ +..+++.|.|+|
T Consensus 284 --------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~p 348 (528)
T COG0365 284 --------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLP 348 (528)
T ss_pred --------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCC
Confidence 11222369999999999999999999999999999999999999966665555 656677799999
Q ss_pred CeEEEEeecCCCCCCCCCCCCCCceEEEeCc--cchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 471 ~~evkivd~~~~~~~~~~~p~~~GEi~v~g~--~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+++.|+| ++++.++.+ . |+|+|+.+ ++++|||+|||.+.+++- ++||+|||.+++|+||+++|+||
T Consensus 349 G~~~~vvd-d~g~~~~~~---~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~-~~~y~tGD~~~~DedGy~~i~GR 417 (528)
T COG0365 349 GYAVRRVD-DEGNPVPPG---V-GELVVRLPWPGMALTYWNDPERYKEAYF-GRWYRTGDWAERDEDGYFWLHGR 417 (528)
T ss_pred CceeEEEC-CCCCcCCCC---c-eEEEEeCCCchhhhhhhCCHHHHHHHHh-hceeecCceeEEccCCCEEEEee
Confidence 99999999 446655544 3 99999987 999999999999999983 33999999999999999999998
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-57 Score=496.29 Aligned_cols=420 Identities=17% Similarity=0.206 Sum_probs=324.8
Q ss_pred CCCCCHHHHHHHHHH-hcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 76 PEIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
...+..+++|++.++ .+|+++|+.+. ....+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++||+++
T Consensus 85 ~~~N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a 161 (666)
T PLN02654 85 GKTNICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIA 161 (666)
T ss_pred CEeeHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 445677889988776 48999999774 32333457799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHH---------HHHhhccCC----CCeeEEEEeCCCCCC
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN---------SLLSCLSEV----PTVRLIVVIGGIDDQ 221 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~---------~l~~~~~~~----~~l~~ii~~~~~~~~ 221 (543)
++||+++|++++|+++.++++++.+++++++++++|++..... .+....... ..+..++.++.....
T Consensus 162 ~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (666)
T PLN02654 162 MLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAM 241 (666)
T ss_pred HHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccc
Confidence 9999999999999999999999999999999999999875321 111111111 112223333321100
Q ss_pred CCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHH-HHhhhcCcccCCCcEE
Q 009114 222 IPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVY 300 (543)
Q Consensus 222 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~-~~~~~~~~~~~~~d~~ 300 (543)
..............|+++..... ...+.....++|+++|+|||||||.||||+++|++++.. .......++++++|++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~ 320 (666)
T PLN02654 242 KREDTKWQEGRDVWWQDVVPNYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVY 320 (666)
T ss_pred cccccccccCCcccHHHHhhcCC-CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEE
Confidence 00000000011234666653211 112233357899999999999999999999999997643 3444555788999999
Q ss_pred EEeCChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHH
Q 009114 301 ISYLPLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374 (543)
Q Consensus 301 l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~ 374 (543)
++++|+.|+++... .+.+++.|++++++++ ++..+++.|+++++|+++++|+++..|.+.....
T Consensus 321 ~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------- 390 (666)
T PLN02654 321 WCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY---------- 390 (666)
T ss_pred EEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc----------
Confidence 99999999998766 5678999999999873 6888999999999999999999999886531000
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhccc
Q 009114 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCL 451 (543)
Q Consensus 375 ~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~ 451 (543)
..+...+++|.++++|+|+++++.+++.+.+| +++.+.||+||+++.
T Consensus 391 ------------------------------~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~ 440 (666)
T PLN02654 391 ------------------------------VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGF 440 (666)
T ss_pred ------------------------------cccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCe
Confidence 00001158999999999999999999999997 789999999999876
Q ss_pred cccCCCC--CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeC--ccchhhhcCChhhhhhhcC--CCCeee
Q 009114 452 ISQLDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFH 525 (543)
Q Consensus 452 ~~~~~~~--~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~ 525 (543)
.+...+. ...++++|.|++|++++|+| ++++.++.++ .|||||++ |++++|||+|++.|++++. .+|||+
T Consensus 441 ~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~~---~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~ 516 (666)
T PLN02654 441 MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGEC---SGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYF 516 (666)
T ss_pred eeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCCC---ceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEE
Confidence 6654432 35678999999999999999 5566555443 79999999 7999999999999998763 279999
Q ss_pred ccceEEEecCCcEEEecC
Q 009114 526 TGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 526 TGDig~~~~~G~l~i~gR 543 (543)
|||+|++|+||+++|+||
T Consensus 517 TGD~~~~d~dG~l~i~GR 534 (666)
T PLN02654 517 SGDGCSRDKDGYYWLTGR 534 (666)
T ss_pred eCceEEECCCCcEEEeee
Confidence 999999999999999998
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-57 Score=493.98 Aligned_cols=417 Identities=19% Similarity=0.262 Sum_probs=335.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
....+..+++|++.++++||++|+.+. +...++.+.+||+||.+++.++|++|+++|+++||+|+|+++|++|++++
T Consensus 53 ~~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 129 (625)
T TIGR02188 53 GGELNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIA 129 (625)
T ss_pred CCEEEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 345678899999998899999999875 33234567899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC---------HHHHHhhccCCC-CeeEEEEeCCCCCCCCC
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVP-TVRLIVVIGGIDDQIPS 224 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~-~l~~ii~~~~~~~~~~~ 224 (543)
++||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.+.....+ .++.+++++.......
T Consensus 130 ~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 208 (625)
T TIGR02188 130 MLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP- 208 (625)
T ss_pred HHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-
Confidence 99999999999999999999999999999999999998653 223333333445 5666776654321110
Q ss_pred CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEe
Q 009114 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISY 303 (543)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 303 (543)
.. ......|+++...... ..+.....++|+++|+|||||||.||||+++|++++..... ....+.+.++|+++++
T Consensus 209 ~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~ 284 (625)
T TIGR02188 209 WV---EGRDVWWHDLMAKASA-YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCT 284 (625)
T ss_pred cc---ccccccHHHHHhhcCC-CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEEC
Confidence 00 1122457776654322 22334567899999999999999999999999998655433 3344678899999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHH
Q 009114 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (543)
Q Consensus 304 lpl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 377 (543)
+|++|+.+... .+.++..|++++++.+ ++..+++.++++++|++.++|+++..+.+.....
T Consensus 285 ~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------- 351 (625)
T TIGR02188 285 ADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW------------- 351 (625)
T ss_pred CCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc-------------
Confidence 99999988765 6678999999999863 7899999999999999999999998876521000
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhcccccc
Q 009114 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 378 ~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~ 454 (543)
.++...+++|.+++||+++++++.+++.+.++ +++++.||+||+++.++.
T Consensus 352 ---------------------------~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~ 404 (625)
T TIGR02188 352 ---------------------------VKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMIT 404 (625)
T ss_pred ---------------------------cccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceee
Confidence 00111258999999999999999999999885 789999999999876554
Q ss_pred CCCC--CCCCCCcCCCCCCeEEEEeecCCCCCCC-CCCCCCCceEEEeC--ccchhhhcCChhhhhhhcC--CCCeeecc
Q 009114 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTS-EDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTG 527 (543)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~evkivd~~~~~~~~-~~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~TG 527 (543)
..+. ...++++|+|+++++++|+| ++++..+ .++ .|||+|+| |++++|||++++.+.+.+. .+|||+||
T Consensus 405 ~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~---~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG 480 (625)
T TIGR02188 405 PLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGE---GGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTG 480 (625)
T ss_pred cCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCC---eEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECC
Confidence 4332 35678999999999999999 6666666 555 89999999 6899999999999988763 48999999
Q ss_pred ceEEEecCCcEEEecC
Q 009114 528 DIGMWIPGGRLKIIDR 543 (543)
Q Consensus 528 Dig~~~~~G~l~i~gR 543 (543)
|+|++|+||+++|+||
T Consensus 481 Dl~~~d~dG~l~i~GR 496 (625)
T TIGR02188 481 DGARRDKDGYIWITGR 496 (625)
T ss_pred ceEEEcCCCcEEEEec
Confidence 9999999999999998
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-57 Score=486.04 Aligned_cols=399 Identities=22% Similarity=0.260 Sum_probs=319.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...++.+.|.+.++++|++.++.+. .. +.+||+||.++++++|..|.+ .+||+|+|+++|++||+++++
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHH
Confidence 3478999999999999999888543 21 248999999999999999987 389999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCC-CeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-TVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
||+++|+++|||++.++.+++.++|++++++++|++.+....+.+...... ....++.+++... ...
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRK------------ELS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhh------------hcc
Confidence 999999999999999999999999999999999998776665544322110 1113444432110 001
Q ss_pred HHHHHhcCc----c-----CCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCCh
Q 009114 236 YSNLLSQGR----S-----NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (543)
Q Consensus 236 ~~~l~~~~~----~-----~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl 306 (543)
+.+....+. . .........++|+++|+|||||||.||||++||+++...+......+.++++|++++++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~ 233 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPP 233 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecch
Confidence 111110000 0 0011224567999999999999999999999999999887776666778899999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 009114 307 AHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (543)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (543)
+|++++.. .+.++..|+++++.. .++..+++.|+++++|++.++|+++..+.+.....
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------- 294 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ------------------- 294 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc-------------------
Confidence 99999876 567899999998864 68999999999999999999999999886632110
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCC-CC
Q 009114 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-NL 461 (543)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~-~~ 461 (543)
....+++|.+++||+++++++.+++++.+ ++.++++||+||++.+++...... ..
T Consensus 295 -----------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 351 (539)
T PRK06334 295 -----------------------ESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKH 351 (539)
T ss_pred -----------------------ccccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCC
Confidence 00115899999999999999999999988 689999999999987666543322 34
Q ss_pred CCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc-CCCCeeeccceEEEecCCcEEE
Q 009114 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI-DEDGWFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 462 ~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~-~~~gw~~TGDig~~~~~G~l~i 540 (543)
.+++|.|+++++++|+|.+++..++.|+ .|||+|+|++++.|||++|+.+.... +.+|||+|||+|++|++|+|+|
T Consensus 352 ~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~ 428 (539)
T PRK06334 352 ESCVGMPIRGMDVLIVSEETKVPVSSGE---TGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFL 428 (539)
T ss_pred CCcCceecCCCEEEEEcCCCCccCCCCc---eEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEE
Confidence 5689999999999999966667777776 89999999999999999998765432 4578999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 429 ~GR 431 (539)
T PRK06334 429 KGR 431 (539)
T ss_pred Eec
Confidence 998
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-57 Score=492.24 Aligned_cols=418 Identities=24% Similarity=0.320 Sum_probs=333.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|++++|++.++++||++|+.+... .+.....+++||+||.+++.++|++|+++|+++||+|+++++|++||+++++
T Consensus 23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l 101 (632)
T PRK07529 23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW 101 (632)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 357899999999999999999977511 1112235679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC-----HHHHHhhccCCCCeeEEEEeCCCCCC--CCCC----
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQ--IPSL---- 225 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~~~~~--~~~~---- 225 (543)
||+++| +++||++.++++++.+++++++++++|++... .+++.......+.++.++.++..... ....
T Consensus 102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (632)
T PRK07529 102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPL 180 (632)
T ss_pred HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCcccccccccccccc
Confidence 999999 56999999999999999999999999997543 34455555566777877777543210 0000
Q ss_pred -CcCCCceeeeHHHHHhcCccCC-CCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEe
Q 009114 226 -PITTGVQILTYSNLLSQGRSNL-QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303 (543)
Q Consensus 226 -~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 303 (543)
....+..+..|.+.+....... .......++++++|+|||||||.||||++||++++..+......+.+.++|++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 260 (632)
T PRK07529 181 IRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCG 260 (632)
T ss_pred cccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 0002334566777665432221 12233467999999999999999999999999999887766666778899999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC----C---hHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHH
Q 009114 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG----D---NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (543)
Q Consensus 304 lpl~h~~~~~~-~~~~l~~G~~i~~~~~----~---~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 375 (543)
+|++|+++... .+.+++.|+++++.+. + ...+++.++++++|++.++|+++..+.+...
T Consensus 261 ~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~------------- 327 (632)
T PRK07529 261 LPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV------------- 327 (632)
T ss_pred cCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------
Confidence 99999999886 5678999999998752 2 3578899999999999999999998765200
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccC
Q 009114 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (543)
Q Consensus 376 ~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 455 (543)
+....+++|.+++||+++++++.+.+++.++++++++||+||+++++...
T Consensus 328 ------------------------------~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~ 377 (632)
T PRK07529 328 ------------------------------DGHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVN 377 (632)
T ss_pred ------------------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccC
Confidence 00011589999999999999999999999999999999999998766655
Q ss_pred CCC-CCCCCCcCCCCCCeEEEEeecC-CC---CCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceE
Q 009114 456 DEG-DNLSGHVGSPNAACEIKLVDVP-EM---NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIG 530 (543)
Q Consensus 456 ~~~-~~~~~~vG~p~~~~evkivd~~-~~---~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig 530 (543)
... ....+++|.|+|+++++|+.++ ++ ..++.++ .|||+|+|++++.||++++ .+.+.|..+|||+|||+|
T Consensus 378 ~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~---~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGDlg 453 (632)
T PRK07529 378 PPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDE---VGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGDLG 453 (632)
T ss_pred CccccccCCCcccccCCceEEEEEcCCCCcccccCCCCC---ceEEEEECCCccccccCCc-cccccccCCCceEcCcEE
Confidence 433 2467899999999999997543 33 3344444 8999999999999999865 466667679999999999
Q ss_pred EEecCCcEEEecC
Q 009114 531 MWIPGGRLKIIDR 543 (543)
Q Consensus 531 ~~~~~G~l~i~gR 543 (543)
++|+||+++|.||
T Consensus 454 ~~d~dG~l~i~GR 466 (632)
T PRK07529 454 RIDADGYFWLTGR 466 (632)
T ss_pred EEcCCceEEEEec
Confidence 9999999999998
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-56 Score=485.16 Aligned_cols=418 Identities=16% Similarity=0.184 Sum_probs=328.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...+.++++|++.++.+|+++|+.+. +...+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++|+++++
T Consensus 49 ~~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~ 125 (628)
T TIGR02316 49 GRTNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAM 125 (628)
T ss_pred CEeeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 44677788999988889999999775 333344577999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC---------HHHHHhhccCC-CCeeEEEEeCCCCCCCCCC
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEV-PTVRLIVVIGGIDDQIPSL 225 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~l~~ii~~~~~~~~~~~~ 225 (543)
+||+++|++++|+++.++++++.++++++++++||+++.. .+.+.++.... ...+.+++++.......
T Consensus 126 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-- 203 (628)
T TIGR02316 126 LACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR-- 203 (628)
T ss_pred HHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcC--
Confidence 9999999999999999999999999999999999997642 12222222221 23455666654221100
Q ss_pred CcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHH-HHhhhcCcccCCCcEEEEeC
Q 009114 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYISYL 304 (543)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~-~~~~~~~~~~~~~d~~l~~l 304 (543)
........|+++.........+.....++++++|+|||||||.||||+++|++++.. .......+.++++|++++++
T Consensus 204 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 281 (628)
T TIGR02316 204 --LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSAS 281 (628)
T ss_pred --cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 000012456666544322122223356899999999999999999999999997644 33444457788999999999
Q ss_pred ChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHH
Q 009114 305 PLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (543)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 378 (543)
|+.|+++... .+.+++.|++++++++ ++..+++.++++++|+++++|++++.+.+....
T Consensus 282 ~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------- 346 (628)
T TIGR02316 282 DVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA--------------- 346 (628)
T ss_pred CCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCc---------------
Confidence 9999998754 6778999999999863 678899999999999999999999877542000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC
Q 009114 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG 458 (543)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 458 (543)
.++....+++|.+++||+++++++.++++..+++++++.||+||++..++...+.
T Consensus 347 -------------------------~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~ 401 (628)
T TIGR02316 347 -------------------------WLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPG 401 (628)
T ss_pred -------------------------ccccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCC
Confidence 0011112589999999999999999999999999999999999998544332221
Q ss_pred ----CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCc---cchhhhcCChhhhhhhc---CCCCeeeccc
Q 009114 459 ----DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVI---DEDGWFHTGD 528 (543)
Q Consensus 459 ----~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~---~v~~gY~~~~~~t~~~~---~~~gw~~TGD 528 (543)
....+++|.|+++++++|+|.++++.++.++ .|||+|+|| +++.|||++++.+.+.+ ..+|||+|||
T Consensus 402 ~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~---~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD 478 (628)
T TIGR02316 402 LDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNE---KGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFD 478 (628)
T ss_pred CCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCC---cEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCc
Confidence 2345889999999999999965777777665 899999998 57899999999988765 2478999999
Q ss_pred eEEEecCCcEEEecC
Q 009114 529 IGMWIPGGRLKIIDR 543 (543)
Q Consensus 529 ig~~~~~G~l~i~gR 543 (543)
+|++|+||+|+|+||
T Consensus 479 ~g~~d~dG~l~i~GR 493 (628)
T TIGR02316 479 WGIRDEDGYTFILGR 493 (628)
T ss_pred eEEEcCCCcEEEEEc
Confidence 999999999999998
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-56 Score=479.89 Aligned_cols=398 Identities=21% Similarity=0.259 Sum_probs=330.1
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.++.++|++.++++||++|+... + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999654 2 34999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|+++||+++.++.+++.+++++++++++|++.+..+.+..+....+.++.++....... .....+.++++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 192 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDE-------PSGSTDETLDD 192 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccc-------cCCcCcccHHH
Confidence 99999999999999999999999999999999998877766555444455554443322110 01124467888
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~ 318 (543)
+....... ..+..++++++|+|||||||.||||+++|+++...+......+.+.++|++++.+|++|.+++...+.+
T Consensus 193 ~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 269 (549)
T PRK07788 193 LIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLA 269 (549)
T ss_pred HhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHH
Confidence 76543321 122345788999999999999999999999999988877777788899999999999999999877888
Q ss_pred HHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 009114 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (543)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (543)
+..|+++++.. +++..+++.++++++|++.++|.++..+.+......
T Consensus 270 l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------- 317 (549)
T PRK07788 270 MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL-------------------------------- 317 (549)
T ss_pred HHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc--------------------------------
Confidence 99999998876 699999999999999999999999998865311100
Q ss_pred hHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-CCCCCCcCCCCCCeEEEE
Q 009114 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKL 476 (543)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~evki 476 (543)
.....+++|.+++||+++++++.+++++.|++++++.||+||++..+...... ....+++|.|+++++++|
T Consensus 318 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 389 (549)
T PRK07788 318 --------AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKI 389 (549)
T ss_pred --------CCCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEE
Confidence 00011589999999999999999999999999999999999987655433221 245678999999999999
Q ss_pred eecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 477 vd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+| ++++.++.++ .|||+|+|+.++.||+++++. + . .+|||+|||+|++|+||+++|+||
T Consensus 390 ~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~~g~l~~~GR 448 (549)
T PRK07788 390 LD-ENGNEVPRGV---VGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDEDGLLFVDGR 448 (549)
T ss_pred EC-CCcCCCCCCC---eEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcCCCCEEEecc
Confidence 99 5666666665 899999999999999998875 2 2 479999999999999999999998
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-56 Score=485.53 Aligned_cols=415 Identities=19% Similarity=0.266 Sum_probs=331.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+..+++|++.++++||++|+.+. +...+..+.+||+||++++.++|++|+++|+++||+|+|+++|++|++++++
T Consensus 65 ~~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 141 (637)
T PRK00174 65 ELNVSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAML 141 (637)
T ss_pred EeEHHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4455678898889999999999775 3222345779999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH---------HHHHhhccCCCCeeEEEEeCCCCCCCCCCCc
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (543)
||+++|++++|+++.++++++.+++++++++++|+++... +.+.+.....+.++.+++++....... .
T Consensus 142 A~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 218 (637)
T PRK00174 142 ACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD-W-- 218 (637)
T ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC-c--
Confidence 9999999999999999999999999999999999976532 233333334456667776654321110 0
Q ss_pred CCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEeCCh
Q 009114 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPL 306 (543)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~lpl 306 (543)
.......|+++..... ...+.....++|+++|+|||||||.||||+++|++++..... ....+.+.++|++++++|+
T Consensus 219 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 296 (637)
T PRK00174 219 -VEGRDLWWHELVAGAS-DECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADV 296 (637)
T ss_pred -CCCCcccHHHHHhhcC-CCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCc
Confidence 0112345677664322 222334466899999999999999999999999998755432 3334678889999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 009114 307 AHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (543)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (543)
+|+.+... .+.+++.|++++++.+ ++..+++.|+++++|++.++|++++.+.+.....
T Consensus 297 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------- 360 (637)
T PRK00174 297 GWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH---------------- 360 (637)
T ss_pred hHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc----------------
Confidence 99998765 6678999999998763 6889999999999999999999998886531000
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhccccccCCC
Q 009114 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQLDE 457 (543)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~ 457 (543)
......++||.+++||+++++++.+++++.++ +++++.||+||+++.++...+
T Consensus 361 ------------------------~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~ 416 (637)
T PRK00174 361 ------------------------PKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLP 416 (637)
T ss_pred ------------------------cccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCC
Confidence 00011258999999999999999999998886 789999999999876554333
Q ss_pred C--CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeC--ccchhhhcCChhhhhhhc--CCCCeeeccceEE
Q 009114 458 G--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGDIGM 531 (543)
Q Consensus 458 ~--~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~--~~~gw~~TGDig~ 531 (543)
. ....+++|.|+++++++|+| ++++.++.++ .|||+|+| |++++|||++++.+.+.+ ..+|||+|||+|+
T Consensus 417 ~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~ 492 (637)
T PRK00174 417 GATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGE---GGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGAR 492 (637)
T ss_pred CCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCC---cEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEE
Confidence 2 24567899999999999999 6666666665 89999999 699999999999998876 3589999999999
Q ss_pred EecCCcEEEecC
Q 009114 532 WIPGGRLKIIDR 543 (543)
Q Consensus 532 ~~~~G~l~i~gR 543 (543)
+|+||+++|+||
T Consensus 493 ~d~dG~l~~~GR 504 (637)
T PRK00174 493 RDEDGYYWITGR 504 (637)
T ss_pred EcCCCcEEEEEe
Confidence 999999999998
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=476.51 Aligned_cols=402 Identities=22% Similarity=0.329 Sum_probs=331.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++.+||++|+... +...++++.+||+||.++++++|++|.+.|+++|++|+++++|+++|+++++|
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la 99 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA 99 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence 368999999999999999999775 32234457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC-----HHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT-----LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~-----~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
|+++|++++|+++.++.+++.++++.++++++|+++.. .+.+.++....+.++.++.++...
T Consensus 100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 166 (547)
T PRK13295 100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDG------------- 166 (547)
T ss_pred HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCC-------------
Confidence 99999999999999999999999999999999998753 233333334455666666654321
Q ss_pred eeeHHHHHhcCc-----c--CCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCC
Q 009114 233 ILTYSNLLSQGR-----S--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305 (543)
Q Consensus 233 ~~~~~~l~~~~~-----~--~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lp 305 (543)
..+|.++..... . .........++++++|+|||||||.||||+++|++++..+......+.+.++|++++++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p 246 (547)
T PRK13295 167 ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASP 246 (547)
T ss_pred ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecC
Confidence 123444432210 0 011122356789999999999999999999999999988887777778899999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 009114 306 LAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (543)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (543)
++|.++++. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......
T Consensus 247 ~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~------------------- 307 (547)
T PRK13295 247 MAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES------------------- 307 (547)
T ss_pred chhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc-------------------
Confidence 999999876 567899999999877 68999999999999999999999998876531100
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--CCC
Q 009114 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNL 461 (543)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~ 461 (543)
....+++|.+++||+++++++.+++++.+++++++.||+||++.+++..... ...
T Consensus 308 -----------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 364 (547)
T PRK13295 308 -----------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERA 364 (547)
T ss_pred -----------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhc
Confidence 0011589999999999999999999999999999999999998765544322 233
Q ss_pred CCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEe
Q 009114 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 462 ~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~ 541 (543)
.+++|.|+++++++|+| ++++..+.++ .|||+|+|++++.||+++|+.|++. .+|||+|||+|+++++|.++|+
T Consensus 365 ~~~~G~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~ 438 (547)
T PRK13295 365 STTDGCPLPGVEVRVVD-ADGAPLPAGQ---IGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRIS 438 (547)
T ss_pred cCccccccCCcEEEEEC-CCCCCCCCCC---CCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEE
Confidence 46899999999999999 5666667666 8999999999999999999999876 5789999999999999999999
Q ss_pred cC
Q 009114 542 DR 543 (543)
Q Consensus 542 gR 543 (543)
||
T Consensus 439 gR 440 (547)
T PRK13295 439 GR 440 (547)
T ss_pred ec
Confidence 98
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=472.94 Aligned_cols=410 Identities=24% Similarity=0.361 Sum_probs=327.1
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..|+.++|++.++.+|+++|+... + +.+||+||.+++.++|++|.+ .|+++||+|+|+++|+++|+++++
T Consensus 23 ~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~l 93 (562)
T PRK05677 23 YPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 458999999999999999999653 2 359999999999999999997 699999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCC--CCCC-----------
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQIP----------- 223 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~--~~~~----------- 223 (543)
||+++|++++|+++.++.+++.+++++++++++|++.+....+.+.... ..++.++..+..+ +...
T Consensus 94 a~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (562)
T PRK05677 94 GAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK-TGVKHVIVTEVADMLPPLKRLLINAVVKHV 172 (562)
T ss_pred HHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc-cCcceeEEecccccccchhhhhcccchhhc
Confidence 9999999999999999999999999999999999988766555444322 2344444432111 0000
Q ss_pred -CCCcC-CCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCc--ccC-CCc
Q 009114 224 -SLPIT-TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT--KFY-PSD 298 (543)
Q Consensus 224 -~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~--~~~-~~d 298 (543)
..... .......+.+.+..+...........++|+++|+|||||||.||||+++|+++...+......+ .+. ..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~ 252 (562)
T PRK05677 173 KKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCE 252 (562)
T ss_pred cccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCcc
Confidence 00000 0012344555554443323333445789999999999999999999999999987765443322 233 347
Q ss_pred EEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHH
Q 009114 299 VYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (543)
Q Consensus 299 ~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 375 (543)
++++.+|++|.+++.. .+..+..|+..++.+ .++..+++.++++++|+++++|.++..+.....
T Consensus 253 ~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------------- 319 (562)
T PRK05677 253 ILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA------------- 319 (562)
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc-------------
Confidence 8899999999999875 455777888776665 588899999999999999999999987755200
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccC
Q 009114 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (543)
Q Consensus 376 ~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 455 (543)
.+.....++|.+++||+++++++.+.+++.+++++++.||+||++.+++..
T Consensus 320 -----------------------------~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 370 (562)
T PRK05677 320 -----------------------------FRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVN 370 (562)
T ss_pred -----------------------------cccCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeec
Confidence 000011489999999999999999999999999999999999998776655
Q ss_pred CCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecC
Q 009114 456 DEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (543)
Q Consensus 456 ~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~ 535 (543)
.......+++|.|+++++++|+| ++++.++.++ .|||+|+|+.++.||+++|+.|++.|+.+|||+|||+|++|+|
T Consensus 371 ~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~ 446 (562)
T PRK05677 371 PSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGE---VGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQED 446 (562)
T ss_pred CccCCCCCccCccCCCCEEEEEC-CCCCCCCCCC---CeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCC
Confidence 54455678899999999999999 5677777776 8999999999999999999999999988999999999999999
Q ss_pred CcEEEecC
Q 009114 536 GRLKIIDR 543 (543)
Q Consensus 536 G~l~i~gR 543 (543)
|.++|+||
T Consensus 447 G~l~i~GR 454 (562)
T PRK05677 447 GYMRIVDR 454 (562)
T ss_pred CcEEEEec
Confidence 99999998
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=474.82 Aligned_cols=406 Identities=19% Similarity=0.277 Sum_probs=334.6
Q ss_pred CCCCHHHHHHHHHH-hcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHDNFVRAVD-TFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~~~~~~~~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
..+.+++++++.++ .+||+.|+.+. +.. ..+.+||+||.+++.++|.+|.++|+++||+|+|+++|+++|++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 45677789998887 47999999775 332 2357999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|++++|+++.++++++.+++++++++++|++......+.. ..++.++.++.+++... ......+
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~ 185 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVE--------EGPGTLD 185 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcC--------CCcCccC
Confidence 9999999999999999999999999999999999998776544322 24456667776654321 0112356
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~- 314 (543)
|.++...... ..+.....++++++|+|||||||.||||+++|+++++.+......+.+.++|++++..|+.|+++...
T Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~ 264 (570)
T PRK04319 186 FNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYG 264 (570)
T ss_pred HHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHH
Confidence 7776644322 22333456789999999999999999999999999988877777788899999999999999998765
Q ss_pred HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
.+.++..|+++++.. +++..+++.|+++++|++.++|.+++.+.+......
T Consensus 265 ~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------- 317 (570)
T PRK04319 265 IFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV--------------------------- 317 (570)
T ss_pred HHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc---------------------------
Confidence 667899999998875 689999999999999999999999998864210000
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-CCCCCCcCCCCCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAA 471 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~ 471 (543)
+....+++|.+++||+++++++.++++..++.++++.||+||+++.++..... +...+++|.|+|+
T Consensus 318 -------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g 384 (570)
T PRK04319 318 -------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPG 384 (570)
T ss_pred -------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCC
Confidence 00011589999999999999999999999999999999999998665543332 3457899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCCceEEEeC--ccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 472 ~evkivd~~~~~~~~~~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++|+| +++...+.++ .|||+|+| ++++.|||++++.|++.|. +|||+|||+|++++||+++|+||
T Consensus 385 ~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR 453 (570)
T PRK04319 385 IEAAIVD-DQGNELPPNR---MGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGR 453 (570)
T ss_pred CEEEEEC-CCCCCCCCCC---ceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEec
Confidence 9999999 4555555554 89999997 8999999999999999994 89999999999999999999998
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-55 Score=469.86 Aligned_cols=409 Identities=23% Similarity=0.362 Sum_probs=337.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..|++++|.+.++++|+++|+.+. + +.+||+||.+++.++|.+|.+. |+++|++|+|+++|+++|+++++
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 79 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY 79 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence 468999999999999999999765 3 2499999999999999999999 99999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCC---CC----CCC-----
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID---DQ----IPS----- 224 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~---~~----~~~----- 224 (543)
||+++|++++|+++.++.+++..++++++++++|++.+..+.+.+....+ .++.+++.+... .. ...
T Consensus 80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (546)
T PRK08314 80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAWLRAE 158 (546)
T ss_pred HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhcccccccCcccccccc
Confidence 99999999999999999999999999999999999988777766544333 234444332100 00 000
Q ss_pred --CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEE
Q 009114 225 --LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYIS 302 (543)
Q Consensus 225 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~ 302 (543)
.....+..+..|++...... ..+.....++++++|+|||||||.||||++||++++..+........+.++|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~ 236 (546)
T PRK08314 159 PPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLA 236 (546)
T ss_pred cccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEE
Confidence 00011223456777664432 12333456889999999999999999999999999998887777778899999999
Q ss_pred eCChHHHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 009114 303 YLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (543)
Q Consensus 303 ~lpl~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (543)
++|++|++++.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.....
T Consensus 237 ~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~------------------ 298 (546)
T PRK08314 237 VLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPG------------------ 298 (546)
T ss_pred EcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCC------------------
Confidence 999999999876 567899999999987 689999999999999999999999987754100
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCC
Q 009114 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN 460 (543)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~ 460 (543)
.+....+++|.+++||+++++++.+.+.+.|++++++.||+||++...........
T Consensus 299 ------------------------~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 354 (546)
T PRK08314 299 ------------------------LAERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRP 354 (546)
T ss_pred ------------------------ccccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCC
Confidence 00001147999999999999999999999999999999999999876665544445
Q ss_pred CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC---CCCeeeccceEEEecCCc
Q 009114 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID---EDGWFHTGDIGMWIPGGR 537 (543)
Q Consensus 461 ~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~---~~gw~~TGDig~~~~~G~ 537 (543)
..+++|.|+++++++|+|+++++.++.+. .|||+|+|++++.||+++++.|++.|. .++||+|||+|+++++|+
T Consensus 355 ~~~~~G~~~~g~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~ 431 (546)
T PRK08314 355 KLQCLGIPTFGVDARVIDPETLEELPPGE---VGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGY 431 (546)
T ss_pred CCCccCcccCCeEEEEEeCCCCcCCCCCC---ceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCc
Confidence 56789999999999999977788777776 899999999999999999999998873 346999999999999999
Q ss_pred EEEecC
Q 009114 538 LKIIDR 543 (543)
Q Consensus 538 l~i~gR 543 (543)
+++.||
T Consensus 432 l~~~GR 437 (546)
T PRK08314 432 FFITDR 437 (546)
T ss_pred EEEEec
Confidence 999998
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=472.65 Aligned_cols=398 Identities=23% Similarity=0.338 Sum_probs=312.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCc----ccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGT----VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~----~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.|+.++|++.++++||++|+.+. ++. ...++.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~ 82 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL 82 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence 57889999999999999999764 321 12345799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCc--CHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ--TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~--~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
++||+++|++++|+++.++.+++.+++++++++++|++.. ....+... .....+.++.++... ...
T Consensus 83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~----------~~~ 150 (552)
T PRK09274 83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRL----------LWG 150 (552)
T ss_pred HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheecccccc----------ccC
Confidence 9999999999999999999999999999999999998752 11222111 112233344333210 001
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~ 312 (543)
...++++...............++++++|+|||||||.||||++||+++...+......+.+.++|+.++.+|++|++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~ 230 (552)
T PRK09274 151 GTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGP 230 (552)
T ss_pred CccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhh
Confidence 12455554222222222334567899999999999999999999999999988877777888999999999999987653
Q ss_pred HHHHHHHHhCcEEEEec--------CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 313 ANQVMTVYSGVAVGFYQ--------GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 313 ~~~~~~l~~G~~i~~~~--------~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
..|+++++.+ .++..+++.|+++++|+++++|.++..+.+.....
T Consensus 231 -------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------- 283 (552)
T PRK09274 231 -------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN-------------------- 283 (552)
T ss_pred -------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc--------------------
Confidence 3466766643 47889999999999999999999999987632110
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh--CCccccccChhhhccccccCCCC----
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEG---- 458 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~---- 458 (543)
....+++|.+++||+++++++.+.+++.| |+++++.||+||++++++.....
T Consensus 284 ----------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~ 341 (552)
T PRK09274 284 ----------------------GIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFA 341 (552)
T ss_pred ----------------------CCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhcc
Confidence 00115899999999999999999999999 57999999999998765433211
Q ss_pred ------CCCCCCcCCCCCCeEEEEeecC--------CCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc--CCCC
Q 009114 459 ------DNLSGHVGSPNAACEIKLVDVP--------EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI--DEDG 522 (543)
Q Consensus 459 ------~~~~~~vG~p~~~~evkivd~~--------~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~--~~~g 522 (543)
.....++|+|+++++++|+|+. +++.++.++ .|||+|+|++++.|||++|+.|.+.| +.+|
T Consensus 342 ~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g 418 (552)
T PRK09274 342 TRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE---IGEIVVAGPMVTRSYYNRPEATRLAKIPDGQG 418 (552)
T ss_pred ccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCC---eeEEEEecCcccccccCChHHhhhhhcccCCC
Confidence 1123479999999999999953 234445554 89999999999999999999999876 4567
Q ss_pred --eeeccceEEEecCCcEEEecC
Q 009114 523 --WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 523 --w~~TGDig~~~~~G~l~i~gR 543 (543)
||+|||+|++|+||+|+|+||
T Consensus 419 ~~w~~TGDlg~~d~dG~l~~~GR 441 (552)
T PRK09274 419 DVWHRMGDLGYLDAQGRLWFCGR 441 (552)
T ss_pred CcEEEcCCEEEEccCCcEEEEec
Confidence 999999999999999999998
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=476.68 Aligned_cols=404 Identities=20% Similarity=0.260 Sum_probs=315.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...|+.++|++.++.+||++++.+....+...+.++.+||+||.++++++|++|.+. +++||+|+|+++|++||++++
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~ 96 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAF 96 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHH
Confidence 3457999999999999999999976410011223467899999999999999999987 899999999999999999999
Q ss_pred HHHHhcCCeEEecC-CCCC--HHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCC--eeEEEEeCCCCCCCCCCCcCCC
Q 009114 156 HACSAYSFISVPLY-DTLG--PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTG 230 (543)
Q Consensus 156 lA~~~~G~~~vpl~-~~l~--~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~ 230 (543)
+||+++|+++||++ +..+ .+++.+++++++++++|++.+..+.+.+.....+. ...++.++...+.
T Consensus 97 lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 167 (631)
T PRK07769 97 FGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDE--------- 167 (631)
T ss_pred HHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccccc---------
Confidence 99999999999995 4443 67899999999999999988766555443322221 1223333221100
Q ss_pred ceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHH
Q 009114 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~ 310 (543)
. . . ........++++++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|++
T Consensus 168 ---------~--~-~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~ 234 (631)
T PRK07769 168 ---------V--G-A-TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDM 234 (631)
T ss_pred ---------c--c-c-ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCch
Confidence 0 0 0 0111235679999999999999999999999999998877776667888999999999999999
Q ss_pred HHHHHHHHHHhCcEEEEec---C--ChHhHHHHHHhhCC---eEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 009114 311 ERANQVMTVYSGVAVGFYQ---G--DNMKLMDDMAALRP---TVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNA 382 (543)
Q Consensus 311 ~~~~~~~~l~~G~~i~~~~---~--~~~~l~~~i~~~k~---t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 382 (543)
++...+.+++.|+++++++ + ++..+++.++++++ +++..+|.++..+..... ...
T Consensus 235 gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~~~--------------- 297 (631)
T PRK07769 235 GLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--LPK--------------- 297 (631)
T ss_pred hhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--cch---------------
Confidence 9988777888899998875 2 88889999998876 889999998876643100 000
Q ss_pred HHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh---CC---ccccccChhhhccccccCC
Q 009114 383 KKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLISQLD 456 (543)
Q Consensus 383 k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~---~~---~i~~~YG~TE~~~~~~~~~ 456 (543)
.+. ..+ ..+++|.+++||+++++++.+.+++.| |+ .++++||+||++..++...
T Consensus 298 ------~~~---~~~-----------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~ 357 (631)
T PRK07769 298 ------DGE---PPL-----------DLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTP 357 (631)
T ss_pred ------hcc---cCc-----------chhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccC
Confidence 000 000 115899999999999999999999987 33 5999999999876555432
Q ss_pred CCC---------------------------CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcC
Q 009114 457 EGD---------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (543)
Q Consensus 457 ~~~---------------------------~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~ 509 (543)
..+ ...+++|+|.++.+++|+|.++++.++.++ .|||||+|++++.|||+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge---~GEl~v~gp~v~~GY~~ 434 (631)
T PRK07769 358 MDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQ---IGEIWLHGNNIGTGYWG 434 (631)
T ss_pred CCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCC---EEEEEecCCCccccccC
Confidence 211 012479999999999999977777777776 89999999999999999
Q ss_pred ChhhhhhhcC-----------------CCCeeeccceEEEecCCcEEEecC
Q 009114 510 DEIQTKEVID-----------------EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 510 ~~~~t~~~~~-----------------~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++.|++.|. .+|||+|||+|+++ ||+|+|+||
T Consensus 435 ~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR 484 (631)
T PRK07769 435 KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGR 484 (631)
T ss_pred ChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcc
Confidence 9999999984 25899999999995 999999998
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=464.87 Aligned_cols=402 Identities=28% Similarity=0.386 Sum_probs=332.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...|+.+++.+.+.++||++|+... +.. +.+||.||+++++++|++|.+.|+++||+|+++++|+++|++++
T Consensus 20 ~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~ 92 (537)
T PLN02246 20 PNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAF 92 (537)
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence 45678999999999999999998653 211 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|++++|+++.++.+++..+++.++++++|++....+.+...... +.+ .++.+++.. .....
T Consensus 93 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~-~~i~~~~~~-----------~~~~~ 159 (537)
T PLN02246 93 LGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DGV-TVVTIDDPP-----------EGCLH 159 (537)
T ss_pred HHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CCc-eEEEeCCCC-----------CCcee
Confidence 99999999999999999999999999999999999998877766554321 222 344444321 11245
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lpl~h~~~ 311 (543)
+.++...... ..+.....++++++++|||||||.||||+++|++++..+..... .+.+.++|++++.+|++|.++
T Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~ 238 (537)
T PLN02246 160 FSELTQADEN-ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYS 238 (537)
T ss_pred HHHHhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHH
Confidence 5555443221 12333456899999999999999999999999999887765432 366889999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
+.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+....
T Consensus 239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------- 292 (537)
T PLN02246 239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV-------------------------- 292 (537)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc--------------------------
Confidence 876 456799999999988 6899999999999999999999999887542100
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCC-----CCCCCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLD-----EGDNLSG 463 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~-----~~~~~~~ 463 (543)
.....+++|.+++||+++++++.+++++.| ++.+++.||+||++.+++... ......+
T Consensus 293 ----------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 356 (537)
T PLN02246 293 ----------------EKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSG 356 (537)
T ss_pred ----------------cccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCC
Confidence 000114899999999999999999999988 678999999999876544321 1234567
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|+|+++++++|+|+++++.++.++ .|||+++|++++.|||++++.|++.++.+|||+|||+|+++++|++++.||
T Consensus 357 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR 433 (537)
T PLN02246 357 SCGTVVRNAELKIVDPETGASLPRNQ---PGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDR 433 (537)
T ss_pred ccccccCCcEEEEecCCCCCcCCCCC---ceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEec
Confidence 89999999999999977777777776 899999999999999999999999998899999999999999999999998
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=470.01 Aligned_cols=400 Identities=24% Similarity=0.314 Sum_probs=318.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..+..+|.+ +++|+++++... ++. ..+||+||.++++++|++|.+ .|+++||+|+|+++|+.+|+++++|
T Consensus 41 ~~~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la 111 (560)
T PLN02574 41 DAVSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLA 111 (560)
T ss_pred CHHHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHH
Confidence 334555655 678999988653 221 248999999999999999999 9999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|++++|++|.++.+++.+++++++++++|++.+..+.+.... .. ++.++..... .........|.
T Consensus 112 ~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~-----~~~~~~~~~~~ 180 (560)
T PLN02574 112 VLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLG-----VP-VIGVPENYDF-----DSKRIEFPKFY 180 (560)
T ss_pred HHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcC-----Cc-EEecCccccc-----ccCccCcccHH
Confidence 9999999999999999999999999999999999987666554321 11 2222211100 00011223566
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc----Ccc-cCCCcEEEEeCChHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTK-FYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~-~~~~d~~l~~lpl~h~~~~ 312 (543)
++...... ..+.....++++++|+|||||||.||||++||+++++.+..+.. ... ...++++++.+|++|++++
T Consensus 181 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~ 259 (560)
T PLN02574 181 ELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGL 259 (560)
T ss_pred HHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHH
Confidence 65544322 12223456789999999999999999999999999887765432 122 2357899999999999998
Q ss_pred HHH-HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 313 ANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 313 ~~~-~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
... +.++..|+++++.+ +++..+++.++++++|+++++|.++..+.+....
T Consensus 260 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 312 (560)
T PLN02574 260 SLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG--------------------------- 312 (560)
T ss_pred HHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc---------------------------
Confidence 774 45778899998877 6999999999999999999999999988653110
Q ss_pred CCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCC--CCCCCCCcCC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE--GDNLSGHVGS 467 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~ 467 (543)
......+++|.+++||+++++++.+.+++.+ +++++++||+||++++.+.... .....+++|.
T Consensus 313 --------------~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~ 378 (560)
T PLN02574 313 --------------VCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGL 378 (560)
T ss_pred --------------cccCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceee
Confidence 0000125899999999999999999999888 6899999999999865543221 2245689999
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|.++++++|+|+++++.++.++ .|||||+|++++.|||++++.|++.|+.+|||+|||+|++|+||+++|+||
T Consensus 379 ~~~~~~v~i~d~~~g~~~~~g~---~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR 451 (560)
T PLN02574 379 LAPNMQAKVVDWSTGCLLPPGN---CGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDR 451 (560)
T ss_pred eCCCcEEEEEeCCCCcCCCCCC---CeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEec
Confidence 9999999999987888777776 899999999999999999999999998899999999999999999999998
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-54 Score=462.53 Aligned_cols=402 Identities=22% Similarity=0.311 Sum_probs=326.9
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.+..+|+++|+... +...+..+.+||+||++++.++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 97 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLA 97 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 368999999999999999998763 21222346799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
|+++|+++||+++.++.+++.++++.++++++|++.... ..+.......+..+.++..+...
T Consensus 98 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 164 (538)
T TIGR03208 98 CARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG------------- 164 (538)
T ss_pred HHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------
Confidence 999999999999999999999999999999999987542 22223333345556666664321
Q ss_pred eeeHHHHHhcCccCC-------CCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCC
Q 009114 233 ILTYSNLLSQGRSNL-------QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~-------~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lp 305 (543)
...|++++....... .......++++++|+|||||||.||||+++|+++.+.+......+.+..+|++++++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p 244 (538)
T TIGR03208 165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASP 244 (538)
T ss_pred CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCC
Confidence 112333332211100 1112356799999999999999999999999999998887777778889999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 009114 306 LAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (543)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (543)
++|.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......
T Consensus 245 l~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~------------------- 305 (538)
T TIGR03208 245 MAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKES------------------- 305 (538)
T ss_pred chhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhcc-------------------
Confidence 999998876 567899999998876 68999999999999999999999998876532110
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC--CC
Q 009114 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--NL 461 (543)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~--~~ 461 (543)
+ ...+++|.+++||+++++++.+++...+++++++.||+||++++.+...... ..
T Consensus 306 ------~-----------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 362 (538)
T TIGR03208 306 ------G-----------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKA 362 (538)
T ss_pred ------C-----------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhc
Confidence 0 0014899999999999999999999989999999999999977665443221 22
Q ss_pred CCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEe
Q 009114 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 462 ~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~ 541 (543)
..++|.|+++++++|+| +++...+.++ .|||+|+|+.++.||+++|+.|+ ++.+|||+|||+|++|++|+++++
T Consensus 363 ~~~~G~~~~g~~v~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~ 436 (538)
T TIGR03208 363 STTDGRPLPGVEVKVID-ANGAKLSQGE---TGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRIN 436 (538)
T ss_pred cCcccccCCCCEEEEEC-CCCCCCcCCC---CcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEE
Confidence 46799999999999999 5566666665 89999999999999999999875 457899999999999999999999
Q ss_pred cC
Q 009114 542 DR 543 (543)
Q Consensus 542 gR 543 (543)
||
T Consensus 437 gR 438 (538)
T TIGR03208 437 GR 438 (538)
T ss_pred ec
Confidence 98
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-54 Score=460.00 Aligned_cols=405 Identities=28% Similarity=0.424 Sum_probs=343.8
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
+..++.++|++.++.+|+++|+.+. + +.+||+||++++.++|+.|.+.|+++||+|+++++|+++++++++
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~l 73 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAAL 73 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4578999999999999999999764 2 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+.+..+++++++++++++......+.......+.++.++......... ......+|
T Consensus 74 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 147 (513)
T PRK07656 74 GALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP------HTEKMKTF 147 (513)
T ss_pred HHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc------CccccccH
Confidence 999999999999999999999999999999999999887776666555556666666655432211 01133567
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-H
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-Q 315 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~-~ 315 (543)
+++...... ..+.....++++++|+|||||||.||+|.++|+++...+......+.+.++|++++.+|++|.+++.. .
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (513)
T PRK07656 148 TDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGV 226 (513)
T ss_pred HHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHH
Confidence 777654332 12334467899999999999999999999999999988877777788999999999999999999876 5
Q ss_pred HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 009114 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (543)
Q Consensus 316 ~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (543)
+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.......
T Consensus 227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------ 276 (513)
T PRK07656 227 NAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRS------------------------------ 276 (513)
T ss_pred HHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcC------------------------------
Confidence 67899999998866 68999999999999999999999999886531100
Q ss_pred chhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCC-ccccccChhhhccccccCCCCC---CCCCCcCCCCC
Q 009114 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGD---NLSGHVGSPNA 470 (543)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~~ 470 (543)
....+++|.+++||+++++++.+.++..+++ ++++.||+||++++.+...... ...+++|.|++
T Consensus 277 ------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~ 344 (513)
T PRK07656 277 ------------AEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIA 344 (513)
T ss_pred ------------CCCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCC
Confidence 0011589999999999999999999999998 8999999999987776554433 22678999999
Q ss_pred CeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 471 ~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++++|+| ++++.++.+. .|||+++|+.++.||+++++.+++.+..+|||+|||+|+++++|.++++||
T Consensus 345 ~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR 413 (513)
T PRK07656 345 GVENKIVN-ELGEEVPVGE---VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDR 413 (513)
T ss_pred CcEEEEEC-CCCCCCCCCC---ceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEec
Confidence 99999999 6677777776 899999999999999999999999997799999999999999999999998
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=463.54 Aligned_cols=393 Identities=22% Similarity=0.273 Sum_probs=323.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.++.++|.+.++++||++|+... ++ .+||+||.++++++|++|.++|+++|++|+++++|+++|+++++||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~~------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---LG------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---CC------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999653 22 4999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|+++||+++.++.+++.+++++++++++|++.+....+.......+....++.+++.. ....+++
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 181 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED------------HDLTVEV 181 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc------------ccccHHH
Confidence 9999999999999999999999999999999999877666655433334333344332211 0134555
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~ 318 (543)
+...... ......+++.++++|||||||.||||+++|++++...........+..+|++++.+|++|.+++...+.+
T Consensus 182 ~~~~~~~---~~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 258 (537)
T PRK13382 182 LIAAHAG---QRPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLA 258 (537)
T ss_pred HhhccCc---CCCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHH
Confidence 5443221 1112346889999999999999999999999988877776666778899999999999999999777888
Q ss_pred HHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 009114 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (543)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (543)
+..|+++++.. +++..+++.|+++++|++.++|+++..+.+......
T Consensus 259 l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------------------------- 306 (537)
T PRK13382 259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVR-------------------------------- 306 (537)
T ss_pred HhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhc--------------------------------
Confidence 99999988876 789999999999999999999999998865211000
Q ss_pred hHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC-CCCCCCCcCCCCCCeEEEE
Q 009114 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKL 476 (543)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~evki 476 (543)
....+.++|.+++||+++++++.+.+.+.++.+++++||+||++.+++.... .....+++|.|+++++++|
T Consensus 307 --------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i 378 (537)
T PRK13382 307 --------NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRI 378 (537)
T ss_pred --------ccCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEE
Confidence 0001148999999999999999999999999999999999999876654322 1245679999999999999
Q ss_pred eecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 477 vd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+| ++++..+.++ .|||+++|++++.||+ ++.|++ + .+|||+|||++++++||+++|.||
T Consensus 379 ~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR 437 (537)
T PRK13382 379 LD-QDFREVPTGE---VGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGR 437 (537)
T ss_pred EC-CCCCCCCCCC---eeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEecc
Confidence 99 5667777666 8999999999999998 566654 3 379999999999999999999998
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-54 Score=471.93 Aligned_cols=418 Identities=16% Similarity=0.172 Sum_probs=326.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...+..+++|++.++.+||++|+.+. +...+..+.+||+||.+++.++|++|+++|+++||+|+++++|++||++++
T Consensus 50 ~~~n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 126 (629)
T PRK10524 50 GRTNLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAM 126 (629)
T ss_pred cEeeHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 34566789999988899999999775 333334577999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC---------HHHHHhhccCC-CCeeEEEEeCCCCCCCCCC
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEV-PTVRLIVVIGGIDDQIPSL 225 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~-~~l~~ii~~~~~~~~~~~~ 225 (543)
+||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.++.... +....+++++......
T Consensus 127 lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 203 (629)
T PRK10524 127 LACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM--- 203 (629)
T ss_pred HHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc---
Confidence 9999999999999999999999999999999999997642 23333332222 2344566655321110
Q ss_pred CcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEeC
Q 009114 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYL 304 (543)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~l 304 (543)
.........|.++.........+.....++|+++|+|||||||.||||+++|++++..... ....+.+.++|++++++
T Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 282 (629)
T PRK10524 204 -ARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCAS 282 (629)
T ss_pred -CcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcC
Confidence 0001112456666543222222233356789999999999999999999999997654433 33346788999999999
Q ss_pred ChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHH
Q 009114 305 PLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (543)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 378 (543)
|+.|+++... .+.+++.|++++++.+ ++..+++.++++++|++.++|+++..+.+.-...
T Consensus 283 ~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 348 (629)
T PRK10524 283 DIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL-------------- 348 (629)
T ss_pred CCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc--------------
Confidence 9999988654 5678999999998863 6788999999999999999999998765420000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC-
Q 009114 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE- 457 (543)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~- 457 (543)
.+....+++|.+++||+++++++.+++++.+++++++.||+||++..+.....
T Consensus 349 --------------------------~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~ 402 (629)
T PRK10524 349 --------------------------LRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARG 402 (629)
T ss_pred --------------------------ccccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCC
Confidence 00011158999999999999999999999999999999999999743332222
Q ss_pred ---CCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCc---cchhhhcCChhhhhhhc---CCCCeeeccc
Q 009114 458 ---GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVI---DEDGWFHTGD 528 (543)
Q Consensus 458 ---~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~---~v~~gY~~~~~~t~~~~---~~~gw~~TGD 528 (543)
.....+++|.|+++++++|+|.+++..++.++ .|||+|+|| +++.|||++++.+.+.+ ..+|||+|||
T Consensus 403 ~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~---~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD 479 (629)
T PRK10524 403 VEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNE---KGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFD 479 (629)
T ss_pred cccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCC---cEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCC
Confidence 12446889999999999999954777777666 899999998 68899999999888764 2468999999
Q ss_pred eEEEecCCcEEEecC
Q 009114 529 IGMWIPGGRLKIIDR 543 (543)
Q Consensus 529 ig~~~~~G~l~i~gR 543 (543)
+|++|+||+++|+||
T Consensus 480 l~~~d~dG~l~i~GR 494 (629)
T PRK10524 480 WGIRDADGYYFILGR 494 (629)
T ss_pred cEEEcCCCcEEEEEE
Confidence 999999999999998
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=471.29 Aligned_cols=399 Identities=20% Similarity=0.252 Sum_probs=310.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecC---cccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDG---TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL 152 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~ 152 (543)
+...|+.++|++.++++|+++++... +. ..+..+.+||+||.++++++|++|.+. +++||+|+|+++|++||+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~ 106 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYV 106 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHH
Confidence 35578999999999999999999765 31 123456799999999999999999987 999999999999999999
Q ss_pred HHHHHHHhcCCeEEec-CCCCC--HHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCC--eeEEEEeCCCCCCCCCCCc
Q 009114 153 IVDHACSAYSFISVPL-YDTLG--PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPI 227 (543)
Q Consensus 153 i~~lA~~~~G~~~vpl-~~~l~--~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--l~~ii~~~~~~~~~~~~~~ 227 (543)
++++||+++|+++||+ ++.++ ++++.+++++++++++|++....+.+.+.....+. ...++.+++..+
T Consensus 107 ~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------- 179 (612)
T PRK12476 107 AGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD------- 179 (612)
T ss_pred HHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc-------
Confidence 9999999999999999 46666 78999999999999999998776655444333322 123444433110
Q ss_pred CCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcc-cCCCcEEEEeCCh
Q 009114 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK-FYPSDVYISYLPL 306 (543)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~~~~d~~l~~lpl 306 (543)
.. ..........++|+++|+|||||||.||||++||+++++.+......+. +.++|++++++|+
T Consensus 180 --------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl 244 (612)
T PRK12476 180 --------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPL 244 (612)
T ss_pred --------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCc
Confidence 00 0011122346789999999999999999999999999887766555566 7889999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEec-----CChHhHHHHHH--hhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHH
Q 009114 307 AHIYERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMA--ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (543)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~i~~~~-----~~~~~l~~~i~--~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a 379 (543)
+|.+++...+.+++.|+++++.. .++..+++.++ ++++|+++.+|.++..+....... .
T Consensus 245 ~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~--~------------ 310 (612)
T PRK12476 245 YHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLP--A------------ 310 (612)
T ss_pred ccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcCh--h------------
Confidence 99999987666655566655543 27888999995 489999999999988775420000 0
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh---CC---ccccccChhhhccccc
Q 009114 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF---GG---RVTEGYGMTETSCLIS 453 (543)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~---~~---~i~~~YG~TE~~~~~~ 453 (543)
.. ..+| .+++| +++||+++++++.+.+++.| |+ .+++.||+||++..++
T Consensus 311 ---------~~----~~~~-----------l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~ 365 (612)
T PRK12476 311 ---------EG----DDID-----------LSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVA 365 (612)
T ss_pred ---------hh----cCcc-----------hhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeee
Confidence 00 0000 14789 99999999999999999987 44 4899999999876544
Q ss_pred cCCCCC---------------------------CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhh
Q 009114 454 QLDEGD---------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (543)
Q Consensus 454 ~~~~~~---------------------------~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~g 506 (543)
...+.+ ...+++|+|+++++++|+|.++++.++.++ .||||++|++++.|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~---~GEl~v~g~~v~~G 442 (612)
T PRK12476 366 TIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGE---VGEIWLHGDNIGRG 442 (612)
T ss_pred ccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCC---EEEEEEcCCccccc
Confidence 322211 113579999999999999955477777776 89999999999999
Q ss_pred hcCChhhhhhhcC------------------CCCeeeccceEEEecCCcEEEecC
Q 009114 507 YYKDEIQTKEVID------------------EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 507 Y~~~~~~t~~~~~------------------~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
||++|+.|++.|. .++||+|||+|+++ ||+|+|+||
T Consensus 443 Y~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~i~GR 496 (612)
T PRK12476 443 YWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELYITGR 496 (612)
T ss_pred ccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEEEEec
Confidence 9999999999984 23599999999985 999999998
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-54 Score=461.95 Aligned_cols=417 Identities=23% Similarity=0.325 Sum_probs=333.0
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHc
Q 009114 54 GKWNVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH 133 (543)
Q Consensus 54 ~~~~i~R~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~ 133 (543)
....+||+...... .+...|+.++|.+.++++|+++|+... .+. +.+||+||.+++.++|..|.+.
T Consensus 10 ~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~ 75 (546)
T PLN02330 10 DNEHIFRSRYPSVP-------VPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSL 75 (546)
T ss_pred ccceeeccCCCCCC-------CCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHh
Confidence 34567777754431 235688999999999999999998653 211 3599999999999999999999
Q ss_pred CCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEE
Q 009114 134 GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIV 213 (543)
Q Consensus 134 g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii 213 (543)
|+++||+|+++++|+++|+++++||+++|++++|+++..+.+++.+++++++++++++++.....+.... +. ++
T Consensus 76 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~~-~i 149 (546)
T PLN02330 76 GLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----LP-VI 149 (546)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----Cc-EE
Confidence 9999999999999999999999999999999999999999999999999999999999988776664321 22 33
Q ss_pred EeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCC--CCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC
Q 009114 214 VIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291 (543)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~ 291 (543)
.++... ......|++++....... .+.....++++++|+|||||||.||||+++|+++...+......
T Consensus 150 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~ 219 (546)
T PLN02330 150 VLGEEK----------IEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFS 219 (546)
T ss_pred EecCCC----------CCCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhc
Confidence 333211 012345777765433211 12233557899999999999999999999999998776543221
Q ss_pred cc--cCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhc
Q 009114 292 TK--FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (543)
Q Consensus 292 ~~--~~~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~ 367 (543)
.. ....++.+..+|++|.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|.++..+......
T Consensus 220 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---- 295 (546)
T PLN02330 220 VGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIV---- 295 (546)
T ss_pred cCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccc----
Confidence 11 224578999999999999876 456788999988876 7999999999999999999999999887542000
Q ss_pred cCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChh
Q 009114 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMT 446 (543)
Q Consensus 368 ~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~T 446 (543)
+...+. ..++|.+++||+++++++.++++..| ++++++.||+|
T Consensus 296 ------------------------------~~~~~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~t 339 (546)
T PLN02330 296 ------------------------------EEFDLS------KLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLT 339 (546)
T ss_pred ------------------------------cccccc------hheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccc
Confidence 000000 02589999999999999999999998 89999999999
Q ss_pred hhccccccCC-CC----CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCC
Q 009114 447 ETSCLISQLD-EG----DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED 521 (543)
Q Consensus 447 E~~~~~~~~~-~~----~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~ 521 (543)
|++++..... +. ....+++|.|+++++++|+|+++++.++.++ .|||+|+|+.++.||+++++.+++.++.+
T Consensus 340 E~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~ 416 (546)
T PLN02330 340 EHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNT---PGELCVRSQCVMQGYYNNKEETDRTIDED 416 (546)
T ss_pred ccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCC---ceEEEEecchhhhhhccCccchhhhccCC
Confidence 9875543221 11 1334689999999999999977777777776 89999999999999999999999999999
Q ss_pred CeeeccceEEEecCCcEEEecC
Q 009114 522 GWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 522 gw~~TGDig~~~~~G~l~i~gR 543 (543)
|||+|||+|++++||+++|+||
T Consensus 417 g~~~TGD~~~~~~dG~l~~~GR 438 (546)
T PLN02330 417 GWLHTGDIGYIDDDGDIFIVDR 438 (546)
T ss_pred CceecccEEEEeCCCcEEEEec
Confidence 9999999999999999999998
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=458.66 Aligned_cols=399 Identities=22% Similarity=0.284 Sum_probs=328.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+|+.++|++.++++||++|+... + +.+||+||.+++.++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~l 89 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFL 89 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 5678999999999999999999664 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+++..+++++++++++++.+....+.+.......++.++.++..... ....... .
T Consensus 90 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~ 162 (542)
T PRK06155 90 GCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASV----SVPAGWS---T 162 (542)
T ss_pred HHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCcccc----ccccccc---h
Confidence 99999999999999999999999999999999999988777766554433345566666543210 0000100 1
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~ 316 (543)
.++... ..........++++++|+|||||||.||||+++|+++..........+.+.++|++++.+|++|.+++...+
T Consensus 163 ~~~~~~--~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~ 240 (542)
T PRK06155 163 APLPPL--DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF 240 (542)
T ss_pred hhhccc--CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHH
Confidence 111111 111122335678999999999999999999999999988777666667889999999999999999998888
Q ss_pred HHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 009114 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (543)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (543)
.+++.|+++++.+ .++..+++.|+++++|++..+|.++..+.+....
T Consensus 241 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~-------------------------------- 288 (542)
T PRK06155 241 QALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR-------------------------------- 288 (542)
T ss_pred HHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc--------------------------------
Confidence 8999999999877 6899999999999999999999999877542100
Q ss_pred hhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEE
Q 009114 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (543)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evk 475 (543)
+....+++|.++.|| +++++.+.+++.+++++++.||+||++..+.... .....+++|.|.++++++
T Consensus 289 ----------~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~ 355 (542)
T PRK06155 289 ----------ESDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEAR 355 (542)
T ss_pred ----------cccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEE
Confidence 000115789888776 5788999999999999999999999987665533 345678899999999999
Q ss_pred EeecCCCCCCCCCCCCCCceEEEeCc---cchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 476 LVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 476 ivd~~~~~~~~~~~p~~~GEi~v~g~---~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+| ++++.++.+. .|||+++|+ +++.||+++++.|++.| .+|||+|||+|++++||+++|+||
T Consensus 356 i~d-~~~~~~~~g~---~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR 421 (542)
T PRK06155 356 VVD-EHDQELPDGE---PGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDR 421 (542)
T ss_pred EEC-CCCCCCCCCC---ceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEec
Confidence 999 5567677665 899999998 69999999999999998 699999999999999999999998
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=456.63 Aligned_cols=408 Identities=24% Similarity=0.300 Sum_probs=330.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+|++++|++.++++||++|+.+. +. .++++.+||.||.++++++|++|.++|+++||+|+|+++|+.+|+++++
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~l 80 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWF 80 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999775 43 2445779999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccC-CCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE-VPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~-~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
||+++|++++|+++.++.+++.+++++++++.+|++.+..+.+.++... ...++.++..+..... ...+.+
T Consensus 81 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 152 (517)
T PRK08008 81 GLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSS 152 (517)
T ss_pred HHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccC
Confidence 9999999999999999999999999999999999998877766655433 2345556655442111 112345
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~- 314 (543)
++++............+..++++++|+|||||||.||||++||+|+............+.++|++++.+|++|..+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 232 (517)
T PRK08008 153 FTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA 232 (517)
T ss_pred HHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHH
Confidence 6655443322222233456789999999999999999999999999865443333345788999999999999877665
Q ss_pred HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
.+.++..|+++++.+ .++..+++.++++++|++.++|.++.++.......
T Consensus 233 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------- 283 (517)
T PRK08008 233 AMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA----------------------------- 283 (517)
T ss_pred HHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc-----------------------------
Confidence 566888999999887 68999999999999999999999998775420000
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-CCCCCCcCCCCCCe
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAAC 472 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ 472 (543)
.....++|.+.++ .+++++....+++.+++++++.||+||+++.++...+. ....+++|.|++++
T Consensus 284 -------------~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~ 349 (517)
T PRK08008 284 -------------NDRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCY 349 (517)
T ss_pred -------------ccccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCc
Confidence 0001367777665 48899999999998999999999999998655544332 24457899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCceEEEeC---ccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 473 EIKLVDVPEMNYTSEDQPCPRGEICVRG---PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 473 evkivd~~~~~~~~~~~p~~~GEi~v~g---~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++|+| ++++.++.++ .|||+++| ++++.|||++++.|++.|+.+|||+|||+|++|+||+++|+||
T Consensus 350 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR 419 (517)
T PRK08008 350 EAEIRD-DHNRPLPAGE---IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDR 419 (517)
T ss_pred EEEEEC-CCCCCCCCCC---cceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeec
Confidence 999999 5667777776 89999998 6899999999999999998899999999999999999999998
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=461.46 Aligned_cols=413 Identities=24% Similarity=0.330 Sum_probs=332.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
.|+.++|++.+..+||+.++.+. + .+.+.+||+|+.+++.++|.+|.+ .|+++||+|+++++|+++|+++++|
T Consensus 10 ~~~~~~l~~~a~~~~~~~a~~~~----~--~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA 83 (576)
T PRK05620 10 LSLTRILEYGSTVHGDTTVTTWG----G--AEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFA 83 (576)
T ss_pred CcHHHHHHHHHHhCCCceEEEEc----C--CceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 58999999999999999998653 1 124679999999999999999986 7999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|++++|+++.++.+++.++++.++++++|++....+.+.+....++.++.++.++................+.+|+
T Consensus 84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (576)
T PRK05620 84 VACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYE 163 (576)
T ss_pred HHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHH
Confidence 99999999999999999999999999999999999888777776666666677777665422111111111233567788
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhh--hcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
++.+.... ..+.....++++++++|||||||.||||+++|+++....... ...+.+.++|++++.+|++|.+++...
T Consensus 164 ~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~ 242 (576)
T PRK05620 164 ALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVP 242 (576)
T ss_pred HHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHH
Confidence 88764322 222334567999999999999999999999999986554432 223667889999999999999999888
Q ss_pred HHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 316 VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 316 ~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+.++..|+++++.. .++..+++.++++++|++.++|.++..+........
T Consensus 243 ~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------- 294 (576)
T PRK05620 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---------------------------- 294 (576)
T ss_pred HHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC----------------------------
Confidence 88999999998875 689999999999999999999999988765311000
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC--------CCCCCc
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD--------NLSGHV 465 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~--------~~~~~v 465 (543)
.+ ..++|.+++||+++++++.+.++..+++++++.||+||++..++...+.+ ....++
T Consensus 295 ---~~-----------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (576)
T PRK05620 295 ---PE-----------RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQ 360 (576)
T ss_pred ---cc-----------cCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccccccccccccc
Confidence 00 03799999999999999999999999999999999999987655433221 113478
Q ss_pred CCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhh----------------hhhcCCCCeeeccce
Q 009114 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQT----------------KEVIDEDGWFHTGDI 529 (543)
Q Consensus 466 G~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t----------------~~~~~~~gw~~TGDi 529 (543)
|++.++++++++|. ++..+. .+...|||+++|+.++.|||++++.| .+.++.+|||+|||+
T Consensus 361 G~~~~~~~~~i~~~--g~~~~~-~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~ 437 (576)
T PRK05620 361 GRFPASLEYRIVND--GQVMES-TDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDV 437 (576)
T ss_pred CCcCCceeEEEecC--CccccC-CCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCce
Confidence 99999999999994 333221 11137999999999999999999988 344567899999999
Q ss_pred EEEecCCcEEEecC
Q 009114 530 GMWIPGGRLKIIDR 543 (543)
Q Consensus 530 g~~~~~G~l~i~gR 543 (543)
|++++||+++|+||
T Consensus 438 ~~~~~dg~l~~~GR 451 (576)
T PRK05620 438 GSVTRDGFLTIHDR 451 (576)
T ss_pred EEEcCCceEEEEec
Confidence 99999999999998
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=479.94 Aligned_cols=394 Identities=23% Similarity=0.295 Sum_probs=309.7
Q ss_pred CCCCCHHHHHHHHHHhcCC-CccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
....|++++|.+.++++|+ +.++... .++++||+||.++++++|++|.+. +++||+|+|+++|++||+++
T Consensus 201 ~~~~t~~~~l~~~~~~~p~~~~a~~~~--------~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~ 271 (718)
T PRK08043 201 RPRETLYEALLSAQYRYGAGKPCIEDV--------NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAV 271 (718)
T ss_pred CCCCCHHHHHHHHHHHhCCCCcceEcC--------CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHH
Confidence 3558999999999999998 5777431 124699999999999999999987 59999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHH--HhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l--~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
++||+++|+++||+++.++++++.+++++++++++|++.+..+.. ......++.++.+ .+++....
T Consensus 272 ~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~----------- 339 (718)
T PRK08043 272 IFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWV-YLEDLKDD----------- 339 (718)
T ss_pred HHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEE-Ehhhhhhh-----------
Confidence 999999999999999999999999999999999999987654321 1111112222222 22221100
Q ss_pred eeeHHHH--H-hcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHH
Q 009114 233 ILTYSNL--L-SQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHI 309 (543)
Q Consensus 233 ~~~~~~l--~-~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~ 309 (543)
..+.+. . ..............++|+++|+|||||||.||||++||+|+++.+........++++|++++.+|++|+
T Consensus 340 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~ 418 (718)
T PRK08043 340 -VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHS 418 (718)
T ss_pred -cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhh
Confidence 011110 0 000000111223567999999999999999999999999999888777666788999999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 310 YERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 310 ~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
+++.. .+.+++.|+++++.+ .+...+.+.+.++++|+++++|.++..+.... .
T Consensus 419 ~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~-----~------------------- 474 (718)
T PRK08043 419 FGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA-----N------------------- 474 (718)
T ss_pred hhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc-----C-------------------
Confidence 99876 567899999999876 46678889999999999999999987653310 0
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcC
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (543)
. +| .+++|.+++||+++++++.+.++..||++++++||+||+++.++...+.+...+++|
T Consensus 475 ---~------~~-----------~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG 534 (718)
T PRK08043 475 ---P------YD-----------FARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVG 534 (718)
T ss_pred ---c------cc-----------ccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCC
Confidence 0 01 158999999999999999999999999999999999999876665544455678999
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcC--Chhh-------hhhhcCCCCeeeccceEEEecCCc
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK--DEIQ-------TKEVIDEDGWFHTGDIGMWIPGGR 537 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~--~~~~-------t~~~~~~~gw~~TGDig~~~~~G~ 537 (543)
+|+|+++++|+|.++ .+ +.||||++|++++.|||+ +++. +.+.+..+|||+|||+|++|+||+
T Consensus 535 ~p~pg~~~~i~d~~~-----~~---~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~ 606 (718)
T PRK08043 535 RILPGMDARLLSVPG-----IE---QGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGF 606 (718)
T ss_pred CcCCCCeeEEecCCC-----CC---CceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCc
Confidence 999999999998432 12 269999999999999998 4552 333344689999999999999999
Q ss_pred EEEecC
Q 009114 538 LKIIDR 543 (543)
Q Consensus 538 l~i~gR 543 (543)
++|+||
T Consensus 607 l~i~GR 612 (718)
T PRK08043 607 VQIQGR 612 (718)
T ss_pred EEEEec
Confidence 999998
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=462.79 Aligned_cols=411 Identities=25% Similarity=0.375 Sum_probs=321.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...++.++|.+.++++|+++|+... + +.+||.||.++++++|++|.+. |+++||+|+++++|++||++++
T Consensus 22 ~~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~ 92 (562)
T PRK12492 22 AYKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAV 92 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence 3468999999999999999998653 2 3599999999999999999985 9999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeC--CCCCCCC----------
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIG--GIDDQIP---------- 223 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~--~~~~~~~---------- 223 (543)
+||+++|++++|+++.++.+++.++++++++++++++....+.+....... ..+.++... +......
T Consensus 93 la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 93 FGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred HHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhccccccchhccccccc
Confidence 999999999999999999999999999999999999876555444332221 112121110 0000000
Q ss_pred --C-CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcc-------
Q 009114 224 --S-LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK------- 293 (543)
Q Consensus 224 --~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~------- 293 (543)
. ..........+|+++...+...........++++++|+|||||||.||||+++|+++...+......+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ 251 (562)
T ss_pred ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence 0 000001123467776654433222233456789999999999999999999999999877654433221
Q ss_pred --cCC-CcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhc
Q 009114 294 --FYP-SDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (543)
Q Consensus 294 --~~~-~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~ 367 (543)
+.. ++++++.+|++|++++.. .+..+..|+..++.. .++..+++.++++++|++.++|.++..+.....
T Consensus 252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----- 326 (562)
T PRK12492 252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG----- 326 (562)
T ss_pred ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence 223 357899999999999876 445677888766553 588899999999999999999999988754200
Q ss_pred cCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhh
Q 009114 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTE 447 (543)
Q Consensus 368 ~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE 447 (543)
.+.....++|.+++||+++++++.+.++..++++++++||+||
T Consensus 327 -------------------------------------~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE 369 (562)
T PRK12492 327 -------------------------------------FKDLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTE 369 (562)
T ss_pred -------------------------------------cccccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccc
Confidence 0001125899999999999999999999989999999999999
Q ss_pred hccccccCCCCC-CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeec
Q 009114 448 TSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (543)
Q Consensus 448 ~~~~~~~~~~~~-~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~T 526 (543)
++++++.....+ ...+++|.|+++++++|+| +++..++.++ .|||+|+|+.++.|||++|+.|++.|+.+|||+|
T Consensus 370 ~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~T 445 (562)
T PRK12492 370 TSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLGE---RGELCIKGPQVMKGYWQQPEATAEALDAEGWFKT 445 (562)
T ss_pred cCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCCC---ceEEEEeCCccccccccCchhhhhcccCCCceec
Confidence 987665543322 3457899999999999999 5667777666 8999999999999999999999999988999999
Q ss_pred cceEEEecCCcEEEecC
Q 009114 527 GDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 527 GDig~~~~~G~l~i~gR 543 (543)
||+|++|++|+++|.||
T Consensus 446 GD~g~~~~~G~l~i~GR 462 (562)
T PRK12492 446 GDIAVIDPDGFVRIVDR 462 (562)
T ss_pred CcEEEECCCCeEEEecc
Confidence 99999999999999998
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=459.68 Aligned_cols=406 Identities=22% Similarity=0.282 Sum_probs=316.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.+...|+.++|++.++++||+.|+.+. ++. +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 84 (534)
T PRK05852 12 SDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA 84 (534)
T ss_pred hhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHH
Confidence 457789999999999999999999764 332 4599999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|++++|+++.++.+++.+++++++++.+|++............. .....+.+..... . ..+....
T Consensus 85 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-----~~~~~~~ 156 (534)
T PRK05852 85 LLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTR--WWPLTVNVGGDSG-P-----SGGTLSV 156 (534)
T ss_pred HHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhcccccc--ccceeeeeccccc-c-----ccccccc
Confidence 999999999999999999999999999999999999986533211110000 0111112211100 0 0000000
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 009114 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
.+.+... . ..........++|+++|+|||||||.||||+++|+++...+......+.+.++|++++.+|++|.+++..
T Consensus 157 ~~~~~~~-~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 234 (534)
T PRK05852 157 HLDAATE-P-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIA 234 (534)
T ss_pred ccccccC-C-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHH
Confidence 1111100 0 0001111223578899999999999999999999999988887777778899999999999999999987
Q ss_pred -HHHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 315 -QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 315 -~~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
.+.+++.|+++++.. .++..+++.++++++|+++++|.++..+.+......
T Consensus 235 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------- 289 (534)
T PRK05852 235 ALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP------------------------- 289 (534)
T ss_pred HHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc-------------------------
Confidence 556788888888754 578899999999999999999999998866321100
Q ss_pred CCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--------CCCC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--------DNLS 462 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--------~~~~ 462 (543)
.....+++|.+.+||+++++++.+.+++.|+++++++||+||++..++..... ....
T Consensus 290 ---------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~ 354 (534)
T PRK05852 290 ---------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST 354 (534)
T ss_pred ---------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCccccc
Confidence 00011589999999999999999999999999999999999998765543221 1123
Q ss_pred CCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEec
Q 009114 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (543)
Q Consensus 463 ~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~g 542 (543)
+.+|. .++++++++| ++++.++.++ .|||+|+|+.+++|||++++.|++.| .+|||+|||+|++|+||++++.|
T Consensus 355 g~~g~-~~g~~~~i~d-~~g~~~~~g~---~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~g 428 (534)
T PRK05852 355 GLVGR-STGAQIRIVG-SDGLPLPAGA---VGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRG 428 (534)
T ss_pred ccCCC-CCCCeEEEEC-CCCCCCCCCC---ceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEe
Confidence 34444 6999999999 5566666665 89999999999999999999999999 68999999999999999999999
Q ss_pred C
Q 009114 543 R 543 (543)
Q Consensus 543 R 543 (543)
|
T Consensus 429 R 429 (534)
T PRK05852 429 R 429 (534)
T ss_pred c
Confidence 8
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=463.81 Aligned_cols=400 Identities=21% Similarity=0.273 Sum_probs=310.1
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.+.|.+.++++|+++|+... ++. +.+||+||.++++++|++|.+.|+++|++|+|+++|++||+++++|
T Consensus 13 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA 85 (540)
T PRK05857 13 PSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLA 85 (540)
T ss_pred CcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHH
Confidence 458899999999999999999654 442 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|++++|+++.++.+++.++++.++++.+|++.........+......+. ++.++..... . . +.
T Consensus 86 ~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~---~-~~ 152 (540)
T PRK05857 86 CAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVT--------R---E-SE 152 (540)
T ss_pred HHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeeccccc--------c---c-cc
Confidence 99999999999999999999999999999999998764322111111112222 2222221100 0 0 00
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh----cCcccCCCcEEEEeCChHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT----LGTKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~----~~~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
+.... ..........++++++++|||||||.||||++||+++.+.+.... ..+.+..+++.++.+|++|.+++.
T Consensus 153 ~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~ 230 (540)
T PRK05857 153 HSLDA--ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW 230 (540)
T ss_pred ccccc--cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHH
Confidence 00000 001112334678999999999999999999999999987654322 124566789999999999999998
Q ss_pred HHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 314 NQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 314 ~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
..+.+++.|+++++.+.++..+++.++++++|+++++|.++..+.......
T Consensus 231 ~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~----------------------------- 281 (540)
T PRK05857 231 WILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA----------------------------- 281 (540)
T ss_pred HHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC-----------------------------
Confidence 778889999998876688999999999999999999999998886531100
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-----CCCCCcCCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGSP 468 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p 468 (543)
....+++|.+++||++++....++++ .+++++++.||+||++.........+ ...+++|+|
T Consensus 282 -------------~~~~~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~ 347 (540)
T PRK05857 282 -------------NATVPSLRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRP 347 (540)
T ss_pred -------------CCcCccceEEEEcCccCCchhHHHHH-HhCCeeecccCCCcCCceeeecccccccccccccCCcCcc
Confidence 00115899999999999988876554 67999999999999875433222111 245789999
Q ss_pred CCCeEEEEeecCCCCCCCCC--CCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 469 NAACEIKLVDVPEMNYTSED--QPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 469 ~~~~evkivd~~~~~~~~~~--~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++++++|+|.++....+.+ ...+.|||||+|++++.|||++++.|++.| .+|||+|||+|++|++|+++|.||
T Consensus 348 ~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR 423 (540)
T PRK05857 348 YPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGR 423 (540)
T ss_pred cCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEecc
Confidence 99999999994433232221 112489999999999999999999999999 689999999999999999999998
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=455.75 Aligned_cols=399 Identities=21% Similarity=0.257 Sum_probs=323.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++|+++|+... + +.+||+||.++++++|.+|.+.|+++|++|+++++|+++|+++++
T Consensus 21 ~~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 91 (527)
T TIGR02275 21 QDKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFF 91 (527)
T ss_pred cCCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 4578999999999999999999543 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHH-----HHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCc
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLN-----SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~-----~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
||+++|++++++++.++.+++.++++.+++++++++..... .........+.++.++....... .
T Consensus 92 a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~- 161 (527)
T TIGR02275 92 ALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV---------E- 161 (527)
T ss_pred HHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC---------c-
Confidence 99999999999999999999999999999999999865321 12222223444555555432110 0
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~ 311 (543)
..+......... ..+.....++++++|+|||||||.||||++||+++...+........++++|++++.+|++|.++
T Consensus 162 --~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~ 238 (527)
T TIGR02275 162 --AELFLWLESPAE-PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYP 238 (527)
T ss_pred --chhhHHhhCcCc-cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhh
Confidence 011111111111 12223456899999999999999999999999999988887777778889999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
+.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+.....
T Consensus 239 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------ 294 (527)
T TIGR02275 239 LSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS------------------------ 294 (527)
T ss_pred hhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcccc------------------------
Confidence 875 567888999998866 68899999999999999999999998776532110
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCC-CCCCCCCCcCC
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGS 467 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~ 467 (543)
.....++|.+++||+++++++.+.+++.+++++++.||+||++....... ..+...+++|.
T Consensus 295 ------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 356 (527)
T TIGR02275 295 ------------------RYDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGR 356 (527)
T ss_pred ------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCC
Confidence 00115899999999999999999999999999999999999654332211 12234568999
Q ss_pred CC-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+ ++.+++|+| ++++..+.++ .|||+++|+.++.|||++++.|++.|+.||||+|||+|++++||+++|+||
T Consensus 357 ~~~~~~~v~i~d-~~g~~~~~g~---~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR 429 (527)
T TIGR02275 357 PMSPDDEVRVVD-DHGNPVAPGE---TGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGR 429 (527)
T ss_pred CCCCCceEEEEC-CCCCCCCCCC---ceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEec
Confidence 99 589999999 5566666665 899999999999999999999999999999999999999999999999998
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=460.31 Aligned_cols=410 Identities=27% Similarity=0.364 Sum_probs=328.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++++||++|+.+. +. .+||+||.++++++|++|.++|+++||+|+++++|+++|+++++|
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~---~~------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA 101 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFF---GA------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA 101 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeC---CC------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence 358999999999999999999764 22 489999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCC--------------
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP-------------- 223 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~-------------- 223 (543)
|+++|+++||+++.++.+++.+++++++++++|+++.....+..+.... .++.++.++.......
T Consensus 102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (573)
T PRK05605 102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLLQRLALRLPIPALR 180 (573)
T ss_pred HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeeccccccccccccccccccccc
Confidence 9999999999999999999999999999999999887666555443222 2444544432110000
Q ss_pred ---CCCcCCCceeeeHHHHHhcCccC---CCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC-ccc-C
Q 009114 224 ---SLPITTGVQILTYSNLLSQGRSN---LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKF-Y 295 (543)
Q Consensus 224 ---~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~-~~~-~ 295 (543)
+..........+|+++....... ........++++++|+|||||||.||+|.+||+++...+...... ..+ .
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 260 (573)
T PRK05605 181 KARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGD 260 (573)
T ss_pred ccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCC
Confidence 00001122345677765542211 122234567899999999999999999999999998876543332 222 3
Q ss_pred CCcEEEEeCChHHHHHHHHH-HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHH
Q 009114 296 PSDVYISYLPLAHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRE 373 (543)
Q Consensus 296 ~~d~~l~~lpl~h~~~~~~~-~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~ 373 (543)
.+|++++.+|++|.+++... +.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.+.....
T Consensus 261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--------- 331 (573)
T PRK05605 261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEER--------- 331 (573)
T ss_pred CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCcccc---------
Confidence 47899999999999998764 55788999998876 69999999999999999999999999886531110
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccc
Q 009114 374 RLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS 453 (543)
Q Consensus 374 ~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 453 (543)
+ ...+++|.+++||+++++++.+.+++.+++++++.||+||++++++
T Consensus 332 ----------------~-----------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~ 378 (573)
T PRK05605 332 ----------------G-----------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIV 378 (573)
T ss_pred ----------------C-----------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhh
Confidence 0 0014899999999999999999999988999999999999987766
Q ss_pred cCCCC-CCCCCCcCCCCCCeEEEEeecCC-CCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEE
Q 009114 454 QLDEG-DNLSGHVGSPNAACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (543)
Q Consensus 454 ~~~~~-~~~~~~vG~p~~~~evkivd~~~-~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~ 531 (543)
..... ....+++|.|+++++++|+|.++ +..++.+. .|||+++|+.++.||+++++.|++.| .+|||+|||+|+
T Consensus 379 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~ 454 (573)
T PRK05605 379 GNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE---EGELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVV 454 (573)
T ss_pred cCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCC---eeEEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEE
Confidence 54432 24467899999999999999665 35555555 89999999999999999999999999 577999999999
Q ss_pred EecCCcEEEecC
Q 009114 532 WIPGGRLKIIDR 543 (543)
Q Consensus 532 ~~~~G~l~i~gR 543 (543)
+|++|+++|+||
T Consensus 455 ~~~~g~l~i~gR 466 (573)
T PRK05605 455 MEEDGFIRIVDR 466 (573)
T ss_pred EcCCCcEEEEec
Confidence 999999999998
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=457.63 Aligned_cols=399 Identities=26% Similarity=0.341 Sum_probs=336.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
.-+|+.+.|++.++.+|+++|+.+. +. .+||.||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~~---~~------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~ 85 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRFL---GN------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEeC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4588999999999999999999764 33 39999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+++.+++++++++++|++....+.+.......+.++.++.+++.. .....++
T Consensus 86 a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 155 (542)
T PRK07786 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSS----------DDSVLGY 155 (542)
T ss_pred HHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCC----------cccccCH
Confidence 999999999999999999999999999999999999877766655544456666676665321 1123567
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCccc-CCCcEEEEeCChHHHHHHHHH
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF-YPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~-~~~d~~l~~lpl~h~~~~~~~ 315 (543)
++++...... .+......+++++++|||||||.||||++||+++...+......+.+ ..+|++++.+|++|++++...
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~ 234 (542)
T PRK07786 156 EDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSM 234 (542)
T ss_pred HHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHH
Confidence 7776543322 22234556789999999999999999999999998887766655655 578999999999999999888
Q ss_pred HHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
+.++..|+++++++ .++..+++.++++++|+++++|.++..+........
T Consensus 235 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--------------------------- 287 (542)
T PRK07786 235 LPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP--------------------------- 287 (542)
T ss_pred HHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc---------------------------
Confidence 88999999999865 589999999999999999999999998865311000
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCC--CCCCCcCCCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPN 469 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~ 469 (543)
...++|.+++||+++++++.+.+++.| ++++++.||+||++.+.+.....+ ...+++|.|+
T Consensus 288 ----------------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~ 351 (542)
T PRK07786 288 ----------------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVI 351 (542)
T ss_pred ----------------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccC
Confidence 002699999999999999999999988 789999999999987655433222 3457899999
Q ss_pred CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 470 ~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++++|+| ++++..+.+. .|||+++|+.+++||+++++.|++.| .+|||+|||++++++||.++|+||
T Consensus 352 ~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR 420 (542)
T PRK07786 352 PTVAARVVD-ENMNDVPVGE---VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDR 420 (542)
T ss_pred CCceEEEEC-CCCCCCcCCC---ceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEec
Confidence 999999999 6677777665 89999999999999999999999999 689999999999999999999998
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=456.21 Aligned_cols=401 Identities=21% Similarity=0.298 Sum_probs=330.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++++||++|+... ++ +.+||+|+.+++.++|++|++.|+++||+|+++++|+++|+++++|
T Consensus 22 ~~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA 93 (547)
T PRK06087 22 DASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLA 93 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 368999999999999999998653 33 3489999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCc-----CHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ-----TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~-----~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
|+++|++++|+++.++.+++.++++.+++++++++.. ..+.+.......+.++.++.++...... .
T Consensus 94 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 164 (547)
T PRK06087 94 CLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPAT---------S 164 (547)
T ss_pred HHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCc---------C
Confidence 9999999999999999999999999999999999753 2334444444556666677766533111 1
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~ 312 (543)
..++.++....... .......++|+++|+|||||||.||+|++||++++...........+.++|++++.+|++|.+++
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 243 (547)
T PRK06087 165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGF 243 (547)
T ss_pred ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHH
Confidence 23456655432221 12233567899999999999999999999999998887776666778899999999999999998
Q ss_pred HH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 313 AN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 313 ~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
.. .+.+++.|+++++.. .++..+++.+.++++|+++++|..+..+.......
T Consensus 244 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~-------------------------- 297 (547)
T PRK06087 244 LHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ-------------------------- 297 (547)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC--------------------------
Confidence 76 556788999999887 68999999999999999998887776665421100
Q ss_pred CCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--CCCCCCcCCC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSP 468 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p 468 (543)
....+++|.+++||+++++++.+++... ++++++.||+||++...+..... ....+++|.|
T Consensus 298 ----------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~ 360 (547)
T PRK06087 298 ----------------PADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYA 360 (547)
T ss_pred ----------------CCCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhhcCCcCCcc
Confidence 0011589999999999999999988875 99999999999998766544322 1334678999
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 469 ~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++++++++| ++++.++.++ .|||+++|++++.||+++++.+.+.|+.+|||+|||+|++|++|+++|+||
T Consensus 361 ~~~~~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR 431 (547)
T PRK06087 361 AAGVEIKVVD-EARKTLPPGC---EGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGR 431 (547)
T ss_pred CCCceEEEEc-CCCCCCcCCC---cceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEec
Confidence 9999999999 6667676665 899999999999999999999999998899999999999999999999998
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=453.18 Aligned_cols=404 Identities=28% Similarity=0.403 Sum_probs=346.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|++++|.+.++.+|+++|+... +.. +||+||++++.++|+.|.+.|+++|++|+++++|+.+++++++
T Consensus 4 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~~------~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~l 74 (521)
T PRK06187 4 YPLTIGRILRHGARKHPDKEAVYFD---GRR------TTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYF 74 (521)
T ss_pred ccCCHHHHHHHHHHHCCCceEEEeC---Cce------EcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4579999999999999999999775 433 9999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+++..+++.++++.++++.+..+.+.+.....+.++.++.+++.... ........+
T Consensus 75 a~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (521)
T PRK06187 75 AVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAA------PLAPEVGEY 148 (521)
T ss_pred HHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCcccc------ccccccccH
Confidence 99999999999999999999999999999999999998888887777777777777777654321 112234667
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~ 316 (543)
.++....... .......++++++++|||||||.||+|.+||+++..........+.+.++|++++.+|++|.+++...+
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 227 (521)
T PRK06187 149 EELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY 227 (521)
T ss_pred HHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHH
Confidence 7766543321 223345678999999999999999999999999998887777778899999999999999999998877
Q ss_pred HHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 009114 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (543)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (543)
.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+.....
T Consensus 228 ~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------------- 276 (521)
T PRK06187 228 LALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------------- 276 (521)
T ss_pred HHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC-------------------------------
Confidence 7999999999887 68899999999999999999999999886532110
Q ss_pred hhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCC------CCCCcCCCC
Q 009114 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDN------LSGHVGSPN 469 (543)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~vG~p~ 469 (543)
.....++|.+++||+++++++.+.+.+.+++++++.||+||+++++........ ..+++|.|+
T Consensus 277 -----------~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 345 (521)
T PRK06187 277 -----------FVDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPL 345 (521)
T ss_pred -----------ccCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCcccccc
Confidence 011158999999999999999999999999999999999999876665544333 567899999
Q ss_pred CCeEEEEeecCCCCCCCC--CCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 470 AACEIKLVDVPEMNYTSE--DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 470 ~~~evkivd~~~~~~~~~--~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++++|+| ++++..+. ++ .|||+++|+.++.||+++++.+++.| .+|||+|||+|+++++|.+++.||
T Consensus 346 ~~~~~~i~~-~~~~~~~~~~g~---~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR 416 (521)
T PRK06187 346 PGVEARIVD-DDGDELPPDGGE---VGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDR 416 (521)
T ss_pred CCeEEEEEC-CCCCCCCCCCCC---eeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeec
Confidence 999999999 56666665 54 89999999999999999999999999 578999999999999999999998
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=452.87 Aligned_cols=401 Identities=23% Similarity=0.313 Sum_probs=335.7
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 009114 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (543)
Q Consensus 80 tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~ 159 (543)
+++++|...++++|+++++.+. + +.+||+||.+++.++|++|.+.|+.+|++|+++++|+++|+++++||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4789999999999999998764 2 359999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHH
Q 009114 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (543)
Q Consensus 160 ~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (543)
++|++++|+++.++.+++..++++++++++|++.+..+.+......++.++.++.+++..... ........|+++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 146 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHAS-----EGGGESPSWPKL 146 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCccccc-----CCccccccHHHh
Confidence 999999999999999999999999999999999887777666555556666677666432111 113344567776
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHH
Q 009114 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319 (543)
Q Consensus 240 ~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l 319 (543)
...... .+......+++++|+|||||||.||||.+||+++...+......+.+..+|++++.+|++|.+++...+.++
T Consensus 147 ~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 224 (515)
T TIGR03098 147 LALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAF 224 (515)
T ss_pred hccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHH
Confidence 543322 122334568999999999999999999999999998887777667788999999999999999998888899
Q ss_pred HhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhh
Q 009114 320 YSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWD 398 (543)
Q Consensus 320 ~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d 398 (543)
..|+++++.+ .++..+++.++++++|++.++|.++..+...-.
T Consensus 225 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------------ 268 (515)
T TIGR03098 225 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW------------------------------------ 268 (515)
T ss_pred HcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc------------------------------------
Confidence 9999999887 689999999999999999999999988754100
Q ss_pred HHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCC-CCCCCCCcCCCCCCeEEEE
Q 009114 399 RLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKL 476 (543)
Q Consensus 399 ~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~evki 476 (543)
+.....++|.+++||+++++++.+.++..+ ++.+++.||+||++........ .+...+++|+|+++++++|
T Consensus 269 -------~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 341 (515)
T TIGR03098 269 -------PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLV 341 (515)
T ss_pred -------CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEE
Confidence 001125899999999999999999999988 6889999999998754443222 2356789999999999999
Q ss_pred eecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCC-----------CCeeeccceEEEecCCcEEEecC
Q 009114 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-----------DGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 477 vd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~-----------~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+| +++..++.++ .|||+++|+.++.|||++++.|++.|.. ++||+|||+|++|+||++++.||
T Consensus 342 ~~-~~~~~~~~~~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR 415 (515)
T TIGR03098 342 LR-EDGSECAPGE---EGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGR 415 (515)
T ss_pred EC-CCCCCCCCCC---ceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEec
Confidence 99 5666666665 8999999999999999999999887743 34899999999999999999998
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-53 Score=449.42 Aligned_cols=377 Identities=27% Similarity=0.375 Sum_probs=318.6
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.+.|++.++++||++|+.+. + +.+||+|+.+++.++|+.|.+.|+++||+|+++++|+.+|+++++||
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~ 72 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHAL 72 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 68999999999999999999664 2 45999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++.+++.+++++++++.+|++......+.... ...+++
T Consensus 73 ~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-----------------------------~~~~~~ 123 (483)
T PRK03640 73 QQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-----------------------------SVKFAE 123 (483)
T ss_pred HhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-----------------------------cccHHH
Confidence 999999999999999999999999999999999876544332210 012444
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~ 318 (543)
+...............++++++++|||||||.||+|++||+++...+......+.+.++|++++.+|++|++++...+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 203 (483)
T PRK03640 124 LMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRS 203 (483)
T ss_pred HhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHH
Confidence 43332222222233567899999999999999999999999998877666666788999999999999999998888888
Q ss_pred HHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 009114 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (543)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (543)
+..|+++++.+ .++..+++.++++++|++.++|.++..+.+.....
T Consensus 204 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------------- 250 (483)
T PRK03640 204 VIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------------- 250 (483)
T ss_pred HhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc---------------------------------
Confidence 99999999887 68999999999999999999999999886521100
Q ss_pred hHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--CCCCCCcCCCCCCeEEE
Q 009114 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEIK 475 (543)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~evk 475 (543)
....++|.+++||+++++.+++.++.. ++++++.||+||++..++...+. ....+++|.|+++++++
T Consensus 251 ----------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~ 319 (483)
T PRK03640 251 ----------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELK 319 (483)
T ss_pred ----------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEE
Confidence 011489999999999999999998874 99999999999987654433332 34568999999999999
Q ss_pred EeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 476 ivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|.| ++ +.++.+. .|||+++|++++.||+++++.+++.| .+|||+|||++++++||.++++||
T Consensus 320 i~~-~~-~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR 381 (483)
T PRK03640 320 IEK-DG-VVVPPFE---EGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDR 381 (483)
T ss_pred Eec-CC-CcCCCCC---ceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeec
Confidence 998 33 4555555 79999999999999999999999999 689999999999999999999998
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-53 Score=458.24 Aligned_cols=403 Identities=22% Similarity=0.306 Sum_probs=309.6
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.++|.+.++++||++|+... + ..+||+||.++++++|.+|.++|+++||+|+|+++|++||+++++||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999999999764 2 24999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCC------CeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP------TVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~------~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
+++|++++||++.++.+++.++|+.++++++|++.+..+.+.++....+ .++ ++.++....... ....
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~ 158 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLP-VIFIHEIDFPKR-----PSSE 158 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCce-EEEecccccccC-----Cccc
Confidence 9999999999999999999999999999999999877766555433222 122 444443221100 0112
Q ss_pred eeeHHHHHhcCccCCCC----CCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHH
Q 009114 233 ILTYSNLLSQGRSNLQP----FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~----~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h 308 (543)
..+|+++...+...... .....++|+++|+|||||||.||||+++|+++............+...+++++.+|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 238 (579)
T PLN03102 159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFH 238 (579)
T ss_pred ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhh
Confidence 34567766543322111 12245789999999999999999999999997554443333355677889999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 009114 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (543)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (543)
.+++...+.+++.|+++++.+ +++..+++.|++++||++.++|.++..|.+......
T Consensus 239 ~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 296 (579)
T PLN03102 239 CNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL---------------------- 296 (579)
T ss_pred hcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc----------------------
Confidence 999887777888888888776 688999999999999999999999998865311000
Q ss_pred hcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC--------
Q 009114 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-------- 459 (543)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-------- 459 (543)
....+++.+++||+++++++.++++. +|++++++||+||+++.++.....+
T Consensus 297 --------------------~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~ 355 (579)
T PLN03102 297 --------------------SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDEWNRLPEN 355 (579)
T ss_pred --------------------CCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccccccCCcc
Confidence 00035678899999999999999876 5999999999999976443221100
Q ss_pred ------CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEe
Q 009114 460 ------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533 (543)
Q Consensus 460 ------~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~ 533 (543)
...+..+.++++ ++++|.++.+.++.+. ...|||||+|++++.|||++|+.|++.| .+|||+|||+|++|
T Consensus 356 ~~~~~~~~~g~~~~~~~~--v~i~~~~~~~~v~~~~-~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d 431 (579)
T PLN03102 356 QQMELKARQGVSILGLAD--VDVKNKETQESVPRDG-KTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIH 431 (579)
T ss_pred cccccccCCCcccccccc--eEEeccccccccCCCC-CCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEc
Confidence 112333344444 4555644444443221 1369999999999999999999999999 68999999999999
Q ss_pred cCCcEEEecC
Q 009114 534 PGGRLKIIDR 543 (543)
Q Consensus 534 ~~G~l~i~gR 543 (543)
+||+++|+||
T Consensus 432 ~dG~l~i~GR 441 (579)
T PLN03102 432 PDGHVEIKDR 441 (579)
T ss_pred CCCeEEEEec
Confidence 9999999998
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-53 Score=453.61 Aligned_cols=398 Identities=23% Similarity=0.309 Sum_probs=325.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|.+.++++||++|+... + +.+||+|+.+++.++|..|++.|+++|++|+|+++|+++|+++++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l 75 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF 75 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999998664 2 248999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+++.++++.++++.++++....+.+..........+.++.++... ...++
T Consensus 76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 143 (528)
T PRK07470 76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR------------AGLDY 143 (528)
T ss_pred HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc------------ccccH
Confidence 999999999999999999999999999999999999876655554443344455555554321 12456
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC--cccCCCcEEEEeCChHHHHHHHH
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
+++...............++++++|+|||||||.||||+++|+++...+...... ..+.++|+.+.++|++|.+++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 223 (528)
T PRK07470 144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQ 223 (528)
T ss_pred HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHH
Confidence 6665443222233344577899999999999999999999999987655432222 24678899999999999999865
Q ss_pred HHHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCC
Q 009114 315 QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (543)
.+ .++.|++.++++ .++..+++.++++++|+++++|.+++.+.+...
T Consensus 224 ~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 273 (528)
T PRK07470 224 LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA----------------------------- 273 (528)
T ss_pred HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC-----------------------------
Confidence 44 567777776664 588999999999999999999999988754200
Q ss_pred CCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC--------CCCCCC
Q 009114 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE--------GDNLSG 463 (543)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~--------~~~~~~ 463 (543)
.+....+++|.+++||++++++..+++...+|+++++.||+||+++.+..... .....+
T Consensus 274 -------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~ 340 (528)
T PRK07470 274 -------------VDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIG 340 (528)
T ss_pred -------------cCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceee
Confidence 00011258999999999999999999999899999999999998766554321 123457
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+++++++++| ++++.++.++ .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++||++++.||
T Consensus 341 ~~G~~~~g~~~~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR 415 (528)
T PRK07470 341 TCGFERTGMEVQIQD-DEGRELPPGE---TGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415 (528)
T ss_pred ccCcccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCC
Confidence 899999999999999 5677777666 89999999999999999999999998 689999999999999999999998
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=460.06 Aligned_cols=410 Identities=20% Similarity=0.221 Sum_probs=311.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.+.+.+ +.++++++.+. +. .+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++|++++++||
T Consensus 87 ~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~ 159 (652)
T TIGR01217 87 LNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT 159 (652)
T ss_pred eeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 444444433 35788988775 32 244577999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC---------HHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCC
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 229 (543)
+++|++++|+++.++++++.++++++++++||+++.. .+.+.++...++.++.+++++...........
T Consensus 160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 237 (652)
T TIGR01217 160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPK-- 237 (652)
T ss_pred HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccccc--
Confidence 9999999999999999999999999999999998653 34555555566677777776532211000000
Q ss_pred CceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHH-HHHhhhcCcccCCCcEEEEeCChHH
Q 009114 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA-SVAGATLGTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~-~~~~~~~~~~~~~~d~~l~~lpl~h 308 (543)
......|+++...............++|+++|+|||||||.||||+++|++++. ........+++.++|+++++.|+.|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 317 (652)
T TIGR01217 238 IDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGW 317 (652)
T ss_pred ccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcch
Confidence 012356777765422212223345679999999999999999999999999654 3444444577899999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 009114 309 IYERANQVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (543)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (543)
++. ...+.+++.|++++++.+ ++..+++.++++++|++.+.|.++..+...
T Consensus 318 ~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------------------- 373 (652)
T TIGR01217 318 MMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA----------------------- 373 (652)
T ss_pred hhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-----------------------
Confidence 864 234578999999999863 678899999999999998888777554321
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCC--ccccccChhhhccccccCCC-CCC
Q 009114 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG--RVTEGYGMTETSCLISQLDE-GDN 460 (543)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~--~i~~~YG~TE~~~~~~~~~~-~~~ 460 (543)
+......+| .++||.+++||+++++++.+++++.++. .+.+.||+||+++......+ ...
T Consensus 374 ------~~~~~~~~~-----------l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~ 436 (652)
T TIGR01217 374 ------GVHPARTHD-----------LSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPV 436 (652)
T ss_pred ------CCCccccCC-----------hhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCC
Confidence 000000011 1589999999999999999999988864 46789999997544332222 234
Q ss_pred CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCc--cchhhhcCChhhhh--hh-cC-CCCeeeccceEEEec
Q 009114 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTK--EV-ID-EDGWFHTGDIGMWIP 534 (543)
Q Consensus 461 ~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~--~v~~gY~~~~~~t~--~~-~~-~~gw~~TGDig~~~~ 534 (543)
..+++|.|.++++++|+| ++++.+ .++ .|||+++|| +++.|||+||+.|+ +. |+ .+|||+|||+|++|+
T Consensus 437 ~~g~~g~p~~g~~v~ivd-~~g~~~-~g~---~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~ 511 (652)
T TIGR01217 437 HIGEIQAPGLGTAVQSWD-PEGKPV-TGE---VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP 511 (652)
T ss_pred cCCccCCCcCCCceEEEC-CCCCCC-CCC---ccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC
Confidence 568899999999999999 555554 344 899999996 68999999998765 22 32 278999999999999
Q ss_pred CCcEEEecC
Q 009114 535 GGRLKIIDR 543 (543)
Q Consensus 535 ~G~l~i~gR 543 (543)
||+|+|+||
T Consensus 512 dG~l~i~GR 520 (652)
T TIGR01217 512 RGGIVIHGR 520 (652)
T ss_pred CCcEEEEec
Confidence 999999999
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-53 Score=449.87 Aligned_cols=386 Identities=25% Similarity=0.344 Sum_probs=318.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..+.+.|++.++++||++|+... + +.+||+|++++++++|.+|++ .|+++|++|+++++|+++|+++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 35788999999999999999652 2 459999999999999999986 7999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|++++|+++.++++++.++++.++++++++++...+.+........ ...++.+. +++
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------~~~ 133 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSY-VQRVISIT------------------SLK 133 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccC-cceEEEec------------------chH
Confidence 99999999999999999999999999999999999877666554432221 22233322 122
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH-H
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-V 316 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~-~ 316 (543)
++.... ........++++++|+|||||||.||+|.++|+++..........+.+..+|++++.+|++|.+++... +
T Consensus 134 ~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 210 (496)
T PRK06839 134 EIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAF 210 (496)
T ss_pred hhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHH
Confidence 222211 122234567899999999999999999999999987766555555678899999999999999998764 5
Q ss_pred HHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 009114 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (543)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (543)
.++..|+++++.+ .++..+++.++++++|++.++|.++..+......
T Consensus 211 ~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------- 258 (496)
T PRK06839 211 PTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKF-------------------------------- 258 (496)
T ss_pred HHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCccc--------------------------------
Confidence 6889999988876 6899999999999999999999999988652100
Q ss_pred hhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--CCCCCCcCCCCCCeE
Q 009114 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACE 473 (543)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~e 473 (543)
......++|.+++||+++++++.+.++.. ++++.+.||+||++...+..... ....+++|.|+++++
T Consensus 259 ----------~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 327 (496)
T PRK06839 259 ----------ETTNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCD 327 (496)
T ss_pred ----------ccCCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCce
Confidence 00011589999999999999999999987 89999999999998655433322 245689999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 474 vkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|+| ++++.++.|+ .|||+|+|+.++.||+++++.+++.+ .+|||+|||+|+++++|.+++.||
T Consensus 328 ~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR 392 (496)
T PRK06839 328 YELID-ENKNKVEVGE---VGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGR 392 (496)
T ss_pred EEEEC-CCcCCCCCCC---ceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEecc
Confidence 99999 4555566666 89999999999999999999999988 689999999999999999999998
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=454.60 Aligned_cols=405 Identities=27% Similarity=0.374 Sum_probs=331.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++||++|+... ++. +.+||+||.++++++|..|.+.|+++|++|+|+++|+++|+++++
T Consensus 14 ~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 86 (559)
T PRK08315 14 LEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQF 86 (559)
T ss_pred hhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3468999999999999999999775 333 458999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccC-------------CCCeeEEEEeCCC
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSE-------------VPTVRLIVVIGGI 218 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~-------------~~~l~~ii~~~~~ 218 (543)
||+++|++++|+++.++.+++..+++.++++++|++.... ..+.+...+ .+..+.++.++..
T Consensus 87 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (559)
T PRK08315 87 ATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE 166 (559)
T ss_pred HHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeeccc
Confidence 9999999999999999999999999999999999987542 222222111 1334445544332
Q ss_pred CCCCCCCCcCCCceeeeHHHHHhcCccC-----CCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcc
Q 009114 219 DDQIPSLPITTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~ 293 (543)
. ......|+++....... ........++++++++|||||||.||||.+||++++..+......+.
T Consensus 167 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~ 236 (559)
T PRK08315 167 K----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMK 236 (559)
T ss_pred C----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcC
Confidence 1 11235566665433211 01122345789999999999999999999999999988887777788
Q ss_pred cCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCc
Q 009114 294 FYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (543)
Q Consensus 294 ~~~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~ 370 (543)
+.++|++++.+|++|.+++.. .+.++..|+++++.. .++..+++.+.++++|++.++|.++..+......
T Consensus 237 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~------- 309 (559)
T PRK08315 237 LTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF------- 309 (559)
T ss_pred CCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc-------
Confidence 999999999999999999877 466888999988544 6899999999999999999999999876542100
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCc-cccccChhhhc
Q 009114 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETS 449 (543)
Q Consensus 371 ~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~-i~~~YG~TE~~ 449 (543)
+....+++|.+++||+++++++.+.+++.++.. +++.||+||++
T Consensus 310 -----------------------------------~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~ 354 (559)
T PRK08315 310 -----------------------------------ARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETS 354 (559)
T ss_pred -----------------------------------CCCCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccc
Confidence 000115899999999999999999999988755 99999999998
Q ss_pred cccccCCCCC---CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeec
Q 009114 450 CLISQLDEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526 (543)
Q Consensus 450 ~~~~~~~~~~---~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~T 526 (543)
.+++.....+ ....++|.|+++++++|+|+++++.++.++ .|||+|+|++++.|||++|+.+++.|+.++||+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~T 431 (559)
T PRK08315 355 PVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGE---QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHT 431 (559)
T ss_pred cceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCC---ceEEEEECchhhhhhcCChhHHhhcCCCCCCEEc
Confidence 7665443322 346789999999999999966577777776 8999999999999999999999999988999999
Q ss_pred cceEEEecCCcEEEecC
Q 009114 527 GDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 527 GDig~~~~~G~l~i~gR 543 (543)
||+|++++||.++|+||
T Consensus 432 GD~~~~~~dg~~~~~GR 448 (559)
T PRK08315 432 GDLAVMDEEGYVNIVGR 448 (559)
T ss_pred cceEEEcCCceEEEEee
Confidence 99999999999999998
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=461.00 Aligned_cols=410 Identities=19% Similarity=0.221 Sum_probs=317.0
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.+.+.+. .+|+++|+.+. +. .+..+.+||+||.+++.++|++|+++|+++||+|+|+++|++|++++++||
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~ 159 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT 159 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3454444332 57999999875 32 345678999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC---------HHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCC
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITT 229 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~ 229 (543)
+++|++++|+++.++++++.+++++++++++|+++.. .+.+.++...++.++.++.++...... ....
T Consensus 160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~ 236 (655)
T PRK03584 160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAA---AAAA 236 (655)
T ss_pred HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcc---cccc
Confidence 9999999999999999999999999999999998643 233444444556666677665432100 0011
Q ss_pred CceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHH-HHhhhcCcccCCCcEEEEeCChHH
Q 009114 230 GVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIAS-VAGATLGTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~-~~~~~~~~~~~~~d~~l~~lpl~h 308 (543)
......|+++...............++++++|+|||||||.||||++||++++.. +......+.+.++|+++++.++.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 316 (655)
T PRK03584 237 LPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGW 316 (655)
T ss_pred cCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchH
Confidence 1134567777653222222334456799999999999999999999999997644 444455577889999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEec-----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 009114 309 IYERANQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (543)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (543)
++.. ..+.+++.|+++++++ .++..+++.++++++|++..+|+++..+.+.-.
T Consensus 317 ~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------------- 374 (655)
T PRK03584 317 MMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL--------------------- 374 (655)
T ss_pred HhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------------
Confidence 8653 3567899999999986 378899999999999999999999987754100
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh--CCccccccChhhhccccccCCC-CCC
Q 009114 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDE-GDN 460 (543)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~-~~~ 460 (543)
.....+| .+++|.+++||+++++++.+++.+.+ ++.+.+.||+||+++......+ ...
T Consensus 375 --------~~~~~~~-----------l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~ 435 (655)
T PRK03584 375 --------VPGETHD-----------LSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPV 435 (655)
T ss_pred --------CccccCC-----------hhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCc
Confidence 0000011 15899999999999999999999988 4779999999998654433222 234
Q ss_pred CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCc--cchhhhcCChhhhh--hhc-C-CCCeeeccceEEEec
Q 009114 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP--LIFKGYYKDEIQTK--EVI-D-EDGWFHTGDIGMWIP 534 (543)
Q Consensus 461 ~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~--~v~~gY~~~~~~t~--~~~-~-~~gw~~TGDig~~~~ 534 (543)
..+++|.|.++++++|+| ++++.. .++ .|||+|+|+ +++.|||++++.++ +.+ . .+|||+|||+|++|+
T Consensus 436 ~~g~~g~p~~g~~~~ivd-~~g~~~-~g~---~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~ 510 (655)
T PRK03584 436 YRGEIQCRGLGMAVEAWD-EDGRPV-VGE---VGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE 510 (655)
T ss_pred CCCccCCCcCCceeEEEC-CCCCCC-CCC---ceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC
Confidence 568899999999999999 555555 444 899999996 79999999998654 222 1 268999999999999
Q ss_pred CCcEEEecC
Q 009114 535 GGRLKIIDR 543 (543)
Q Consensus 535 ~G~l~i~gR 543 (543)
||+++|+||
T Consensus 511 dG~l~i~GR 519 (655)
T PRK03584 511 HGGVVIYGR 519 (655)
T ss_pred CCeEEEEee
Confidence 999999998
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=450.96 Aligned_cols=406 Identities=23% Similarity=0.320 Sum_probs=327.5
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.++.++|+..++++|++.++.++. + ++++.+||.||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~--~---~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRV--E---GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeec--c---CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 578999999999999998886641 2 23466999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++++++.++++.+++++++++.+..+.+.+.......++.++.+++.... . ...+.+.+|++
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~ 159 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHL-P----AGSTPLLCYET 159 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCcc-c----cCCcccccHHH
Confidence 999999999999999999999999999999999988777666655556667666666543211 0 11234677888
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHH--hhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA--GATLGTKFYPSDVYISYLPLAHIYERANQV 316 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~--~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~ 316 (543)
+....... .......++++++++|||||||.||||++||++++.... .....+.+.++|++++.+|++|.+++...+
T Consensus 160 l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (539)
T PRK07008 160 LVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY 238 (539)
T ss_pred HhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHH
Confidence 76543221 222345678999999999999999999999999865432 223346778899999999999998877777
Q ss_pred HHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 009114 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (543)
Q Consensus 317 ~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (543)
.++..|+++++.+ +++..+++.++++++|++.++|.++..+.+.....
T Consensus 239 ~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------------------------------ 288 (539)
T PRK07008 239 SAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------------------------------ 288 (539)
T ss_pred HHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc------------------------------
Confidence 8889999999875 58999999999999999999999998876531110
Q ss_pred chhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--------C---CCCC
Q 009114 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--------D---NLSG 463 (543)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--------~---~~~~ 463 (543)
....+++|.+++||+++++++.+.+++.+++++++.||+||++..++..... + ....
T Consensus 289 ------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (539)
T PRK07008 289 ------------GLRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE 356 (539)
T ss_pred ------------CCCcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcc
Confidence 0011589999999999999999999999999999999999998654432211 0 1236
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+|+++++|+| ++++..+.+.. ..|||+++|++++.||+++++ +.+ .+|||+|||+|++|+||+++++||
T Consensus 357 ~~G~p~pg~~~~i~d-~~~~~~~~~~~-~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~l~~~GR 430 (539)
T PRK07008 357 KQGRVIYGVDMKIVG-DDGRELPWDGK-AFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGFMQITDR 430 (539)
T ss_pred cCCccccceEEEEEC-CCCCccCCCCC-cceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCcEEEeec
Confidence 799999999999999 55555543321 269999999999999999984 344 379999999999999999999998
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=453.96 Aligned_cols=402 Identities=26% Similarity=0.362 Sum_probs=326.5
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|++++|++.++++|+++|+... +.. +.+||+||.+++.++|.+|.+.|+++|++|+|+++|+++|+++++||
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~ 90 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFAT 90 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHH
Confidence 68999999999999999999775 332 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhcc-------------CCCCeeEEEEeCCCCC
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLS-------------EVPTVRLIVVIGGIDD 220 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~-------------~~~~l~~ii~~~~~~~ 220 (543)
+++|++++|+++.++.+++.+++++++++++|++.... ..+.+... ..+.++.++.++....
T Consensus 91 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (558)
T PRK12583 91 ARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPP 170 (558)
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCC
Confidence 99999999999999999999999999999999976432 22222111 1233344444432211
Q ss_pred CCCCCCcCCCceeeeHHHHHhcCccC-----CCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccC
Q 009114 221 QIPSLPITTGVQILTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY 295 (543)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~ 295 (543)
.....|+++...+... ........++++++++|||||||.||||.+||+++.+.+......+.+.
T Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~ 240 (558)
T PRK12583 171 ----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLT 240 (558)
T ss_pred ----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCC
Confidence 1223455554332211 1112234678999999999999999999999999998887776667888
Q ss_pred CCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchH
Q 009114 296 PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (543)
Q Consensus 296 ~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 372 (543)
++|++++.+|++|.++... .+.++..|+++++.. .++..+++.++++++|++.++|+++..+......
T Consensus 241 ~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--------- 311 (558)
T PRK12583 241 EHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQR--------- 311 (558)
T ss_pred CCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccc---------
Confidence 9999999999999999877 456788999988754 6889999999999999999999998766532100
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC-CccccccChhhhccc
Q 009114 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCL 451 (543)
Q Consensus 373 ~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~ 451 (543)
. ....+++|.+++||+++++++.+.+.+.++ +.+++.||+||++++
T Consensus 312 ----------------~-----------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~ 358 (558)
T PRK12583 312 ----------------G-----------------NFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPV 358 (558)
T ss_pred ----------------c-----------------CCCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccc
Confidence 0 000148999999999999999999998886 469999999999877
Q ss_pred cccCCCC---CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccc
Q 009114 452 ISQLDEG---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGD 528 (543)
Q Consensus 452 ~~~~~~~---~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGD 528 (543)
++..... ....+++|.|+++++++|+|++ +..++.++ .|||+|+|+.++.||+++++.+++.|+.+|||+|||
T Consensus 359 ~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD 434 (558)
T PRK12583 359 SLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGE---IGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGD 434 (558)
T ss_pred eeccCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCC---eeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccc
Confidence 6654322 2356789999999999999954 67777776 899999999999999999999999998899999999
Q ss_pred eEEEecCCcEEEecC
Q 009114 529 IGMWIPGGRLKIIDR 543 (543)
Q Consensus 529 ig~~~~~G~l~i~gR 543 (543)
+|++++||+++|+||
T Consensus 435 l~~~~~dg~l~i~GR 449 (558)
T PRK12583 435 LATMDEQGYVRIVGR 449 (558)
T ss_pred eEEECCCccEEEEec
Confidence 999999999999998
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=449.81 Aligned_cols=403 Identities=26% Similarity=0.368 Sum_probs=333.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|.+.++++||++|+.+. + +.+||+||.+++.++|..|.+.|+++|++|+++++|+++|+++++
T Consensus 9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~ 79 (523)
T PRK08316 9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79 (523)
T ss_pred cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999765 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.+....... ..+....... ..........+
T Consensus 80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~ 152 (523)
T PRK08316 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLG------GREAPGGWLDF 152 (523)
T ss_pred HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeeccc------ccccccchhhH
Confidence 9999999999999999999999999999999999998887776655433321 1111111100 01112234556
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH-
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ- 315 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~- 315 (543)
+++....... .......++++++|+|||||||.||+|.+||++++..+........+.++|++++.+|++|.+++...
T Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~ 231 (523)
T PRK08316 153 ADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFL 231 (523)
T ss_pred HHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHH
Confidence 6655433221 23344678899999999999999999999999999887776666788999999999999999998764
Q ss_pred HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 009114 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (543)
Q Consensus 316 ~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (543)
+.++..|+++++.+ .++..+++.++++++|++.++|.++..+.+...
T Consensus 232 ~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------------- 279 (523)
T PRK08316 232 GPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD-------------------------------- 279 (523)
T ss_pred HHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc--------------------------------
Confidence 45788999999985 799999999999999999999999987765210
Q ss_pred chhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCC--CCCCCcCCCCCC
Q 009114 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAA 471 (543)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~ 471 (543)
.+....+++|.+++||++++.++.+.+++.+ ++++++.||+||++.++....+.+ ...+++|.|+++
T Consensus 280 ----------~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~ 349 (523)
T PRK08316 280 ----------FDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLN 349 (523)
T ss_pred ----------cccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCC
Confidence 0011125899999999999999999999988 789999999999987766544332 446889999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 472 ~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++|+| ++++..+.++ .|||+++|++++.||+++++.+++.| .+|||+|||+|++++||.++|+||
T Consensus 350 ~~~~i~~-~~~~~~~~g~---~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR 416 (523)
T PRK08316 350 VETRVVD-DDGNDVAPGE---VGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDR 416 (523)
T ss_pred cEEEEEc-CCCCCCCCCC---cceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecc
Confidence 9999999 5566666665 89999999999999999999999999 789999999999999999999998
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=447.52 Aligned_cols=394 Identities=27% Similarity=0.388 Sum_probs=327.0
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.++.+++..++ ++|++.|+... ++ +.+||.||.+++.++|++|.++|+++||+|+++++|+++|+++++||
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~ 73 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLAT 73 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57899999999 99999998663 33 45999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++.+++..+++.+++++++++....+.+....... ..+.++.++.... ..+.+
T Consensus 74 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~~~~~ 139 (504)
T PRK07514 74 LRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGT-------------GSLLE 139 (504)
T ss_pred HHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCc-------------ccHHH
Confidence 999999999999999999999999999999999988777665544332 2233444443211 11222
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVM 317 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~-~~~ 317 (543)
..... ..........++++++|+|||||||.||+|.+||+++...+........+.++|++++.+|++|.+++.. .+.
T Consensus 140 ~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 218 (504)
T PRK07514 140 AAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNV 218 (504)
T ss_pred hhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHH
Confidence 21111 1111223456889999999999999999999999999998877766678889999999999999999876 557
Q ss_pred HHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCch
Q 009114 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (543)
Q Consensus 318 ~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~ 396 (543)
+++.|+++++.+ .++..+++.+ .++|++.++|.++.++.....
T Consensus 219 ~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~---------------------------------- 262 (504)
T PRK07514 219 ALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR---------------------------------- 262 (504)
T ss_pred HHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC----------------------------------
Confidence 899999999887 6888898888 479999999999988764200
Q ss_pred hhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEE
Q 009114 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKL 476 (543)
Q Consensus 397 ~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evki 476 (543)
......+++|.+++||+++++++.++++..+++++++.||+||++.............+++|.|+++++++|
T Consensus 263 --------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i 334 (504)
T PRK07514 263 --------LTREAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRV 334 (504)
T ss_pred --------CCcccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEE
Confidence 000112589999999999999999999999999999999999987655543333345678999999999999
Q ss_pred eecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 477 VDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 477 vd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+|+++++..+.++ .|||+|+|++++.||+++++.+++.|..+|||+|||+|+++++|.++|+||
T Consensus 335 ~d~~~~~~~~~g~---~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR 398 (504)
T PRK07514 335 TDPETGAELPPGE---IGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGR 398 (504)
T ss_pred EECCCCCCCCCCC---ceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEecc
Confidence 9977777777776 899999999999999999999999998899999999999999999999998
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-53 Score=469.68 Aligned_cols=375 Identities=21% Similarity=0.280 Sum_probs=307.3
Q ss_pred CCHHHHHHHHHHh--cCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 79 GTTHDNFVRAVDT--FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 79 ~tl~~~~~~~~~~--~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
.|+.++|.+.+++ +||++|+... ..+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3789999998886 7999998542 138999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+++.+++++++++++|++......+... . ++ ..
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-------~-~~---------------------~~ 124 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS-------R-VA---------------------EA 124 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc-------c-cc---------------------hh
Confidence 9999999999999999999999999999999999986543322110 0 00 01
Q ss_pred HHHHhcC-ccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh-cCcccCCCcEEEEeCChHHHHHHHH
Q 009114 237 SNLLSQG-RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 237 ~~l~~~~-~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~-~~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
.++.... ...+....+..++++++|+|||||||.||||+++|+++...+.... ..+.+.++|++++.+|++|.+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 204 (705)
T PRK06060 125 AELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGN 204 (705)
T ss_pred hhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhH
Confidence 1111110 0111112234678999999999999999999999999988776553 3467889999999999999988754
Q ss_pred -HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCC
Q 009114 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (543)
Q Consensus 315 -~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (543)
.+.+++.|+++++.+ .++..+.+.+.++++|+++++|.++.++.+....
T Consensus 205 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~---------------------------- 256 (705)
T PRK06060 205 SVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP---------------------------- 256 (705)
T ss_pred HHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------------
Confidence 567899999999876 5788888999999999999999999887652100
Q ss_pred CCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCCCCCCCcCCCCC
Q 009114 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (543)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (543)
...+++|.+++||+++++++.+.+.+.| ++++++.||+||++..+..........+++|+|++
T Consensus 257 ----------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~ 320 (705)
T PRK06060 257 ----------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLP 320 (705)
T ss_pred ----------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCC
Confidence 0014899999999999999999999988 58999999999997655444333455688999999
Q ss_pred CeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 471 ~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++++|+| ++++.++.++ .|||||+|++++.|||++|+.+ +..+|||+|||+|++++||+++|+||
T Consensus 321 ~~~v~i~d-~~g~~~~~g~---~GEl~i~g~~v~~GY~~~~~~~---~~~~~~~~TGDl~~~~~dG~l~~~GR 386 (705)
T PRK06060 321 PYEIRVVA-PDGTTAGPGV---EGDLWVRGPAIAKGYWNRPDSP---VANEGWLDTRDRVCIDSDGWVTYRCR 386 (705)
T ss_pred CcEEEEEC-CCCCCCCCCC---ceEEEEccchhhhhhhCCCccc---ccCCCcEECCeeEEECCCceEEEecc
Confidence 99999999 5566666665 8999999999999999999875 34689999999999999999999998
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-53 Score=492.98 Aligned_cols=406 Identities=25% Similarity=0.348 Sum_probs=328.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...|+.++|++.++++||++|+... ++ +.+||+|+.++++++|++|.+ ++++||+|+++++|++||++++
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~ 682 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN 682 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence 45689999999999999999999653 22 359999999999999999987 4899999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc--CCCCeeEEEEeCCCCCCCCCCCcCCCcee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS--EVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~--~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (543)
+||+++|++++|+++..+++++.++++++++++++++++..+.+.+... ..+....++..++...... ..
T Consensus 683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 754 (1146)
T PRK08633 683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------KV 754 (1146)
T ss_pred HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------hh
Confidence 9999999999999999999999999999999999998876665542110 1222334444443211000 00
Q ss_pred eeHHHHHhcCccC-----CCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHH
Q 009114 234 LTYSNLLSQGRSN-----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 234 ~~~~~l~~~~~~~-----~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h 308 (543)
..+.+........ ........++|+++|+|||||||.||||++||+++...+......+.+.++|++++.+|++|
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 834 (1146)
T PRK08633 755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834 (1146)
T ss_pred HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHH
Confidence 1122221110000 00013456899999999999999999999999999998887777788899999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 009114 309 IYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (543)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (543)
.+++.. .+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+...
T Consensus 835 ~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 891 (1146)
T PRK08633 835 SFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK----------------------- 891 (1146)
T ss_pred HHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc-----------------------
Confidence 999987 567899999998876 588999999999999999999999988765210
Q ss_pred HHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-------
Q 009114 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG------- 458 (543)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~------- 458 (543)
.++...+++|.+++||+++++++.+.+++.+|+++++.||+||+++.++...+.
T Consensus 892 -------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 952 (1146)
T PRK08633 892 -------------------LHPLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFK 952 (1146)
T ss_pred -------------------cCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccc
Confidence 000111589999999999999999999999999999999999998766544321
Q ss_pred ---CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCC---CCeeeccceEEE
Q 009114 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE---DGWFHTGDIGMW 532 (543)
Q Consensus 459 ---~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~---~gw~~TGDig~~ 532 (543)
....+++|+|+|+++++|+|+++++.++.++ .|||+++|++++.||+++|+.|++.+++ +|||+|||+|++
T Consensus 953 ~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~ 1029 (1146)
T PRK08633 953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGE---DGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029 (1146)
T ss_pred cccCCCCCCccccCCCCEEEEEcCCCCccCCCCC---ceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEE
Confidence 1246789999999999999977788777776 8999999999999999999999999842 399999999999
Q ss_pred ecCCcEEEecC
Q 009114 533 IPGGRLKIIDR 543 (543)
Q Consensus 533 ~~~G~l~i~gR 543 (543)
|+||++++.||
T Consensus 1030 ~~~g~l~~~gR 1040 (1146)
T PRK08633 1030 DEDGFLTITDR 1040 (1146)
T ss_pred cCCceEEEEec
Confidence 99999999998
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=445.64 Aligned_cols=398 Identities=22% Similarity=0.302 Sum_probs=332.6
Q ss_pred CCCHHHHHHHH-HHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 78 IGTTHDNFVRA-VDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 78 ~~tl~~~~~~~-~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
.++..+++++. ++.+||++|+... + ..+||.|+.++++++|++|.+.|+++|++|+++++|+++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 46778888887 6779999998553 2 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+.+.++++.++++++|++....+.+.+.....+.++.++.++.... ....+
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 142 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA-----------GEVQL 142 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc-----------ccccH
Confidence 9999999999999999999999999999999999998888777766666677777776654211 11344
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEeCChHHHHHHHH-
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISYLPLAHIYERAN- 314 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~lpl~h~~~~~~- 314 (543)
.++...... ........++++++|+|||||||.||||++||+++...+.. ....+.+.++|++++.+|++|.+++..
T Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 221 (508)
T TIGR02262 143 AELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNA 221 (508)
T ss_pred HHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHH
Confidence 454432222 12223456789999999999999999999999999887765 334467889999999999999999876
Q ss_pred HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
.+.++..|+++++.+ .++..+++.|++++||++.++|.++..+.....
T Consensus 222 ~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~------------------------------ 271 (508)
T TIGR02262 222 LTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN------------------------------ 271 (508)
T ss_pred HHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc------------------------------
Confidence 456788999998876 478999999999999999999998876643100
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCe
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAAC 472 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ 472 (543)
.+...+.++|.+++||+++++++.+.|++.|++++++.||+||++.+++.....+...+++|.|++++
T Consensus 272 ------------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~ 339 (508)
T TIGR02262 272 ------------LPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGY 339 (508)
T ss_pred ------------ccccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCc
Confidence 00111258999999999999999999999999999999999999876655444445567899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 473 evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++|+| ++++.++.++ .|||+++|+.++.||+++++.|++.| .+|||+|||+++++++|.++|+||
T Consensus 340 ~v~i~d-~~~~~~~~g~---~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR 405 (508)
T TIGR02262 340 RLRLVG-DGGQDVAAGE---PGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGR 405 (508)
T ss_pred EEEEEC-CCCCCCCCCC---eeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEecc
Confidence 999999 7777777776 89999999999999999999999999 689999999999999999999998
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=449.50 Aligned_cols=406 Identities=19% Similarity=0.263 Sum_probs=322.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...++.++|.+.++++|+++|+... + +.+||+||.+++.++|++|.+.|+++||+|+++++|+.+|++++
T Consensus 7 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~ 77 (540)
T PRK06164 7 PRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF 77 (540)
T ss_pred cCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence 45679999999999999999999643 2 34999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccC-CCCeeEEEEeCCCCCCCCCCCcCC
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSE-VPTVRLIVVIGGIDDQIPSLPITT 229 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~-~~~l~~ii~~~~~~~~~~~~~~~~ 229 (543)
+||+++|++++|+++..+.+++.+++++++++++|++.+.. +.+...... .+.++.++.++.........
T Consensus 78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (540)
T PRK06164 78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAP---- 153 (540)
T ss_pred HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCC----
Confidence 99999999999999999999999999999999999987642 222222211 23455566554211111100
Q ss_pred CceeeeHHHHHhcCccCCC---CCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCCh
Q 009114 230 GVQILTYSNLLSQGRSNLQ---PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (543)
Q Consensus 230 ~~~~~~~~~l~~~~~~~~~---~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl 306 (543)
....+.++......... ......++++++++|||||||.||||++||+++...+......+.+.++|++++++|+
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~ 231 (540)
T PRK06164 154 --APGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPF 231 (540)
T ss_pred --CcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCc
Confidence 00111111111100000 0122346899999999999999999999999999988877777888899999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 009114 307 AHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (543)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (543)
+|.+++...+.++..|+++++.+ +++..+++.|+++++|+++++|.++..+.+... .
T Consensus 232 ~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~----~------------------ 289 (540)
T PRK06164 232 CGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG----E------------------ 289 (540)
T ss_pred hhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc----c------------------
Confidence 99999988888999999998877 789999999999999999999999998866300 0
Q ss_pred HHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcC-CCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC---CC
Q 009114 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGA-SPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NL 461 (543)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg-a~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---~~ 461 (543)
.....++|.+..+| ++...++.+++... ++++++.||+||++++++...... ..
T Consensus 290 ---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 347 (540)
T PRK06164 290 ---------------------RADFPSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQPATDPVSVR 347 (540)
T ss_pred ---------------------cCCCcceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccCCCCCCcce
Confidence 00014778776665 66777777777765 899999999999987655443222 22
Q ss_pred CCCcCCCC-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEE
Q 009114 462 SGHVGSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 462 ~~~vG~p~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i 540 (543)
...+|.|. ++++++|+|+++++.++.++ .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|++|.++|
T Consensus 348 ~~~~g~~~~~~~~~~i~d~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~ 424 (540)
T PRK06164 348 IEGGGRPASPEARVRARDPQDGALLPDGE---SGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVY 424 (540)
T ss_pred eccCccccCCCeEEEEecCCCCcCCCCCC---eeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEE
Confidence 34577775 89999999988888887776 899999999999999999999999998899999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
.||
T Consensus 425 ~GR 427 (540)
T PRK06164 425 QTR 427 (540)
T ss_pred Eee
Confidence 998
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=448.54 Aligned_cols=411 Identities=23% Similarity=0.342 Sum_probs=324.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...++.++|.+.++++|++.|+... + +.+||+||.++++++|.+|.+.|+++||+|+|+++|+++|+++++
T Consensus 21 ~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~l 91 (557)
T PRK07059 21 QYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIA 91 (557)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 3568999999999999999999764 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCC-CCCCC----------
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDD-QIPSL---------- 225 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~-~~~~~---------- 225 (543)
||+++|++++|+++.++.+++.+++++++++++|++......+....... ..+.++....... .....
T Consensus 92 a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (557)
T PRK07059 92 AVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGFKGHIVNFVVRRVK 170 (557)
T ss_pred HHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEeccccccccccccccccccccc
Confidence 99999999999999999999999999999999999877665555443322 2333333221100 00000
Q ss_pred ---CcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC----ccc---C
Q 009114 226 ---PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG----TKF---Y 295 (543)
Q Consensus 226 ---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~----~~~---~ 295 (543)
........+.++++...+...........++++++|+|||||||.||||+++|++++..+...... ... .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 250 (557)
T PRK07059 171 KMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRP 250 (557)
T ss_pred ccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCC
Confidence 000011234566666554433333445678999999999999999999999999998765433221 111 1
Q ss_pred CCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchH
Q 009114 296 PSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (543)
Q Consensus 296 ~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 372 (543)
..+.+++.+|++|.+++.. .+.++..|++.++.+ .++..+++.++++++|.+.++|.++..+.....
T Consensus 251 ~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~---------- 320 (557)
T PRK07059 251 DQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD---------- 320 (557)
T ss_pred CCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC----------
Confidence 2457889999999998765 456778888877765 488899999999999999999999998765200
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhcccc
Q 009114 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452 (543)
Q Consensus 373 ~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 452 (543)
......+++|.+++||+++++.+.+.++..+++++++.||+||++.++
T Consensus 321 --------------------------------~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 368 (557)
T PRK07059 321 --------------------------------FDKLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVA 368 (557)
T ss_pred --------------------------------cCcCCchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchh
Confidence 000011488999999999999999999999999999999999998766
Q ss_pred ccCCCC-CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEE
Q 009114 453 SQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (543)
Q Consensus 453 ~~~~~~-~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~ 531 (543)
+..... ....+++|.|+++++++|+| ++++.++.+. .|||+++|+.++.|||++++.|++.|..+|||+|||+|+
T Consensus 369 ~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~ 444 (557)
T PRK07059 369 TCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGE---PGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGV 444 (557)
T ss_pred hcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCC---ceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEE
Confidence 544332 23457899999999999999 5667777776 899999999999999999999999998899999999999
Q ss_pred EecCCcEEEecC
Q 009114 532 WIPGGRLKIIDR 543 (543)
Q Consensus 532 ~~~~G~l~i~gR 543 (543)
+++||+++++||
T Consensus 445 ~~~~g~~~~~GR 456 (557)
T PRK07059 445 MDERGYTKIVDR 456 (557)
T ss_pred EcCCCcEEEecc
Confidence 999999999998
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-52 Score=450.88 Aligned_cols=413 Identities=23% Similarity=0.300 Sum_probs=318.7
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|++++|.+.+..+|+++|+... . ..+||+||.++++++|.+|.+.|+++||+|+++++|+++|+++++|
T Consensus 19 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la 89 (567)
T PLN02479 19 ALTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFG 89 (567)
T ss_pred ccCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 457999999999999999999653 2 3489999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCC-------CeeEEEEeCCCCCCCCCCCcCCC
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP-------TVRLIVVIGGIDDQIPSLPITTG 230 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~-------~l~~ii~~~~~~~~~~~~~~~~~ 230 (543)
|+++|++++|+++.++.+++.+++++++++++|+++...+.+.+....+. ....++.++..............
T Consensus 90 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (567)
T PLN02479 90 VPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALG 169 (567)
T ss_pred HHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccc
Confidence 99999999999999999999999999999999999877655444322111 11234444332111101000111
Q ss_pred ceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHH
Q 009114 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~ 310 (543)
.....|++++...............+++++|+|||||||.||||++||+++..........+.+.++|++++.+|++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~ 249 (567)
T PLN02479 170 KGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCN 249 (567)
T ss_pred cCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhh
Confidence 23456777765432211111223345778899999999999999999999876655444456788899999999999999
Q ss_pred HHHHHHH-HHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 311 ERANQVM-TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 311 ~~~~~~~-~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
++...+. .++.|..+++..+++..+++.++++++|++.++|+++..+.+.....
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 304 (567)
T PLN02479 250 GWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE------------------------- 304 (567)
T ss_pred hHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc-------------------------
Confidence 9876543 56677777776789999999999999999999999999886531100
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC--------CC--
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE--------GD-- 459 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~--------~~-- 459 (543)
+....+++|.++++|+++++++.+++++. ++++++.||+||+++.++.... ..
T Consensus 305 ----------------~~~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~ 367 (567)
T PLN02479 305 ----------------TILPLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQ 367 (567)
T ss_pred ----------------ccccccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceeccccccccCcccc
Confidence 00001588999999999999999999875 8899999999998654332210 00
Q ss_pred -CCCCCcCCCCCCeE-EEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCc
Q 009114 460 -NLSGHVGSPNAACE-IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGR 537 (543)
Q Consensus 460 -~~~~~vG~p~~~~e-vkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~ 537 (543)
....++|.+.++++ ++|+|+++++.++.+.. +.|||+++|++++.|||++|+.|++.| .+|||+|||+|++|++|+
T Consensus 368 ~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~-~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~ 445 (567)
T PLN02479 368 ARLNARQGVRYIGLEGLDVVDTKTMKPVPADGK-TMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGY 445 (567)
T ss_pred cccccccCCCcCCcCceeEEcCCCCcccCCCCC-CceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCcc
Confidence 11245788888876 89999666666654321 279999999999999999999999999 689999999999999999
Q ss_pred EEEecC
Q 009114 538 LKIIDR 543 (543)
Q Consensus 538 l~i~gR 543 (543)
++|+||
T Consensus 446 l~~~GR 451 (567)
T PLN02479 446 IEIKDR 451 (567)
T ss_pred EEEecc
Confidence 999998
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=443.22 Aligned_cols=379 Identities=18% Similarity=0.233 Sum_probs=312.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
+++.+.|++.++++||++|+... + +.+||.||.+++.++|++|.+.|. +|++|+|+++|+++|+++++||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 36889999999999999999654 2 359999999999999999999984 8999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++++++.++++.++++.+|++......+... ...++.++. +.+
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~------------------~~~ 126 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEIDE------------------WKR 126 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEehh------------------hhh
Confidence 99999999999999999999999999999999988654443211 011222211 111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~ 318 (543)
....... .........+++++|+|||||||.||||+++|++++..+......+.+.++|+++...|++|...+...+.+
T Consensus 127 ~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~ 205 (487)
T PRK07638 127 MIEKYLP-TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAIST 205 (487)
T ss_pred hhhhccc-cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHH
Confidence 1111111 011112235678999999999999999999999999888877777888999999999999999887777888
Q ss_pred HHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 009114 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (543)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (543)
++.|+++++.+ +++..+++.++++++|+++++|.++..+.+.- .
T Consensus 206 l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-----~------------------------------ 250 (487)
T PRK07638 206 LYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN-----R------------------------------ 250 (487)
T ss_pred HccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----C------------------------------
Confidence 99999999887 68999999999999999999999998886520 0
Q ss_pred hHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC-CCCCCCcCCCCCCeEEE
Q 009114 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIK 475 (543)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~evk 475 (543)
...+.+.++++|++++.++.++++..+ ++.+++.||+||++.++...... ....+++|.|+++++++
T Consensus 251 -----------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 319 (487)
T PRK07638 251 -----------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVR 319 (487)
T ss_pred -----------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEE
Confidence 012455677888999999999999998 68899999999998766544322 34567899999999999
Q ss_pred EeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 476 ivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+| ++++.++.++ .|||+|+|+.++.|||++++.+.+.+ .+|||+|||+|++|+||+++|+||
T Consensus 320 i~d-~~g~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR 382 (487)
T PRK07638 320 ICN-EAGEEVQKGE---IGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGR 382 (487)
T ss_pred EEC-CCCCCCCCCC---CeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEec
Confidence 999 5667676665 89999999999999999999988765 789999999999999999999998
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-52 Score=446.29 Aligned_cols=397 Identities=19% Similarity=0.258 Sum_probs=322.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..++.++|++.++ ||++|+... + +.+||+||.+++.++|.+|.+.|+++|++|+++++|+++|+++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 4689999999887 999999764 2 3499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
|+++|++++++.+....+++..++++++++.++++.... .....+....+.++.++..++. .
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~ 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence 999999888877777888999999999999999986531 1122222234555555554321 1
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~ 312 (543)
...+.++...... ..+.....++++++|+|||||||.||||++||+++...+........+.++|++++.+|++|.+++
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~ 238 (536)
T PRK10946 160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPM 238 (536)
T ss_pred CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccc
Confidence 1234444433222 122334567899999999999999999999999999988877777888999999999999999887
Q ss_pred HH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 313 ~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+...+.....
T Consensus 239 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~----------------------- 295 (536)
T PRK10946 239 SSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS----------------------- 295 (536)
T ss_pred hhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc-----------------------
Confidence 64 566899999998876 6888999999999999999999999988764211100
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCC-CCCCCCCCcCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD-EGDNLSGHVGSP 468 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p 468 (543)
....+++|.+++||+++++++.+.+...+++++++.||+||+........ ......+++|.|
T Consensus 296 -----------------~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p 358 (536)
T PRK10946 296 -----------------RAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRP 358 (536)
T ss_pred -----------------cccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcc
Confidence 00015899999999999999999999999999999999999754332211 122345789999
Q ss_pred C-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 469 N-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 469 ~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+ |+++++|+| ++++.++.++ .|||+++|+.++.|||++++.|++.|+.||||+|||+|++|+||+++|+||
T Consensus 359 ~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR 430 (536)
T PRK10946 359 MSPDDEVWVAD-ADGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGR 430 (536)
T ss_pred cCCCceEEEEC-CCCCCCCCCC---ccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEecc
Confidence 9 899999999 6667777766 899999999999999999999999999999999999999999999999998
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=496.07 Aligned_cols=411 Identities=17% Similarity=0.167 Sum_probs=316.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..+++++|++.++++||++|+.............+.+||+||.++++++|++|.+.|+++|++|+|+++|+++|+++++|
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA 314 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMG 314 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHH
Confidence 36899999999999999999976410000012346799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC---HHHHHhhccC----CCCeeEEEEeCCCCCCCCCCCcCCC
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---LNSLLSCLSE----VPTVRLIVVIGGIDDQIPSLPITTG 230 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~---~~~l~~~~~~----~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (543)
|+++|+++||++|.++++++.+++++++++++|++... ...+...... ...+..+...+... .... .
T Consensus 315 ~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~ 388 (1389)
T TIGR03443 315 VLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGS-LVGG-----S 388 (1389)
T ss_pred HHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccc-cccc-----c
Confidence 99999999999999999999999999999999987542 1111111110 01111111111100 0000 0
Q ss_pred ceeeeHHHHHhcCc--cCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHH
Q 009114 231 VQILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 231 ~~~~~~~~l~~~~~--~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h 308 (543)
.. ....++..... ..........++|+++|+|||||||.||||+++|+++++.+.+....+.+.++|+++++.|++|
T Consensus 389 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~ 467 (1389)
T TIGR03443 389 LE-GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAH 467 (1389)
T ss_pred cc-cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCcee
Confidence 00 00001100000 0011122356899999999999999999999999999999887777788999999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 309 IYERANQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
..++...+.+++.|+++++.+ .++..+++.|+++++|+++++|++++.+.....
T Consensus 468 d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------------------- 525 (1389)
T TIGR03443 468 DPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---------------------- 525 (1389)
T ss_pred cchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc----------------------
Confidence 998888889999999999876 367889999999999999999999987753100
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC----C
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----D 459 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~----~ 459 (543)
....++|.+++||+++++.+.+.++..+ +++++++||+||++..++..... +
T Consensus 526 -----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 582 (1389)
T TIGR03443 526 -----------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSD 582 (1389)
T ss_pred -----------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccc
Confidence 0014899999999999999999888765 78899999999997655532211 1
Q ss_pred -------CCCCCcCCCCCCeEEEEeecCC-CCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC------------
Q 009114 460 -------NLSGHVGSPNAACEIKLVDVPE-MNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------------ 519 (543)
Q Consensus 460 -------~~~~~vG~p~~~~evkivd~~~-~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~------------ 519 (543)
....++|.|+++++++|+|.++ ...++.|. .|||||+|++|++||+++|++|+++|.
T Consensus 583 ~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~---~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~ 659 (1389)
T TIGR03443 583 STFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGE---VGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWID 659 (1389)
T ss_pred cchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCC---ceEEEecccccchhcCCChhHhhhhccCCcccCcccccc
Confidence 1245799999999999999544 35566665 899999999999999999999999983
Q ss_pred ----------------CCCeeeccceEEEecCCcEEEecC
Q 009114 520 ----------------EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 520 ----------------~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.+|||+|||+|++++||.|+|+||
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR 699 (1389)
T TIGR03443 660 LDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGR 699 (1389)
T ss_pred cccccccccccccCCCccceeecCCceeEcCCCCEEEecc
Confidence 268999999999999999999999
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=440.58 Aligned_cols=388 Identities=23% Similarity=0.313 Sum_probs=316.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.++.++|++.++++|+++|+... + +.+||.||.+++.++|.+|.+.|++++++|+++++|+++|+++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~ 72 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAA 72 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57899999999999999998664 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++.+++.++++.++++.++++.+...... . ....+.++.... ..+..
T Consensus 73 ~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~------~~~~~~~~~~~~-------------~~~~~ 132 (497)
T PRK06145 73 SYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L------ETPKIVIDAAAQ-------------ADSRR 132 (497)
T ss_pred HhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c------ccceEEecCccc-------------chhHH
Confidence 999999999999999999999999999999999876543321 0 111222222110 01111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVM 317 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~-~~~ 317 (543)
+... ...........++++++++|||||||.||+|++||+++...+......+.+..+|++++.+|++|.+++.. .+.
T Consensus 133 ~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 211 (497)
T PRK06145 133 LAQG-GLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIA 211 (497)
T ss_pred Hhcc-CCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHH
Confidence 1111 11111223456789999999999999999999999999876655555567889999999999999998876 466
Q ss_pred HHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCch
Q 009114 318 TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (543)
Q Consensus 318 ~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~ 396 (543)
+++.|+++.+.+ .++..+++.++++++|++.++|.++..+......
T Consensus 212 ~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--------------------------------- 258 (497)
T PRK06145 212 VLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--------------------------------- 258 (497)
T ss_pred HHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc---------------------------------
Confidence 788999998876 6999999999999999999999999887652100
Q ss_pred hhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC--CCCCCCcCCCCCCeE
Q 009114 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACE 473 (543)
Q Consensus 397 ~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~e 473 (543)
+....+++|.+++||+++++++.+.+++.| ++++++.||+||+++.++..... ....+++|.|+++++
T Consensus 259 ---------~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 329 (497)
T PRK06145 259 ---------DRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVE 329 (497)
T ss_pred ---------cccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCce
Confidence 000014799999999999999999999988 57899999999998765543322 234578999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 474 vkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++| +++...+.+. .|||+++|++++.||+++++.|++.| .++||+|||+|++|+||+++|+||
T Consensus 330 ~~i~~-~~~~~~~~~~---~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR 394 (497)
T PRK06145 330 IRIAD-GAGRWLPPNM---KGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDR 394 (497)
T ss_pred EEEEC-CCCCCCCCCC---ceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEecc
Confidence 99999 5666666665 89999999999999999999999999 689999999999999999999998
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=530.25 Aligned_cols=397 Identities=22% Similarity=0.334 Sum_probs=317.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|++++|++.++++||++|+.+. ++..++++++||+||.++++++|++|+..| ++||+|+|+++|+++|+++++|
T Consensus 8 ~~tl~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~lTy~el~~~~~~lA~~L~~~~-~~gd~V~i~~~~s~~~~~~~la 83 (4334)
T PRK05691 8 PLTLVQALQRRAAQTPDRLALRFL---ADDPGEGVVLSYRDLDLRARTIAAALQARA-SFGDRAVLLFPSGPDYVAAFFG 83 (4334)
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cCCCCcceEeeHHHHHHHHHHHHHHHHhcC-CCCCEEEEEcCCCHHHHHHHHH
Confidence 379999999999999999999886 555566788999999999999999998764 9999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCH-----HHHHHHHHhcCccEEEecCcCHHHHHhhccCC-CCeeEEEEeCCCCCCCCCCCcCCCc
Q 009114 158 CSAYSFISVPLYDTLGP-----DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEV-PTVRLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~-----~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~-~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
|+++|+++||++|..+. +.+.+++++++++++|++....+.+.+..... .....++.++....
T Consensus 84 ~l~aG~~~vp~~p~~~~~~~~~~rl~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 152 (4334)
T PRK05691 84 CLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAAANAPELLCVDTLDP----------- 152 (4334)
T ss_pred HHHhCceEeccCCcccccccHHHHHHHHHHhCCCCEEEECHHHHHHHHhhhhcccccCceEEEcccccc-----------
Confidence 99999999999997654 56999999999999999987666655443211 11233444433210
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCccc--CCCcEEEEeCChHHH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHI 309 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~--~~~d~~l~~lpl~h~ 309 (543)
... .........++|+|+|+|||||||.||||++||+|+++.+......+.+ +++|++++++|++|.
T Consensus 153 ----------~~~-~~~~~~~~~~~d~a~i~yTSGTTG~PKGV~lsH~~l~~~~~~~~~~~~~~~~~~d~~l~~lp~~h~ 221 (4334)
T PRK05691 153 ----------ALA-EAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHD 221 (4334)
T ss_pred ----------ccc-ccccCCCCCcCCeEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHhCCCCCCCceEEEeccchhh
Confidence 000 0111234578999999999999999999999999999888776655555 899999999999999
Q ss_pred HHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 009114 310 YERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383 (543)
Q Consensus 310 ~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k 383 (543)
++++. .+.+++.|+++++.+. ++..+.+.++++++|+....|..+..+...+....
T Consensus 222 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~p~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~------------------ 283 (4334)
T PRK05691 222 MGLIGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGTISGGPDFAYRLCSERVSESA------------------ 283 (4334)
T ss_pred hHHHHHHHHHHHCCCEEEEeCcHHHhhCHHHHHHHHHHcCCEEecCCchHHHHHHHhcCHHH------------------
Confidence 99876 5678999999998762 78899999999999987766665554433211100
Q ss_pred HHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC------CccccccChhhhccccccCCC
Q 009114 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDE 457 (543)
Q Consensus 384 ~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~ 457 (543)
.+....+++|.+++||+|+++++.+.+...|. ..++++||+||++.+++....
T Consensus 284 ---------------------~~~~~l~~lr~~~~gge~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~t~~~~ 342 (4334)
T PRK05691 284 ---------------------LERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFFASYGLAEATLFVSGGRR 342 (4334)
T ss_pred ---------------------hcccccccceEEEECcccCCHHHHHHHHHHhhhcCCCccccccCcchhhheeeeecccC
Confidence 01111268999999999999999999988762 258999999999876653321
Q ss_pred C----------------------CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhh
Q 009114 458 G----------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK 515 (543)
Q Consensus 458 ~----------------------~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~ 515 (543)
. ....+++|+|+|+++++|+|++++..++.|. .|||||+||+||+||||+|++|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~Ivd~~~~~~~~~g~---~GEl~v~Gp~v~~GY~~~~~~T~ 419 (4334)
T PRK05691 343 GQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVDPQSLEVLGDNR---VGEIWASGPSIAHGYWRNPEASA 419 (4334)
T ss_pred CCCCceEeecHhHHhcCCccCCCCCceeccCCccCCCEEEEEcCCCCcCCCCCC---eEEEEecCCccchhhcCChhhhH
Confidence 1 1123589999999999999988888888887 89999999999999999999999
Q ss_pred hhcC---CCCeeeccceEEEecCCcEEEecC
Q 009114 516 EVID---EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 516 ~~~~---~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|. .++||||||+|++ +||.|+|+||
T Consensus 420 ~~f~~~~g~~w~rTGDlg~~-~dG~l~i~GR 449 (4334)
T PRK05691 420 KTFVEHDGRTWLRTGDLGFL-RDGELFVTGR 449 (4334)
T ss_pred HHhhcCCCCceeecCCeEEE-ECCEEEEEee
Confidence 9983 3459999999987 4899999998
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=442.36 Aligned_cols=407 Identities=22% Similarity=0.281 Sum_probs=324.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.++|+++++++||++++... .+ ++.+.+||+||.++++++|++|.+.|+++||+|+++++|+++|+++++||
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~ 84 (542)
T PRK06018 10 LLCHRIIDHAARIHGNREVVTRS--VE---GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGI 84 (542)
T ss_pred CCHHHHHHHHHHhCCCceEEEee--cc---CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHH
Confidence 59999999999999999999743 12 23567999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++.+++.++++.++++.++++.+..+.+.+.....+.++.++...+... .. .....+...|++
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~ 160 (542)
T PRK06018 85 MGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAH-MP---QTTLKNAVAYEE 160 (542)
T ss_pred HhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEeccccc-cc---ccCccccccHHH
Confidence 99999999999999999999999999999999999888877766655666666666543211 00 011113345666
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHH-HHH-HhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI-ASV-AGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~-~~~-~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~ 316 (543)
++..... ........++++++|+|||||||.||||++||++++ ... ........+..+|+++.++|++|.+++...+
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~ 239 (542)
T PRK06018 161 WIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAF 239 (542)
T ss_pred HhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHH
Confidence 6544321 112234567889999999999999999999999743 222 2233346788999999999999999988778
Q ss_pred HHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 009114 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (543)
Q Consensus 317 ~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (543)
.+++.|+++++.. .++..+++.++++++|++.++|+++..+.+......
T Consensus 240 ~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~----------------------------- 290 (542)
T PRK06018 240 SAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG----------------------------- 290 (542)
T ss_pred hhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC-----------------------------
Confidence 8899999998864 578899999999999999999999998865321100
Q ss_pred chhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-----------CCCC
Q 009114 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (543)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (543)
...+++|.+++||+++++++.+.+++ +++++++.||+||++.+.+.....+ ....
T Consensus 291 -------------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (542)
T PRK06018 291 -------------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQ 356 (542)
T ss_pred -------------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccCCchhhhhccc
Confidence 00148999999999999999999999 8999999999999986654321110 1235
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|.++++++|+| +++...+.+.. ..|||+++|++++.|||++ +.+.++.+|||+|||+|+++++|++++.||
T Consensus 357 ~~G~~~~g~~i~v~d-~~~~~~~~~~~-~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR 431 (542)
T PRK06018 357 KQGYPPFGVEMKITD-DAGKELPWDGK-TFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDAYGYMRITDR 431 (542)
T ss_pred cCCCCCCCcEEEEEC-CCCCCCCCCCC-ceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcCCccEEEEec
Confidence 799999999999999 45555543211 2699999999999999984 345667899999999999999999999998
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=438.58 Aligned_cols=397 Identities=24% Similarity=0.344 Sum_probs=324.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|.+.++++|+++|+.+. + +.+||+||.+++.++|..|.+.|+++|++|+++++|+++|+++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l 80 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3468999999999999999999664 2 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCc-CHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ-TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~-~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
||++.|++++|+++..+.+++.++++.++++.++++.. ....+.......+.++.++.++.... ...
T Consensus 81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 148 (524)
T PRK06188 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD------------GVD 148 (524)
T ss_pred HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc------------hhh
Confidence 99999999999999999999999999999999999876 44444443334455555555543210 001
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
+.+....... ........++++++|+|||||||.||+|++||+++...+......+.+..+|++++.+|++|.+++. .
T Consensus 149 ~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~ 226 (524)
T PRK06188 149 LLAAAAKFGP-APLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-F 226 (524)
T ss_pred HHHhhhccCc-ccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-H
Confidence 1111111000 1111223456799999999999999999999999999888777778889999999999999998875 4
Q ss_pred HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 009114 316 VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (543)
Q Consensus 316 ~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (543)
+.+++.|+++++.+ .++..+++.++++++|+++++|+++..+.+.....
T Consensus 227 ~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~------------------------------ 276 (524)
T PRK06188 227 LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR------------------------------ 276 (524)
T ss_pred HHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc------------------------------
Confidence 66788999999887 68999999999999999999999998886531000
Q ss_pred chhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC------CCCCCCcCCC
Q 009114 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG------DNLSGHVGSP 468 (543)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~------~~~~~~vG~p 468 (543)
.....++|.+++||++++++..+.+.+.+++.+++.||+||++..++..... ....+++|.|
T Consensus 277 ------------~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p 344 (524)
T PRK06188 277 ------------TRDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRP 344 (524)
T ss_pred ------------CCCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccc
Confidence 0011589999999999999998888888899999999999997555543322 1345789999
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 469 ~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++++++|+| +++..++.+. .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++||.++|.||
T Consensus 345 ~~g~~v~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR 414 (524)
T PRK06188 345 TPGLRVALLD-EDGREVAQGE---VGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDR 414 (524)
T ss_pred cCCcEEEEEc-CCCCCCCCCC---eeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEec
Confidence 9999999999 5566666665 89999999999999999999999999 689999999999999999999998
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=397.03 Aligned_cols=398 Identities=21% Similarity=0.269 Sum_probs=343.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+|+.+++.+++.++||++|+... + +.+||+||.+++.++|.+|+++|+++||+|.+-+||..|+++++|
T Consensus 26 ~d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F 96 (542)
T COG1021 26 QDRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF 96 (542)
T ss_pred cCCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence 3589999999999999999999553 2 338999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCc-----CHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCc
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ-----TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~-----~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
|.+++|+.+|.--|..-..++.+...+++++.+|++.. ..+.+.+...+.+.++.+++.++.++.
T Consensus 97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~---------- 166 (542)
T COG1021 97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP---------- 166 (542)
T ss_pred HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc----------
Confidence 99999999999889999999999999999999998863 345566677788899999888654321
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~ 311 (543)
...+..+........+..+.++++++++..+.||||.||-+..||..+..++....+.+.+++.++|++.+|.+|-|-
T Consensus 167 --~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfp 244 (542)
T COG1021 167 --SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFP 244 (542)
T ss_pred --chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCC
Confidence 112222233333344556678899999999999999999999999999999888888899999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
+.+ .+..++.|+++++.+ .++...+..|+++++|+...||.+-..+++.......
T Consensus 245 lssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~---------------------- 302 (542)
T COG1021 245 LSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERA---------------------- 302 (542)
T ss_pred CCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccC----------------------
Confidence 887 677899999999987 7999999999999999999999999988775433211
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC---CCCCCc
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHV 465 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---~~~~~v 465 (543)
..++||++-.||+.+++++.+.+...+||.+-|.+||.|.- ...+.-+| .-..+-
T Consensus 303 --------------------~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGL--vnyTRLDDp~E~i~~TQ 360 (542)
T COG1021 303 --------------------DLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGL--VNYTRLDDPPEIIIHTQ 360 (542)
T ss_pred --------------------CchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhh--hcccccCCchHheeecC
Confidence 12699999999999999999999999999999999999953 33333333 234678
Q ss_pred CCCC-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 466 GSPN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 466 G~p~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+|+ |.-|++|+| ++++.+..|+ .|||..|||..++|||+.|+.++.+||.+|||+|||+.++|+||+|.+.||
T Consensus 361 GrPlsP~DEvrvvD-~dg~pv~pGE---~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR 435 (542)
T COG1021 361 GRPLSPDDEVRVVD-ADGNPVAPGE---VGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGR 435 (542)
T ss_pred CCcCCCcceeEEec-CCCCCCCCCC---cceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEee
Confidence 9998 789999999 7888888887 899999999999999999999999999999999999999999999999998
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=449.56 Aligned_cols=412 Identities=16% Similarity=0.138 Sum_probs=309.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecC--cccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDG--TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
+-...+|++.+.++||++|+.+. +. ..++.+.+||+||.+++.++|++|+++|+++||+|+++++|++|++++++
T Consensus 175 n~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~L 251 (728)
T PLN03052 175 NVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYL 251 (728)
T ss_pred EHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 33455676666678999999886 32 12346789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH------HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCC
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL------NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (543)
||+++|++++|+++.++++++.+++++++++++|+++... +.+.++..... ..++++........... .
T Consensus 252 A~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~~~~~~---~ 326 (728)
T PLN03052 252 AIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKSVRVKL---R 326 (728)
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCcccccc---c
Confidence 9999999999999999999999999999999999986432 11111111111 12333322111000000 0
Q ss_pred ceeeeHHHHHhcCccC--C--CCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCCh
Q 009114 231 VQILTYSNLLSQGRSN--L--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPL 306 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~~--~--~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl 306 (543)
....+|++++...... + .+.....++++++|+|||||||.||||+++|++++..+......+++.++|+++++.|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l 406 (728)
T PLN03052 327 EGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNL 406 (728)
T ss_pred cCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCc
Confidence 1235688876543211 1 11122356899999999999999999999999987766555555778899999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEecC--ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 307 AHIYERANQVMTVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~i~~~~~--~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
.|+++....+.++..|++++++.+ +...+++.++++++|++.++|+++..+.+.-.
T Consensus 407 ~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~---------------------- 464 (728)
T PLN03052 407 GWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC---------------------- 464 (728)
T ss_pred HHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC----------------------
Confidence 999998777789999999999985 45779999999999999999999988754200
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC-CccccccChhhhccccccCCC-CCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDE-GDNLS 462 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~-~~~~~ 462 (543)
..-+| .+++|.+++||++++++...++...++ +++++.||+||+++.+....+ .....
T Consensus 465 ---------~~~~d-----------lssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~ 524 (728)
T PLN03052 465 ---------MAGLD-----------WSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAF 524 (728)
T ss_pred ---------cccCC-----------hhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCC
Confidence 00011 158999999999999999888888765 579999999999765443322 23456
Q ss_pred CCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCcc--chhhhcCChhhhhhhcC------CCCeeeccceEEEec
Q 009114 463 GHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL--IFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIP 534 (543)
Q Consensus 463 ~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~--v~~gY~~~~~~t~~~~~------~~gw~~TGDig~~~~ 534 (543)
+++|.|.++++++|+| ++++.++.+++ ..|||+++++. ...+|+++. .++.-|. .++||+|||+|++|+
T Consensus 525 g~~g~p~~g~~v~v~d-~~g~~v~~g~~-~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl~~~d~ 601 (728)
T PLN03052 525 AAFSTPAMGCKLFILD-DSGNPYPDDAP-CTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDIFERTS 601 (728)
T ss_pred CccccCCCCceEEEEC-CCCCCCCCCCC-ceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCceEEECC
Confidence 8899999999999999 66777766642 16999998652 335677664 3343342 234999999999999
Q ss_pred CCcEEEecC
Q 009114 535 GGRLKIIDR 543 (543)
Q Consensus 535 ~G~l~i~gR 543 (543)
||+++|+||
T Consensus 602 dG~l~i~GR 610 (728)
T PLN03052 602 GGYYRAHGR 610 (728)
T ss_pred CCeEEEEec
Confidence 999999998
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=436.41 Aligned_cols=373 Identities=20% Similarity=0.271 Sum_probs=300.7
Q ss_pred HHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeE
Q 009114 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (543)
Q Consensus 86 ~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~ 165 (543)
+..++.+||++++... .++ +.+||+|+.+++.++|.+|.+.|+++||+|+|+++|+++|+++++||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~--~~~-----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL--ALG-----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec--CCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 3456789999998652 122 359999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCcc
Q 009114 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (543)
Q Consensus 166 vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (543)
+|+++.++++++.+++++++++++|+++..... . . ....++++......
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~---~----------------------~~~~~~~~~~~~~~ 123 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAG------R---T----------------------DVEDLAAFIASADA 123 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcc------c---c----------------------cccchhhhhhhccc
Confidence 999999999999999999999999997643210 0 0 00112222111111
Q ss_pred -CCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH-HHHHHhCc
Q 009114 246 -NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ-VMTVYSGV 323 (543)
Q Consensus 246 -~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~-~~~l~~G~ 323 (543)
.........++++++++|||||||.||+|.+||+++...+........+..+|++++.+|++|++++... +.++..|+
T Consensus 124 ~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~ 203 (488)
T PRK09088 124 LEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG 203 (488)
T ss_pred cccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence 0111223456889999999999999999999999998877766655667899999999999999998874 45788899
Q ss_pred EEEEec-CChHhHHHHHH--hhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 009114 324 AVGFYQ-GDNMKLMDDMA--ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (543)
Q Consensus 324 ~i~~~~-~~~~~l~~~i~--~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~ 400 (543)
++++.+ .++..++..+. ++++|+++++|.+++.+..... .
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~----------------------------------~--- 246 (488)
T PRK09088 204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG----------------------------------F--- 246 (488)
T ss_pred EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC----------------------------------c---
Confidence 998876 57888888876 4899999999999987754200 0
Q ss_pred hHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC---CCCCCCCcCCCCCCeEEEEe
Q 009114 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE---GDNLSGHVGSPNAACEIKLV 477 (543)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~evkiv 477 (543)
.....+++|.+++||++++.+..+.+... ++++++.||+||+++....... .....+++|.|.++++++|+
T Consensus 247 -----~~~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~ 320 (488)
T PRK09088 247 -----DAAALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVV 320 (488)
T ss_pred -----CccccccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEE
Confidence 00011489999999999999988887764 8999999999999865432211 12456889999999999999
Q ss_pred ecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 478 DVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 478 d~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
| +++...+.+. .|||+|+|++++.||+++++.|++.|+.+|||+|||+|++|++|.++|.||
T Consensus 321 d-~~~~~~~~g~---~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR 382 (488)
T PRK09088 321 D-DQGNDCPAGV---PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDR 382 (488)
T ss_pred C-CCCCCCcCCC---ceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEecc
Confidence 9 5666666665 899999999999999999999999998899999999999999999999998
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=524.43 Aligned_cols=385 Identities=20% Similarity=0.273 Sum_probs=324.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...+++++|++.++++||++|+.+. +. .+||+||.++++++|+.|.+.|+++|++|+|+++|++++++++
T Consensus 3092 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~~------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467 3092 PSERLVHQLIEAQVARTPEAPALVFG---DQ------QLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred CccccHHHHHHHHHHhCCCcceEeeC---Cc------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence 34579999999999999999999775 33 4999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++|||++.++.+.+.++++++++++||++....+.+... ... .++.++...
T Consensus 3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~----~~~-~~~~~~~~~---------------- 3221 (3956)
T PRK12467 3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP----AGD-TALTLDRLD---------------- 3221 (3956)
T ss_pred HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc----cCC-ceeeecchh----------------
Confidence 99999999999999999999999999999999999987654432111 111 122222210
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
........+.....++++++|+|||||||.||||+++|+++.+.+.+....+.++++|++++++|++|..+....
T Consensus 3222 -----~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 3296 (3956)
T PRK12467 3222 -----LNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERF 3296 (3956)
T ss_pred -----hcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHH
Confidence 001111122334678999999999999999999999999999999888888899999999999999999998888
Q ss_pred HHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
+.+++.|+++++.+ .++..+++.|.++++|++..+|+++..+.+...
T Consensus 3297 ~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------------ 3346 (3956)
T PRK12467 3297 LWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------------------------------ 3346 (3956)
T ss_pred HHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc------------------------------
Confidence 99999999999987 478999999999999999999999988765210
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC-C----CCCCCcC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-D----NLSGHVG 466 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~-~----~~~~~vG 466 (543)
....+++|.+++||+++++++.+.++..+ ++.++++||+||++..++..... + ....++|
T Consensus 3347 --------------~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG 3412 (3956)
T PRK12467 3347 --------------GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIG 3412 (3956)
T ss_pred --------------ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCc
Confidence 00115799999999999999999998877 57899999999998766543221 1 2336899
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCC-------eeeccceEEEecCCcEE
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG-------WFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~g-------w~~TGDig~~~~~G~l~ 539 (543)
+|+++++++|+| ++++.++.|. .|||+|+|++|++||+|+|++|+++|..++ ||+|||+|++++||+|+
T Consensus 3413 ~p~~~~~~~v~d-~~~~~vp~G~---~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~ 3488 (3956)
T PRK12467 3413 RPVAGRSIYVLD-GQLNPVPVGV---AGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIE 3488 (3956)
T ss_pred cccCCCEEEEEC-CCCCCCCCCC---CceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEE
Confidence 999999999999 6678888887 899999999999999999999999996554 69999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 3489 ~~GR 3492 (3956)
T PRK12467 3489 YLGR 3492 (3956)
T ss_pred Eecc
Confidence 9998
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-51 Score=440.10 Aligned_cols=410 Identities=23% Similarity=0.302 Sum_probs=321.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..++.++|++.++.+||++++... + +.+||.||.+++.++|.+|.++|+++|++|+++++|+++|+++++|
T Consensus 32 ~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 102 (567)
T PRK06178 32 ERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFG 102 (567)
T ss_pred cccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 468999999999999999998664 3 2499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCC--CCCCC--CCc-C--CC
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--DQIPS--LPI-T--TG 230 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~--~~~~~--~~~-~--~~ 230 (543)
|+++|++++|++|.++.+++.+++++++++++++++...+.+.+..... .++.+++.+... +.... ... . ..
T Consensus 103 ~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (567)
T PRK06178 103 ILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181 (567)
T ss_pred HHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEecccccccccccccccccccccc
Confidence 9999999999999999999999999999999999998888777665443 344444433211 00000 000 0 00
Q ss_pred ceeeeHHHHHhcCcc--CCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc-CcccCCCcEEEEeCChH
Q 009114 231 VQILTYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPLA 307 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~--~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-~~~~~~~d~~l~~lpl~ 307 (543)
.....+.++...... .........++++++|+|||||||.||||++||++++..+..... ...+.++|++++++|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 261 (567)
T PRK06178 182 LAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEF 261 (567)
T ss_pred ccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchH
Confidence 001122233222111 111223456899999999999999999999999998876554433 25678899999999999
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 009114 308 HIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (543)
Q Consensus 308 h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (543)
|++++.. .+.+++.|+++++.+ .++..+++.++++++|.+..+|..+..+..... .
T Consensus 262 ~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~-----~----------------- 319 (567)
T PRK06178 262 WIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR-----F----------------- 319 (567)
T ss_pred HHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-----C-----------------
Confidence 9999865 567899999999887 689999999999999999999998877654100 0
Q ss_pred HHhcCCCCCchhhHHhHHHHHHHcCCcEEEEE--EcCCCCCHHHHHHHHHhhCCcccc-ccChhhhccccccCCC---C-
Q 009114 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMG--SGASPLSPDVLDFLKICFGGRVTE-GYGMTETSCLISQLDE---G- 458 (543)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~--~gga~l~~~~~~~~~~~~~~~i~~-~YG~TE~~~~~~~~~~---~- 458 (543)
......++|.+. ++++++++++.+.++..+|..+++ .||+||++..+..... .
T Consensus 320 --------------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~ 379 (567)
T PRK06178 320 --------------------AEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD 379 (567)
T ss_pred --------------------CCCCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCc
Confidence 000013566554 445899999999999999887775 7999998765443221 1
Q ss_pred ---CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecC
Q 009114 459 ---DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (543)
Q Consensus 459 ---~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~ 535 (543)
...++++|.|+|+++++|+|+++++.++.++ .|||+++|++++.|||++++.|++.| .+|||+|||+|++++|
T Consensus 380 ~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~---~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~ 455 (567)
T PRK06178 380 FDLLSQPVFVGLPVPGTEFKICDFETGELLPLGA---EGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQ 455 (567)
T ss_pred cccccCCcccccccCCcEEEEEcCCCCCcCCCCC---ceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecC
Confidence 1345679999999999999977788887776 89999999999999999999999988 6899999999999999
Q ss_pred CcEEEecC
Q 009114 536 GRLKIIDR 543 (543)
Q Consensus 536 G~l~i~gR 543 (543)
|+++|+||
T Consensus 456 g~l~i~GR 463 (567)
T PRK06178 456 GFLHYLGR 463 (567)
T ss_pred CeEEEEec
Confidence 99999998
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=443.07 Aligned_cols=378 Identities=20% Similarity=0.295 Sum_probs=289.8
Q ss_pred HHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHh
Q 009114 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSA 160 (543)
Q Consensus 81 l~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~ 160 (543)
+.+.|++.++++|+++|+.+. ++ +.++++||+||.++++++|++|.++ ++||+|+|+++|++||+++++||++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~---~~--~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~ 76 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDR---ES--GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWL 76 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCC---CC--CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 788999999999999998664 32 3468899999999999999999988 8999999999999999999999999
Q ss_pred cCCeEEecCCCC--------CHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 161 YSFISVPLYDTL--------GPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 161 ~G~~~vpl~~~l--------~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
+|++++ +.+.. ..+++.+++++++++++|++....+.+...... +.+.+.
T Consensus 77 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~~-------------- 134 (525)
T PRK05851 77 AGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHDL-------------- 134 (525)
T ss_pred cCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------cccccc--------------
Confidence 999865 44321 234566789999999999987765544332110 111110
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccC-CCcEEEEeCChHHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY-PSDVYISYLPLAHIYE 311 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~-~~d~~l~~lpl~h~~~ 311 (543)
.+...... ..+.....++|+++|+|||||||.||||++||+++++.+......+.+. ++|++++++|++|.++
T Consensus 135 ----~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 208 (525)
T PRK05851 135 ----ATAAHTNR--SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMG 208 (525)
T ss_pred ----cccccccc--cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCcc
Confidence 00000000 0111234678999999999999999999999999999888777777888 8999999999999999
Q ss_pred HHHHHHHHHhCcEEEEec---C--ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 312 RANQVMTVYSGVAVGFYQ---G--DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 312 ~~~~~~~l~~G~~i~~~~---~--~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
+...+.+++.|+++++.+ + ++..+++.+.++++|++.. |.++..++......
T Consensus 209 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~-p~~~~~~l~~~~~~---------------------- 265 (525)
T PRK05851 209 LAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAA-PNFAYNLIGKYARR---------------------- 265 (525)
T ss_pred HHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeC-CcHHHHHHHHhhcc----------------------
Confidence 988888999999999875 2 6778999999999998755 54443333211000
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh---hCC---ccccccChhhhccccccCCCC--
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC---FGG---RVTEGYGMTETSCLISQLDEG-- 458 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~---~~~---~i~~~YG~TE~~~~~~~~~~~-- 458 (543)
......+++|.+++||+++++++.+.+.+. +|+ .+++.||+||+++.++...+.
T Consensus 266 ------------------~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 327 (525)
T PRK05851 266 ------------------VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIG 327 (525)
T ss_pred ------------------ccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCC
Confidence 000001489999999999999999988764 454 499999999997665543221
Q ss_pred -------------CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeee
Q 009114 459 -------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525 (543)
Q Consensus 459 -------------~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~ 525 (543)
....+++|+|+++++++|+|.++...++.++ .|||||+|++++.|||++|+.+ .+|||+
T Consensus 328 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~---~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~ 399 (525)
T PRK05851 328 LRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGRE---IGEIEIRGASMMSGYLGQAPID-----PDDWFP 399 (525)
T ss_pred ceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCC---eEEEEEecCchhhccccCCccC-----CCCcee
Confidence 1234689999999999999955444455555 8999999999999999998743 589999
Q ss_pred ccceEEEecCCcEEEecC
Q 009114 526 TGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 526 TGDig~~~~~G~l~i~gR 543 (543)
|||+|+++ +|+|+|+||
T Consensus 400 TGDl~~~~-~G~l~~~GR 416 (525)
T PRK05851 400 TGDLGYLV-DGGLVVCGR 416 (525)
T ss_pred ccceEEEE-CCEEEEEee
Confidence 99999997 799999998
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=433.90 Aligned_cols=410 Identities=26% Similarity=0.370 Sum_probs=319.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++.+|+++|+... + +.+||.||.++++++|.+|.++|+.+|++|+++++|+++|+++++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 89 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF 89 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3469999999999999999998664 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC--HHHHHhhccCCCCeeEEEEeCCCCCCCCC---CCcCCCc
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT--LNSLLSCLSEVPTVRLIVVIGGIDDQIPS---LPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~--~~~l~~~~~~~~~l~~ii~~~~~~~~~~~---~~~~~~~ 231 (543)
||+++|+++||+++.++.+++.+++++++++.+|+++.. .+.+.+.... ..+..+++++........ .......
T Consensus 90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (541)
T TIGR03205 90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWGKVGTPQAPIPADP 168 (541)
T ss_pred HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccccccccccccCCCc
Confidence 999999999999999999999999999999999997631 2222222111 123344444432110000 0001122
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc-----CcccCCCcEEEEeCCh
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-----GTKFYPSDVYISYLPL 306 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~lpl 306 (543)
...+++++...... ........++++++++|||||||.||||+++|+++......... .......+++++.+|+
T Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 247 (541)
T TIGR03205 169 RIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPL 247 (541)
T ss_pred ccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccH
Confidence 34667777653222 12223456789999999999999999999999998765442211 1122345799999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 307 AHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
+|.+++.. .+.++..|+++.+.. .++..+++.|+++++|++.++|.++..+.+...
T Consensus 248 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 305 (541)
T TIGR03205 248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS---------------------- 305 (541)
T ss_pred HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc----------------------
Confidence 99999877 456788999988876 689999999999999999999999987754100
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC-CCCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSG 463 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~ 463 (543)
.+.....++|.+++||+++++++.++++..+++++++.||+||++..++.... .....+
T Consensus 306 --------------------~~~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 365 (541)
T TIGR03205 306 --------------------LEKRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPG 365 (541)
T ss_pred --------------------ccccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCC
Confidence 00001148999999999999999999999899999999999999876654432 223467
Q ss_pred CcCCCCCCeEEEEeecC-CCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEec
Q 009114 464 HVGSPNAACEIKLVDVP-EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~-~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~g 542 (543)
++|.|+++++++|++.+ +++.++.++ .|||+++|++++.||+++|+.|++.| .++||+|||++++++||+++|+|
T Consensus 366 ~~G~~~~~~~~~v~~~d~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~G 441 (541)
T TIGR03205 366 SIGLMLPGIELDVVSLDDPTKVLPPGE---VGELRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVD 441 (541)
T ss_pred CcceeccCceeEEEecCCCCccCCCCC---eeEEEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEc
Confidence 89999999999987643 344555554 89999999999999999999999999 58899999999999999999999
Q ss_pred C
Q 009114 543 R 543 (543)
Q Consensus 543 R 543 (543)
|
T Consensus 442 R 442 (541)
T TIGR03205 442 R 442 (541)
T ss_pred c
Confidence 8
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=439.47 Aligned_cols=411 Identities=25% Similarity=0.367 Sum_probs=323.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...++.++|.+.+.++|+++|+... + +.+||+||.+++.++|.+|. +.|+++|++|+++++|++++++++
T Consensus 23 ~~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~ 93 (560)
T PRK08751 23 QFRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIAT 93 (560)
T ss_pred CCCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 3468999999999999999998653 2 34999999999999999997 689999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCC--C--C----------
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--D--Q---------- 221 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~--~--~---------- 221 (543)
+||+++|++++|++|.++.+++.+++++++++.+|+++.....+.......+ .+.++.++... . .
T Consensus 94 lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 94 FGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred HHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcccccchhhhhhhhh
Confidence 9999999999999999999999999999999999999887766655544433 23333322100 0 0
Q ss_pred CCCCC-cCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcc----cCC
Q 009114 222 IPSLP-ITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK----FYP 296 (543)
Q Consensus 222 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~----~~~ 296 (543)
..... .........|.+....+.....+.....++++++++|||||||.||||.+||+++...+......+. +.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~ 252 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEE 252 (560)
T ss_pred hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCC
Confidence 00000 0000112345555544333223334456789999999999999999999999999887665433322 333
Q ss_pred -CcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchH
Q 009114 297 -SDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLR 372 (543)
Q Consensus 297 -~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~ 372 (543)
++++++.+|++|.+++.. .+.++..|+++.+.. .++..+++.++++++|++.++|.++..+.+... .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~------- 323 (560)
T PRK08751 253 GCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPG--F------- 323 (560)
T ss_pred CCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcC--c-------
Confidence 367889999999999876 355666777766654 588999999999999999999999988764200 0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhcccc
Q 009114 373 ERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI 452 (543)
Q Consensus 373 ~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 452 (543)
.-+| .+++|.+++||+++++++.+.+++.+++++++.||+||+++.+
T Consensus 324 ----------------------~~~~-----------l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~ 370 (560)
T PRK08751 324 ----------------------DQID-----------FSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAA 370 (560)
T ss_pred ----------------------CCcc-----------hhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCce
Confidence 0001 1489999999999999999999999999999999999998765
Q ss_pred ccCCCC-CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEE
Q 009114 453 SQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531 (543)
Q Consensus 453 ~~~~~~-~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~ 531 (543)
+..... ....+++|.|+++++++++| ++++.++.++ .|||+|+|+.++.||+++|+.|++.|+.+|||+|||+|+
T Consensus 371 ~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~ 446 (560)
T PRK08751 371 CINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGE---IGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIAR 446 (560)
T ss_pred ecccccccccCCCcCccCCCceEEEEC-CCCCCCCCCC---ceEEEEecCccchhhcCChhhhhhccccCCCccccceEE
Confidence 543321 24457899999999999999 6777777776 899999999999999999999999998899999999999
Q ss_pred EecCCcEEEecC
Q 009114 532 WIPGGRLKIIDR 543 (543)
Q Consensus 532 ~~~~G~l~i~gR 543 (543)
+|++|+++|+||
T Consensus 447 ~~~~g~l~i~GR 458 (560)
T PRK08751 447 MDEQGFVYIVDR 458 (560)
T ss_pred EcCCceEEEEee
Confidence 999999999998
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=484.48 Aligned_cols=385 Identities=17% Similarity=0.217 Sum_probs=321.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..++.++|++.++++||++|+... +. .+||+||.++++++|+.|.+.|+++|++|+|+++|+++++++++|
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~~------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---RY------QFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---CC------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 368999999999999999999664 33 499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++|||+++++.+++.++++++++++++++......+.. .+.++ ++.++
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~-~~~~~--------------------- 581 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----VPDLT-SLCYN--------------------- 581 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----CCCce-eeecc---------------------
Confidence 99999999999999999999999999999999998765543322 11111 11111
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
+..... ...+.....++++++|+|||||||.||||+++|+++++.+.+....+.+.++|++++..|++|..+....+.
T Consensus 582 ~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 659 (1296)
T PRK10252 582 APLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFW 659 (1296)
T ss_pred cccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHH
Confidence 110000 011122336789999999999999999999999999999988888889999999999999999999888889
Q ss_pred HHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+++.|+++++.+ .++..+.+.++++++|++.++|+++..+.+......
T Consensus 660 ~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~---------------------------- 711 (1296)
T PRK10252 660 PFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG---------------------------- 711 (1296)
T ss_pred HHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc----------------------------
Confidence 999999999875 478899999999999999999999988765311100
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-------CCCCCCcC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-------DNLSGHVG 466 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-------~~~~~~vG 466 (543)
. .....++|.+++||+++++++.+.++..+++++++.||+||++..++..... .....++|
T Consensus 712 -----------~-~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG 779 (1296)
T PRK10252 712 -----------A-RQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIG 779 (1296)
T ss_pred -----------c-cccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcc
Confidence 0 0001489999999999999999999998899999999999998665543221 22346799
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCC------CCeeeccceEEEecCCcEEE
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~------~gw~~TGDig~~~~~G~l~i 540 (543)
.|+++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.|+|
T Consensus 780 ~p~~~~~~~i~d-~~~~~~~~g~---~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~ 855 (1296)
T PRK10252 780 YPVWNTGLRILD-ARMRPVPPGV---AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEY 855 (1296)
T ss_pred cccCCCEEEEEC-CCCCCCCCCC---ceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEE
Confidence 999999999999 6777777776 8999999999999999999999999854 34999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 856 ~GR 858 (1296)
T PRK10252 856 LGR 858 (1296)
T ss_pred ecc
Confidence 998
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=435.21 Aligned_cols=385 Identities=23% Similarity=0.266 Sum_probs=302.4
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEccCChhHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGI-SKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~e~~i~~lA 157 (543)
.|+.++|...+ .|+++|+.+. + ..+||.||.+++.++|.+|.++|+ .+||+|+++++|+++|+++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 57888887754 7999998653 2 258999999999999999999999 7999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++||++|.++.+++.+++++++++++|++.+..+.+.+.. .+.++.+ .++. ..|.
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~i-~~~~----------------~~~~ 132 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVRVL-DVDT----------------PAYA 132 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCceEE-Eccc----------------hhhh
Confidence 9999999999999999999999999999999999887766554431 2333333 3221 1133
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH-
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV- 316 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~- 316 (543)
+++..... ..+.....++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++...+
T Consensus 133 ~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 211 (540)
T PRK13388 133 ELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWA 211 (540)
T ss_pred hhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHH
Confidence 33321111 1122335679999999999999999999999999988877777778899999999999999999887654
Q ss_pred HHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 009114 317 MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (543)
Q Consensus 317 ~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (543)
.++..|+++++.+ .++..+++.++++++|++..+|..+..+..... . .
T Consensus 212 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~----~---------------------------~ 260 (540)
T PRK13388 212 PAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE----R---------------------------P 260 (540)
T ss_pred HHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC----C---------------------------c
Confidence 4788999998876 689999999999999999999999877654100 0 0
Q ss_pred hhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEE
Q 009114 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (543)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evk 475 (543)
.....++|.+ . |++++++..+.+...+++++++.||+||++.++... .....+++|.|++++++
T Consensus 261 -----------~~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~~~~~~vG~p~~g~~i- 324 (540)
T PRK13388 261 -----------DDADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVRE--PGTPPGSIGRGAPGVAI- 324 (540)
T ss_pred -----------cccccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecC--CCCCCCCCCCCCCCcEE-
Confidence 0001356643 3 566788888888888899999999999998665432 23456789999999664
Q ss_pred EeecCCCCCC------CCCC----CCCCceEEEe-CccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 476 LVDVPEMNYT------SEDQ----PCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 476 ivd~~~~~~~------~~~~----p~~~GEi~v~-g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+|.++...+ .+++ +...|||+++ |++++.||+++|+.|++.| .+|||+|||+|++|+||+++|+||
T Consensus 325 -~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR 401 (540)
T PRK13388 325 -YNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGR 401 (540)
T ss_pred -EcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEecc
Confidence 332221111 1111 1137999998 9999999999999999999 689999999999999999999998
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=430.50 Aligned_cols=387 Identities=21% Similarity=0.279 Sum_probs=307.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...++.++|++.+. +|++++.+. + +++||.||.+++.++|++|.++ |++++++|+|+++|+++|++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 45689999988775 788887553 2 4599999999999999999997 8999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|++++|+++.++++++.+++++++++++|+++...+.+.... +.+. ++.++. ..
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~~-~~~~~~----------------~~ 131 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGVR-VINVDS----------------PA 131 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCce-EEEecc----------------cc
Confidence 999999999999999999999999999999999999987766554432 2222 222211 12
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
|.+++..............++++++|+|||||||.||||++||+++...+......+.+.++|++++.+|++|.+++...
T Consensus 132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~ 211 (529)
T PRK07867 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAG 211 (529)
T ss_pred HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHH
Confidence 44444322221222334577999999999999999999999999998888777777788899999999999999998874
Q ss_pred -HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 316 -VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 316 -~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+.++..|+++++.+ .++..+++.++++++|++..+|..+..+..... ..
T Consensus 212 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~----~~------------------------- 262 (529)
T PRK07867 212 WAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPE----RP------------------------- 262 (529)
T ss_pred HHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC----cc-------------------------
Confidence 45788999998876 689999999999999999999999887654100 00
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeE
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~e 473 (543)
.....++|. +.||+++++.+ ..+.+.+|+++++.||+||++..+... .....+++|.|+++
T Consensus 263 -------------~~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~--~~~~~~~~g~~~~~-- 323 (529)
T PRK07867 263 -------------DDADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRT--PDTPPGALGPLPPG-- 323 (529)
T ss_pred -------------cccccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccC--CCCCCCCcCCCCCC--
Confidence 000146785 45888888775 556667799999999999987655432 22345789999999
Q ss_pred EEEeecCCCCCCCCCC------CC---CCceEEE-eCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 474 IKLVDVPEMNYTSEDQ------PC---PRGEICV-RGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 474 vkivd~~~~~~~~~~~------p~---~~GEi~v-~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++|++++..++.+. +. ..|||++ +|++++.||+++++.|.+.| .+|||+|||+|+++++|+++|+||
T Consensus 324 ~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR 402 (529)
T PRK07867 324 VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR 402 (529)
T ss_pred EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEecc
Confidence 7788865555444432 00 1699999 99999999999999999999 689999999999999999999998
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=426.64 Aligned_cols=359 Identities=25% Similarity=0.350 Sum_probs=294.9
Q ss_pred HHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEec
Q 009114 89 VDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168 (543)
Q Consensus 89 ~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl 168 (543)
.++.++++|+... + +.+||+||.++++++|..|. ++|+|+++++|+++|+++++||+++|++++|+
T Consensus 10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l 75 (471)
T PRK07787 10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV 75 (471)
T ss_pred hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence 3456788887553 2 35999999999999999996 57899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCC
Q 009114 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248 (543)
Q Consensus 169 ~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 248 (543)
++.++.+++.+++++++++.++++.+.. ....+.+... ... ..+ .
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~~~--~~~----------------~~~-----------~ 120 (471)
T PRK07787 76 PPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVPVR--LHA----------------RSW-----------H 120 (471)
T ss_pred CCCCChHHHHHHHHhcCCCEEEecCCcc------cccccceeee--ccc----------------ccc-----------c
Confidence 9999999999999999999999976311 0011111100 000 000 0
Q ss_pred CCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEE
Q 009114 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGF 327 (543)
Q Consensus 249 ~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~ 327 (543)
......++|+++|+|||||||.||||+++|+++...+......+.+.++|++++.+|++|.+++.. .+.+++.|+++++
T Consensus 121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~ 200 (471)
T PRK07787 121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVH 200 (471)
T ss_pred cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEe
Confidence 112245789999999999999999999999999998877777778889999999999999999887 5678999999988
Q ss_pred ec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHH
Q 009114 328 YQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406 (543)
Q Consensus 328 ~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~ 406 (543)
.. .++..+++.++ +++|++.++|.++..+.+.... .
T Consensus 201 ~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~------------------------------------------~ 237 (471)
T PRK07787 201 TGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA------------------------------------------A 237 (471)
T ss_pred cCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc------------------------------------------c
Confidence 76 78999999999 9999999999999887652000 0
Q ss_pred HHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCC
Q 009114 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486 (543)
Q Consensus 407 ~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~ 486 (543)
....++|.+++||+++++++.+.++..++.++++.||+||++...+.........+++|.|+++++++|+|. ++..++
T Consensus 238 -~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~-~~~~~~ 315 (471)
T PRK07787 238 -RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDE-DGGPVP 315 (471)
T ss_pred -ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECC-CCCCCC
Confidence 001489999999999999999999999999999999999997655444433455678999999999999994 444443
Q ss_pred C-CCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 487 E-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 487 ~-~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
. ++ ..|||+++|++++.||+++++.|++.|.++|||+|||+|++++||+++++||
T Consensus 316 ~~~~--~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR 371 (471)
T PRK07787 316 HDGE--TVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGR 371 (471)
T ss_pred CCCC--CceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCC
Confidence 2 22 2699999999999999999999999998899999999999999999999998
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=433.92 Aligned_cols=410 Identities=22% Similarity=0.332 Sum_probs=316.2
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+++.++|++.+..+|+++++.+. + +.+||+||++++.++|.+|.+.|+++||+|+++++|+++|+++++
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 3478999999999999999999664 2 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCC--C--CCC--CCCcC--
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGID--D--QIP--SLPIT-- 228 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~--~--~~~--~~~~~-- 228 (543)
||+++|++++|++|.++.+++.++++.++++.+++++.....+...... .....+++..... . ... .....
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPFPKNLLYPFVQKKQ 171 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh-hccceeEEeccccccccccccccchhhccc
Confidence 9999999999999999999999999999999999988665544333211 1122222221000 0 000 00000
Q ss_pred --------CCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc-CcccC-CCc
Q 009114 229 --------TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFY-PSD 298 (543)
Q Consensus 229 --------~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-~~~~~-~~d 298 (543)
.......|.++.... ..........++++++++|||||||.||||.+||+++......... ..... .++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~ 250 (563)
T PRK06710 172 SNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEE 250 (563)
T ss_pred ccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCc
Confidence 000011223322111 1111111233578999999999999999999999998765432222 22333 456
Q ss_pred EEEEeCChHHHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHH
Q 009114 299 VYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLF 376 (543)
Q Consensus 299 ~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 376 (543)
++++++|++|.+++.. .+.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+......
T Consensus 251 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------- 317 (563)
T PRK06710 251 VVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLL------------- 317 (563)
T ss_pred eEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcc-------------
Confidence 8899999999999876 446788999998876 6899999999999999999999999887542000
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCC
Q 009114 377 NAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLD 456 (543)
Q Consensus 377 ~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~ 456 (543)
+....+++|.+++||+++++++.+++++.+++++++.||+||++.......
T Consensus 318 -----------------------------~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 368 (563)
T PRK06710 318 -----------------------------KEYDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNF 368 (563)
T ss_pred -----------------------------ccCChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCc
Confidence 000014799999999999999999999999999999999999987654332
Q ss_pred C-CCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecC
Q 009114 457 E-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (543)
Q Consensus 457 ~-~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~ 535 (543)
. .....+++|.|.++++++++|++++..++.++ .|||+++|+.++.||+++++.|++.| .+|||+|||+|+++++
T Consensus 369 ~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~ 444 (563)
T PRK06710 369 LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGE---IGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDED 444 (563)
T ss_pred ccccccCCccCCCCCCCeEEEEECCCCccCCCCC---ceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCC
Confidence 2 22345789999999999999977777777776 89999999999999999999999988 6899999999999999
Q ss_pred CcEEEecC
Q 009114 536 GRLKIIDR 543 (543)
Q Consensus 536 G~l~i~gR 543 (543)
|.++++||
T Consensus 445 g~~~~~GR 452 (563)
T PRK06710 445 GFFYVKDR 452 (563)
T ss_pred CcEEEeec
Confidence 99999998
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=429.33 Aligned_cols=381 Identities=19% Similarity=0.213 Sum_probs=304.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...++++.|.+.+..+||++|+... +. .+||+|+.++++++|++|.+.|+++||+|+|+++|+++|+++++
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~~------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---DG------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---CC------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999998653 22 49999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+.+|+++||+++.++.+++.+++++++++.+++++...+.+..... .++.++...
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~----------------- 160 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPAT----------------- 160 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccch-----------------
Confidence 999999999999999999999999999999999998876655543221 122222110
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHH--HHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~--~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
..... ....+..+++.++|+|||||||.||||+++|.... ...........+.++|++++.+|++|.+++..
T Consensus 161 ~~~~~------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~ 234 (516)
T PRK13383 161 AGAEE------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGM 234 (516)
T ss_pred hhhhc------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHH
Confidence 00000 00111234567789999999999999999998432 11122223356788999999999999999988
Q ss_pred HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
.+.++..|+++++.. .++..+++.++++++|.+.++|.++..+.+..... ..
T Consensus 235 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------~~---- 287 (516)
T PRK13383 235 LMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRV-----------------------RA---- 287 (516)
T ss_pred HHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccc-----------------------cc----
Confidence 888899999998766 78999999999999999999999998876521100 00
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-CCCCCCcCCCCCCe
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAAC 472 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ 472 (543)
....+++|.+++||+++++++.+.+.+.|++.+++.||+||++..+...... ....+++|.|++++
T Consensus 288 -------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~ 354 (516)
T PRK13383 288 -------------RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGC 354 (516)
T ss_pred -------------cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCc
Confidence 0001589999999999999999999999999999999999997655433221 23467899999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 473 EIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 473 evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++|+| ++++..+.++ .|||+++|+.++.||++++. +.+ .+|||+|||+|++|++|+++|+||
T Consensus 355 ~~~i~d-~~~~~~~~g~---~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~TGDl~~~d~~G~l~i~GR 417 (516)
T PRK13383 355 PVRILD-RNNRPVGPRV---TGRIFVGGELAGTRYTDGGG---KAV-VDGMTSTGDMGYLDNAGRLFIVGR 417 (516)
T ss_pred EEEEEC-CCCCCCCCCC---ceEEEEecCcccccccCCch---hhe-ecCceecceeEEEcCCccEEEecc
Confidence 999999 5556555554 89999999999999998764 223 589999999999999999999998
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=436.46 Aligned_cols=396 Identities=20% Similarity=0.262 Sum_probs=298.3
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 009114 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (543)
Q Consensus 80 tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~ 159 (543)
++.++|++.+..+||++|+.+........+.++.+||+||++++.++|++|.++| .+||+|+|+++|+++|+++++||+
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 6789999999999999999765100011223567999999999999999999999 689999999999999999999999
Q ss_pred hcCCeEEecCC---CCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCC--CeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 160 AYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVP--TVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 160 ~~G~~~vpl~~---~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~--~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++|+++||+++ .++.+++.++|+++++++|+++.+..+.+........ ....++.++...
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 145 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLD--------------- 145 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccc---------------
Confidence 99999999997 4578999999999999999999877666544321111 111222221110
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC-cc-----cCCCcEEEEeCChHH
Q 009114 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TK-----FYPSDVYISYLPLAH 308 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~-~~-----~~~~d~~l~~lpl~h 308 (543)
+ ............++|+++|+|||||||.||||+++|+++++.+...... +. ...+|++++++|++|
T Consensus 146 ----~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h 218 (578)
T PRK05850 146 ----L---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYH 218 (578)
T ss_pred ----c---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCC
Confidence 0 0000011223457899999999999999999999999998876554322 11 356889999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec-----CChHhHHHHHHhhCCeEEEechHHHHHHHHH-HHHHHhccCchHHHHHHHHHH
Q 009114 309 IYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAG-ITSAVRTSGGLRERLFNAAYN 381 (543)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~-~~~~~~~~~~~~~~~~~~a~~ 381 (543)
.++++. .+.+++.|+++++.+ .++..+++.+.+++++++ .+|..+..+... ....
T Consensus 219 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~----------------- 280 (578)
T PRK05850 219 DMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDD----------------- 280 (578)
T ss_pred CchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchh-----------------
Confidence 999876 677899999999876 278899999999999855 667654433221 0000
Q ss_pred HHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC------CccccccChhhhccccccC
Q 009114 382 AKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQL 455 (543)
Q Consensus 382 ~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~ 455 (543)
+......+++|.+++||+++++++.+.+...|+ ..+++.||+||++..+...
T Consensus 281 ----------------------~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 338 (578)
T PRK05850 281 ----------------------DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATR 338 (578)
T ss_pred ----------------------hhcCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheecc
Confidence 000001147999999999999999999988773 3689999999987554432
Q ss_pred CCCCC-------------------------CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCC
Q 009114 456 DEGDN-------------------------LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510 (543)
Q Consensus 456 ~~~~~-------------------------~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~ 510 (543)
..... ...++|.|. +.+++|+|.++++.++.++ .|||+|+|++++.|||++
T Consensus 339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~---~Gel~v~g~~~~~gY~~~ 414 (578)
T PRK05850 339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGT---VGEIWVHGDNVAAGYWQK 414 (578)
T ss_pred CCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCC---EEEEEEecCcccccccCC
Confidence 21110 011345553 5899999977677777776 899999999999999999
Q ss_pred hhhhhhhcC-----------CCCeeeccceEEEecCCcEEEecC
Q 009114 511 EIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 511 ~~~t~~~~~-----------~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+.|++.|+ .+|||+|||+|+++ ||+|+|+||
T Consensus 415 ~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR 457 (578)
T PRK05850 415 PEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGR 457 (578)
T ss_pred hhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcc
Confidence 999999984 25799999999998 999999998
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=516.66 Aligned_cols=389 Identities=19% Similarity=0.218 Sum_probs=326.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...+++++|++.++++||++|+... ++. +||+||.++++++|+.|.++|+++|++|+|++++++++++++
T Consensus 3717 ~~~~~~~~~~~~~~~~~p~~~Av~~~---~~~------~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~ 3787 (4334)
T PRK05691 3717 PLEQSYVRLFEAQVAAHPQRIAASCL---DQQ------WSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMI 3787 (4334)
T ss_pred ccccCHHHHHHHHHHhCCCceEEEcC---CCc------ccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999876 554 999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCC--eeEEEEeCCCCCCCCCCCcCCCcee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT--VRLIVVIGGIDDQIPSLPITTGVQI 233 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~--l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (543)
+||+++|+++|||++.++.+.+.+|++++++++++++.............+.. ...+++.++
T Consensus 3788 lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 3851 (4334)
T PRK05691 3788 VGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE---------------- 3851 (4334)
T ss_pred HHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc----------------
Confidence 99999999999999999999999999999999999998765443333222211 111222111
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 009114 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
..........+.....|++++||+|||||||.||||+++|+++++.+.+....+.++++|+++.+.++.|..+..
T Consensus 3852 -----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~ 3926 (4334)
T PRK05691 3852 -----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVW 3926 (4334)
T ss_pred -----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHH
Confidence 111111111223346789999999999999999999999999999998888888999999999999999999999
Q ss_pred HHHHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 314 ~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
..+.++..|+++++++ .++..+.+.++++++|++..+|+++..+.+....
T Consensus 3927 ~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~-------------------------- 3980 (4334)
T PRK05691 3927 QFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ-------------------------- 3980 (4334)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc--------------------------
Confidence 8999999999999876 4788999999999999999999999887542100
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC----CCCCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGH 464 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~----~~~~~~ 464 (543)
...++|.+++||+++++++.+.|.+.+ ++++++.||+||++..++..... .....+
T Consensus 3981 -------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~ 4041 (4334)
T PRK05691 3981 -------------------ALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLP 4041 (4334)
T ss_pred -------------------cCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCC
Confidence 014899999999999999999998765 78999999999998766533221 123357
Q ss_pred cCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC-------CCCeeeccceEEEecCCc
Q 009114 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-------EDGWFHTGDIGMWIPGGR 537 (543)
Q Consensus 465 vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~-------~~gw~~TGDig~~~~~G~ 537 (543)
+|+|+++++++|+| +.++.++.|. .|||||+|++|++||+++|++|+++|. .++||+|||+|++++||.
T Consensus 4042 iG~p~~~~~~~v~d-~~~~~~p~g~---~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~ 4117 (4334)
T PRK05691 4042 IGSPTDNNRLYLLD-EALELVPLGA---VGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGV 4117 (4334)
T ss_pred CCCccCCCEEEEEC-CCCCCCCCCC---ceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCc
Confidence 99999999999999 6777788887 899999999999999999999999993 357999999999999999
Q ss_pred EEEecC
Q 009114 538 LKIIDR 543 (543)
Q Consensus 538 l~i~gR 543 (543)
|+|+||
T Consensus 4118 l~~~GR 4123 (4334)
T PRK05691 4118 LEYVGR 4123 (4334)
T ss_pred EEEecc
Confidence 999998
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=436.27 Aligned_cols=395 Identities=23% Similarity=0.352 Sum_probs=309.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.+++.|+.++|+..++++|+..++ +.+...++.+||.||++++.++|++|.++|+++||+|+++++|+++|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~ 90 (579)
T PRK09192 17 YADFPTLVEALDYAALGEAGMNFY------DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEA 90 (579)
T ss_pred ccchhhHHHHHHHhhccCCceEEE------ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHH
Confidence 457789999999999999877655 22223357799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCC-------HHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCc
Q 009114 155 DHACSAYSFISVPLYDTLG-------PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~-------~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (543)
++||+++|++++|+++.+. .+++.++++.++++++|++....+.+.+.....+ .+
T Consensus 91 ~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---~~--------------- 152 (579)
T PRK09192 91 FFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---LL--------------- 152 (579)
T ss_pred HHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---cc---------------
Confidence 9999999999999987543 6899999999999999999876666554332111 11
Q ss_pred CCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc-CcccCCCcEEEEeCCh
Q 009114 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL-GTKFYPSDVYISYLPL 306 (543)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~-~~~~~~~d~~l~~lpl 306 (543)
.+.++.++...... ........++++++|+|||||||.||||+++|++++..+..... .+.+.++|++++++|+
T Consensus 153 ----~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (579)
T PRK09192 153 ----HVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPF 227 (579)
T ss_pred ----ceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCC
Confidence 11233333322211 12223356789999999999999999999999999988877766 6788999999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEec-----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHH
Q 009114 307 AHIYERANQ-VMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (543)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~i~~~~-----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (543)
+|.+++... +.++..|+++.+.. .++..+++.+.++++|+++..|..+..+.......
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~---------------- 291 (579)
T PRK09192 228 YHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK---------------- 291 (579)
T ss_pred CCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc----------------
Confidence 999998864 45688899887765 26888999999999998777555444432211000
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC------CccccccChhhhcccccc
Q 009114 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 381 ~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~ 454 (543)
..+....+++|.+++||+++++++.+.+.+.+. ..+++.||+||+++.++.
T Consensus 292 -----------------------~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~ 348 (579)
T PRK09192 292 -----------------------DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSF 348 (579)
T ss_pred -----------------------cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEec
Confidence 000001148999999999999999999988773 248999999999766554
Q ss_pred CCCCC----------------------------CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhh
Q 009114 455 LDEGD----------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (543)
Q Consensus 455 ~~~~~----------------------------~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~g 506 (543)
..... ...+++|.|+|+++++|+| ++++.++.++ .|||+++|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g~---~Gel~i~g~~~~~g 424 (579)
T PRK09192 349 SPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERV---VGHICVRGPSLMSG 424 (579)
T ss_pred cCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCCC---EEEEEecCCchhhh
Confidence 32211 0125799999999999999 5566666665 89999999999999
Q ss_pred hcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
||++ +.+.+.+..+|||+|||+|++ ++|+++|+||
T Consensus 425 Y~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR 459 (579)
T PRK09192 425 YFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGR 459 (579)
T ss_pred hcCC-ccccccccCCceeeccceeeE-ECCEEEEEec
Confidence 9999 678888888999999999999 9999999998
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=518.05 Aligned_cols=387 Identities=19% Similarity=0.263 Sum_probs=324.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...+++++|++.++++||++|+... +. .+||+||.++++++|++|.+.|+++|++|+|+++|+++|++++
T Consensus 4548 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~~------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 4618 (5163)
T PRK12316 4548 PATRCVHQLVAERARMTPDAVAVVFD---EE------KLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGL 4618 (5163)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEeC---Cc------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999764 33 4999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++|||+|.++.+.+.++++++++++||++....+.+. ....+. ++.++...
T Consensus 4619 lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~-~~~~~~~~---------------- 4677 (5163)
T PRK12316 4619 LAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLP----IPDGLA-SLALDRDE---------------- 4677 (5163)
T ss_pred HHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----cccCcc-eEeecchh----------------
Confidence 999999999999999999999999999999999999876544321 111111 12221110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
++ .......+.....++++++|+|||||||.||||+++|+++++.+.+....+.++++|++++++|++|..+....
T Consensus 4678 --~~--~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 4753 (5163)
T PRK12316 4678 --DW--EGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGL 4753 (5163)
T ss_pred --hc--ccCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhcCCCcCCeEEEecCcchhhHHHHH
Confidence 00 00111122334678999999999999999999999999999999888888889999999999999999998888
Q ss_pred HHHHHhCcEEEEecC---ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 316 VMTVYSGVAVGFYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 316 ~~~l~~G~~i~~~~~---~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
+.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 4754 ~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---------------------------- 4805 (5163)
T PRK12316 4754 YHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERD---------------------------- 4805 (5163)
T ss_pred HHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhccc----------------------------
Confidence 899999999999873 7899999999999999999999999886531110
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCC-----CCCCCcC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVG 466 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~-----~~~~~vG 466 (543)
...+++|.+++||+++++++.+.+...+ +++++++||+||+++.++.....+ ....++|
T Consensus 4806 ---------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG 4870 (5163)
T PRK12316 4806 ---------------GEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIG 4870 (5163)
T ss_pred ---------------cCCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCccc
Confidence 0115899999999999999998777665 689999999999987665433222 3457899
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCC-------CCeeeccceEEEecCCcEE
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~-------~gw~~TGDig~~~~~G~l~ 539 (543)
+|+++++++|+| ++++.++.|. .|||+|+|++|++|||++|+.|++.|.. ++||+|||+|++++||.++
T Consensus 4871 ~p~~~~~~~i~d-~~~~~~p~g~---~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~ 4946 (5163)
T PRK12316 4871 TPLGNRSGYVLD-GQLNPLPVGV---AGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVID 4946 (5163)
T ss_pred ccccCCEEEEEC-CCCCcCCCCC---CceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCcEE
Confidence 999999999999 6677777776 8999999999999999999999999943 3699999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 4947 ~~GR 4950 (5163)
T PRK12316 4947 YLGR 4950 (5163)
T ss_pred Eecc
Confidence 9998
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=466.01 Aligned_cols=397 Identities=25% Similarity=0.282 Sum_probs=311.7
Q ss_pred CCCCHHHHHHHHHHhcC-CCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFR-DYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~p-d~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...++.+.|.+.++++| ++.++.+. ++ +.+||+|++++++++|+.|.+ |+++||+|+++++|++||++++
T Consensus 629 ~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~ 699 (1140)
T PRK06814 629 YDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTF 699 (1140)
T ss_pred ccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHH
Confidence 45788999999999987 45655331 12 359999999999999999975 9999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHH--HhhccCCCCeeEEEEeCCCCCCCCCCCcCCCcee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l--~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (543)
+||+++|++++|++++++++++.+++++++++++|++++..+.. .....+.+....++.+++...... ..
T Consensus 700 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~ 771 (1140)
T PRK06814 700 FALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIG--------LA 771 (1140)
T ss_pred HHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCC--------hH
Confidence 99999999999999999999999999999999999987644321 111112222334555443211000 00
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 009114 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
..+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+........++++|++++.+|++|.+++.
T Consensus 772 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 850 (1140)
T PRK06814 772 DKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLT 850 (1140)
T ss_pred HHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHH
Confidence 011111111111 1111235789999999999999999999999999998888777778889999999999999999995
Q ss_pred H-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 314 N-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 314 ~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
. .+.++..|+++++.+ .+...+.+.++++++|+++++|++++.+.+.. .
T Consensus 851 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~-----~----------------------- 902 (1140)
T PRK06814 851 GGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA-----H----------------------- 902 (1140)
T ss_pred HHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc-----c-----------------------
Confidence 5 567899999999876 36677889999999999999999998775420 0
Q ss_pred CCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (543)
....+++|.+++||+++++++.+.+++.+++++++.||+||++..+....+.+...+++|+|+|
T Consensus 903 ----------------~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 966 (1140)
T PRK06814 903 ----------------PYDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLP 966 (1140)
T ss_pred ----------------cccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCC
Confidence 0001589999999999999999999999999999999999998776655555566789999999
Q ss_pred CeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 471 ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 471 ~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++++++++++ .+ +.|||+++|++++.|||++++.+......+|||+|||+|++|+||++++.||
T Consensus 967 g~~~~~~~~~~-----~~---~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR 1031 (1140)
T PRK06814 967 GIEYRLEPVPG-----ID---EGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGR 1031 (1140)
T ss_pred CCeEEEeecCC-----CC---CceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEec
Confidence 99999988542 12 3799999999999999998754322223689999999999999999999998
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=516.33 Aligned_cols=387 Identities=18% Similarity=0.216 Sum_probs=321.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...+++++|++.++++||++|+... ++ .+||+||.++++++|++|.+.|+++|++|+|+++|++++++++
T Consensus 2000 ~~~~~~~~~~~~~a~~~p~~~A~~~~---~~------~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~ 2070 (5163)
T PRK12316 2000 PRGPGVHQRIAEQAARAPEAIAVVFG---DQ------HLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVAL 2070 (5163)
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---CC------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34568999999999999999999764 43 3999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++|||+|.++.+++.++++++++++++++.+....+.. ...+. .+.++..
T Consensus 2071 lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~-~~~~~~~----------------- 2128 (5163)
T PRK12316 2071 LAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL----PAGVA-RLPLDRD----------------- 2128 (5163)
T ss_pred HHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc----ccccc-eEeccch-----------------
Confidence 9999999999999999999999999999999999998765443211 11111 1111110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
.++... ....+.....++|+++|+|||||||.||||+++|+++.+.+......+.++++|+++.++|++|..+....
T Consensus 2129 -~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 2205 (5163)
T PRK12316 2129 -AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMSFSFDGAHEQW 2205 (5163)
T ss_pred -hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhcCCCCcceEEEecCchHHHHHHHH
Confidence 001111 11122334678999999999999999999999999999999888888889999999999999999888888
Q ss_pred HHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
+.+++.|+++++.+ .++..+++.++++++|++..+|+++..+.+.....
T Consensus 2206 ~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------------------------- 2257 (5163)
T PRK12316 2206 FHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD---------------------------- 2257 (5163)
T ss_pred HHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc----------------------------
Confidence 89999999997765 47889999999999999999999999886531100
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC--CC---CCCCcC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG--DN---LSGHVG 466 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~--~~---~~~~vG 466 (543)
....++|.+++||+++++++.+.+.+.+ ++.++++||+||++..++..... +. ...++|
T Consensus 2258 ---------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG 2322 (5163)
T PRK12316 2258 ---------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIG 2322 (5163)
T ss_pred ---------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCCCcCCcc
Confidence 0013799999999999999999998876 57899999999998665543221 11 225799
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC-------CCCeeeccceEEEecCCcEE
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-------EDGWFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~-------~~gw~~TGDig~~~~~G~l~ 539 (543)
+|+++++++|+| ++++.++.|. .|||||+|++|++||+++|++|+++|. .++||+|||+|++++||.|+
T Consensus 2323 ~p~~~~~~~i~d-~~~~~vp~g~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~dG~l~ 2398 (5163)
T PRK12316 2323 RALGNRRAYILD-ADLNLLAPGM---AGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVVE 2398 (5163)
T ss_pred cccCCCEEEEEC-CCCCCCCCCC---eeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcCCCcEE
Confidence 999999999999 6677777776 899999999999999999999999994 24699999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 2399 ~~GR 2402 (5163)
T PRK12316 2399 YLGR 2402 (5163)
T ss_pred EecC
Confidence 9998
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-50 Score=507.97 Aligned_cols=386 Identities=22% Similarity=0.272 Sum_probs=322.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...+++++|++.++++||++|+... + +.+||+||.++++++|+.|.+.|+++|++|+|+++|+++|+++++
T Consensus 510 ~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l 580 (3956)
T PRK12467 510 APDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL 580 (3956)
T ss_pred CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3468999999999999999999764 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|+++|||++.++.+.+.++++++++++++++.+....+. ....+. ++.++...
T Consensus 581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~-~~~~~~~~----------------- 638 (3956)
T PRK12467 581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLP----VPAGLR-SLCLDEPA----------------- 638 (3956)
T ss_pred HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhcc----cccCcc-EEEecccc-----------------
Confidence 99999999999999999999999999999999999875433221 111122 22222211
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~ 316 (543)
+... ......+.....++++++|+|||||||.||||+++|+++.+.+......+.+.++|+++.+.|++|..+....+
T Consensus 639 -~~~~-~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~ 716 (3956)
T PRK12467 639 -DLLC-GYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELF 716 (3956)
T ss_pred -cccc-ccCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHH
Confidence 0000 00111223345789999999999999999999999999999998887778899999999999999999998899
Q ss_pred HHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 317 ~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
.+++.|+++++.+ .++..+++.|+++++|++.++|+++..+.+....
T Consensus 717 ~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------------------- 767 (3956)
T PRK12467 717 GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV----------------------------- 767 (3956)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcc-----------------------------
Confidence 9999999999987 4789999999999999999999999988652110
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCC----CCCCCcCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD----NLSGHVGS 467 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~----~~~~~vG~ 467 (543)
....++|.+++||+++++++.+.+++.+ ++++++.||+||++..++...... ....++|+
T Consensus 768 ---------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 832 (3956)
T PRK12467 768 ---------------ALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQ 832 (3956)
T ss_pred ---------------ccCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEecccccccCCCCcccC
Confidence 0013679999999999999999999876 689999999999987665443222 12357999
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCC-------CCeeeccceEEEecCCcEEE
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE-------DGWFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~-------~gw~~TGDig~~~~~G~l~i 540 (543)
|+++++++|+| ++++.++.|. .|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.|+|
T Consensus 833 p~~~~~~~i~d-~~~~~vp~G~---~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~ 908 (3956)
T PRK12467 833 PLANLGLYILD-HYLNPVPVGV---VGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRADGVIEY 908 (3956)
T ss_pred CcCCCEEEEEC-CCCCCCCCCC---ceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcCCCcEEE
Confidence 99999999999 6677777776 8999999999999999999999999832 35999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 909 ~GR 911 (3956)
T PRK12467 909 LGR 911 (3956)
T ss_pred ecc
Confidence 998
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=425.98 Aligned_cols=407 Identities=22% Similarity=0.316 Sum_probs=311.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.++.+.|++.++.+|+++|+... + ..+||+||.+++.++|.+|.+.|+++||+|+|+++|+++|+++++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 68899999999999999998653 2 34999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++.+++.+++++++++.++++.+..+.+.+.....+..+.+ .++...... .....+...++++
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~ 164 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPL-VIDVDDPEY---PGGRFIGALDYEA 164 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceE-EEecCcccc---ccCCCcccccHHH
Confidence 999999999999999999999999999999999998877766554333332222 222211110 0111223456666
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~ 318 (543)
+............+.+.+++++|+|||||||.||||+++|+++...+........+..+|+.++.+|++|.+++...+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~ 244 (545)
T PRK08162 165 FLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTV 244 (545)
T ss_pred HhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHH
Confidence 65432221111122345689999999999999999999999987666555445667888999999999999998775544
Q ss_pred -HHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 009114 319 -VYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (543)
Q Consensus 319 -l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (543)
+..|..+.....++..+++.++++++|++.++|.++..+.+.....
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------------- 291 (545)
T PRK08162 245 AARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW--------------------------------- 291 (545)
T ss_pred HHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------------
Confidence 4444444444479999999999999999999999999886521000
Q ss_pred hHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-----------CCCCCCcC
Q 009114 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-----------DNLSGHVG 466 (543)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG 466 (543)
+..+ .+.+.+++||+++++++.++++. +++++++.||+||+++.+...... ....+++|
T Consensus 292 --------~~~~-~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (545)
T PRK08162 292 --------RAGI-DHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG 361 (545)
T ss_pred --------ccCC-ccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccchhhccCCCC
Confidence 0001 24455678999999999999887 489999999999986544432111 01234567
Q ss_pred CCCC-CeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 467 SPNA-ACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 467 ~p~~-~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.+.+ +.+++|+|.+++..++.+.. ..|||+|+|+.++.|||++++.|++.| .+|||+|||+|++|+||+++|+||
T Consensus 362 ~~~~~~~~~~i~d~~~~~~~~~~g~-~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR 437 (545)
T PRK08162 362 VRYPLQEGVTVLDPDTMQPVPADGE-TIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDR 437 (545)
T ss_pred cccCCcceEEEEcCCCCcccCCCCC-ceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEec
Confidence 6665 34688888666665544210 269999999999999999999999999 689999999999999999999998
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-50 Score=427.29 Aligned_cols=381 Identities=18% Similarity=0.223 Sum_probs=309.8
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 009114 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (543)
Q Consensus 80 tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~ 159 (543)
++.+.|.+.+..+|+++|+... + +.+||+||.+++.++|..|.+.|+++|++|+|+++|+.+|+++++||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5788999999999999998664 3 249999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHH
Q 009114 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNL 239 (543)
Q Consensus 160 ~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (543)
++|++++|+++.++.+++.++++.++++.++++.+....+.. .. ++.++. ..++
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~-------~~-~~~~~~------------------~~~~ 125 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG-------TQ-IITLSA------------------LEQA 125 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC-------Cc-eEEchH------------------hhhh
Confidence 999999999999999999999999999999998764322111 11 111111 1111
Q ss_pred HhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHH
Q 009114 240 LSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTV 319 (543)
Q Consensus 240 ~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l 319 (543)
...... ........++++++|+|||||||.||+|+++|+++...+......+.+..+|++++.+|++|.+++...+.++
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l 204 (502)
T TIGR01734 126 ETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCL 204 (502)
T ss_pred hhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHH
Confidence 111111 1111234678999999999999999999999999998888777667888999999999999999988888899
Q ss_pred HhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCc
Q 009114 320 YSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (543)
Q Consensus 320 ~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~ 395 (543)
..|+++++++ .++..+++.+.++++|.+.++|.++..+.....
T Consensus 205 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~--------------------------------- 251 (502)
T TIGR01734 205 ASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPN--------------------------------- 251 (502)
T ss_pred HCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccc---------------------------------
Confidence 9999999876 478899999999999999999999876543100
Q ss_pred hhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCC-----CCCCCCCcCCCC
Q 009114 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-----GDNLSGHVGSPN 469 (543)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~p~ 469 (543)
.+....+++|.+++||+++++++.+.+++.+ +++++++||+||+++..+.... ......++|.|.
T Consensus 252 ---------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~ 322 (502)
T TIGR01734 252 ---------FNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAK 322 (502)
T ss_pred ---------cccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCcccccccc
Confidence 0000115899999999999999999999887 7899999999998754432211 123346799999
Q ss_pred CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc---CCCCeeeccceEEEecCCcEEEecC
Q 009114 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 470 ~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++++|+| +++...+.++ .|||+++|+.++.||+++++.|.+.| +.++||+|||+|++|++ +++|+||
T Consensus 323 ~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR 394 (502)
T TIGR01734 323 PDMNLFIMD-EEGEPLPEGE---KGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGR 394 (502)
T ss_pred CCCEEEEEC-CCCCCCCCCC---eeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEecc
Confidence 999999999 4555566665 89999999999999999999999886 33469999999999976 9999998
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-49 Score=425.13 Aligned_cols=409 Identities=25% Similarity=0.348 Sum_probs=318.7
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..++.++|++.++++|+++|+... + +.+||.||.++++++|..|.+ .|+++|++|+++++|+++|+++++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999999653 2 359999999999999999985 899999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCC--CCC----------
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQ--IPS---------- 224 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~--~~~---------- 224 (543)
||++.|++++|+++.++.+.+.+++++++++.++++.+..+.+.+..... ..+.++........ ...
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLSTAKGTLVNFVVKYI 171 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEecccccccccccccccchhhhc
Confidence 99999999999999999999999999999999999877655554433222 23333332111000 000
Q ss_pred --C-CcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCc---ccCCCc
Q 009114 225 --L-PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT---KFYPSD 298 (543)
Q Consensus 225 --~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~---~~~~~d 298 (543)
. .+.......++.+....+...........++++++|+|||||||.||||.++|+++...+......+ ....++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~ 251 (560)
T PRK08974 172 KRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKE 251 (560)
T ss_pred ccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCcc
Confidence 0 0000011223344433332222222335678999999999999999999999999987665432221 234467
Q ss_pred EEEEeCChHHHHHHHH-HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHH
Q 009114 299 VYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375 (543)
Q Consensus 299 ~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 375 (543)
++++.+|++|++++.. .+.++..|+++.+.. .++..+++.++++++|.+.++|.++..+.....
T Consensus 252 ~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------------- 318 (560)
T PRK08974 252 LVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEE------------- 318 (560)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC-------------
Confidence 8899999999999876 456778888877654 578889999999999999999999998865210
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccC
Q 009114 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL 455 (543)
Q Consensus 376 ~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~ 455 (543)
......+++|.+++||+++++++.+.+++.+|+++++.||+||++..++..
T Consensus 319 -----------------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~ 369 (560)
T PRK08974 319 -----------------------------FQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVN 369 (560)
T ss_pred -----------------------------cccCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeecc
Confidence 000011489999999999999999999999999999999999988765544
Q ss_pred CCC-CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEec
Q 009114 456 DEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534 (543)
Q Consensus 456 ~~~-~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~ 534 (543)
... ....+++|.|+++++++|+| +++...+.++ .|||+++|+.++.||+++++.+++.| .+|||+|||+|++++
T Consensus 370 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~---~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~ 444 (560)
T PRK08974 370 PYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGE---PGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE 444 (560)
T ss_pred CCCCcccCCccccCcCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC
Confidence 332 23457899999999999999 5666667666 89999999999999999999999999 789999999999999
Q ss_pred CCcEEEecC
Q 009114 535 GGRLKIIDR 543 (543)
Q Consensus 535 ~G~l~i~gR 543 (543)
+|+++|+||
T Consensus 445 ~g~l~i~GR 453 (560)
T PRK08974 445 EGFLRIVDR 453 (560)
T ss_pred CceEEEEec
Confidence 999999998
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-49 Score=431.77 Aligned_cols=397 Identities=23% Similarity=0.271 Sum_probs=309.7
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|.+.++++||++|+... + +.+||+||.++++++|.+|.+.|+++|++|+|+++|+++|+++++
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~l 105 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWL 105 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999764 3 349999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|++++|+++.++.+++.+++++++++++|++.+..+.+.+........+.++..++.... ....|
T Consensus 106 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 175 (600)
T PRK08279 106 GLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD----------DPEGY 175 (600)
T ss_pred HHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc----------ccccH
Confidence 99999999999999999999999999999999999988777766554443333333333321100 02234
Q ss_pred HHHHhcCccC----CCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 009114 237 SNLLSQGRSN----LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 237 ~~l~~~~~~~----~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~ 312 (543)
.++....... ........++++++|+|||||||.||||++||+++...+......+.+.++|++++++|++|.+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~ 255 (600)
T PRK08279 176 EDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGG 255 (600)
T ss_pred HHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhH
Confidence 4544322211 111233467899999999999999999999999999998887777889999999999999999999
Q ss_pred HHHH-HHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 313 ANQV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 313 ~~~~-~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
...+ .++..|+++++.+ +++..+++.++++++|++..+|.++..+.......
T Consensus 256 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~-------------------------- 309 (600)
T PRK08279 256 TVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP-------------------------- 309 (600)
T ss_pred HHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc--------------------------
Confidence 8755 4677888888876 68999999999999999999999998765420000
Q ss_pred CCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCC-ccccccChhhhccccccCCCCCCCCCCcCCCC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (543)
.....++|.+ +|+++++++.+.+...|+. .+++.||+||++..++.. ....+++|.+.
T Consensus 310 ----------------~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~---~~~~~~~g~~~ 368 (600)
T PRK08279 310 ----------------TDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV---FNFDGTVGRVP 368 (600)
T ss_pred ----------------cccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc---CCCCccccccc
Confidence 0001367764 3677999999999999876 499999999987543321 23456788766
Q ss_pred C----CeEEEEeecCCC----------CCCCCCCCCCCceEE--EeCccchhhhcCChhhhhhhc------CCCCeeecc
Q 009114 470 A----ACEIKLVDVPEM----------NYTSEDQPCPRGEIC--VRGPLIFKGYYKDEIQTKEVI------DEDGWFHTG 527 (543)
Q Consensus 470 ~----~~evkivd~~~~----------~~~~~~~p~~~GEi~--v~g~~v~~gY~~~~~~t~~~~------~~~gw~~TG 527 (543)
+ +..+..++++.+ ..++.+ ..|||+ ++|++++.|| ++++.|++.| +.++||+||
T Consensus 369 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g---~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TG 444 (600)
T PRK08279 369 LWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPG---EVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTG 444 (600)
T ss_pred ccccccceeeeeccCcCceeeCCCCccccCCCC---CceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeec
Confidence 6 333332222111 122333 389998 7899999999 9999998876 246899999
Q ss_pred ceEEEecCCcEEEecC
Q 009114 528 DIGMWIPGGRLKIIDR 543 (543)
Q Consensus 528 Dig~~~~~G~l~i~gR 543 (543)
|+|++|+||+|++.||
T Consensus 445 Dlg~~~~dG~l~~~GR 460 (600)
T PRK08279 445 DLMRDDGFGHAQFVDR 460 (600)
T ss_pred ceEEEcCCccEEEecc
Confidence 9999999999999998
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-49 Score=421.05 Aligned_cols=386 Identities=20% Similarity=0.182 Sum_probs=298.7
Q ss_pred HHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEE
Q 009114 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISV 166 (543)
Q Consensus 87 ~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~v 166 (543)
..++++|+++|+... +.. +.+||+||.++++++|++|.++|+++||+|+|+++|+++|+++++||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 346779999998653 221 4599999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccC
Q 009114 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246 (543)
Q Consensus 167 pl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 246 (543)
|+++.++++++.+++++++++.++++............. ....+.+.... .....+++......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~~-- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGAD---LPLRLSFGGEI-----------DGFGSFEAALAGAG-- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhc---cceEEEecCcc-----------cccccHHHHhcccC--
Confidence 999999999999999999999999987543322222111 11222222110 01223444332110
Q ss_pred CCCCCCCCCCCeEEEEecCCCCCCccEEEe--cHHHHHHHHH----hhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHH
Q 009114 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVL--SHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERANQVMTVY 320 (543)
Q Consensus 247 ~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~--th~~l~~~~~----~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~ 320 (543)
+ .....+++++|+|||||||.||||++ +|+++..... .....+.+..+|++++.+|++|.+++......+.
T Consensus 142 --~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~ 218 (501)
T PRK13390 142 --P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA 218 (501)
T ss_pred --C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHh
Confidence 1 11122357999999999999999995 5555544211 1122356788999999999999998876555677
Q ss_pred hCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhH
Q 009114 321 SGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399 (543)
Q Consensus 321 ~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~ 399 (543)
.|+++++.+ .++..+++.|+++++|+++++|.++..+........
T Consensus 219 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------- 264 (501)
T PRK13390 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR---------------------------------- 264 (501)
T ss_pred cCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc----------------------------------
Confidence 899998876 689999999999999999999999988764210000
Q ss_pred HhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-CCCCCCcCCCCCCeEEEEee
Q 009114 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVD 478 (543)
Q Consensus 400 ~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~evkivd 478 (543)
+.....++|.+++||+++++++.+.+++.+++++++.||+||+++++...... ....+++|.|+++ +++|+|
T Consensus 265 ------~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d 337 (501)
T PRK13390 265 ------TRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD 337 (501)
T ss_pred ------ccCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEEC
Confidence 00001478999999999999999999998999999999999997655433222 2346789999999 799999
Q ss_pred cCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCC--CCeeeccceEEEecCCcEEEecC
Q 009114 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 479 ~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~--~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++.++.++ .|||+|+|++++.||+++|+.|++.+.. +||++|||+|++|+||+++|.||
T Consensus 338 -~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR 400 (501)
T PRK13390 338 -DDGNELPAGR---IGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADR 400 (501)
T ss_pred -CCCCCCCCCC---ceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeec
Confidence 6667777666 8999999999999999999999998853 68999999999999999999998
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=417.52 Aligned_cols=402 Identities=21% Similarity=0.232 Sum_probs=318.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
-|+.++|++.++++||++|+... . +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~ 73 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGA 73 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 37899999999999999999664 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++.+++.+++++++++.++++......+.++....+..+.++.+++...... ....+++++
T Consensus 74 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 147 (533)
T PRK07798 74 FKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDL------LPGAVDYED 147 (533)
T ss_pred HhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCccccc------CCccccHHH
Confidence 99999999999999999999999999999999998877777777666677777777765432110 112456777
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC---------ccc------CCCcEEEEe
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---------TKF------YPSDVYISY 303 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---------~~~------~~~d~~l~~ 303 (543)
+....... ..... ..+|.++|+|||||||.||||+++|+++...+...... ..+ ..+++++..
T Consensus 148 ~~~~~~~~-~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 148 ALAAGSPE-RDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHhccCCc-CCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 76543321 11112 23345789999999999999999999987654432111 111 567899999
Q ss_pred CChHHHHHHHHHHHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHH-HHHHHHHhccCchHHHHHHHH
Q 009114 304 LPLAHIYERANQVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIY-AGITSAVRTSGGLRERLFNAA 379 (543)
Q Consensus 304 lpl~h~~~~~~~~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~-~~~~~~~~~~~~~~~~~~~~a 379 (543)
+|+.|.+++...+.+++.|+++++.+ .++..+++.++++++|++..+|..+...+ ..+. .
T Consensus 226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~--------------- 289 (533)
T PRK07798 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A--------------- 289 (533)
T ss_pred cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c---------------
Confidence 99999999998888999999999987 58899999999999999999998775432 2111 0
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC
Q 009114 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG 458 (543)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~ 458 (543)
.......++|.+++||+++++++.+++++.+ ++.+++.||+||++.........
T Consensus 290 -------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~ 344 (533)
T PRK07798 290 -------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK 344 (533)
T ss_pred -------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC
Confidence 0001125899999999999999999999988 78999999999986554433221
Q ss_pred CCCCCCcC--CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC---CCCeeeccceEEEe
Q 009114 459 DNLSGHVG--SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID---EDGWFHTGDIGMWI 533 (543)
Q Consensus 459 ~~~~~~vG--~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~---~~gw~~TGDig~~~ 533 (543)
. ....| .+.++.+++|+| ++++..+.+.+. .|||+ +++.++.|||++++.|++.|. .++||+|||+|++|
T Consensus 345 ~--~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~-~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~ 419 (533)
T PRK07798 345 G--AVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGE-IGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVE 419 (533)
T ss_pred C--CccCCCCccCCCceEEEEC-CCCCCCCCCCCC-eeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEc
Confidence 1 12344 788999999999 555566666511 26665 566899999999999999884 24699999999999
Q ss_pred cCCcEEEecC
Q 009114 534 PGGRLKIIDR 543 (543)
Q Consensus 534 ~~G~l~i~gR 543 (543)
+||+|++.||
T Consensus 420 ~~g~l~~~GR 429 (533)
T PRK07798 420 ADGTITLLGR 429 (533)
T ss_pred CCCcEEEEcc
Confidence 9999999998
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=419.76 Aligned_cols=392 Identities=20% Similarity=0.219 Sum_probs=312.2
Q ss_pred HHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeE
Q 009114 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (543)
Q Consensus 86 ~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~ 165 (543)
...++++||++++... ++. +.+||+||.+++.++|++|.++|+++|++|+++++|+++|+++++||++.|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4567889999998663 222 459999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCcc
Q 009114 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (543)
Q Consensus 166 vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (543)
+|+++.++.+.+.++++.++++.++++......+.+.....+..+..+.++..... .....+++.....
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-- 145 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------EGFVGYAEAVAGL-- 145 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC---------cccccHHHHhcCC--
Confidence 99999999999999999999999999988777666655555555555555432110 1123344433211
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCccEEEe--cHHHHHHHH---HhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHH
Q 009114 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVL--SHGNLIASV---AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVY 320 (543)
Q Consensus 246 ~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~--th~~l~~~~---~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~ 320 (543)
+. ......++.++|+|||||||.||||++ +|.++.... ........+.+++++++.+|++|.+++...+.++.
T Consensus 146 -~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~ 223 (511)
T PRK13391 146 -PA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIR 223 (511)
T ss_pred -CC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 11 111234567899999999999999995 466654322 22233456788999999999999999888888899
Q ss_pred hCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhH
Q 009114 321 SGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399 (543)
Q Consensus 321 ~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~ 399 (543)
.|+++++.+ .++..+++.++++++|++.++|.++..+........
T Consensus 224 ~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------------------- 269 (511)
T PRK13391 224 LGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR---------------------------------- 269 (511)
T ss_pred cCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc----------------------------------
Confidence 999999887 699999999999999999999999987754210000
Q ss_pred HhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC-CCCCCCcCCCCCCeEEEEee
Q 009114 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVD 478 (543)
Q Consensus 400 ~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~evkivd 478 (543)
++...+++|.+++||+++++++.+.+++.+|+.+++.||+||+++++...... ....+++|.|+++ +++|+|
T Consensus 270 ------~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d 342 (511)
T PRK13391 270 ------DKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILD 342 (511)
T ss_pred ------ccCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEEC
Confidence 00011589999999999999999999999999999999999998765433222 2456799999999 799999
Q ss_pred cCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCC-CeeeccceEEEecCCcEEEecC
Q 009114 479 VPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-GWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 479 ~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~-gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++...+.++ .||||++|+ ++.|||++++.+++.++.+ |||+|||+|++++||.++|.||
T Consensus 343 -~~~~~~~~g~---~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR 403 (511)
T PRK13391 343 -DDGAELPPGE---PGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDR 403 (511)
T ss_pred -CCCCCCCCCC---ceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEecc
Confidence 5566666665 899999999 8899999999999998665 9999999999999999999998
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=408.84 Aligned_cols=357 Identities=23% Similarity=0.320 Sum_probs=295.2
Q ss_pred eHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecC
Q 009114 115 TYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVP 193 (543)
Q Consensus 115 Ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~ 193 (543)
||.||.+.+.++|+.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++.++.+.+.++++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccE
Q 009114 194 QTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273 (543)
Q Consensus 194 ~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKg 273 (543)
.....+..... .++.++.. +..................++++++++|||||||.||+
T Consensus 81 ~~~~~~~~~~~------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~ 137 (408)
T TIGR01733 81 ALASRLAGLVL------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKG 137 (408)
T ss_pred chhhhccccCC------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCE
Confidence 76654433211 11111110 00000000000011111457899999999999999999
Q ss_pred EEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecC----ChHhHHHHHHhhCCeEEEe
Q 009114 274 AVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCS 349 (543)
Q Consensus 274 v~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~----~~~~l~~~i~~~k~t~~~~ 349 (543)
|.+||++++..+......+.+.++|++++.+|+.|.+++...+.++..|+++++++. .+..+.+.++++++|.+.+
T Consensus 138 v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~ 217 (408)
T TIGR01733 138 VVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNL 217 (408)
T ss_pred EEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEe
Confidence 999999999988888777888899999999999999998888999999999998873 2578888899999999999
Q ss_pred chHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHH
Q 009114 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD 429 (543)
Q Consensus 350 ~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~ 429 (543)
+|.+++.+.+... ....++|.+++||+++++++.+
T Consensus 218 ~p~~~~~l~~~~~---------------------------------------------~~~~~l~~v~~~g~~~~~~~~~ 252 (408)
T TIGR01733 218 TPSLLALLAAALP---------------------------------------------PALASLRLVILGGEALTPALVD 252 (408)
T ss_pred CHHHHHHHHHhhh---------------------------------------------hcccCceEEEEeCccCCHHHHH
Confidence 9999999876321 1115899999999999999999
Q ss_pred HHHHhhC-CccccccChhhhccccccCCCC-C--C--CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccc
Q 009114 430 FLKICFG-GRVTEGYGMTETSCLISQLDEG-D--N--LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLI 503 (543)
Q Consensus 430 ~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~-~--~--~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v 503 (543)
++++.++ +.+++.||+||++..+...... + . +..++|.|+++++++|+|+ ++..++.++ .|||+|+|+++
T Consensus 253 ~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~---~Gel~v~~~~~ 328 (408)
T TIGR01733 253 RWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDD-DLRPVPVGV---VGELYIGGPGV 328 (408)
T ss_pred HHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECC-CCCCCCCCC---ceEEEecCccc
Confidence 9999997 8999999999998766422111 1 1 2678999999999999994 467777666 89999999999
Q ss_pred hhhhcCChhhhhhhcCCC------C--eeeccceEEEecCCcEEEecC
Q 009114 504 FKGYYKDEIQTKEVIDED------G--WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 504 ~~gY~~~~~~t~~~~~~~------g--w~~TGDig~~~~~G~l~i~gR 543 (543)
+.||+++++.|++.|..+ | ||+|||+|++|+||+++|.||
T Consensus 329 ~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR 376 (408)
T TIGR01733 329 ARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGR 376 (408)
T ss_pred cccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeec
Confidence 999999999999988443 3 999999999999999999998
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=416.23 Aligned_cols=380 Identities=19% Similarity=0.224 Sum_probs=312.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.++.++|++.+..+|+++++... + +.+||+||.+++.++|.+|.+.|+.+|++|+++++|+.+|+++++||
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~ 72 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA 72 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 57889999999999999998653 2 34999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|++++|+++.++.+.+.++++.+++++++++.+... ... .+..+.+++
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----------------------~~~~~~~~~ 123 (503)
T PRK04813 73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL-------EIL----------------------GIPVITLDE 123 (503)
T ss_pred HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc-------ccc----------------------CCcEEehHH
Confidence 999999999999999999999999999999999876410 000 011223333
Q ss_pred HHhcC--ccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHH
Q 009114 239 LLSQG--RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (543)
Q Consensus 239 l~~~~--~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~ 316 (543)
+.... ...........++++++++|||||||.||+|.+||+++...+......+.+..+|+++..+|++|..+....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 203 (503)
T PRK04813 124 LKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLY 203 (503)
T ss_pred hhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHH
Confidence 32211 1111112335678999999999999999999999999998887777667888999999999999999988788
Q ss_pred HHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 317 MTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 317 ~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
.++..|+++++++ .++..+++.++++++|++..+|.++..+.....
T Consensus 204 ~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~------------------------------ 253 (503)
T PRK04813 204 PTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS------------------------------ 253 (503)
T ss_pred HHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc------------------------------
Confidence 8999999999877 378899999999999999999999976543210
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCC-----CCCCCCCcC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-----GDNLSGHVG 466 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-----~~~~~~~vG 466 (543)
.++...+++|.++++|+++++++.+++++.| ++.+++.||+||++..++.... ......++|
T Consensus 254 ------------~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g 321 (503)
T PRK04813 254 ------------FNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIG 321 (503)
T ss_pred ------------cCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCccc
Confidence 0011125899999999999999999999998 7889999999998754432211 123445799
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc---CCCCeeeccceEEEecCCcEEEecC
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.|.++++++|+| +++...+.+. .|||+++|++++.|||++++.|.+.| +.++||+|||+|++ ++|++++.||
T Consensus 322 ~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR 396 (503)
T PRK04813 322 YAKPDSPLLIID-EEGTKLPDGE---QGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGR 396 (503)
T ss_pred ccCCCCEEEEEC-CCCCCCCCCC---ceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEecc
Confidence 999999999999 5666666665 89999999999999999999999987 33459999999999 9999999998
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-48 Score=414.71 Aligned_cols=388 Identities=22% Similarity=0.303 Sum_probs=305.7
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.++.+.+...+..+|+..++... ++. +.+||.||+++++++|++|.+.|+++||+|+|+++|+++|+++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~ 74 (545)
T PRK07768 2 SRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL 74 (545)
T ss_pred chHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 35788888899999999988665 442 56999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHH-------HHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCc
Q 009114 159 SAYSFISVPLYDTLGPDA-------VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~-------l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
+++|++++|+++..+.++ +.++++.++++++++++.....+.... . .++
T Consensus 75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~-----------------------~~~ 130 (545)
T PRK07768 75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLE-E-----------------------KGI 130 (545)
T ss_pred HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhc-c-----------------------cCC
Confidence 999999999999877654 456788899999999875443221111 0 012
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCC-cEEEEeCChHHHH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPS-DVYISYLPLAHIY 310 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~-d~~l~~lpl~h~~ 310 (543)
.+++++++..... .......++++++|+|||||||.||||+++|+++...+........+.++ |++++.+|++|.+
T Consensus 131 ~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 207 (545)
T PRK07768 131 RVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDM 207 (545)
T ss_pred ceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccch
Confidence 3455666654321 12234567999999999999999999999999999888777666777776 8999999999999
Q ss_pred HHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 311 ERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
++.. .+.++..|+++++++. ++..+.+.+++++++++.+.|.++..+...+......
T Consensus 208 g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------- 270 (545)
T PRK07768 208 GMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP----------------- 270 (545)
T ss_pred HHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-----------------
Confidence 9886 4567999999988752 7788899999999999988887776554422111000
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh---hCC---ccccccChhhhccccccCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC---FGG---RVTEGYGMTETSCLISQLDEG 458 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~---~~~---~i~~~YG~TE~~~~~~~~~~~ 458 (543)
..+| .+++|.+++||+++++++.+.+.+. +|. .+++.||+||++..+......
T Consensus 271 ----------~~~~-----------~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~ 329 (545)
T PRK07768 271 ----------GAFD-----------LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCG 329 (545)
T ss_pred ----------cCCC-----------chheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCC
Confidence 0011 1589999999999999999998874 555 499999999997655432221
Q ss_pred --------------------------CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChh
Q 009114 459 --------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (543)
Q Consensus 459 --------------------------~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~ 512 (543)
....+++|.|+++++++|+| ++++..+.++ .|||+++|+.++.||++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~---~Gel~v~~~~~~~gy~~~~~ 405 (545)
T PRK07768 330 AGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRG---VGVIELRGESVTPGYLTMDG 405 (545)
T ss_pred CCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCC---EEEEEEccCcccccccCCCC
Confidence 11345799999999999999 6777777665 89999999999999998654
Q ss_pred hhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 513 QTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 513 ~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.. +.++.+|||+|||+|++++||.++++||
T Consensus 406 ~~-~~~~~~g~~~TGDl~~~~~~g~l~~~GR 435 (545)
T PRK07768 406 FI-PAQDADGWLDTGDLGYLTEEGEVVVCGR 435 (545)
T ss_pred Cc-ccccCCCeeeccceEEEecCCEEEEEcc
Confidence 43 4445789999999999999999999998
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=408.52 Aligned_cols=372 Identities=22% Similarity=0.282 Sum_probs=302.7
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEe
Q 009114 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (543)
Q Consensus 112 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~ 191 (543)
+.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+.+.+++++++++++|+
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCHHHHHhhccCCC-CeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCC
Q 009114 192 VPQTLNSLLSCLSEVP-TVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGT 270 (543)
Q Consensus 192 ~~~~~~~l~~~~~~~~-~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~ 270 (543)
+......+.+.....+ .++.+++.+... .....|++...... .......+++++++|||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence 9887766655544444 455555543211 12234555543221 1122355778999999999999
Q ss_pred ccEEEecHHHHHHHH------HhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhC
Q 009114 271 PKGAVLSHGNLIASV------AGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALR 343 (543)
Q Consensus 271 PKgv~~th~~l~~~~------~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k 343 (543)
||||+++|.++.... ...........++++++.+|++|.+++...+.++..|+++.+.+ .++..+++.+++++
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 234 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR 234 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence 999999987754322 11111122357889999999999999888888999999998887 68999999999999
Q ss_pred CeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCC
Q 009114 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPL 423 (543)
Q Consensus 344 ~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l 423 (543)
+|++.++|+++..+.+.-... ...+| .+++|.+++||+++
T Consensus 235 ~t~~~~~P~~~~~l~~~~~~~-----------------------------~~~~~-----------~~~lr~i~~~g~~~ 274 (502)
T PRK08276 235 VTHSQLVPTMFVRMLKLPEEV-----------------------------RARYD-----------VSSLRVAIHAAAPC 274 (502)
T ss_pred CeEEEehHHHHHHHHhCcccc-----------------------------CCCCC-----------cccceEEEecCCCC
Confidence 999999999998876421000 00011 15899999999999
Q ss_pred CHHHHHHHHHhhCCccccccChhhhccccccCCCC-CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCcc
Q 009114 424 SPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL 502 (543)
Q Consensus 424 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~ 502 (543)
+.++.+++.+.++..+++.||+||++++++..... ....+++|.|+ +++++|+| ++++.++.++ .|||+++|+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g~---~Gel~v~~~~ 349 (502)
T PRK08276 275 PVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPGE---IGTVYFEMDG 349 (502)
T ss_pred CHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcCCC---ceEEEEECCC
Confidence 99999999999998999999999998765544332 34567899999 88999999 6677777665 8999999999
Q ss_pred chhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 503 IFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 503 v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++.||+++++.+++.+.++|||+|||+|+++++|.+++.||
T Consensus 350 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR 390 (502)
T PRK08276 350 YPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDR 390 (502)
T ss_pred ccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEecc
Confidence 99999999999999998789999999999999999999998
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=407.83 Aligned_cols=380 Identities=21% Similarity=0.266 Sum_probs=299.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEe
Q 009114 112 KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191 (543)
Q Consensus 112 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~ 191 (543)
+.+||.||.++++++|++|.++|+++|++|+++++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|+
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCHHHHHhhccCCCCeeEEEEeCCCCCCCC-----CCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCC
Q 009114 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP-----SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSG 266 (543)
Q Consensus 192 ~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSG 266 (543)
+......+.+... ....++..+...+... ............|+++..... +.....++++++++||||
T Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASALP---AGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhhh---cccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence 8877665543321 1112222221110000 000011122345666543221 222345789999999999
Q ss_pred CCCCccEEEecHHHH---HHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhh
Q 009114 267 TTGTPKGAVLSHGNL---IASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAAL 342 (543)
Q Consensus 267 TTG~PKgv~~th~~l---~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~ 342 (543)
|||.||+|+++|.+. ..........+.+.++|++++.+|++|..+....+.++..|+++++.+ .++..+++.++++
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 242 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLIERH 242 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHHHHc
Confidence 999999999876543 333333334467889999999999999998887777888999998876 6899999999999
Q ss_pred CCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCC
Q 009114 343 RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASP 422 (543)
Q Consensus 343 k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~ 422 (543)
++|++.++|.++..+....... .+.....++|.+++||++
T Consensus 243 ~~t~~~~~P~~~~~l~~~~~~~----------------------------------------~~~~~~~~l~~v~~gg~~ 282 (509)
T PRK12406 243 RITHMHMVPTMFIRLLKLPEEV----------------------------------------RAKYDVSSLRHVIHAAAP 282 (509)
T ss_pred CCeEEEccHHHHHHHHhCchhh----------------------------------------cccCCCCceeEEEEcCCC
Confidence 9999999999998876421000 000011589999999999
Q ss_pred CCHHHHHHHHHhhCCccccccChhhhccccccCCCC-CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCc
Q 009114 423 LSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP 501 (543)
Q Consensus 423 l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~ 501 (543)
+++++.+++++.+++.+++.||+||++.+++..... ...++++|.|+++++++|+| ++++..+.++ .|||+++|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~---~Gel~v~~~ 358 (509)
T PRK12406 283 CPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGE---IGEIYSRIA 358 (509)
T ss_pred CCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCCCC---ceEEEEECC
Confidence 999999999999999999999999998766544322 24567899999999999999 5666666665 899999999
Q ss_pred cchh-hhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 502 LIFK-GYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 502 ~v~~-gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.++. ||+++|+.+++.+ .+|||+|||+|++|+||.++|.||
T Consensus 359 ~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR 400 (509)
T PRK12406 359 GNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDR 400 (509)
T ss_pred ccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeec
Confidence 9875 9999999988776 799999999999999999999998
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=404.92 Aligned_cols=343 Identities=24% Similarity=0.306 Sum_probs=285.6
Q ss_pred HHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeE
Q 009114 86 VRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFIS 165 (543)
Q Consensus 86 ~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~ 165 (543)
...+.++|+++|+... + +.+||+||.++++++|..|.+.|+++|++|+++++|+++|+++++||+++|+++
T Consensus 10 ~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~ 80 (458)
T PRK09029 10 RHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARV 80 (458)
T ss_pred HHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 5558899999998543 2 349999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCcc
Q 009114 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRS 245 (543)
Q Consensus 166 vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 245 (543)
+|+++.++++.+.+++++++++.++++.+... +.. +..+ .+. . .
T Consensus 81 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-------~~~~----------------------~~~---~---~ 124 (458)
T PRK09029 81 LPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA-------LTSL----------------------HLQ---L---V 124 (458)
T ss_pred eecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh-------cccc----------------------ccc---c---c
Confidence 99999999999999999999999998765422 100 0000 000 0 0
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEE
Q 009114 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAV 325 (543)
Q Consensus 246 ~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i 325 (543)
.........++++++++|||||||.||||++||++++..+......+.+.++|++++.+|++|.+++...+.++..|+++
T Consensus 125 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v 204 (458)
T PRK09029 125 EGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATL 204 (458)
T ss_pred cccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceE
Confidence 00112235678999999999999999999999999999988877778889999999999999999988777889999999
Q ss_pred EEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHH
Q 009114 326 GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405 (543)
Q Consensus 326 ~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~ 405 (543)
++.+. ..+.+.+ .++|.+..+|+++.++......
T Consensus 205 ~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~------------------------------------------ 238 (458)
T PRK09029 205 VVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE------------------------------------------ 238 (458)
T ss_pred EeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc------------------------------------------
Confidence 98664 5566666 4899999999999887652100
Q ss_pred HHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCC
Q 009114 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYT 485 (543)
Q Consensus 406 ~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~ 485 (543)
..++|.+++||+++++.+.++++.. +++++++||+||++...+.... + ...++|.|+++++++|++
T Consensus 239 ----~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~-~-~~~~~G~~~~~~~~~i~~------- 304 (458)
T PRK09029 239 ----PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRA-D-GLAGVGSPLPGREVKLVD------- 304 (458)
T ss_pred ----CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCC-C-CCCCCCCCCCCCEEEEeC-------
Confidence 1379999999999999999999864 9999999999999865543322 2 235699999999999986
Q ss_pred CCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 486 SEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 486 ~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|||+|+|+.++.||+++++.+.... .+|||+|||+|++| ||+++|.||
T Consensus 305 --------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR 352 (458)
T PRK09029 305 --------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGR 352 (458)
T ss_pred --------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecc
Confidence 8999999999999999999887554 78999999999999 999999998
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=400.87 Aligned_cols=322 Identities=19% Similarity=0.165 Sum_probs=262.4
Q ss_pred eeHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEec
Q 009114 114 MTYGEAGTARTEVGSGLIYHGI-SKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192 (543)
Q Consensus 114 ~Ty~el~~~~~~la~~L~~~g~-~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~ 192 (543)
+.|+||.+++.++|++|.+.|+ ++|++|+++++|++|++++++||+++|+++||+++.++.+++.++++++++++++++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 6899999999999999999998 579999999999999999999999999999999999999999999999999999987
Q ss_pred CcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCcc
Q 009114 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272 (543)
Q Consensus 193 ~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PK 272 (543)
.+..... ... .. .......++++++++|||||||.||
T Consensus 100 ~~~~~~~---------------~~~----------------~~------------~~~~~~~~~~~~~i~~TSGTTG~PK 136 (452)
T PRK07445 100 DQLKLSH---------------PPP----------------LP------------SQGILPNLETGWIMIPTGGSSGQIR 136 (452)
T ss_pred Ccccccc---------------CCC----------------CC------------ccccCCCCCCcEEEEeCCCCCCCCc
Confidence 6532100 000 00 0001235689999999999999999
Q ss_pred EEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecC-ChHhHHHHHHhhCCeEEEech
Q 009114 273 GAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSVP 351 (543)
Q Consensus 273 gv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~i~~~k~t~~~~~P 351 (543)
||++||+++++.+......+.+.+ ++.++.+|++|.+++...+.+++.|+++++.+. +..........+++|++..+|
T Consensus 137 gV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP 215 (452)
T PRK07445 137 FAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVP 215 (452)
T ss_pred EEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehH
Confidence 999999999888776665555554 467889999999999888889999999998762 223223344578899999999
Q ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHH
Q 009114 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFL 431 (543)
Q Consensus 352 ~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~ 431 (543)
.++..+.+.. . ...+++|.+++||+++++++.+.+
T Consensus 216 ~~l~~l~~~~------~---------------------------------------~~l~~l~~i~~gG~~l~~~~~~~~ 250 (452)
T PRK07445 216 TQLQRLLQLR------P---------------------------------------QWLAQFRTILLGGAPAWPSLLEQA 250 (452)
T ss_pred HHHHHHHhhC------h---------------------------------------hhhhcceEEEECCccCCHHHHHHH
Confidence 9999875410 0 001489999999999999999988
Q ss_pred HHhhCCccccccChhhhccccccCCCCC--CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcC
Q 009114 432 KICFGGRVTEGYGMTETSCLISQLDEGD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYK 509 (543)
Q Consensus 432 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~ 509 (543)
+. +++++++.||+||++..++...+.+ ...+++|+|+|+++++|+ .++ .|||+|+|++++.||++
T Consensus 251 ~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~g~---~Gel~v~g~~~~~gY~~ 317 (452)
T PRK07445 251 RQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQ---TGNITIQAQSLALGYYP 317 (452)
T ss_pred Hh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------CCC---cceEEEeCCccchhhcC
Confidence 76 4899999999999876554443332 345789999999999998 122 79999999999999998
Q ss_pred ChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 510 DEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 510 ~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++. +.+|||+|||+|++|+||+++|+||
T Consensus 318 ~~~------~~~g~~~TGDl~~~d~dG~l~~~GR 345 (452)
T PRK07445 318 QIL------DSQGIFETDDLGYLDAQGYLHILGR 345 (452)
T ss_pred Ccc------CCCCEEECCCEEEEcCCCCEEEEee
Confidence 653 3589999999999999999999998
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=404.89 Aligned_cols=351 Identities=17% Similarity=0.152 Sum_probs=258.1
Q ss_pred ccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC------HHHHHhhccCCCCeeEEEEeCCC
Q 009114 145 FVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT------LNSLLSCLSEVPTVRLIVVIGGI 218 (543)
Q Consensus 145 ~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~------~~~l~~~~~~~~~l~~ii~~~~~ 218 (543)
++|++|++++++||+++|+++||+++.++++++.+++++++++++|+++.. .+.+.++....+ .+.+++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998642 222222221112 2333332211
Q ss_pred CCCCCCCCcCCCceeeeHHHHHhcCccC------CCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCc
Q 009114 219 DDQIPSLPITTGVQILTYSNLLSQGRSN------LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGT 292 (543)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~ 292 (543)
.. .. . .......+|+++...+... ........++|+++|+|||||||.||||++||+|++.........+
T Consensus 80 ~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 155 (499)
T PLN03051 80 EP-VA--V-PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM 155 (499)
T ss_pred cc-cC--C-ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc
Confidence 10 00 0 0000124577765322110 1111123568999999999999999999999999887665544556
Q ss_pred ccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCc
Q 009114 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGG 370 (543)
Q Consensus 293 ~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~ 370 (543)
.+.++|++++.+|++|.+++...+.+++.|+++++++ .++..+++.|+++++|++.++|+++..|.+.....
T Consensus 156 ~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~------ 229 (499)
T PLN03051 156 DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA------ 229 (499)
T ss_pred CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc------
Confidence 7889999999999999999876777899999999886 47889999999999999999999999875521000
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh--CCccccccChhhh
Q 009114 371 LRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTET 448 (543)
Q Consensus 371 ~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~--~~~i~~~YG~TE~ 448 (543)
......+++|.+++||+++++++.+++++.+ +++++++||+||+
T Consensus 230 ----------------------------------~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~ 275 (499)
T PLN03051 230 ----------------------------------MEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTEL 275 (499)
T ss_pred ----------------------------------cccCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccc
Confidence 0000014899999999999999998887743 4789999999998
Q ss_pred ccccccCCC-CCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccc--hhhhcCChhhhhhhcCC-----
Q 009114 449 SCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLI--FKGYYKDEIQTKEVIDE----- 520 (543)
Q Consensus 449 ~~~~~~~~~-~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v--~~gY~~~~~~t~~~~~~----- 520 (543)
++..+.... .....+++|.|.++++++|+| ++++.++.++. ..|||+|+|+.+ +.|||+++ .++..++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~-~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~ 352 (499)
T PLN03051 276 ASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQP-CVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYG 352 (499)
T ss_pred cceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCC-cceEEEEecCcCCCCccccCCc-ccceeeecCCccc
Confidence 654332222 223567899999999999999 56666665531 269999999987 58999865 34433322
Q ss_pred ---CCeeeccceEEEecCCcEEEecC
Q 009114 521 ---DGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 521 ---~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.+||+|||+|++|+||+|+|+||
T Consensus 353 ~~~~~~~~TGDlg~~d~dG~l~~~gR 378 (499)
T PLN03051 353 SKGMPLRRHGDIMKRTPGGYFCVQGR 378 (499)
T ss_pred cCCcceeecCCeEEECCCCcEEEEec
Confidence 12799999999999999999998
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=393.15 Aligned_cols=340 Identities=26% Similarity=0.314 Sum_probs=281.4
Q ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCc
Q 009114 115 TYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (543)
Q Consensus 115 Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~ 194 (543)
||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|+++.++.+.+..++++++++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEE
Q 009114 195 TLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGA 274 (543)
Q Consensus 195 ~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv 274 (543)
..... + ....+.++................+++++++|||||||.||+|
T Consensus 81 ~~~~~---------~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v 129 (436)
T TIGR01923 81 LEEKD---------F----------------------QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAV 129 (436)
T ss_pred ccccc---------e----------------------eecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEE
Confidence 32110 0 0011222211111111112234568999999999999999999
Q ss_pred EecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHhHHHHHHhhCCeEEEechHHH
Q 009114 275 VLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLY 354 (543)
Q Consensus 275 ~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l 354 (543)
.++|+++...+......+.+.++|++++.+|++|++++...+.++..|+++++.+.. ..+++.++++++|++.++|.++
T Consensus 130 ~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~~~P~~l 208 (436)
T TIGR01923 130 PHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHISLVPTQL 208 (436)
T ss_pred EEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEEeHHHHH
Confidence 999999999888877778899999999999999999998788899999999987643 3889999999999999999999
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh
Q 009114 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434 (543)
Q Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~ 434 (543)
.++.+... ...++|.+++||+++++++.++++.
T Consensus 209 ~~l~~~~~----------------------------------------------~~~~l~~~~~~G~~~~~~~~~~~~~- 241 (436)
T TIGR01923 209 NRLLDEGG----------------------------------------------HNENLRKILLGGSAIPAPLIEEAQQ- 241 (436)
T ss_pred HHHHhCcC----------------------------------------------CCCceEEEEECCCCCCHHHHHHHHH-
Confidence 88755200 0038999999999999999998876
Q ss_pred hCCccccccChhhhccccccCCCCC-CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhh
Q 009114 435 FGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (543)
Q Consensus 435 ~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~ 513 (543)
+++++++.||+||+++.++...... ....++|.|++++++++.+.+. + ..|||+++|+.++.||+++++.
T Consensus 242 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~------~---~~Gel~v~~~~~~~gy~~~~~~ 312 (436)
T TIGR01923 242 YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK------E---GHGEIMVKGANLMKGYLYQGEL 312 (436)
T ss_pred hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC------C---CceEEEEECCccchhhCCChhh
Confidence 5999999999999987655433322 2223599999999999944222 1 3799999999999999999988
Q ss_pred hhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 514 TKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 514 t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+...+ .+|||+|||+|++++||.+++.||
T Consensus 313 ~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR 341 (436)
T TIGR01923 313 TPAFE-QQGWFNTGDIGELDGEGFLYVLGR 341 (436)
T ss_pred hhhhh-cCCCeeccceEEEcCCCCEEEecc
Confidence 87766 689999999999999999999998
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=423.40 Aligned_cols=393 Identities=16% Similarity=0.167 Sum_probs=288.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
....|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45678999999999999999999653 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||++|. +++.++++++++++||++.+..+.+.+. ...+++++......... ........
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~~~~~--~~~~~~~~ 583 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESRDLDL--PDDADVID 583 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccccccC--Ccchhhhh
Confidence 9999999999999985 6899999999999999988776655332 13455554321100000 00001112
Q ss_pred HHHHHhcCccCC--CCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 009114 236 YSNLLSQGRSNL--QPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 236 ~~~l~~~~~~~~--~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
++++.......+ ....+..++|+++|+|| ||||.||++.++|.+...........+.+.++|++++.+|++|++++.
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~ 662 (994)
T PRK07868 584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLL 662 (994)
T ss_pred hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHH
Confidence 222111100000 01112246899999999 588888888888877655444444456788999999999999999998
Q ss_pred HHHH-HHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCC
Q 009114 314 NQVM-TVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (543)
Q Consensus 314 ~~~~-~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (543)
..+. ++..|+++++.+ .++..+++.|+++++|+++.+|+++..+.+.-. .
T Consensus 663 ~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~-----~----------------------- 714 (994)
T PRK07868 663 VSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA-----F----------------------- 714 (994)
T ss_pred HHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC-----C-----------------------
Confidence 7655 455566665655 699999999999999999999999988765200 0
Q ss_pred CCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC-CccccccChhhhccccccCCCCCCCCCCcCCCCC
Q 009114 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNA 470 (543)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~ 470 (543)
. ....+++|.++. +.+++++.+.+++.|+ ++++++||+||++..... ......+++|+|+|
T Consensus 715 ---~-----------~~~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~~~~~~svG~p~p 776 (994)
T PRK07868 715 ---V-----------LHGNHPVRLFIG--SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VSGAKIGSKGRPLP 776 (994)
T ss_pred ---c-----------cCCCCceEEEec--CCCCHHHHHHHHHHhCchheeeeeecccccccccc--cCCCCCcccCCccC
Confidence 0 000147998773 3499999999999986 889999999998754432 22345689999999
Q ss_pred Ce-EEEEeec----------CCC--CCCCCCCCCCCceEEEeCccchhhhcCChhhhh--hhcC-CCCeeeccceEEEec
Q 009114 471 AC-EIKLVDV----------PEM--NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTK--EVID-EDGWFHTGDIGMWIP 534 (543)
Q Consensus 471 ~~-evkivd~----------~~~--~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~--~~~~-~~gw~~TGDig~~~~ 534 (543)
++ +++|.+. +++ +..+.+ +.|||+++|+.+ + ||+.+. +.|. .||||+|||+|++|+
T Consensus 777 g~~~v~i~~~d~~~g~li~d~~G~~~~~~~g---e~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~ 848 (994)
T PRK07868 777 GAGRVELAAYDPEHDLILEDDRGFVRRAEVN---EVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDD 848 (994)
T ss_pred CCCceeEEEecCcCCceeecCCceEEEcCCC---CceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcC
Confidence 98 7877521 111 112233 489999999864 3 465543 3453 589999999999999
Q ss_pred CCcEEEecC
Q 009114 535 GGRLKIIDR 543 (543)
Q Consensus 535 ~G~l~i~gR 543 (543)
||+|+|+||
T Consensus 849 dG~l~~~GR 857 (994)
T PRK07868 849 DGDYWLVDR 857 (994)
T ss_pred CCCEEEecc
Confidence 999999998
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=380.14 Aligned_cols=405 Identities=21% Similarity=0.293 Sum_probs=321.8
Q ss_pred CCHHHHHHHHHHh-cCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 79 GTTHDNFVRAVDT-FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 79 ~tl~~~~~~~~~~-~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
+-.+.++.+..+. .+|.+++.++ +...+....+||.|+.+++.++|..|.+.|+++||+|++++|+.+|++++++|
T Consensus 64 n~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA 140 (626)
T KOG1175|consen 64 NACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLA 140 (626)
T ss_pred hhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHH
Confidence 3344455555444 4888888887 33223333389999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH---------HHHHhhccCCCC-----eeEEEEeCCCCCCCC
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPT-----VRLIVVIGGIDDQIP 223 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~-----l~~ii~~~~~~~~~~ 223 (543)
|.++|++.+++...++++++.+.|+++++++||+.+... ..+.+.....+. .+.+++.+..
T Consensus 141 ~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 215 (626)
T KOG1175|consen 141 CARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN----- 215 (626)
T ss_pred HhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc-----
Confidence 999999999999999999999999999999999976422 112222211111 1111111110
Q ss_pred CCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHH-HHHHHHhhhcCcccCCCcEEEE
Q 009114 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN-LIASVAGATLGTKFYPSDVYIS 302 (543)
Q Consensus 224 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~-l~~~~~~~~~~~~~~~~d~~l~ 302 (543)
+.+.|++++..... ..++.+.+.+|+.+|+|||||||.|||+.+|+.. ++..+......+.++++|++++
T Consensus 216 --------~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~ 286 (626)
T KOG1175|consen 216 --------RDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWC 286 (626)
T ss_pred --------ccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEE
Confidence 13456665444333 2346677889999999999999999999999877 5555666666699999999999
Q ss_pred eCChHHHHHHHH-HHHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHH
Q 009114 303 YLPLAHIYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (543)
Q Consensus 303 ~lpl~h~~~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 378 (543)
+..+.|+.+-+. .+.+|+.|++++++. +++..+++.+.++++|++++.|+.++.+.......+..
T Consensus 287 ~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~----------- 355 (626)
T KOG1175|consen 287 ASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTS----------- 355 (626)
T ss_pred ecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccc-----------
Confidence 999999999888 456999999999997 48899999999999999999999999876532211110
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCC-ccccccChhhhccccccCCC
Q 009114 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDE 457 (543)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~ 457 (543)
++ + ++||.+.++|+|++++..+++...++. +|++.||+||+++.+....+
T Consensus 356 ------------------~~----------~-~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~ 406 (626)
T KOG1175|consen 356 ------------------YS----------L-KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKP 406 (626)
T ss_pred ------------------cc----------c-ceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccC
Confidence 00 0 379999999999999999999999987 69999999999988887777
Q ss_pred CC--CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCc---cchhhhcCChhhhhhhcCC--CCeeeccceE
Q 009114 458 GD--NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGP---LIFKGYYKDEIQTKEVIDE--DGWFHTGDIG 530 (543)
Q Consensus 458 ~~--~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~---~v~~gY~~~~~~t~~~~~~--~gw~~TGDig 530 (543)
.. ..+++.|.|.+++.+.|+|. +++..+... ..|||+++.+ +.+++||+|++....+.-. .|+|.|||.|
T Consensus 407 g~~p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~--~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~ 483 (626)
T KOG1175|consen 407 GKLPIKPGSAGKPFPGYDVQILDE-NGNELPPST--GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGG 483 (626)
T ss_pred CCCCcCccccCCCCCCcceEEECC-CCCCcCCCC--ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCce
Confidence 66 88899999999999999994 666655543 3899999974 7799999999966665434 8999999999
Q ss_pred EEecCCcEEEecC
Q 009114 531 MWIPGGRLKIIDR 543 (543)
Q Consensus 531 ~~~~~G~l~i~gR 543 (543)
++|+||+++|.||
T Consensus 484 ~rd~dGY~~i~GR 496 (626)
T KOG1175|consen 484 RRDEDGYYWILGR 496 (626)
T ss_pred EEcCCceEEEEec
Confidence 9999999999999
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=365.05 Aligned_cols=303 Identities=13% Similarity=0.114 Sum_probs=258.8
Q ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEec
Q 009114 113 WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192 (543)
Q Consensus 113 ~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~ 192 (543)
.+||+||.++++++|+.|. +|+++|++|+|+++|+++|+++++||+++|++++|+++..+.+.+..++++++++.++++
T Consensus 8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~ 86 (414)
T PRK08308 8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG 86 (414)
T ss_pred eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence 5999999999999999985 789999999999999999999999999999999999999999999999999999999986
Q ss_pred CcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCcc
Q 009114 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPK 272 (543)
Q Consensus 193 ~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PK 272 (543)
+.... + . ......++++++|+|||||||.||
T Consensus 87 ~~~~~-----------~---------~-----------------------------~~~~~~~~~~~~i~~TSGtTG~PK 117 (414)
T PRK08308 87 ESDFT-----------K---------L-----------------------------EAVNYLAEEPSLLQYSSGTTGEPK 117 (414)
T ss_pred Ccccc-----------c---------c-----------------------------cCCCCCCCCceEEEECCCCCCCCc
Confidence 53100 0 0 001235688999999999999999
Q ss_pred EEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEec
Q 009114 273 GAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSV 350 (543)
Q Consensus 273 gv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~ 350 (543)
||++||+++.+.+......+.+..+|+.+..+|++|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++
T Consensus 118 gv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~ 197 (414)
T PRK08308 118 LIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAV 197 (414)
T ss_pred EEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcC
Confidence 999999999988887777778889999999999999999866 567899999998876 689999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHH
Q 009114 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDF 430 (543)
Q Consensus 351 P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~ 430 (543)
|.++..+.+.... ..+++.+++||+++++++.+.
T Consensus 198 P~~~~~l~~~~~~----------------------------------------------~~~l~~~~~~G~~l~~~~~~~ 231 (414)
T PRK08308 198 PLMLHILGRLLPG----------------------------------------------TFQFHAVMTSGTPLPEAWFYK 231 (414)
T ss_pred HHHHHHHHhcCCc----------------------------------------------cccccEEEEccCCCCHHHHHH
Confidence 9999887542100 026788999999999999999
Q ss_pred HHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCC
Q 009114 431 LKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD 510 (543)
Q Consensus 431 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~ 510 (543)
+++. +.++++.||+||++++... ......+++|+|+|++++++.+. .++ .|||++++
T Consensus 232 ~~~~-~~~~~~~YG~tE~~~~~~~--~~~~~~~~~G~p~~~~~~~~~~~-------~~~---~gel~v~~---------- 288 (414)
T PRK08308 232 LRER-TTYMMQQYGCSEAGCVSIC--PDMKSHLDLGNPLPHVSVSAGSD-------ENA---PEEIVVKM---------- 288 (414)
T ss_pred HHHh-CChhhhccCccccCCeeec--CCCCCCCccCccCCCeEEEEecC-------CCC---CceEEEEc----------
Confidence 9887 5789999999999764432 22345678999999999998751 233 69999985
Q ss_pred hhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 511 EIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 511 ~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.++||+|||+|++|+||+++|+||
T Consensus 289 ---------~~~~~~TGDl~~~~~dg~l~~~GR 312 (414)
T PRK08308 289 ---------GDKEIFTKDLGYKSERGTLHFMGR 312 (414)
T ss_pred ---------CCceEECCceEEECCCccEEEecc
Confidence 368999999999999999999998
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=345.41 Aligned_cols=405 Identities=22% Similarity=0.215 Sum_probs=307.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
....|++++|.+.++++|+++|+.+. +. .+.+||+|+.++++++|+.|+..|++.||.||++++|++|++...
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYE---GP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEe---CC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence 35689999999999999999999887 22 356999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCee-EEEEeCCCCCCCCCCCcCCCceee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVR-LIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~-~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++.+++|++...||+++..+.+.+-++-++++++|++.+..+.+.++.+.+.... .+...+.... ...+.
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~---------~~g~~ 217 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSV---------PDGIE 217 (649)
T ss_pred HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCC---------CchHH
Confidence 9999999999999999999999999999999999999998888887743332111 1222221110 00112
Q ss_pred eHHHHHhcCccCCCC---CCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 009114 235 TYSNLLSQGRSNLQP---FSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~---~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~ 311 (543)
++.+.+......+.| ....+-.++++.+|||||||.||.+++||..+......+...++++++|+++..+||+|..+
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa 297 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAA 297 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHH
Confidence 222222222222222 12244568999999999999999999999998888877777899999999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
.+. ...++..|+++++-. ++..++++|..++++|++--+-.+.+-|+..-...
T Consensus 298 ~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~------------------------- 352 (649)
T KOG1179|consen 298 GILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSP------------------------- 352 (649)
T ss_pred HHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCCh-------------------------
Confidence 888 556999999999987 89999999999999999988887777765521111
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCc-cccccChhhhccccccCCCCCCCCCCcCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHVGSP 468 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~-i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p 468 (543)
+.-.+++|.++-.| +.+++++.|...||+. |.+.||+||....... .+...|.+|..
T Consensus 353 -----------------~er~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N---~d~~vGA~G~~ 410 (649)
T KOG1179|consen 353 -----------------EERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVN---YDGRVGACGFM 410 (649)
T ss_pred -----------------hhcCceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCcceeee---ecCccccccch
Confidence 11125888887444 9999999999999876 9999999997543332 24555555543
Q ss_pred CC------CeEEEEeecCCCCCCC-------CCCCCCCceEEE--eCccc---hhhhcCChhhhhhhc------CCCCee
Q 009114 469 NA------ACEIKLVDVPEMNYTS-------EDQPCPRGEICV--RGPLI---FKGYYKDEIQTKEVI------DEDGWF 524 (543)
Q Consensus 469 ~~------~~evkivd~~~~~~~~-------~~~p~~~GEi~v--~g~~v---~~gY~~~~~~t~~~~------~~~gw~ 524 (543)
.- -+++-=+|+++++... .-+|++.|.+.- .-.+- |.||.+.++.|++.+ ..|-||
T Consensus 411 ~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f 490 (649)
T KOG1179|consen 411 SRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYF 490 (649)
T ss_pred hhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEE
Confidence 21 1233334545554332 222334664432 22333 899999888887755 345699
Q ss_pred eccceEEEecCCcEEEecC
Q 009114 525 HTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 525 ~TGDig~~~~~G~l~i~gR 543 (543)
.|||+-.+|+.|++||.||
T Consensus 491 ~tGDlLv~D~~GylYF~DR 509 (649)
T KOG1179|consen 491 NTGDLLVADELGYLYFKDR 509 (649)
T ss_pred eeCcEEEEecCCcEEEecc
Confidence 9999999999999999998
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=332.31 Aligned_cols=384 Identities=20% Similarity=0.208 Sum_probs=310.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...+++++|...+.+.|++.++... + ..+||+|+.++++++|+.|...|+.+++.|+++.+.++++++++
T Consensus 224 ~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~ 294 (642)
T COG1020 224 PLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVAL 294 (642)
T ss_pred CccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHH
Confidence 34578999999999999999777553 2 34999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+|++++|..+||+++.++.+.+.+++++++++.+++......... ..+. +..+...
T Consensus 295 l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~---------------- 350 (642)
T COG1020 295 LAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV----GLPG----LALDDAL---------------- 350 (642)
T ss_pred HHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc----cCCc----ccccccc----------------
Confidence 999999999999999999999999999999999998732211000 0110 1111100
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
.......+. .....+++.++++|||||||.||||+++|+++...+......+.++..|+++...++.+.......
T Consensus 351 ----~~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~ 425 (642)
T COG1020 351 ----SEIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEI 425 (642)
T ss_pred ----ccCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHH
Confidence 000000011 123456899999999999999999999999999977777777889999999999999888888888
Q ss_pred HHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCC
Q 009114 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (543)
Q Consensus 316 ~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (543)
+.++..|++++... .++..+.+.+.++++|++..+|.++..+.......
T Consensus 426 f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~--------------------------- 478 (642)
T COG1020 426 FGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAP--------------------------- 478 (642)
T ss_pred HHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhc---------------------------
Confidence 99999999999876 58899999999999999999999998876530000
Q ss_pred CCCchhhHHhHHHHHHHcC--CcEEEEEEcCCCCCHHHHHHHHHhh--CCccccccChhhhccccccCCCCCCC--CCCc
Q 009114 392 NPSPMWDRLVFNKIKDKLG--GRVRFMGSGASPLSPDVLDFLKICF--GGRVTEGYGMTETSCLISQLDEGDNL--SGHV 465 (543)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g--~~lr~i~~gga~l~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~--~~~v 465 (543)
.... ..+|.+++||+.++.++...+.... .+.+.+.||.||+............. ..++
T Consensus 479 ---------------~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~pi 543 (642)
T COG1020 479 ---------------DLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPI 543 (642)
T ss_pred ---------------cccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCc
Confidence 0000 2489999999999999999888765 46799999999966544433222211 4589
Q ss_pred CCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 466 G~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|.|+++.+++|.| +....++.+. .||+++.|.++.+||+++|+.|.+.|..+.+|+|||++++++||.+.++||
T Consensus 544 G~p~~n~~~~ild-~~~~~~p~gv---~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr 617 (642)
T COG1020 544 GRPVANTQLYILD-QGLRPLPLGV---PGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGR 617 (642)
T ss_pred ceeeCCCeEEEEC-CCCCcCCCCC---CeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEecc
Confidence 9999999999999 6667777776 699999999999999999999999996556999999999999999999998
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=273.37 Aligned_cols=218 Identities=30% Similarity=0.374 Sum_probs=179.0
Q ss_pred CCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEec--
Q 009114 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ-- 329 (543)
Q Consensus 252 ~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~-- 329 (543)
...++|+++|+|||||||.||||+++|+++...+...... +...++++..+|++|++++...+.+++.|++++++.
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~--~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~ 108 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR--LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVS 108 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc--cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcC
Confidence 3457899999999999999999999999998877655443 345678999999999999988888899999888732
Q ss_pred --CChHhHHHHHHhhC--CeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHH
Q 009114 330 --GDNMKLMDDMAALR--PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKI 405 (543)
Q Consensus 330 --~~~~~l~~~i~~~k--~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~ 405 (543)
.++..+++.+++++ .++...+|..+..+...-.
T Consensus 109 ~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~------------------------------------------- 145 (358)
T PRK07824 109 AGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA------------------------------------------- 145 (358)
T ss_pred CCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-------------------------------------------
Confidence 58899999999998 4566678887765543100
Q ss_pred HHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCC
Q 009114 406 KDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYT 485 (543)
Q Consensus 406 ~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~ 485 (543)
......++|.+++||+++++++.+.+++ +++++++.||+||+++.+. ..|.|++++++++.|
T Consensus 146 ~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~------- 207 (358)
T PRK07824 146 ATAALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED------- 207 (358)
T ss_pred ccCCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC-------
Confidence 0001158999999999999999999886 4899999999999875432 368999999999843
Q ss_pred CCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 486 SEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 486 ~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|||+++|+.++.||+++++.+ .|..+|||+|||+|++ ++|.++|+||
T Consensus 208 --------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR 254 (358)
T PRK07824 208 --------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGR 254 (358)
T ss_pred --------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEec
Confidence 999999999999999998754 4667899999999999 8999999998
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=215.17 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=165.5
Q ss_pred HHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCChhHHHHHHHHHhcCC
Q 009114 85 FVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSF 163 (543)
Q Consensus 85 ~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G~ 163 (543)
+...++++|+++++.+. +...++.+.+||+|+.++++++|++|++ +|+++||+|+|+++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46778899999999754 2221123569999999999999999998 7999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCC--CCCCCCCCCcCCCceeeeHHHHHh
Q 009114 164 ISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGG--IDDQIPSLPITTGVQILTYSNLLS 241 (543)
Q Consensus 164 ~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 241 (543)
+++|++ ++++++++++++..+.+. .+ +.++.+.. ..... .. .......+|.+...
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~ 135 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRV-AG--ELPPGVIDFAPEVR 135 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCC-CC--CCCCcccchhhhhh
Confidence 999995 789999999988766642 11 22333311 11000 00 00112246666555
Q ss_pred cCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHH
Q 009114 242 QGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVY 320 (543)
Q Consensus 242 ~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~-~~~~l~ 320 (543)
.......+.....++|++.|+||||| +|++++... ...+++++|+++ .+|++|++++.. .+.+++
T Consensus 136 ~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~ 201 (227)
T TIGR03089 136 VHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLA 201 (227)
T ss_pred ccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhc
Confidence 32222222214567999999999986 677766554 346688999999 999999999976 667999
Q ss_pred hCcEEEEec-CChHhHHHHHHhhCCe
Q 009114 321 SGVAVGFYQ-GDNMKLMDDMAALRPT 345 (543)
Q Consensus 321 ~G~~i~~~~-~~~~~l~~~i~~~k~t 345 (543)
.|+++++++ +|+..+++.|+++|+|
T Consensus 202 ~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 202 AGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred cCceEEEecCCCHHHHHHHHHhhcCC
Confidence 999999887 8999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=236.39 Aligned_cols=232 Identities=17% Similarity=0.189 Sum_probs=172.1
Q ss_pred CCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhh---hcCcccCCCcEEEEeCChHHHHH-HHHHHHHHHhCcEEEEe
Q 009114 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPLAHIYE-RANQVMTVYSGVAVGFY 328 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~---~~~~~~~~~d~~l~~lpl~h~~~-~~~~~~~l~~G~~i~~~ 328 (543)
..+++++.++|||||||.||+|.+||.++....... ....++.++|++++..+..+..+ +...+.+...|++++..
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 355788999999999999999999999986653322 22357788999988776554333 22345567788888766
Q ss_pred c-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHH
Q 009114 329 Q-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407 (543)
Q Consensus 329 ~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~ 407 (543)
+ .++..+++.|++++||+++++|+++..|.+..... +..+
T Consensus 152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~-------------------------~~~~-------------- 192 (422)
T TIGR02155 152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRM-------------------------GIDP-------------- 192 (422)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHc-------------------------CCCc--------------
Confidence 5 67889999999999999999999999887643211 0000
Q ss_pred HcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCC--CCeEEEEeecCCCCCC
Q 009114 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN--AACEIKLVDVPEMNYT 485 (543)
Q Consensus 408 ~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~evkivd~~~~~~~ 485 (543)
...++|.+++||+++++++.+.+++.||+++++.||+||+++........+. ..|.++ +...++|+|++++..+
T Consensus 193 -~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~~---~~g~~~~~~~~~~eivd~~~g~~v 268 (422)
T TIGR02155 193 -AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVET---QDGLHIWEDHFYPEIIDPHTGEVL 268 (422)
T ss_pred -ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeeccccc---CCCceEecCeeEEEEECCCCCCCC
Confidence 0037999999999999999999999999999999999998532111111111 123333 3578889997777777
Q ss_pred CCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecC-C-----cEEEecC
Q 009114 486 SEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-G-----RLKIIDR 543 (543)
Q Consensus 486 ~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~-G-----~l~i~gR 543 (543)
+.|+ .|||++++. +++.| ..+||+|||+|+++++ | .++|.||
T Consensus 269 ~~Ge---~Gelvvt~~------------~~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR 316 (422)
T TIGR02155 269 PDGE---EGELVFTTL------------TKEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGR 316 (422)
T ss_pred CCCC---eeEEEEecC------------Ccccc-ceeeEEcCcEEEEECCCCCcccccccccCc
Confidence 7776 899999973 44555 5789999999999876 4 4688888
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=227.03 Aligned_cols=210 Identities=19% Similarity=0.158 Sum_probs=156.3
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccC--CCcEEEEeCChHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFY--PSDVYISYLPLAHIY 310 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~--~~d~~l~~lpl~h~~ 310 (543)
+-.|.|++..... ++.++++|||||||.||||++||++++..+......+.+. +.|++++++|++|++
T Consensus 82 ~~~~~~~~~~~~~----------~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~ 151 (386)
T TIGR02372 82 IGEWVDLIAHHST----------PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLY 151 (386)
T ss_pred HHHHHHHHHhcCC----------CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHH
Confidence 4457777754332 4578899999999999999999999998877666555554 346899999999999
Q ss_pred HHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 311 ERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
++.. .+.++..|+++++.+ .++..+++.++. .|+++++|.++..+.+.- .
T Consensus 152 g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~----~---------------------- 203 (386)
T TIGR02372 152 GFLFSCLLPSRRGLEAKQLAAAPASGIMRHARP--GDLIVGTPFIWEQLADLD----Y---------------------- 203 (386)
T ss_pred HHHHHHHHHHHCCCeEEecCCCChHHHHHhhcc--CCEEEECcHHHHHHHhhC----c----------------------
Confidence 9865 566888999998866 677777777754 389999999998875420 0
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCC-ccccccChhhhccccccCCCCCCCCCCcCC
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGS 467 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (543)
..+++|. ++||+++++++.+.+++. +. .+++.||+||++++++... ++..|.
T Consensus 204 --------------------~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~ 256 (386)
T TIGR02372 204 --------------------RLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFR 256 (386)
T ss_pred --------------------CCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcc
Confidence 0135675 678999999999999875 64 6999999999987554321 234577
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+|+.++++ + + +. + .|+ ..|++|||+|+||++|+|+|+||
T Consensus 257 ~~p~~~~~~-~--~------~~-----~---~g~-------------------~~~~~tgD~g~~d~~G~l~i~GR 296 (386)
T TIGR02372 257 LLPDLACFA-D--T------LS-----S---AGL-------------------ARRLDLQDRLAWDKDGGFTILGR 296 (386)
T ss_pred cCCCccccC-C--C------cc-----C---CCc-------------------cceeecCceEEEcCCCcEEEecc
Confidence 888776543 1 1 10 0 122 23789999999999999999998
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=212.93 Aligned_cols=416 Identities=15% Similarity=0.151 Sum_probs=273.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEccCChhHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHG-ISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..++.|+|+..+.++||.+++..- ++.+.+.+.+||++|.++|.+++..|+..+ +++||.|+++++++.|++++++
T Consensus 769 l~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~ 845 (1363)
T KOG3628|consen 769 LLTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIY 845 (1363)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHH
Confidence 378999999999999999999887 887788899999999999999999999864 8999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCH------HHHHHHHHhcCccEEEecCcCHHHHHhhccCCCC-----eeEEEEeCCCCCCCCCC
Q 009114 157 ACSAYSFISVPLYDTLGP------DAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPT-----VRLIVVIGGIDDQIPSL 225 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~------~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~-----l~~ii~~~~~~~~~~~~ 225 (543)
||+.+|.+++|+.|.-.. ..+..|++..++..|+++......| +......+ ...++.+++...
T Consensus 846 ~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lL-rsr~~s~~~~~s~~p~i~~~~~~~~----- 919 (1363)
T KOG3628|consen 846 ACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLL-RSREASAHVDQSAIPLILVLPKLPE----- 919 (1363)
T ss_pred HHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHH-hhhhHHHHhhhhcchhhhcccccch-----
Confidence 999999999999876432 4688999999999999987644333 22211111 111222222110
Q ss_pred CcCCCceeeeHHHHHhcCc--cCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEe
Q 009114 226 PITTGVQILTYSNLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303 (543)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 303 (543)
+|..-.+.-. ..+.++....++.+|++-+.--++|.--|+.++|..+++.+....+...+.++.-++.+
T Consensus 920 ---------t~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~ 990 (1363)
T KOG3628|consen 920 ---------TIRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGC 990 (1363)
T ss_pred ---------hhhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEE
Confidence 0111101101 11122333457899999999999999999999999999999999998999999988988
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEec-----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHH
Q 009114 304 LPLAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (543)
Q Consensus 304 lpl~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 377 (543)
.+.+...|+.. ++...|.|....+++ -|+..|+..++++|+.-.+.+-..++.+.+.+..+.+........+
T Consensus 991 ~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~-- 1068 (1363)
T KOG3628|consen 991 SSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNT-- 1068 (1363)
T ss_pred ecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccc--
Confidence 88888888887 677899999988876 4889999999999998888888888777664433322211000000
Q ss_pred HHHHHHHHHHh-cCCCCCchhhHHhHHHHHHHcCCcEEEEEEc-CCCCCHHHHHHHHHhhCCccccccChhhhccccc--
Q 009114 378 AAYNAKKQAML-SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSG-ASPLSPDVLDFLKICFGGRVTEGYGMTETSCLIS-- 453 (543)
Q Consensus 378 ~a~~~k~~~~~-~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~g-ga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~-- 453 (543)
+..+. -.......+-.--|.|.....|-+.+.+-+. +.++++-+ -.++|...|-+....
T Consensus 1069 ------s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~I-----------c~r~~sg~~Pt~~y~D~ 1131 (1363)
T KOG3628|consen 1069 ------SSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFI-----------CLRSYSGPEPTTVYLDA 1131 (1363)
T ss_pred ------ccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHh-----------hhccccCCCCcceeech
Confidence 00000 0000000011112233333333222211110 11111100 012222222110000
Q ss_pred ------------cCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCC-hhhhhhhc--
Q 009114 454 ------------QLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKD-EIQTKEVI-- 518 (543)
Q Consensus 454 ------------~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~-~~~t~~~~-- 518 (543)
...+......-.|...+++++.|+++++..++.+++ .||||+++.+-+.+|+.- +|...+.|
T Consensus 1132 raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge---~GEIW~~S~hnA~~~~~~~d~~~~~~fn~ 1208 (1363)
T KOG3628|consen 1132 RALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGE---LGEIWVNSAHNASCSFTIGDELRSNHFNA 1208 (1363)
T ss_pred hhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCC---cceEEeccccccccccccCchhhhhhhhh
Confidence 000000111224888899999999999999888887 999999999999888863 11222222
Q ss_pred -------CCCCeeeccceEEEe
Q 009114 519 -------DEDGWFHTGDIGMWI 533 (543)
Q Consensus 519 -------~~~gw~~TGDig~~~ 533 (543)
+..+|.||||+|++.
T Consensus 1209 rl~~g~~~~~sy~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1209 RLSSGDLLGKSYARTGDLGFLR 1230 (1363)
T ss_pred hccccccccccceeeeeeeeee
Confidence 345699999999886
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-20 Score=191.25 Aligned_cols=221 Identities=17% Similarity=0.181 Sum_probs=156.5
Q ss_pred CCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEe
Q 009114 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFY 328 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~ 328 (543)
...++++.|.|||||||.||+|.+||.++......... ..++.++|+++...|..+..+... .+.+...|++++.
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~- 161 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP- 161 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc-
Confidence 34578899999999999999999999998765543332 247889999999988887655443 4556777887653
Q ss_pred cCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHH
Q 009114 329 QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDK 408 (543)
Q Consensus 329 ~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~ 408 (543)
.+.....++.|+.+++|+++++|..+..+.+.+... +..+
T Consensus 162 ~~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~-------------------------g~~~--------------- 201 (445)
T TIGR03335 162 EGKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAE-------------------------GIDP--------------- 201 (445)
T ss_pred CCchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHc-------------------------CCCc---------------
Confidence 344456788999999999999999888776532211 0000
Q ss_pred cCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCC--CCeEEEEeecCCCCCCC
Q 009114 409 LGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN--AACEIKLVDVPEMNYTS 486 (543)
Q Consensus 409 ~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~evkivd~~~~~~~~ 486 (543)
...++|.+++||++++++..+.+++.||+++++.||+||++. +..... ..|..+ +.+.+.|+|++++..++
T Consensus 202 ~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~------~~g~h~~~d~~~vEIvDp~~~~~vp 274 (445)
T TIGR03335 202 AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQA------VAGLHVPEDLVHLDVYDPRHQRFLP 274 (445)
T ss_pred ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecC------CCCccccCCceEEEEEcCCCCCCCc
Confidence 014799999999999999999999999999999999999852 222111 123333 45789999966666677
Q ss_pred CCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEe
Q 009114 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533 (543)
Q Consensus 487 ~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~ 533 (543)
.|+ .|||+++.-.-. .+++.+ .==-|+|||++++.
T Consensus 275 ~Ge---~GELvvT~L~~~--------~~r~~~-PliRYrtgD~~~~~ 309 (445)
T TIGR03335 275 DGE---CGRIVLTTLLKP--------GERCGS-LLINYDTEDTTVVI 309 (445)
T ss_pred CCC---ceEEEEEecCCC--------CccCCc-eEEEeecCceEEEe
Confidence 776 899999873210 000001 00148999999974
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=181.71 Aligned_cols=406 Identities=16% Similarity=0.116 Sum_probs=241.3
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..++.+.|.+.+..+|...+....+. ....+.....||++....++.+++.|...|...|+.|++++..+.++++..++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~ 113 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA 113 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence 46788889999999999999877643 22233445689999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCC----HHHHHHHHHhc-CccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 158 CSAYSFISVPLYDTLG----PDAVKYIVNHA-SVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~----~~~l~~il~~~-~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
.+++|..+++++|.++ ++.+..+.... ....-+........+ .+.... +...+.
T Consensus 114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~-----~~~~~~----------------~~~sv~ 172 (1032)
T KOG1178|consen 114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDI-----LLNSLF----------------PKLSVE 172 (1032)
T ss_pred hhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHH-----Hhhccc----------------cccchh
Confidence 9999999999999998 22111111000 000001110000000 000000 000000
Q ss_pred e--eeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCC-h-HH
Q 009114 233 I--LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP-L-AH 308 (543)
Q Consensus 233 ~--~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lp-l-~h 308 (543)
. -.|..+... .........-+|..++++||||+||.||||..+|..+.....+....+..+.++.+ .+.+ + +|
T Consensus 173 ~~~~~f~~~~~~--~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~ 249 (1032)
T KOG1178|consen 173 TIADSFQMVLHN--EDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFD 249 (1032)
T ss_pred hccchhhhhhcc--CCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecc
Confidence 0 011111111 00112223456778999999999999999999999999999988888888888765 2222 2 23
Q ss_pred HHHHHHHHHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 309 IYERANQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
..-.....+.++.|+.+.++. ..+..+.+.+++++++.+..+|++.+.+........... ..+
T Consensus 250 d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l--------~~~----- 316 (1032)
T KOG1178|consen 250 DTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLL--------EHA----- 316 (1032)
T ss_pred cchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhh--------hhh-----
Confidence 222223345566666665544 347889999999999999999999888765322110000 000
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCCCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 463 (543)
...+..++ . -+.|+....+|+|....+...+...+ ..-...-|+.|+..+.........
T Consensus 317 --~~~~dl~~-------------~-~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~---- 376 (1032)
T KOG1178|consen 317 --FSLSDLLT-------------K-RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSP---- 376 (1032)
T ss_pred --hhcccccc-------------c-chhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCc----
Confidence 00000000 0 04899999999999999998444433 222233388888765544432211
Q ss_pred CcCCCCCCeEEEEeecCCC---------CCCCCCCC---C----CCceEEEeCccchhhhcCChhhhhhhc-----CCCC
Q 009114 464 HVGSPNAACEIKLVDVPEM---------NYTSEDQP---C----PRGEICVRGPLIFKGYYKDEIQTKEVI-----DEDG 522 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~---------~~~~~~~p---~----~~GEi~v~g~~v~~gY~~~~~~t~~~~-----~~~g 522 (543)
.+.-+-+..+.++..-.. .+...+.+ + ..|+.+.-+..+..| ++.++.....+ ..+.
T Consensus 377 -s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r 454 (1032)
T KOG1178|consen 377 -SKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKAR 454 (1032)
T ss_pred -ccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhh
Confidence 111111111111110000 00001110 0 022233333444455 45555544433 2345
Q ss_pred eeeccceEEEecCCcEEEecC
Q 009114 523 WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 523 w~~TGDig~~~~~G~l~i~gR 543 (543)
.|+|||.|+..++|.+.|.||
T Consensus 455 ~y~tgD~gr~l~ng~l~~~GR 475 (1032)
T KOG1178|consen 455 IYRTGDNGRSLKNGGLEISGR 475 (1032)
T ss_pred cccccccceeecCCCEEEEEe
Confidence 899999999999999999998
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-16 Score=154.16 Aligned_cols=223 Identities=18% Similarity=0.146 Sum_probs=160.1
Q ss_pred CCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 009114 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl-~h~~~~~~~~~~l~~G~~i~~~ 328 (543)
...+++..|--||||||+|+-+.+|+..+......+.. ......+|++....-. .+..++....++--.|+++.-.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 44567777888999999999999999886554443333 3556677766443331 1222234455555567766654
Q ss_pred c-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHH
Q 009114 329 Q-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407 (543)
Q Consensus 329 ~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~ 407 (543)
+ ++...-++.++.++||++.++|+.+..|.+.+...-.. ++.
T Consensus 167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~-----------------------------~~~-------- 209 (438)
T COG1541 167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGID-----------------------------PDK-------- 209 (438)
T ss_pred CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCC-----------------------------hhh--------
Confidence 4 68999999999999999999999999998865443100 011
Q ss_pred HcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhcccc-ccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCC
Q 009114 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLI-SQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTS 486 (543)
Q Consensus 408 ~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~-~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~ 486 (543)
.++|.+++|+++++++..+.+...|||..++.||+||..++. ..+.. ... .--.-...-+.|+||.++++++
T Consensus 210 ---~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~--~~g--lhi~eD~~~~Ei~dP~t~e~l~ 282 (438)
T COG1541 210 ---LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTE--RNG--LHIWEDHFIFEIVDPETGEQLP 282 (438)
T ss_pred ---cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccc--ccC--CCcchhhceeeeecCCcCccCC
Confidence 489999999999999999999999999999999999986653 11111 111 1123357888899999999999
Q ss_pred CCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecC
Q 009114 487 EDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535 (543)
Q Consensus 487 ~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~ 535 (543)
+++ .|||.+..= |++.+ +==-|+|||++++.++
T Consensus 283 dge---~GelV~T~L------------~~~~~-PlIRYrtgDit~i~~~ 315 (438)
T COG1541 283 DGE---RGELVITTL------------TKEGM-PLIRYRTGDITVILSD 315 (438)
T ss_pred CCC---eeEEEEEec------------cccCc-ceEEEEcCCeeEeccc
Confidence 998 999999762 22222 1125999999999873
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-14 Score=149.68 Aligned_cols=404 Identities=15% Similarity=0.113 Sum_probs=264.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEccCC--hhHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS-GLIYHGISKGSCIGLYFVNR--PEWLI 153 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~g~~~gd~V~i~~~n~--~e~~i 153 (543)
....+..+++++-.+++...|.... |.++. ...+||..+..++.++|+ .|-+-|+.++|+|.++..-+ .|+++
T Consensus 92 a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i 167 (1363)
T KOG3628|consen 92 ALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI 167 (1363)
T ss_pred hhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence 4566777788887888888888776 77755 889999999999999999 55567999999999988765 89999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce-
Q 009114 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ- 232 (543)
Q Consensus 154 ~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~- 232 (543)
..++|...|++.+|+.+..+.+++..+++.+..++++...................|.+ .+......+
T Consensus 168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v-----------~~w~t~~~k~ 236 (1363)
T KOG3628|consen 168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAV-----------AWWKTNDFKG 236 (1363)
T ss_pred hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHH-----------Hhhhcccccc
Confidence 99999999999999999999999999999999999998876554443322111000100 011111111
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc--------------------Cc
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------------------GT 292 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~--------------------~~ 292 (543)
.+.+++ ...+...-. ..+|-||++++|+--||+.+|+ ++.+...+.. .+
T Consensus 237 ~~~~~k---------~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~ 305 (1363)
T KOG3628|consen 237 NYTKDK---------IKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVF 305 (1363)
T ss_pred eeehhh---------ccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcc
Confidence 111111 111111222 8899999999999999999998 5443332211 13
Q ss_pred ccCCCcEEEEeCChHHHHHHHH-HHHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhc
Q 009114 293 KFYPSDVYISYLPLAHIYERAN-QVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367 (543)
Q Consensus 293 ~~~~~d~~l~~lpl~h~~~~~~-~~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~ 367 (543)
.....++++-.+...-..|++. .+.++++|.+....+ ..+..+.+.+.++|.+++..--..+........+
T Consensus 306 ~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~---- 381 (1363)
T KOG3628|consen 306 PVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQE---- 381 (1363)
T ss_pred ccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccC----
Confidence 3445677777776666666666 667899998888766 3455677777789999888776666544321111
Q ss_pred cCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh----CCc-cccc
Q 009114 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF----GGR-VTEG 442 (543)
Q Consensus 368 ~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~----~~~-i~~~ 442 (543)
++.. .+-|.|-+....+++|.+++.=..+..+..+.....+ |+. +...
T Consensus 382 ------------------------~p~a---~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~ 434 (1363)
T KOG3628|consen 382 ------------------------DPKA---TLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVV 434 (1363)
T ss_pred ------------------------Cccc---ccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCccee
Confidence 0000 0112333333447999999998888888877655543 221 1111
Q ss_pred -----------------cChhhhccccccCCCCC------------------------------CCCCCcCCCCCC-eEE
Q 009114 443 -----------------YGMTETSCLISQLDEGD------------------------------NLSGHVGSPNAA-CEI 474 (543)
Q Consensus 443 -----------------YG~TE~~~~~~~~~~~~------------------------------~~~~~vG~p~~~-~ev 474 (543)
-+++|.+...-..+..+ .....+|...|+ +.+
T Consensus 435 ~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~ 514 (1363)
T KOG3628|consen 435 DFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATL 514 (1363)
T ss_pred echhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEE
Confidence 12244433322222100 001235555554 556
Q ss_pred EEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC------------CCCeeeccceEEEecCCcEEEe
Q 009114 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------------EDGWFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 475 kivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~------------~~gw~~TGDig~~~~~G~l~i~ 541 (543)
.+++++..+.+..++ .|||||.+++..++||.-+..|+..|. ...|.|||=+|++.+ |.++++
T Consensus 515 ~vv~~~t~~LC~~~e---VGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~-gki~vl 589 (1363)
T KOG3628|consen 515 AVVNPDTNQLCKTDE---VGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHN-GKIYVL 589 (1363)
T ss_pred EEeCCCcccccccCc---ceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeC-CeEEEE
Confidence 677755556666665 999999999999999988888887771 124899999999975 555554
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-10 Score=117.39 Aligned_cols=147 Identities=16% Similarity=0.224 Sum_probs=100.1
Q ss_pred EEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCC-hHHHHHHHHHHHHHHhCcEEEEec--CCh
Q 009114 259 ATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLP-LAHIYERANQVMTVYSGVAVGFYQ--GDN 332 (543)
Q Consensus 259 ~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lp-l~h~~~~~~~~~~l~~G~~i~~~~--~~~ 332 (543)
..+..||||||.|-.+..+............. ..++..++++..++. -.+.+..+. -....+-+++ .+.
T Consensus 102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~~~-----~~~~~~~~~~l~~~~ 176 (430)
T TIGR02304 102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQSVN-----NRWISLDFFDLLAPF 176 (430)
T ss_pred EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHHHH-----hccceeeecCCCcCH
Confidence 45677999999999999998865433222211 123445555444421 113332111 0111133333 578
Q ss_pred HhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCc
Q 009114 333 MKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGR 412 (543)
Q Consensus 333 ~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~ 412 (543)
..+++.|.+++|+++.+.|+.+..|.+.+.+... .-+
T Consensus 177 ~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l-------------------------------------------~~~ 213 (430)
T TIGR02304 177 QAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL-------------------------------------------TIK 213 (430)
T ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC-------------------------------------------CCC
Confidence 8899999999999999999999998875332100 026
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhcccccc
Q 009114 413 VRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 413 lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 454 (543)
++.|+++|++++++..+.+++.|||+|++.||+|| +.+++.
T Consensus 214 ~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~e 254 (430)
T TIGR02304 214 PKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLAST 254 (430)
T ss_pred ceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEe
Confidence 89999999999999999999999999999999999 444433
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-07 Score=93.15 Aligned_cols=226 Identities=15% Similarity=0.162 Sum_probs=132.6
Q ss_pred CCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC----cccCCC-cEEEEeCChHH----HHHHHH-HHHHHHhCc
Q 009114 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG----TKFYPS-DVYISYLPLAH----IYERAN-QVMTVYSGV 323 (543)
Q Consensus 254 ~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~----~~~~~~-d~~l~~lpl~h----~~~~~~-~~~~l~~G~ 323 (543)
.++++..++-||||||.|--+.+.+..+......+... ...... -.++...|-.. +..... .+.....+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 35667778889999999866666655554443322221 222222 22333334321 111111 222334444
Q ss_pred EEEEec--CChHhHHHHHH----hhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 009114 324 AVGFYQ--GDNMKLMDDMA----ALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (543)
Q Consensus 324 ~i~~~~--~~~~~l~~~i~----~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (543)
.-.+-. .|...+.+.+. ..+|..+++.|.++-.+...+.+...+
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~------------------------------ 216 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR------------------------------ 216 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc------------------------------
Confidence 422211 35666666554 567899999999777665543222110
Q ss_pred hHHhHHHHHHHcCCcEEEEEEcC------CCCC-HHHHHHHHHhhCC----ccccccChhhhccccccCCCCCCCCCCcC
Q 009114 398 DRLVFNKIKDKLGGRVRFMGSGA------SPLS-PDVLDFLKICFGG----RVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (543)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gg------a~l~-~~~~~~~~~~~~~----~i~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (543)
-.+.+..++|-+|| +.++ .+..+.+++.||+ ++++.|||||.....+.... ++.
T Consensus 217 ---------~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----~~~- 281 (365)
T PF04443_consen 217 ---------FRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH-----GHF- 281 (365)
T ss_pred ---------ccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC-----Ccc-
Confidence 01113566777776 4575 5677788888998 58999999997654443211 111
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecC--------CcE
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG--------GRL 538 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~--------G~l 538 (543)
+.|.- |.|+|+.+..+++.|+ +|=|-+-.+... . .-+..-|.|+|.+..+ .++
T Consensus 282 -~~p~w-V~iRDp~tl~~~~~Ge---~Gli~vidl~~~-s-------------~p~~IlTeDlGvl~~~~~c~cr~g~~f 342 (365)
T PF04443_consen 282 -HVPPW-VIIRDPETLEPLPPGE---TGLIQVIDLANT-S-------------YPGFILTEDLGVLHGDDDCGCRKGKYF 342 (365)
T ss_pred -cCCCe-EEEECCCCCcCCCCCC---eeEEEEEccccc-C-------------CCcEEEEcceeeecCCCCCCCccCCEE
Confidence 22222 7788988888888887 788888765431 1 2345779999988765 279
Q ss_pred EEecC
Q 009114 539 KIIDR 543 (543)
Q Consensus 539 ~i~gR 543 (543)
.|+||
T Consensus 343 ~vlGR 347 (365)
T PF04443_consen 343 EVLGR 347 (365)
T ss_pred EEEeC
Confidence 99998
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00022 Score=72.13 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=22.8
Q ss_pred CCCeeeccceEEE-ecCCcEEEecC
Q 009114 520 EDGWFHTGDIGMW-IPGGRLKIIDR 543 (543)
Q Consensus 520 ~~gw~~TGDig~~-~~~G~l~i~gR 543 (543)
.||||+|||+|++ |+||+|+|.||
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR 231 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDG 231 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEec
Confidence 6899999999998 69999999998
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.21 Score=53.53 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEecCCCCCC-ccEEEecHHHHHH
Q 009114 252 PPKPDDVATICYTSGTTGT-PKGAVLSHGNLIA 283 (543)
Q Consensus 252 ~~~~~d~~~i~~TSGTTG~-PKgv~~th~~l~~ 283 (543)
...++.+.++..||||||. ||-+..|...+..
T Consensus 76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 4556778899999999999 9999999887644
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.44 Score=51.55 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=25.2
Q ss_pred CCCCCeEEEEecCCCC-CCccEEEecHHHHH
Q 009114 253 PKPDDVATICYTSGTT-GTPKGAVLSHGNLI 282 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTT-G~PKgv~~th~~l~ 282 (543)
..++.+.++.-||||| |.+|-+.+|...+-
T Consensus 97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~ 127 (597)
T PLN02249 97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID 127 (597)
T ss_pred eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence 4567788899999999 89999999986553
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.9 Score=46.59 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCCCeEEEEecCCCCC-CccEEEecHHHHH
Q 009114 254 KPDDVATICYTSGTTG-TPKGAVLSHGNLI 282 (543)
Q Consensus 254 ~~~d~~~i~~TSGTTG-~PKgv~~th~~l~ 282 (543)
.++.+.++.-|||||| .+|-+.+|+..+-
T Consensus 87 t~~pi~~F~~SSGTT~g~~K~IP~t~e~l~ 116 (606)
T PLN02247 87 SAQPITELLTSSGTSGGQPKLMPSTAEELD 116 (606)
T ss_pred CCCCcceeeccCCCCCCceeEeeccHHHHH
Confidence 4667788999999995 8999999987653
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=93.70 E-value=10 Score=41.02 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=25.2
Q ss_pred CCCCCeEEEEecCCCCC-CccEEEecHHHHHH
Q 009114 253 PKPDDVATICYTSGTTG-TPKGAVLSHGNLIA 283 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTTG-~PKgv~~th~~l~~ 283 (543)
..++.+-++.-|||||| .+|-+.+|+..+-.
T Consensus 98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred cCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 34666778899999997 59999999987654
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.49 E-value=1 Score=46.28 Aligned_cols=106 Identities=10% Similarity=0.012 Sum_probs=80.3
Q ss_pred eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccE
Q 009114 111 YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188 (543)
Q Consensus 111 ~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~ 188 (543)
..-+|..++..-+..+|+.|...|..+||+|.++..-+ ..-+-..+|+.++|++++|+.+. .-+....++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence 44589999999999999999999999999776665411 11166778999999999999883 4567788999999999
Q ss_pred EEecCcCHHHHHhhccCC------CCeeEEEEeCC
Q 009114 189 VFCVPQTLNSLLSCLSEV------PTVRLIVVIGG 217 (543)
Q Consensus 189 vi~~~~~~~~l~~~~~~~------~~l~~ii~~~~ 217 (543)
|.+.++.+-.+.+...+. -++|.++.-.+
T Consensus 186 I~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE 220 (438)
T COG1541 186 IAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAE 220 (438)
T ss_pred EEEChHHHHHHHHHHHHcCCChhhcceeEEEEecc
Confidence 999998765555444332 34666665433
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=86.02 E-value=7.6 Score=40.39 Aligned_cols=112 Identities=14% Similarity=0.105 Sum_probs=77.0
Q ss_pred cCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCh--hHHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 009114 105 DGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP--EWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (543)
Q Consensus 105 ~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~--e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~i 180 (543)
.|.+|.. ..+|..++...+..++..+...|+++||++........ ..+...+++...|+.++++.+.. .+.+...
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 4555543 34577777666667777787889999998877655432 22234567888999999887654 5778899
Q ss_pred HHhcCccEEEecCcCHHHHHhhccC------CCCeeEEEEeCC
Q 009114 181 VNHASVQAVFCVPQTLNSLLSCLSE------VPTVRLIVVIGG 217 (543)
Q Consensus 181 l~~~~~~~vi~~~~~~~~l~~~~~~------~~~l~~ii~~~~ 217 (543)
|++.+++++++.++.+..+.+...+ ...++.+++-++
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge 205 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAE 205 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCC
Confidence 9999999999998877665543211 135676665543
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=84.40 E-value=10 Score=39.77 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=74.9
Q ss_pred cCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChh--HHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 009114 105 DGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (543)
Q Consensus 105 ~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e--~~i~~lA~~~~G~~~vpl~~~l~~~~l~~i 180 (543)
.|.+|. ...+|.+++...+...+..+...|+.+||++.++.+.... .....+++...|+.++|... .+....+
T Consensus 95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~ 171 (445)
T TIGR03335 95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI 171 (445)
T ss_pred CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence 444443 3457889998888888888888899999999888765532 23445788899998877653 2345677
Q ss_pred HHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 181 VNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 181 l~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
+++.++.++++....+-.+.+... ....++.+++-++
T Consensus 172 i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE 214 (445)
T TIGR03335 172 IESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGE 214 (445)
T ss_pred HHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCC
Confidence 899999999887765444332211 1245776666543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 543 | ||||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-23 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 1e-21 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-21 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-21 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-21 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 1e-19 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 1e-19 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 1e-19 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 2e-19 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 2e-19 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-19 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 2e-19 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 8e-19 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 3e-18 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 4e-17 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 8e-17 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 4e-12 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 9e-11 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 2e-10 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 3e-10 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-09 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 6e-09 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 3e-08 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 3e-08 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 3e-08 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-07 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 2e-07 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 1e-06 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 5e-05 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 1e-04 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 6e-04 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 8e-04 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 9e-04 |
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 251 bits (644), Expect = 5e-77
Identities = 102/488 (20%), Positives = 179/488 (36%), Gaps = 75/488 (15%)
Query: 70 SRFPDHP-EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGS 128
P +P E G+ + ++ + LG + G +Y E +G
Sbjct: 13 GPKPFYPIEEGSAGTQLRKYMERYAK---LGAIAFTNAVTGVD--YSYAEYLEKSCCLGK 67
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
L +G+ I L N E+ I A P + + + + +
Sbjct: 68 ALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTI 127
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VF + L+ +++ V T++ IV++ D ++ + + S+ +
Sbjct: 128 VFSSKKGLDKVITVQKTVTTIKTIVIL---DSKVDYRGYQCLDTFIKRNTPPGFQASSFK 184
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA---GATLGTKFYPSDVYISYLP 305
+ + VA I +SG+TG PKG L+H N++ + G + P ++ +P
Sbjct: 185 TVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLYNR 356
H + M G + ++ D + T VP L+
Sbjct: 245 FHHGF-----GMFT---TLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296
Query: 357 IYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM 416
+ + LS + +
Sbjct: 297 L--------------------NKSELLNKYDLS----------------------NLVEI 314
Query: 417 GSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475
SG +PLS +V + + F V +GYG+TET+ I EGD+ G G + K
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAK 374
Query: 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG 535
++D+ ++ GE+CV+GP++ KGY + TKE+IDE+GW HTGDIG +
Sbjct: 375 VIDLDTKKSLGPNRR---GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431
Query: 536 GRLKIIDR 543
I+DR
Sbjct: 432 KHFFIVDR 439
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 8e-77
Identities = 100/490 (20%), Positives = 168/490 (34%), Gaps = 78/490 (15%)
Query: 70 SRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRV-RVDGTVGEYKWMTYGEAGTARTEVGS 128
P +P T + + Y + + D + +TY E +
Sbjct: 10 GPAPFYPLEDGTAGEQLH--KAMKRYALVPGTIAFTDAHIEVN--ITYAEYFEMSVRLAE 65
Query: 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQA 188
+ +G++ I + N ++ + P D + +N +
Sbjct: 66 AMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 125
Query: 189 VFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQ 248
VF + L +L+ ++P ++ I+++ D + +T +
Sbjct: 126 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD---YQGFQSMYTFVTSHLPPGFNEYDFV 182
Query: 249 PFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA---GATLGTKFYPSDVYISYLP 305
P S + +A I +SG+TG PKG L H + G + P +S +P
Sbjct: 183 PESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242
Query: 306 LAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLYNR 356
H + M G + LM + + VP L++
Sbjct: 243 FHHGF-----GMFT---TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294
Query: 357 IYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFM 416
A + LS + +
Sbjct: 295 F--------------------AKSTLIDKYDLS----------------------NLHEI 312
Query: 417 GSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475
SG +PLS +V + + F + +GYG+TET+ I EGD+ G VG E K
Sbjct: 313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAK 372
Query: 476 LVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWI 533
+VD + T + RGE+CVRGP+I GY + T +ID+DGW H+GDI W
Sbjct: 373 VVD-LD---TGKTLG-VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427
Query: 534 PGGRLKIIDR 543
I+DR
Sbjct: 428 EDEHFFIVDR 437
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 247 bits (634), Expect = 6e-76
Identities = 107/440 (24%), Positives = 162/440 (36%), Gaps = 81/440 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E V + L+ G+ G + E L++ A + +PL
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ Y + A + V C P + + + ++V + G
Sbjct: 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
+ ++ + DD+A I YTSGTTG KGA+LSH NL ++ +
Sbjct: 135 -SLTDAAAGASEAFAT-IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLM---DDMAAL----RPTV 346
F P DV I LP+ H + + V V + +M + D L R TV
Sbjct: 193 FTPDDVLIHALPIYHTHG-----LFV--ASNVTLFARGSMIFLPKFDPDKILDLMARATV 245
Query: 347 FCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIK 406
VP Y R+ SP +
Sbjct: 246 LMGVPTFYTRLLQ----------------------------------SPRLTKETT---- 267
Query: 407 DKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466
G +R SG++PL D G V E YGMTET+ S +GD + G VG
Sbjct: 268 ----GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVG 323
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGW 523
++ D PE + PR G I V+GP +FKGY++ +TK +DG+
Sbjct: 324 PALPGVSARVTD-PET-----GKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGF 377
Query: 524 FHTGDIGMWIPGGRLKIIDR 543
F TGD+G G + I+ R
Sbjct: 378 FITGDLGKIDERGYVHILGR 397
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 5e-75
Identities = 121/508 (23%), Positives = 182/508 (35%), Gaps = 103/508 (20%)
Query: 57 NVYRSSRSPLKLVSRFPDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTY 116
++RS + + P+ H + + L ++G G+ TY
Sbjct: 7 FIFRSKLPDIYI-------PKNLPLHSYVLENLSNHSSKPCL-----INGANGDV--YTY 52
Query: 117 GEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDA 176
+ V SGL GI +G I L+ + PE+++ S I P
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 177 VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236
+ + + + + E V+++ V D L +
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCVDSAPDG------------CLHF 159
Query: 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA----GATLGT 292
S L + PDDV + Y+SGTTG PKG +L+H LI SVA G
Sbjct: 160 SELTQADENEAPQV-DISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218
Query: 293 KFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------R 343
F+ DV + LP+ HIY + + G G + +M ++ +L +
Sbjct: 219 YFHSEDVILCVLPMFHIY-----ALNS--IMLCGLRVGAPILIMPKFEIGSLLGLIEKYK 271
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
++ VP + I A + LS
Sbjct: 272 VSIAPVVPPVMMSI--------------------AKSPDLDKHDLS-------------- 297
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETS-----CLISQLDE 457
+R + SG +PL ++ D R+ +GYGMTE CL +
Sbjct: 298 --------SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEP 349
Query: 458 GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTK 515
D G G+ E+K+VD PE T P GEIC+RG I KGY D T
Sbjct: 350 FDIKPGACGTVVRNAEMKIVD-PE---TGASLP-RNQPGEICIRGDQIMKGYLNDPEATS 404
Query: 516 EVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
ID++GW HTGDIG L I+DR
Sbjct: 405 RTIDKEGWLHTGDIGYIDDDDELFIVDR 432
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 1e-74
Identities = 83/438 (18%), Positives = 148/438 (33%), Gaps = 78/438 (17%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + L GI+KG + L N E+ + + + ++VP+ L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
V +I++ + + V + + + ++ + G D
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS------------- 150
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
+ L + +P DD I YTSGTTG PKG V +H ++ ++ +
Sbjct: 151 --LAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207
Query: 294 FYPSDVYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVFCS 349
D + LP+ H+ + + GV + F D K+ + R + +
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQF---DATKVWSLIVEERVCIGGA 264
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
VP + M P + L
Sbjct: 265 VPAIL------------------------------NFMRQ----VPEFAELDA------- 283
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGS 467
R+ +G +P+ ++ V +GY +TE+ + L D L G G
Sbjct: 284 -PDFRYFITGGAPMPEALIKIYAA-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGR 341
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPR--GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFH 525
++ + + GE+ ++ ++ K Y+ T++ D +GWF
Sbjct: 342 ATMFTDVAVRG-------DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFR 393
Query: 526 TGDIGMWIPGGRLKIIDR 543
TGDIG G L I DR
Sbjct: 394 TGDIGEIDDEGYLYIKDR 411
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 3e-74
Identities = 96/503 (19%), Positives = 179/503 (35%), Gaps = 103/503 (20%)
Query: 70 SRFPD--HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWM----TYGEAGTAR 123
FP +P+I + D A + F + + + + E
Sbjct: 9 IGFPSLYYPKI-SLADRIDAAAEKFGEKTAI-----ISAEPKFPSEFPESMNFLEICEVT 62
Query: 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNH 183
++ SG+ G+ KG +G+ N ++++ +A + VP+ +++I+N
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILND 122
Query: 184 ASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQG 243
+ + + L + V + V+GG ++ + S ++ G
Sbjct: 123 SEATTLVVHSMLYENFKPVLEKTG-VERVFVVGG--------------EVNSLSEVMDSG 167
Query: 244 RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISY 303
+ + +DVA I YT GTTG PKG +L+H NL A+ + T D +
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGC 227
Query: 304 LPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMD--DMAAL-------RPTVFCSVPRLY 354
+P+ H E + V + G+ +M + L + T +VP
Sbjct: 228 MPMFHSAE-----FGL---VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPAL 279
Query: 355 NRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414
N ++ ++ + +
Sbjct: 280 N------------------------------VLV--NTLESSNKTYDWSYL--------K 299
Query: 415 FMGSGASPLSPDVLDFLKICFGGR-------VTEGYGMTETSCLIS-QLDEGDNLSGHVG 466
+GA P++P +++ L + + +GMTE +++ + S G
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQG 359
Query: 467 SPNAACEIKLVDVPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVI----DE 520
P + E+K++ E + GEI +RGP IFKGY+K E + +E
Sbjct: 360 VPMSDIELKVIS-LE---DGRELG-VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG 414
Query: 521 DGWFHTGDIGMWIPGGRLKIIDR 543
+F TGD+G G L DR
Sbjct: 415 RKFFRTGDVGFIDEEGFLHFQDR 437
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 238 bits (611), Expect = 2e-72
Identities = 89/439 (20%), Positives = 155/439 (35%), Gaps = 83/439 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+T+ + + SGL+ G+ G + + N E + + A + I +P+ L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
D + +++ + V + + L + V+ IG
Sbjct: 92 ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAP--------- 142
Query: 234 LTYSNLLSQGRSNLQPFSPPK--PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
+ +L S PFS P+ D I +T+ G P+GA++S GNL+ + +
Sbjct: 143 --FKDLASDT-----PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAV----GFYQGDNMKLMDDMAALRPTVF 347
+ +DV + LPL H+ + +G A F D + D+ A + TV
Sbjct: 196 WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF---DPAQAARDIEAHKVTVM 252
Query: 348 CSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKD 407
+ +L +L
Sbjct: 253 AEFAPML------------------------------GNIL----DQAAPAQL------- 271
Query: 408 KLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467
+R + +P + + + C +G +ETS L + D G
Sbjct: 272 ---ASLRAVTGLDTPETIERFE--ATCPNATFWATFGQSETSGLSTFAPYRDRP-KSAGR 325
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWF 524
P + +VD +ED+P P GEI +RGP +FKGY+ + T+ +GW
Sbjct: 326 PLFWRTVAVVD-------AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWH 377
Query: 525 HTGDIGMWIPGGRLKIIDR 543
HTGD+G + G L R
Sbjct: 378 HTGDMGRFDADGYLFYAGR 396
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 232 bits (595), Expect = 3e-70
Identities = 80/436 (18%), Positives = 149/436 (34%), Gaps = 72/436 (16%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TY + + L + S +GLY N + +I+ HAC + + L
Sbjct: 27 YTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLT 83
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSL--LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231
P+ + + VQ +FC + L ++ + G+ D + T
Sbjct: 84 PNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDT-- 141
Query: 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG 291
+ ++ + + + DD+A+I +TSGTTG K + N AS G
Sbjct: 142 ---SNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES 198
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSV 350
F ++S LP+ HI + + V G V + +++ + R T V
Sbjct: 199 LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLV 258
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P+ ++ + +
Sbjct: 259 PQTL------------------------------NWLMQ----QGLHEPY---------- 274
Query: 411 GRVRFMGSGASPLSPDVLD-FLKICFGGRVTEGYGMTETSCLISQLDEGDNLS--GHVGS 467
++ + G + LS +++ L+ + + +GMTET + VG
Sbjct: 275 -NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGM 331
Query: 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTG 527
P+A ++K+ + GE+ ++G + GY E+G+F+TG
Sbjct: 332 PSANVDVKIKN---------PNKEGHGELMIKGANVMNGYLYPT-DLTGTF-ENGYFNTG 380
Query: 528 DIGMWIPGGRLKIIDR 543
DI G + I DR
Sbjct: 381 DIAEIDHEGYVMIYDR 396
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 2e-69
Identities = 94/432 (21%), Positives = 152/432 (35%), Gaps = 79/432 (18%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+TY E A +G I + ++ E + A +VPL G
Sbjct: 49 LTYAELAAA-----AGATAGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ +I++ ++ V P +E+P + +D +
Sbjct: 104 DKELAHILSDSAPSLVLAPPD---------AELPPALGALERVDVDVRARGAV------- 147
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTK 293
P D A + YTSGTTG PKGAV+ L ++ +
Sbjct: 148 ---------------PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192
Query: 294 FYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG-DNMKLMDDMAALRPTVFCSVP 351
+ DV + LPL H++ ++ + G +V ++ T+ VP
Sbjct: 193 WTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATMLFGVP 251
Query: 352 RLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGG 411
+Y+RI + L + L
Sbjct: 252 TMYHRIAE----TLPADPELAKAL-----------------------------------A 272
Query: 412 RVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471
R + SG++ L + + G RV E YGMTET S +G+ +G VG P
Sbjct: 273 GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPG 332
Query: 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
E++LV+ + + GEI VRGP +F Y T EDG+F TGD+ +
Sbjct: 333 VELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAV 391
Query: 532 WIPGGRLKIIDR 543
P G ++I+ R
Sbjct: 392 RDPDGYVRIVGR 403
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 7e-68
Identities = 118/547 (21%), Positives = 208/547 (38%), Gaps = 98/547 (17%)
Query: 25 SSQLRHNPTAGEYALEQGYSVVLPEKLDTGKWNVYRSSRSPLKLV--SRFPD--HPEIGT 80
SS H+ ++G + + P++ + +S+ + ++ S+ PD P +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNHLS 62
Query: 81 THDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSC 140
HD + + F L ++G G TY + ++ + G+++
Sbjct: 63 LHDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDV 115
Query: 141 IGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLL 200
+ L N PE+++ A S + P + ++ + + + ++ +
Sbjct: 116 VMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIK 175
Query: 201 SCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK--PDDV 258
++ V ++ + IP L ++ L + + PDDV
Sbjct: 176 PLQNDDG-VVIVCIDDNESVPIPE-------GCLRFTELTQSTTEASEVIDSVEISPDDV 227
Query: 259 ATICYTSGTTGTPKGAVLSHGNLIASVA----GATLGTKFYPSDVYISYLPLAHIYERAN 314
+ Y+SGTTG PKG +L+H L+ SVA G F+ DV + LP+ HIY
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIY---- 283
Query: 315 QVMTVYSGVAVGFYQGDNMKLM-----DDMAAL----RPTVFCSVPRLYNRIYAGITSAV 365
+ + G G + +M + + L + TV VP
Sbjct: 284 -ALNSI--MLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP-------------- 326
Query: 366 RTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG-GRVRFMGSGASPLS 424
P+ + + +K +R + SGA+PL
Sbjct: 327 -----------------------------PIVLAIAKSSETEKYDLSSIRVVKSGAAPLG 357
Query: 425 PDVLD-FLKICFGGRVTEGYGMTETSCLIS-----QLDEGDNLSGHVGSPNAACEIKLVD 478
++ D ++ +GYGMTE +++ + SG G+ E+K+VD
Sbjct: 358 KELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD 417
Query: 479 VPEMNYTSEDQPCP--RGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
P+ T + GEIC+RG I KGY + T E ID+DGW HTGDIG+
Sbjct: 418 -PD---TGDSLS-RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDD 472
Query: 537 RLKIIDR 543
L I+DR
Sbjct: 473 ELFIVDR 479
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 8e-68
Identities = 84/437 (19%), Positives = 133/437 (30%), Gaps = 65/437 (14%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
TYGE S L G+ I L ++ + + V L
Sbjct: 49 TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
P Y++ H+ +AV + ++ L +++ + P L
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRL-------A 161
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGT 292
+ L+ + + DD+A Y+SG+TG PKG V +H NL + A
Sbjct: 162 PLFEELIDAAAPAAKA-AATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 293 KFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG--DNMKLMDDMAALRPTVFCS 349
+DV S L Y N + + G + + RPTVF
Sbjct: 221 GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYG 280
Query: 350 VPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKL 409
VP LY ML N D
Sbjct: 281 VPTLYA------------------------------NMLVSPNLPARADV---------- 300
Query: 410 GGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469
+R S L ++ + FG + +G G TE + G G G P
Sbjct: 301 --AIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPV 358
Query: 470 AACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHT 526
EI+L D P G++ ++GP Y+ + +++ W +
Sbjct: 359 PGYEIELRD-------EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRS 410
Query: 527 GDIGMWIPGGRLKIIDR 543
GD +P G R
Sbjct: 411 GDKYCRLPNGCYVYAGR 427
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-67
Identities = 75/444 (16%), Positives = 135/444 (30%), Gaps = 87/444 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+T+ E V + L G+ + + N + +I A + L L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233
+ ++ + A + + + + I+ +G D P + G I
Sbjct: 90 SAELAELIKRGEMTAAVIAVGR--QVADAIFQSGSGARIIFLG--DLVRDGEPYSYGPPI 145
Query: 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI--ASVAGATLG 291
+P A I YTSGTTG PK A++ +G
Sbjct: 146 ---------------EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG 190
Query: 292 TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVG--------FYQGDNMKLMDDMAALR 343
+ +V + +PL H+ + + +A+ F + + + +
Sbjct: 191 LRHGRHNVVLGLMPLYHVVG---FFAVLVAALALDGTYVVVEEF---RPVDALQLVQQEQ 244
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
T + P + L AA +A L
Sbjct: 245 VTSLFATPTHLD------------------ALAAAAAHAGSSLKLD-------------- 272
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
+R + + + VL+ + G YG TE + G
Sbjct: 273 --------SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---G 321
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGP-LIFKGYYKDEIQTKEVID 519
+P E+++V D+ GE+ V F GY T E +
Sbjct: 322 TEMAPGFFSEVRIVR-IG---GGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377
Query: 520 EDGWFHTGDIGMWIPGGRLKIIDR 543
DGW+ T D+ +W P G ++I+ R
Sbjct: 378 -DGWYRTSDVAVWTPEGTVRILGR 400
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 1e-64
Identities = 80/449 (17%), Positives = 144/449 (32%), Gaps = 86/449 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E A + L GI G + N E I A V +
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + + Q L + ++E ++R++ ++ +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-------- 162
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+ ++ + +P D+VA + GTTGTPK +H + SV +
Sbjct: 163 -----HNLQDAINHPAEDFTA-TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
+F Y+ +P AH Y M+ G F G + L D +
Sbjct: 217 VEICQFTQQTRYLCAIPAAHNY-----AMSS-PGSLGVFLAGGTVVLAADPSATLCFPLI 270
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ V VP + A + +A L+
Sbjct: 271 EKHQVNVTALVPPAVSL------------------WLQALIEGESRAQLA---------- 302
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD 459
++ + G + LS + + G ++ + +GM E ++LD+
Sbjct: 303 ------------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350
Query: 460 NL-SGHVGSPNA-ACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
G P E+ + D E P P+ G + RGP F+GYYK
Sbjct: 351 EKIIHTQGYPMCPDDEVWVADA-------EGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
D +G++ +GD+ P G + + R
Sbjct: 404 ASAFDANGFYCSGDLISIDPEGYITVQGR 432
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 2e-63
Identities = 70/449 (15%), Positives = 142/449 (31%), Gaps = 86/449 (19%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
++Y E T + + L G+ KG + N E+ IV A + + +
Sbjct: 56 LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ + + + Q + S + +I+++ L
Sbjct: 116 QYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLL--- 172
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
+ + FS D+VA + G+TGTPK +H + SV +
Sbjct: 173 ---------DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRAS 223
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
+ + LP H + +++ G + G + + + +
Sbjct: 224 AEICGLNSNTRLLCALPAPHNF-----MLSSP-GALGVLHAGGCVVMAPNPEPLNCFSII 277
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ + VP L +
Sbjct: 278 QRHQVNMASLVPSAV------------------------------IMWLE----KAAQYK 303
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL-DEG 458
++ + G + + + ++ + +GM E ++L D
Sbjct: 304 DQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSD 355
Query: 459 DNLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
+ + G P ++ EIK+VD + + P G + RGP F GYY+
Sbjct: 356 EQIFTTQGRPISSDDEIKIVD-------EQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+V DED ++++GD+ P G L+++ R
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGR 437
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 3e-63
Identities = 84/449 (18%), Positives = 144/449 (32%), Gaps = 90/449 (20%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
+Y E T + +G GI + + + N E+ V A + V +
Sbjct: 51 WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 174 PDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPIT 228
+ Y A A S++PT++ I+V G ++ +P
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLP----- 165
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
L + K DVA + + G+TG K +H + I S+ +
Sbjct: 166 -----------LEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRS 214
Query: 289 TLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDD---------M 339
S VY++ LP+AH Y ++ GV Y G + L +
Sbjct: 215 VEVCWLDHSTVYLAALPMAHNY-----PLSSP-GVLGVLYAGGRVVLSPSPSPDDAFPLI 268
Query: 340 AALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDR 399
+ T+ VP L + + R
Sbjct: 269 EREKVTITALVPPLA------------------------------MVWMD----AASSRR 294
Query: 400 LVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQL-DEG 458
++ + G + S + +K FG + + +GM E ++L D
Sbjct: 295 DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPE 346
Query: 459 DNLSGHVGSP-NAACEIKLVDVPEMNYTSEDQPCPR---GEICVRGPLIFKGYYKDEIQT 514
+ + G P + E ++ D D+ G + RGP +GYYK E
Sbjct: 347 EIIVNTQGKPMSPYDESRVWD-------DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHN 399
Query: 515 KEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
EDG++ TGDI G + + R
Sbjct: 400 AASFTEDGFYRTGDIVRLTRDGYIVVEGR 428
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-48
Identities = 108/489 (22%), Positives = 166/489 (33%), Gaps = 113/489 (23%)
Query: 87 RAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTE-VGSGLIYHGISKGSCIGLYF 145
RA F V GE TY E R + GL G+ G +
Sbjct: 26 RAAALFGR-----KEVVSRLHTGEVHRTTYAEVY-QRARRLMGGLRALGVGVGDRVATLG 79
Query: 146 VNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSE 205
N L A + L P + YI+NHA + + P L + + E
Sbjct: 80 FNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE 139
Query: 206 VPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPD----DVATI 261
+ TV+ VV+ + L Y L + +
Sbjct: 140 LKTVQHFVVMD--EKAPEGY--------LAYEEALGEE--------ADPVRVPERAACGM 181
Query: 262 CYTSGTTGTPKGAVLSH-GNLIASVAGAT-LGTKFYPSDVYISYLPLAHIYERANQVMTV 319
YT+GTTG PKG V SH ++ S+A + GT DV + +P+ H N
Sbjct: 182 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH----VNAWCLP 237
Query: 320 YSGVAVG--------FYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGL 371
Y+ VG + L++ T VP ++ + + ++G
Sbjct: 238 YAATLVGAKQVLPGPRLDPAS--LVELFDGEGVTFTAGVPT----VWLALADYLESTGH- 290
Query: 372 RERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLD-F 430
+L R + G S ++ F
Sbjct: 291 ------------------------------------RLKTLRRLV-VGGSAAPRSLIARF 313
Query: 431 LKICFGGRVTEGYGMTETSCLISQ-----------LDEGDNLSGHVGSPNAACEIKLVDV 479
+ G V +GYG+TETS ++ Q +E L G P +++ D
Sbjct: 314 ER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD- 370
Query: 480 PEMNYTSEDQPCPR-----GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP 534
E P P+ GE+ ++GP I GYY +E T+ + DG+F TGDI +W
Sbjct: 371 EEGR------PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424
Query: 535 GGRLKIIDR 543
G ++I DR
Sbjct: 425 EGYVEIKDR 433
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 3e-41
Identities = 71/437 (16%), Positives = 139/437 (31%), Gaps = 75/437 (17%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
G+ + E + + L G+ +G + + PEW +V C I +P
Sbjct: 69 GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128
Query: 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227
+ + Y + + +A+ + + + + SE P++R+ +++
Sbjct: 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCD------ 182
Query: 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG 287
L + LL S + + I +TSGT+G PK A S+ +L
Sbjct: 183 ----GWLNFKKLL-NEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKM 237
Query: 288 ATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQGDNM---KLMDDMAALR 343
T SD+ + I +M G + ++ +++
Sbjct: 238 DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYP 297
Query: 344 PTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFN 403
P +Y R+ Q LS
Sbjct: 298 IKSMMGAPIVY-------------------RML-------LQQDLSSYKFP--------- 322
Query: 404 KIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSG 463
++ + L P+ L+ + G + E YG TET G
Sbjct: 323 --------HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPG 374
Query: 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG-----PLIFKGYYKDEIQTK 515
++G+ + +++++D + P G+I +R IF GY + +T
Sbjct: 375 YMGTAASCYDVQIID-------DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTA 427
Query: 516 EVIDEDGWFHTGDIGMW 532
I ++ GD G+
Sbjct: 428 ANI-RGDFWLLGDRGIK 443
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 4e-34
Identities = 81/456 (17%), Positives = 153/456 (33%), Gaps = 109/456 (23%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
G K T+ + + + + HGI KG + L +R ++ I+VP
Sbjct: 82 GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141
Query: 169 YDTLGPDAVKYIVNHASVQAVFC-----VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIP 223
L + Y + A ++ + C VP+ ++ + ++P + V ++ I
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWID 201
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPP---KPDDVATICYTSGTTGTPKGAVLSHGN 280
+ L + + + K +D+ + ++SGT G PK +
Sbjct: 202 ------------FRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTY 249
Query: 281 LIASVAGATLGTKFYPSDVY-----------ISYL---PLAHIYERANQVMTVYSGVAVG 326
+ + A ++ + G AV
Sbjct: 250 PLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIA-------------GCAVF 296
Query: 327 FYQG---DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAK 383
Y + +++ + T FC+ P +Y R
Sbjct: 297 VYDYDRFEAKNMLEKASKYGVTTFCAPPTIY-------------------RFL------- 330
Query: 384 KQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGY 443
+ LS N S + ++ PL+P+V + G ++ EG+
Sbjct: 331 IKEDLSHYNFSTL-----------------KYAVVAGEPLNPEVFNRFLEFTGIKLMEGF 373
Query: 444 GMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG 500
G TET I+ + G +G P +I+L+D + + C GEI +
Sbjct: 374 GQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-------RDGRLCEVGEEGEIVINT 426
Query: 501 ----PL-IFKGYYKDEIQTKEVIDEDGWFHTGDIGM 531
P+ +F Y KD +T+E DG++HTGD+
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAW 461
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 2e-31
Identities = 92/485 (18%), Positives = 157/485 (32%), Gaps = 120/485 (24%)
Query: 114 MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLG 173
MTY + + + L G G + L F + C I+VP+Y
Sbjct: 41 MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 174 PDA---VKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230
+ IV ++ V + + + D++ + P
Sbjct: 101 EKLLDKAQRIVTNSKPVIVLMIADHIKKFTA------------------DELNTNPKFLK 142
Query: 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL 290
+ + ++ S+ QP + K +D+A + YTSG+T PKG ++SH NL+ ++
Sbjct: 143 IPAIALESIELNRSSSWQP-TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT 201
Query: 291 GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSV 350
+ S+LP H M + + Y G +M P F
Sbjct: 202 SFHMNDETIIFSWLPPHH-------DMGLIGCILTPIYGGIQAIMM------SPFSFLQN 248
Query: 351 PRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG 410
P + + SG N AY +I+++
Sbjct: 249 PLSWLKHIT--KYKATISGS-----PNFAY------------------DYCVKRIREEKK 283
Query: 411 -----GRVRFMGSGASPLSPDVLD-FLKIC--FGGR---VTEGYGMTETSCLISQLDEG- 458
+GA P+ + ++ F + FG R YG+ E + L++ G
Sbjct: 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343
Query: 459 ---------DNLSGH---------------VGSPNAACEIKLVDVPEMNYTSEDQPCPR- 493
+ H V S N E+K++D P+ PC
Sbjct: 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIID-PDTL-----IPCDFD 397
Query: 494 --GEICVRGPLIFKGYYKDEIQTKEVI--------DEDGWFHTGDIGMWIPG-----GRL 538
GEI V+ + KGY+ +T+ + TGD+G GR+
Sbjct: 398 QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHENELYVTGRI 457
Query: 539 K--II 541
K II
Sbjct: 458 KDLII 462
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 8e-31
Identities = 87/534 (16%), Positives = 160/534 (29%), Gaps = 134/534 (25%)
Query: 73 PDHPEIGTTHDNFVRAVDTFRD---YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSG 129
H + + + ++ DG +T+ + V
Sbjct: 18 GSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAIT---LTWSQLYRRTLNVAQE 74
Query: 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGP---DAVKYIVNHASV 186
L G S G + + E+++ I+VPL G + +++ +S
Sbjct: 75 LSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSP 133
Query: 187 QAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSN 246
A+ ++ ++ ++ P +I +D L N
Sbjct: 134 VAILTTSSAVDDVVQHVARRPGESPPSIIE-VDL-------------------LDLDAPN 173
Query: 247 LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA------GATLGTKFYPSDVY 300
F + A + YTSG+T TP G V+SH N+ + A P+
Sbjct: 174 GYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL 233
Query: 301 ISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMKLMDDMAAL-RPTVFCSVPRLYNRIYA 359
+S+LP H M + G+ G L ++ L RP + L +
Sbjct: 234 VSWLPFYH-------DMGLVIGICAPILGGYPAVLTSPVSFLQRPARW---MHLMASDFH 283
Query: 360 GITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLG-----GRVR 414
++A N A+ L + D G +
Sbjct: 284 AFSAA-----------PNFAF------------------ELAARRTTDDDMAGRDLGNIL 314
Query: 415 FMGSGASPLSPDVLD-FLKIC--FGGR---VTEGYGMTETSCLISQLDEG---------- 458
+ SG+ + + F F + + Y + E + ++ G
Sbjct: 315 TILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDT 374
Query: 459 DNLSGH---------------VGSPNAACEIKLVDVPEMNYTSEDQPCPR---GEICVRG 500
++LS P + +++VD + CP GEI V G
Sbjct: 375 ESLSAGHAKPCAGGGATSLISYMLP-RSPIVRIVD-SDTC-----IECPDGTVGEIWVHG 427
Query: 501 PLIFKGYYKDEIQTKEVI-----------DEDGWFHTGDIGMWIPGGRLKIIDR 543
+ GY++ +++ E W TGD G G++ II R
Sbjct: 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 7e-12
Identities = 44/261 (16%), Positives = 77/261 (29%), Gaps = 32/261 (12%)
Query: 246 NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLP 305
NL P P D + + GTTG PK V + A ++ G
Sbjct: 82 NLVPQGLP-ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG------------YQ 128
Query: 306 LAHIYERANQVMTVYSGV-AVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSA 364
N + + +G VG + + M V R + G T+
Sbjct: 129 HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRS---LSEGDTAT 185
Query: 365 VRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLV-FNKIKDKLGGRVRFMGSGASPL 423
VR + L P+ L+ ++ ++ + + G + L
Sbjct: 186 VRKYTHHLVDQVQNTLMNQDIRFLVT--TPPVLRELLKRPEVVLQMKQSLAQITLGGTEL 243
Query: 424 SPDVLDFL--KICFGGRVTEGYGMTETSCLISQL-DEGDNLSGHVGSPNAACEIKLVDVP 480
+ D + F+ +I + YG T + L ++ S + +VD
Sbjct: 244 NLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVD-S 302
Query: 481 EMNYTSEDQPCP---RGEICV 498
Q RG + V
Sbjct: 303 I-----TAQTVEYGERGNVIV 318
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
++ + +Q LP T + + S+ P+D A I YTSGTT
Sbjct: 562 AACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPAT--AIDPNDPAYIMYTSGTT 619
Query: 269 GTPKGAVLSHGNLI 282
G PKG + +H N+
Sbjct: 620 GKPKGNITTHANIQ 633
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 209 VRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTT 268
R+++ + I ++ V+I + + +NL P K D+A + YTSGTT
Sbjct: 137 ARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHV--PSKSTDLAYVIYTSGTT 194
Query: 269 GTPKGAVLSHGNLIASVAGATLGTKFYPSDV 299
G PKG +L H + D
Sbjct: 195 GNPKGTMLEHKGISNLKVFFENSLNVTEKDR 225
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 53/362 (14%), Positives = 101/362 (27%), Gaps = 119/362 (32%)
Query: 220 DQIPSLPITTGVQIL------TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKG 273
+ + + ++L NL +Q S++ P + A + YTSG+TGTPKG
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNYPE--NLDAYLLYTSGSTGTPKG 192
Query: 274 AVLSHG---NLIASVAGATLGT-----KFYPSDVYISYLPL---AHIYERANQVMTVYSG 322
+S + + + ++ HI E + G
Sbjct: 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE---MFLAWRFG 249
Query: 323 VAVGFYQGDNMKLMDDMAAL----RPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378
+ G+ + ++DD+ T VP S + +G + E
Sbjct: 250 LCA--VTGERLSMLDDLPRTFRELGVTHAGIVP-----------SLLDQTGLVPEDA--- 293
Query: 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR 438
P + ++G G ++P
Sbjct: 294 --------------PH------------------LVYLGVGGEKMTPRTQQIWSSSDRVA 321
Query: 439 VTEGYGMTETS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR--- 493
+ YG TE + C ++ + +G P ++ ++ +
Sbjct: 322 LVNVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGDSVAHVLA------PGSNEHVKKGMA 374
Query: 494 GEICVRGPLIFKGY-----------------YKDEIQTKEVIDEDGWFHTGDIGMWIPGG 536
GE+ + G L+ GY Y+ TGDI
Sbjct: 375 GELVIEGSLVANGYLNRPDAKGFCDINGRKMYR----------------TGDIVRMDADS 418
Query: 537 RL 538
+
Sbjct: 419 SI 420
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA 288
G+ + +L + S +P D +A I ++SGTTG PK +H I +
Sbjct: 139 NGLPCVPVRHLPAAPASVARP--CFAADQIAYINFSSGTTGRPKAIACTHAG-ITRLCLG 195
Query: 289 TLGTKFYPSDV 299
F P
Sbjct: 196 QSFLAFAPQMR 206
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 229 TGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
+Q ++ LL ++ K + I YTSG+TG PKG +S NL
Sbjct: 116 QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQ 169
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 221 QIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGN 280
+ LP+ + + + P K D+ I YTSG+TG PKG +++
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 281 LI 282
L+
Sbjct: 169 LV 170
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 7e-07
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 224 SLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLI 282
++ + V + + + K DD I +TSGTTG PKG +SH NL+
Sbjct: 114 TIEGISLVSLSEIESAKLAE-MPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.97 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 97.5 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 97.29 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 97.02 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 91.78 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 90.7 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 90.69 |
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-65 Score=552.44 Aligned_cols=409 Identities=23% Similarity=0.344 Sum_probs=345.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|.+.++++||++++.... ++.. .+.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ecCC--CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 35899999999999999999975321 3211 2569999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|+++||+++.++.+++.+++++++++++|++.+..+.+.......+.++.++.++...+. ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999999888888877777878888887653211 123556
Q ss_pred HHHHhcCccC------CCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCChH
Q 009114 237 SNLLSQGRSN------LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA 307 (543)
Q Consensus 237 ~~l~~~~~~~------~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lpl~ 307 (543)
.++....... ..+.....++|+++|+|||||||.||||++||++++..+...... ..+.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 6665433221 111222346889999999999999999999999999887766554 5678999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
|.+++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+...
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 300 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------ 300 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc------------------------
Confidence 9999988888999999999987 799999999999999999999999998865210
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCc-cccccChhhhccccccCCCCCCCCCCc
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHV 465 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~-i~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (543)
......+++|.+++||+++++++.+.+++.|++. ++++||+||+++.++.....+...+++
T Consensus 301 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 301 ------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp ------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred ------------------ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 0011125899999999999999999999999875 899999999998887777767778999
Q ss_pred CCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 466 G~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|.|+++++++|+|++++..++.++ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 437 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDR 437 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC--
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEec
Confidence 999999999999987888888776 899999999999999999999999999999999999999999999999998
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-64 Score=542.97 Aligned_cols=401 Identities=25% Similarity=0.329 Sum_probs=339.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.++|++.++++||++|+.+. +. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 68999999999999999999764 22 23467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|+++||+++.++.+++.++++++++++||++.+..+.+......++.++.++.+++... .....|++
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 162 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP----------EGYLAYEE 162 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC----------TTCEEHHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC----------cccccHHH
Confidence 99999999999999999999999999999999999888777776666677777777654321 02346777
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhh--hcCcccCCCcEEEEeCChHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQV 316 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lpl~h~~~~~~~~ 316 (543)
+...... .....++|+++|+|||||||.||||++||++++...... ...+.++++|++++++|++|.+++...+
T Consensus 163 ~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (541)
T 1v25_A 163 ALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY 238 (541)
T ss_dssp HCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHH
T ss_pred HhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHH
Confidence 6543221 134567899999999999999999999999998776653 2346788999999999999999997778
Q ss_pred HHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCC
Q 009114 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (543)
Q Consensus 317 ~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~ 394 (543)
.+++.|+++++.+ .++..+++.++++++|+++++|+++..+.+......
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------- 289 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------------- 289 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----------------------------
Confidence 8899999999986 599999999999999999999999999876432110
Q ss_pred chhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-----------CCCC
Q 009114 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (543)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (543)
...+++|.+++||+++++++.+.+ +.++++++++||+||++.+++...... ...+
T Consensus 290 -------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (541)
T 1v25_A 290 -------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 355 (541)
T ss_dssp -------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHT
T ss_pred -------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccC
Confidence 111589999999999999999999 567999999999999987766543321 1347
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+++++++|+| ++++.++.+. .+.|||+|+||+++.|||++|++|+++|..||||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~p~~~~~~~i~d-~~g~~~~~~~-~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR 433 (541)
T 1v25_A 356 KTGLPIPLVRLRVAD-EEGRPVPKDG-KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 433 (541)
T ss_dssp SCBEECTTCEEEEEC-TTSCBCCSSS-CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCCcCCCcEEEEEC-CCCCCCCCCC-CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeec
Confidence 899999999999999 5666655321 02799999999999999999999999998899999999999999999999998
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-65 Score=547.46 Aligned_cols=402 Identities=26% Similarity=0.390 Sum_probs=341.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...|++++|.+.++++||++|+.+. +.. +.+||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 35689999999999999999999664 221 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||+++.++.+++.+++++++++++|++....+.+.+..... .++ ++.++... .....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-----------~~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVK-VMCVDSAP-----------DGCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCE-EEESSCCC-----------TTCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cce-EEEecCCC-----------CCccC
Confidence 999999999999999999999999999999999999988777766554322 233 44444321 12356
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lpl~h~~~ 311 (543)
++++...... ..+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++++|++|+++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 7777654433 23344567899999999999999999999999999988766543 356789999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 976 567899999999987 799999999999999999999999998765200
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccC-----CCCCCCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSG 463 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (543)
......+++|.+++||+++++++.+.+++.| +++++++||+||++.+++.. .+.+...+
T Consensus 291 ---------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 ---------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ---------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ---------------cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 0011125899999999999999999999998 89999999999998665432 23345678
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+++++++|+|+++++.++.++ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999987788888887 899999999999999999999999999999999999999999999999998
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-64 Score=541.87 Aligned_cols=405 Identities=24% Similarity=0.341 Sum_probs=347.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecC--cccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDG--TVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~--~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
...|+.++|++.++++||++|+.+. ++ ..+..+++||+||.++++++|++|.++|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 3579999999999999999999886 42 123446799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|+++|||++.++.+++.++++++++++||++....+.+.......+ ++.+++.+. ...
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------~~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGG--------------EVN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETC--------------SSS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCC--------------CCc
Confidence 99999999999999999999999999999999999999988887777665544 555666543 124
Q ss_pred eHHHHHhcCccCCCCCCCCCC-CCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 009114 235 TYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~-~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
+++++...+.... +.....+ +|+++|+|||||||.||||++||+++++.+......+.+.++|++++++|++|.+++.
T Consensus 159 ~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~ 237 (549)
T 3g7s_A 159 SLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFG 237 (549)
T ss_dssp CHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHH
T ss_pred CHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHH
Confidence 5777766544322 2223344 8999999999999999999999999999988877778899999999999999999998
Q ss_pred HHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 314 NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 314 ~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
..+.++..|+++++.+ +++..+++.++++++|+++++|+++..+.+........
T Consensus 238 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------------- 292 (549)
T 3g7s_A 238 LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------------------- 292 (549)
T ss_dssp HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-------------------------
T ss_pred HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-------------------------
Confidence 8778899999999887 79999999999999999999999999987743221000
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHh----hC---CccccccChhhhccccccCCCCC-CCCCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG---GRVTEGYGMTETSCLISQLDEGD-NLSGH 464 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~----~~---~~i~~~YG~TE~~~~~~~~~~~~-~~~~~ 464 (543)
...+++|.+++||+++++++.+.+++. ++ ++++++||+||++.+++...... ...++
T Consensus 293 ---------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 357 (549)
T 3g7s_A 293 ---------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTT 357 (549)
T ss_dssp ---------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTS
T ss_pred ---------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCC
Confidence 011589999999999999999999887 66 88999999999988777655433 55688
Q ss_pred cCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC--CCC--eeeccceEEEecCCcEEE
Q 009114 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID--EDG--WFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 465 vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~--~~g--w~~TGDig~~~~~G~l~i 540 (543)
+|.|+++++++|+|+++++.++.|+ .|||||+|+++++|||++|+.|++.|. .+| ||+|||+|++|+||+|+|
T Consensus 358 ~G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~ 434 (549)
T 3g7s_A 358 QGVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434 (549)
T ss_dssp CCEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEE
T ss_pred ccccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEE
Confidence 9999999999999988888888887 899999999999999999999999983 677 999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 435 ~GR 437 (549)
T 3g7s_A 435 QDR 437 (549)
T ss_dssp EEE
T ss_pred ecc
Confidence 998
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-64 Score=539.05 Aligned_cols=404 Identities=24% Similarity=0.330 Sum_probs=339.3
Q ss_pred CCCCHHH-HHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHD-NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~-~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...|+.+ +|.+.++++ |++|+.+. +. .+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3468999 899999999 99999653 21 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||+++.++.+++.++++++++++||++.+..+.+......++....++.++.... .. .+..
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999999888777665545554556666554210 00 2345
Q ss_pred HHHHHhcCccCCCCCCCCC-----C-CCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCCh
Q 009114 236 YSNLLSQGRSNLQPFSPPK-----P-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPL 306 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~-----~-~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lpl 306 (543)
|+++...+.....+..... + +|+++|+|||||||.||||++||+++++.+...... +.+.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 7777654322101111122 4 899999999999999999999999999888776665 678899999999999
Q ss_pred HHHHHHHHH-HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 307 AHIYERANQ-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 307 ~h~~~~~~~-~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
+|.+++... +.++ .|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 999999874 4556 999999887 799999999999999999999999998865200
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCCCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 463 (543)
......+++|.+++||+++++++.+.+++.| ++.++++||+||++..++.........+
T Consensus 303 --------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 --------------------LNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp --------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred --------------------cccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 0001125899999999999999999999999 6889999999999877666544456678
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|.|+++++++|+|+++++.++.|+ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999987888888776 899999999999999999999999998899999999999999999999998
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-64 Score=538.50 Aligned_cols=400 Identities=18% Similarity=0.228 Sum_probs=337.9
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 4578999999999999999999653 1 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCc
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
||+++|+++||+++.++.+++.+++++++++++|++.... ..+..........+.++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 233333334455566666654211
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~ 311 (543)
...+.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555554443333335567899999999999999999999999999999988887788999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
+.. .+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+......
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 303 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK----------------------- 303 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence 885 677899999999987 799999999999999999999999998876421100
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-CCCCCcCC
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (543)
...+++|.+++||+++++++.+.+++.++++++++||+||++..++.....+ ...+++|+
T Consensus 304 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 304 -------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp -------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 0015899999999999999999999999999999999999875544332221 23468999
Q ss_pred CC-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+ ++++++|+| ++++.++.|+ .|||||+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR 437 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGR 437 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEE
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEee
Confidence 96 899999999 7778888776 899999999999999999999999999999999999999999999999998
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-63 Score=538.84 Aligned_cols=405 Identities=19% Similarity=0.257 Sum_probs=343.1
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+..+++|++.++++||++|+.+. +.. +..+.+||+||.++++++|++|+++|+++||+|+|+++|++||+++++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4566679999999999999999876 332 345789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH--HHHHhhccCCCCe-eEEEEeCCCCCCCCCCCcCCCcee
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL--NSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQI 233 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~--~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~ 233 (543)
||+++|+++||+++.++++++.++++++++++||++.+.. +.+.+....++.+ ..++.++... ....
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 199 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV----------LEGW 199 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC----------CTTC
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc----------cccc
Confidence 9999999999999999999999999999999999988754 5555554444544 4555554321 1134
Q ss_pred eeHHHHHhcCccCCCCC---CCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHH
Q 009114 234 LTYSNLLSQGRSNLQPF---SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (543)
Q Consensus 234 ~~~~~l~~~~~~~~~~~---~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~ 310 (543)
..+.+...........+ ....++|+++|+|||||||.||||+++|.+++..+........+.++|++++.+|+.|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTH
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHH
Confidence 66777665443322212 246789999999999999999999999999988877766667889999999999999998
Q ss_pred HHHH-HHHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 311 ERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
+.+. .+.++..|+++++++ +++..+++.|+++++|+++++|+++..+.+..
T Consensus 280 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------- 334 (580)
T 3etc_A 280 CVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------- 334 (580)
T ss_dssp HHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-------------------------
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-------------------------
Confidence 8876 567899999998873 79999999999999999999999998875420
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcC
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (543)
......+++|.+++||+++++++.+.+++.+|++++++||+||++..++.....+...+++|
T Consensus 335 ------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G 396 (580)
T 3etc_A 335 ------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIG 396 (580)
T ss_dssp ------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCB
T ss_pred ------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccc
Confidence 00111258999999999999999999999999999999999999877766655667789999
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeC-----ccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEe
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG-----PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g-----~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~ 541 (543)
+|+|+++++|+| ++++.++.|+ .|||||+| +++++|||++|+.|+++| .+|||+|||+|++|+||+|+|+
T Consensus 397 ~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~ 471 (580)
T 3etc_A 397 KPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV 471 (580)
T ss_dssp EECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEE
Confidence 999999999999 6677777776 89999997 789999999999999999 6999999999999999999999
Q ss_pred cC
Q 009114 542 DR 543 (543)
Q Consensus 542 gR 543 (543)
||
T Consensus 472 GR 473 (580)
T 3etc_A 472 GR 473 (580)
T ss_dssp EE
T ss_pred ec
Confidence 98
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-64 Score=537.07 Aligned_cols=395 Identities=21% Similarity=0.266 Sum_probs=329.0
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 479999999999999999999653 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+.......+.++.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 22223333445566566544311
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~ 312 (543)
.|.++..... .+.+.....++|+++|+|||||||.||||++||+++++.+......+.++++|++++++|++|.+++
T Consensus 162 --~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHT-EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCC-CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhccc-cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 0111211111 1122334678999999999999999999999999999988877777788999999999999999999
Q ss_pred HH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 313 ~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
.. .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+.+.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 85 677899999999987 79999999999999999999999999887642110
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC-CCCCCCCcCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSP 468 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p 468 (543)
....+++|.+++||+++++++.+.+++.++++++++||+||++..++.... .+...+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 001158999999999999999999999999999999999996543332111 11234789999
Q ss_pred CCC-eEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 469 NAA-CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 469 ~~~-~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++ .+++|+| ++++.++.|+ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR 428 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGR 428 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEecc
Confidence 975 5899999 6677777776 899999999999999999999999998899999999999999999999998
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-64 Score=531.11 Aligned_cols=400 Identities=18% Similarity=0.217 Sum_probs=319.4
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++||++|+.+....++..++.+.+||+||.++++++|++|+++|+ +||+|+|+++|++||+++++
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 45899999999999999999998861111334556789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEecCC---CCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCe--eEEEEeCCCCCCCCCCCcCCCc
Q 009114 157 ACSAYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV--RLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~---~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
||+++|+++|||++ .++.+++.++++++++++||++.+..+.+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999999888777665443322 1333332211
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCC------CcEEEEeCC
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYP------SDVYISYLP 305 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~------~d~~l~~lp 305 (543)
. ......+.....++|+++|+|||||||.||||++||+++++.+......+.+.. +|++++++|
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 0 001112334467899999999999999999999999999988877766666666 999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHH
Q 009114 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (543)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a 379 (543)
++|.+++.. .+.+++.|+++++.+ .++..+++.++++++| +..+|.++..+.......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~--------------- 302 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD--------------- 302 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT---------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc---------------
Confidence 999999876 577899999999986 3899999999999999 889999988876531100
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC------CccccccChhhhccccc
Q 009114 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLIS 453 (543)
Q Consensus 380 ~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~ 453 (543)
........++||.+++||+++++++.+.+++.|+ +.++++||+||++..++
T Consensus 303 -----------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 303 -----------------------DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp -----------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred -----------------------ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 0011112268999999999999999999999884 36999999999988776
Q ss_pred cCCCCC-------------------------CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhc
Q 009114 454 QLDEGD-------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (543)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~ 508 (543)
...... ...+++|+|++ ++++|+|.++++.++.++ .|||||+|++|++|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 654332 23358999999 999999976677788776 8999999999999999
Q ss_pred CChhhhhhhcC-----------CCCeeeccceEEEecCCcEEEecC
Q 009114 509 KDEIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|++|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57899999999997 999999999
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-63 Score=530.85 Aligned_cols=397 Identities=19% Similarity=0.248 Sum_probs=331.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.+...|+.++|++.++++||++|+.+. +. .+.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 346789999999999999999999764 22 25699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+....++.+. ...
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWI---------------GAD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEE---------------EHH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEcc---------------Ccc
Confidence 99999999999999999999999999999999999999888777666544333221111110 012
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 009114 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
.+.+....... ..+.....++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 24444432222 23344567899999999999999999999999999999888877788999999999999999999988
Q ss_pred HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
.+.+++.|+++++.+ +++..+++.++++++|++.++|++++.+.+...
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 277 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE------------------------------- 277 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH-------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------------------------
Confidence 666666999999887 799999999999999999999999998866311
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--CCCCCCcCCCCCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAA 471 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (543)
......+++|.+++||+++++++.+.++.. +++++++||+||+++.++..... ....+++|.|.++
T Consensus 278 -----------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 278 -----------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp -----------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred -----------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 111223689999999999999999999987 89999999999998766544332 3567899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 472 ~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++|+| +++...+.+ .|||+|+|+++++|||++|+.|++.| .+|||+|||+|++|+||+|+|+||
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR 411 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDR 411 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEC
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecC
Confidence 9999999 455444433 59999999999999999999999999 799999999999999999999999
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-62 Score=529.11 Aligned_cols=402 Identities=18% Similarity=0.237 Sum_probs=342.2
Q ss_pred CCCCHHHHHHHHHHh-----cCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChh
Q 009114 77 EIGTTHDNFVRAVDT-----FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPE 150 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~e 150 (543)
..+++.++|++.+++ +||++|+.+. ++. +..+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 356778999999999 9999999875 422 2346799999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCC
Q 009114 151 WLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (543)
Q Consensus 151 ~~i~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (543)
|+++++||+++|+++||+++.++.+++.++++++++++||++.+..+.+......++.++.++.+++...
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 181 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC---------- 181 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC----------
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc----------
Confidence 9999999999999999999999999999999999999999999888877776666777777777654210
Q ss_pred ceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHH--HHHhhhcCcccCCCcEEEEeCChHH
Q 009114 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~--~~~~~~~~~~~~~~d~~l~~lpl~h 308 (543)
.....++++...... ..+.....++|+++|+|||||||.||||++||+ ++. ..... ..+.+.++|++++++|++|
T Consensus 182 ~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 182 DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 013467777654332 122344678999999999999999999999999 544 33333 5577889999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 309 IYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
.+++.. .+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+. .
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~----------------- 315 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------D----------------- 315 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS------C-----------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc------c-----------------
Confidence 999885 677899999999885 6999999999999999999999999988652 0
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH 464 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (543)
......+++|.+++||+++++++.+.+++.++++++++||+||++..++.........++
T Consensus 316 --------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 316 --------------------LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp --------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred --------------------ccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 000012589999999999999999999998999999999999998766655444566789
Q ss_pred cCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEe-----CccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEE
Q 009114 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR-----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 465 vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~-----g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~ 539 (543)
+|.|+++++++|+| ++++.++.|+ .|||||+ |+++++|||++|+.|++.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 6678888776 8999999 9999999999999999999 58999999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 451 ~~GR 454 (570)
T 3c5e_A 451 FMGR 454 (570)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9998
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-63 Score=528.30 Aligned_cols=392 Identities=28% Similarity=0.383 Sum_probs=327.0
Q ss_pred HHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHHhcC
Q 009114 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162 (543)
Q Consensus 83 ~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~~~G 162 (543)
++|++.++++||++++... +.. -+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4688999999999999764 111 1469999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHHHHhc
Q 009114 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242 (543)
Q Consensus 163 ~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (543)
+++||+++.++.+++.+++++++++++|++.+..+.+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998765544433322221 2333332110 122222222
Q ss_pred CccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-HHHHHHh
Q 009114 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYS 321 (543)
Q Consensus 243 ~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~-~~~~l~~ 321 (543)
. ....+.....++|+++|+|||||||.||||++||+++.+.+......+.++++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 A-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp S-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred C-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1 1122334567899999999999999999999999999999888887788999999999999999999765 5678899
Q ss_pred CcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 009114 322 GVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (543)
Q Consensus 322 G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~ 400 (543)
|+++++.+ +++..+++.++ ++|+++++|+++..+.+...
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------- 261 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------- 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------------
Confidence 99999887 69999999997 89999999999998865200
Q ss_pred hHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecC
Q 009114 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480 (543)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~ 480 (543)
......+++|.+++||+++++++.+.++..+++++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 262 ----~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 262 ----LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp ----CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred ----ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 0011125899999999999999999999999999999999999987766544455667899999999999999988
Q ss_pred CCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 481 ~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+++.++.|+ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 397 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGR 397 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCS
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEec
Confidence 888888887 899999999999999999999999998899999999999999999999998
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-62 Score=524.07 Aligned_cols=390 Identities=21% Similarity=0.286 Sum_probs=330.4
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++|
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 75 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGA 75 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 479999999999999999999663 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++||+++.++.+++.+++++++++++|++.+..+.+.......+.++.++.+++... .+.
T Consensus 76 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 141 (509)
T 3ivr_A 76 VALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PFA 141 (509)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SCE
T ss_pred HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Chh
Confidence 999999999999999999999999999999999999988876666667777777777754221 122
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
++.........+.....++|+++|+|||||||.||||++||+++++.+......+.++++|++++++|++|.+++...+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 221 (509)
T 3ivr_A 142 PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221 (509)
T ss_dssp EGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHH
Confidence 22221222223344567899999999999999999999999999999888887889999999999999999999988776
Q ss_pred HHH-hCcEEEEecCChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCch
Q 009114 318 TVY-SGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPM 396 (543)
Q Consensus 318 ~l~-~G~~i~~~~~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~ 396 (543)
++. .|+.+++..+++..+++.++++++|+++++|+++..+.+.. .
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-----~----------------------------- 267 (509)
T 3ivr_A 222 LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA-----A----------------------------- 267 (509)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC-----C-----------------------------
T ss_pred HHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc-----c-----------------------------
Confidence 544 45555544589999999999999999999999999987631 0
Q ss_pred hhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEE
Q 009114 397 WDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIK 475 (543)
Q Consensus 397 ~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evk 475 (543)
....+++|.+++||++ ++.+.++..+ ++++++.||+||++++++..... ....++|.|+++++++
T Consensus 268 ----------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~~ 333 (509)
T 3ivr_A 268 ----------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTVA 333 (509)
T ss_dssp ----------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEEE
T ss_pred ----------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEEE
Confidence 0011589999999988 8888888888 89999999999998776654332 2335599999999999
Q ss_pred EeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 476 ivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||
T Consensus 334 i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR 396 (509)
T 3ivr_A 334 VVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGR 396 (509)
T ss_dssp EEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEE
T ss_pred EEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCC
Confidence 999 6677777776 89999999999999999999999999 599999999999999999999998
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-62 Score=537.36 Aligned_cols=416 Identities=18% Similarity=0.253 Sum_probs=340.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...++++++|++.++++||++|+.+. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 73 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 73 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred CChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34678999999999999999999875 333345578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH---------HHHHhhccCC--CCeeEEEEeCCCCCCCCC
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEV--PTVRLIVVIGGIDDQIPS 224 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~--~~l~~ii~~~~~~~~~~~ 224 (543)
+||+++|+++||+++.++++++.++++++++++||+++... +.+.+..... +.++.+++++.......
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~- 228 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID- 228 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-
Confidence 99999999999999999999999999999999999987532 2333333333 24667777764321110
Q ss_pred CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHH-hhhcCcccCCCcEEEEe
Q 009114 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISY 303 (543)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (543)
. .......|++++..... ..+.....++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus 229 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (652)
T 1pg4_A 229 W---QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304 (652)
T ss_dssp C---CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred c---cCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence 0 01123678888764332 1233445689999999999999999999999999877653 33444788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHH
Q 009114 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (543)
Q Consensus 304 lpl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 377 (543)
+|++|+++... .+.+++.|++++++++ ++..+++.++++++|+++++|+++..+.+.....
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------- 371 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA------------- 371 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG-------------
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc-------------
Confidence 99999999854 6789999999999873 7899999999999999999999999886521100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhcccccc
Q 009114 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 378 ~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~ 454 (543)
.+....+++|.+++||+++++++.+++++.+| ++++++||+||+++.++.
T Consensus 372 ---------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 424 (652)
T 1pg4_A 372 ---------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424 (652)
T ss_dssp ---------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred ---------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceec
Confidence 00111268999999999999999999999988 899999999999876665
Q ss_pred CCCC--CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeC--ccchhhhcCChhhhhhhcC--CCCeeeccc
Q 009114 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGD 528 (543)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~TGD 528 (543)
..+. ....+++|+|+++++++|+| ++++.++.++ .|||+|+| |++++|||++|+.|.+.|. .+|||+|||
T Consensus 425 ~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD 500 (652)
T 1pg4_A 425 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 500 (652)
T ss_dssp CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred CCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence 5432 35678999999999999999 5677666665 89999999 7999999999999998862 489999999
Q ss_pred eEEEecCCcEEEecC
Q 009114 529 IGMWIPGGRLKIIDR 543 (543)
Q Consensus 529 ig~~~~~G~l~i~gR 543 (543)
+|++|+||+|+|+||
T Consensus 501 lg~~d~dG~l~i~GR 515 (652)
T 1pg4_A 501 GARRDEDGYYWITGR 515 (652)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEec
Confidence 999999999999998
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-62 Score=536.15 Aligned_cols=419 Identities=18% Similarity=0.220 Sum_probs=342.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLI 153 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~e~~i 153 (543)
....++++++|++.++++||++|+.+. +...+..+.+||+||.++++++|++|+ ++|+++||+|+|+++|++||++
T Consensus 78 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~ 154 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154 (663)
T ss_dssp TCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH
T ss_pred CCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH
Confidence 445689999999999999999999875 333344578999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH---------HHHHhhccCCCCeeEEEEeCCCCCCCCC
Q 009114 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPS 224 (543)
Q Consensus 154 ~~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii~~~~~~~~~~~ 224 (543)
+++||+++|++++|+++.++++++.++|+++++++||+++... +.+.+....++.++.+++++........
T Consensus 155 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999987642 2344445555667778877653210000
Q ss_pred CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHH-hhhcCcccCCCcEEEEe
Q 009114 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISY 303 (543)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (543)
. .......|+++...... ..+..+..++|+++|+|||||||.||||++||++++..+. .....+.+.++|+++++
T Consensus 235 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01124678887764322 2333456789999999999999999999999999876654 33344788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHH
Q 009114 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (543)
Q Consensus 304 lpl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 377 (543)
+|++|+++... .+.+++.|++++++++ ++..+++.|+++++|+++++|+++..+.+...
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------- 375 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD--------------- 375 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc---------------
Confidence 99999999854 6789999999999873 78899999999999999999999987754100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhcccccc
Q 009114 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 378 ~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~ 454 (543)
.. .+....+++|.+++||+|+++++.+++++.+| +++++.||+||+++.++.
T Consensus 376 --------------~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 430 (663)
T 1ry2_A 376 --------------SY-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430 (663)
T ss_dssp --------------TS-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred --------------cc-----------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence 00 00011268999999999999999999999998 899999999999876665
Q ss_pred CCC---CCCCCCCcCCCCCCeEEEEeecCCCCCCCC-CCCCCCceEEEeC--ccchhhhcCChhhhhhhcC--CCCeeec
Q 009114 455 LDE---GDNLSGHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHT 526 (543)
Q Consensus 455 ~~~---~~~~~~~vG~p~~~~evkivd~~~~~~~~~-~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~~--~~gw~~T 526 (543)
..+ .....+++|.|+++++++|+|.++++.++. ++ .|||+|+| |++++|||++|+.|.+.|. .+|||+|
T Consensus 431 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~---~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA---EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp CCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC---EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred cCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc---ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 433 235678999999999999999546766655 54 79999999 5899999999999999874 3899999
Q ss_pred cceEEEecCCcEEEecC
Q 009114 527 GDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 527 GDig~~~~~G~l~i~gR 543 (543)
||+|++|+||+|+|+||
T Consensus 508 GDlg~~d~dG~l~i~GR 524 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGR 524 (663)
T ss_dssp EEEEEECTTCCEEECSC
T ss_pred CCEEEEcCCCCEEEEee
Confidence 99999999999999999
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-62 Score=520.65 Aligned_cols=401 Identities=20% Similarity=0.252 Sum_probs=329.0
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
..+++.++|++.++ +||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34569999999999 9999999653 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCe-eEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
||+++|+++||+++.++++++.+++++++++++|++.+..+.+.......+.+ +.+++++.... .+.....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccc
Confidence 99999999999999999999999999999999999988777666554444444 45555543211 0111235
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHH-HHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l-~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
|+++...... ..+.....++|+++|+|||||||.||||++||+++ ..........+.+.++|++++++|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 7777653322 12233467899999999999999999999999999 666655555578899999999999999999876
Q ss_pred -HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCC
Q 009114 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (543)
Q Consensus 315 -~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (543)
.+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+....
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------ 292 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP------------------------------ 292 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT------------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc------------------------------
Confidence 456899999999873 69999999999999999999999998875420
Q ss_pred CCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCC
Q 009114 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (543)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (543)
......+ .++|.+++||+++++++.+.+++.++++++++||+||++++++.....+...+++|.|+++
T Consensus 293 ~~~~~~~------------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 293 NLPARAD------------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp TCCCGGG------------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred ccccccC------------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 0000000 3799999999999999999999999999999999999976666555555677899999999
Q ss_pred eEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 472 ~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++++|+| ++++.++.|+ .|||||+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR 427 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGR 427 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCc
Confidence 9999999 7778888776 89999999999999999999999999 589999999999999999999998
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-62 Score=517.27 Aligned_cols=386 Identities=19% Similarity=0.253 Sum_probs=316.2
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
+|+.++|++.++++||++|+... +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 74 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILAL 74 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 68999999999999999999653 211 56999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEe--cCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~--~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
+++|+++||+++.++++++.+++++++++++|+ +....+.+.... +.++ ++. +
T Consensus 75 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~-~~~---------------------~ 129 (504)
T 1t5h_X 75 HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG---SGAR-IIF---------------------L 129 (504)
T ss_dssp HHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC---CCCE-EEE---------------------G
T ss_pred HHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc---ccce-eEE---------------------e
Confidence 999999999999999999999999999999999 666554441211 2222 222 2
Q ss_pred HHHHhcCc----cCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCccc--CCCcEEEEeCChHHHH
Q 009114 237 SNLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHIY 310 (543)
Q Consensus 237 ~~l~~~~~----~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~--~~~d~~l~~lpl~h~~ 310 (543)
+++...+. ....+.....++|+++|+|||||||.||||++||+++.+.+......+.+ .++|++++++|++|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 22222110 11112234568999999999999999999999999999888777666677 8899999999999999
Q ss_pred HHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 311 ERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
++.. .+.+++.|+++++.+ +++..+++.|+++++|+++++|+++..+.+......
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 266 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------------- 266 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT-----------------------
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc-----------------------
Confidence 9854 678899999999987 799999999999999999999999998876310000
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCC
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSP 468 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p 468 (543)
.....+++|.+++||+++++++.+.+++.+++.++++||+||++..... . +...+++|.|
T Consensus 267 -----------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~-~--~~~~~~~g~p 326 (504)
T 1t5h_X 267 -----------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYM-R--QPKTGTEMAP 326 (504)
T ss_dssp -----------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEE-E--SCSSSSEEBC
T ss_pred -----------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccccccc-c--CCCCCccccC
Confidence 0001158999999999999999999999999999999999999432221 1 3456889999
Q ss_pred CCCeEEEEeecCCC--CCCCCCCCCCCceEEEe-CccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 469 NAACEIKLVDVPEM--NYTSEDQPCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 469 ~~~~evkivd~~~~--~~~~~~~p~~~GEi~v~-g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
.++++++|+|.++. +.++.|+ .|||+|+ |+++++|||++|+.|++.| .||||+|||+|++|+||+|+|+||
T Consensus 327 ~~~~~~~i~~~~~~~~~~~~~g~---~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR 400 (504)
T 1t5h_X 327 GFFSEVRIVRIGGGVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGR 400 (504)
T ss_dssp CTTCCEEEECTTSCTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCceeEEeccCCCCCcCCCCC---cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCc
Confidence 99999999994432 5666665 8999999 9999999999999999999 799999999999999999999998
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-62 Score=524.78 Aligned_cols=380 Identities=18% Similarity=0.212 Sum_probs=319.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...+++++|++.++++||++|+.+. + +.+||+||.++++++|++|+++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45689999999999999999999664 2 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||+++.++.+++.+++++++++++|++.+.... ......++..+...
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~---------------- 199 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA---------------- 199 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc----------------
Confidence 9999999999999999999999999999999999998764332 22222222211100
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
.............++|+++|+|||||||.||||++||+++.+.+.. .....+.++|++++++|++|..+....
T Consensus 200 ------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 200 ------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 0001112233467899999999999999999999999999877654 344678899999999999998777777
Q ss_pred HHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------- 323 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------- 323 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------
Confidence 88999999999876 5899999999999999999999999988753110
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCC----CCCCCCCcCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE----GDNLSGHVGS 467 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~----~~~~~~~vG~ 467 (543)
..+++|.+++||+++++++.+.++..+ +++++++||+||+++.++.... ......++|+
T Consensus 324 ----------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 324 ----------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred ----------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 015899999999999999999888877 7899999999999876654322 1234567999
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCC--------CeeeccceEEEecCCcEE
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED--------GWFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~--------gw~~TGDig~~~~~G~l~ 539 (543)
|+++++++|+| ++++.++.|+ .|||||+|+++++|||++|+.|+++|..+ |||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6777777776 89999999999999999999999999543 799999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 464 ~~GR 467 (570)
T 4gr5_A 464 YVGR 467 (570)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 9999
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-62 Score=555.77 Aligned_cols=409 Identities=26% Similarity=0.381 Sum_probs=341.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.|...|++++|++.++++||++|+.+. +.. +++||+||.++++++|++|+++|+++||+|+|+++|++||+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~ 129 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS 129 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence 346789999999999999999999664 221 5699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|+++||+++.++++++.++++++++++||++.+..+.+....... .+ .++.+++.... .......
T Consensus 130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~~ 201 (979)
T 3tsy_A 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV------PIPEGCL 201 (979)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS------CCCTTEE
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc------cCCcccc
Confidence 9999999999999999999999999999999999999988776655544332 22 34444432110 0111245
Q ss_pred eHHHHHhcCcc--CCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc----CcccCCCcEEEEeCChHH
Q 009114 235 TYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAH 308 (543)
Q Consensus 235 ~~~~l~~~~~~--~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lpl~h 308 (543)
.|.++...... ...+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 281 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence 56665543322 122334567899999999999999999999999999988766543 356789999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 309 IYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+....
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 338 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET----------------------- 338 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG-----------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc-----------------------
Confidence 999976 567899999999987 7999999999999999999999999888652110
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccC-----CCCCC
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDN 460 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~-----~~~~~ 460 (543)
.....+++|.+++||+++++++.+++++.| +++++++||+||++.+++.. .+...
T Consensus 339 -------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 339 -------------------EKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp -------------------GTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred -------------------cCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 001125899999999999999999999998 89999999999998665433 23345
Q ss_pred CCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEE
Q 009114 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 461 ~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i 540 (543)
..+++|.|+++++++|+|+++++.++.++ .|||||+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 476 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence 67899999999999999987788888887 899999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 477 ~GR 479 (979)
T 3tsy_A 477 VDR 479 (979)
T ss_dssp EEE
T ss_pred ecC
Confidence 998
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-61 Score=518.11 Aligned_cols=380 Identities=19% Similarity=0.263 Sum_probs=315.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
+...|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999653 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++||+++.++.+++.+++++++++++|++.+....+.... ....++.++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC----CCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc----ccCceeeecchh----------------
Confidence 999999999999999999999999999999999999987655443321 111233332210
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
+ .. ........+..++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++...
T Consensus 167 ---~-~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---I-KI-REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---T-TT-SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---h-cc-ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 00 000112234568999999999999999999999999999888877777889999999999999999998878
Q ss_pred HHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCC
Q 009114 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (543)
Q Consensus 316 ~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~ 391 (543)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999876 4889999999999999999999998765220
Q ss_pred CCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC---CCCCCcCCC
Q 009114 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGSP 468 (543)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (543)
...++|.+++||+++++++.+.++.. ++++++||+||++..++.....+ ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 01589999999999999999998874 78999999999986655432222 345789999
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCC------CCeeeccceEEEecCCcEEEec
Q 009114 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIID 542 (543)
Q Consensus 469 ~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~------~gw~~TGDig~~~~~G~l~i~g 542 (543)
+++++++|+| ++++.++.|+ .|||||+|+++++|||++|+.|+++|.. +|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6777777776 8999999999999999999999999943 4699999999999999999999
Q ss_pred C
Q 009114 543 R 543 (543)
Q Consensus 543 R 543 (543)
|
T Consensus 428 R 428 (563)
T 1amu_A 428 R 428 (563)
T ss_dssp E
T ss_pred c
Confidence 8
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-61 Score=511.96 Aligned_cols=383 Identities=19% Similarity=0.235 Sum_probs=318.3
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|++||+++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999764 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHHH
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (543)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ .. ++. ...+.+
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~~-~~~------------------~~~~~~ 125 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-VR-IVS------------------EDNLKD 125 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-SE-EEE------------------THHHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-cc-eec------------------hhhhhh
Confidence 9999999999999999999999999999999997542110 000 00 110 011222
Q ss_pred HHhcC-ccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 239 LLSQG-RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 239 l~~~~-~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
+.... ...+.+.....++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 22211 11222334567899999999999999999999999999999888877788999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+.....
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 254 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------------- 254 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------------
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------------
Confidence 999999999987 488999999999999999999999987754100
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCCC-----CCCCCcCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (543)
......+++|.+++||+++++++.+.+++.| +++++++||+||+++.++.....+ ....++|.
T Consensus 255 -----------~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 255 -----------FSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp -----------CSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred -----------ccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 0011125899999999999999999999998 899999999999987665433221 35678999
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc---CCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|.++++++|+| +++..++.++ .|||+|+||+++.|||++|+.|++.| +.+|||+|||+|++ +||+|+|+||
T Consensus 324 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR 397 (512)
T 3fce_A 324 CKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGR 397 (512)
T ss_dssp ECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEE
T ss_pred ccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecc
Confidence 99999999999 7777777776 89999999999999999999999998 56789999999999 7999999998
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=519.59 Aligned_cols=398 Identities=19% Similarity=0.250 Sum_probs=334.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|++++|++.++ ||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|+++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999653 2 459999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCH-----HHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCc
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (543)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...++...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999997654 223333334455666665544221
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~ 311 (543)
..+.+....... .....+..++|+++|+|||||||.||||+++|+++++.+......+.+.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 234444443322 22334567899999999999999999999999999999888877788999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 009114 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (543)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~ 388 (543)
... .+.+++.|+++++.+ .++..+++.++++++|++.++|.++..+.+........
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------------- 298 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR--------------------- 298 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT---------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc---------------------
Confidence 885 677899999999987 78999999999999999999999999887643211000
Q ss_pred cCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-CCCCCcCC
Q 009114 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (543)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (543)
...+++|.+++||+++++++.+.+...+++++++.||+||++..++...... ....++|.
T Consensus 299 -------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 299 -------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp -------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 0115899999999999999999999999999999999999876554332211 22357899
Q ss_pred CC-CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~-~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+ ++.+++|+| ++++.++.|+ .|||||+|+++++|||++|+.|+++|+.+|||+|||+|++++||.|+|+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR 432 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGR 432 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEee
Confidence 97 788999999 7788888887 899999999999999999999999999999999999999999999999998
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-60 Score=507.29 Aligned_cols=382 Identities=18% Similarity=0.217 Sum_probs=323.9
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEccCChhHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
.|+.++|++.++++||++|+.+. + +++||+||+++++++|++|.+. |.++|++|+++++|+++|+++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999663 2 4699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++||+++.++.+++.+++++++++++|++...... .. ...+....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence 99999999999999999999999999999999996543110 00 0112346677
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
++...............++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 77655443333334467899999999999999999999999999999888877788999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+++.|+++++.+ .++..+++.++++++|++.++|+++..+.....
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 253 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------------- 253 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------------
Confidence 999999999886 488999999999999999999999988754200
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCC-----CCCCCCCcCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDE-----GDNLSGHVGS 467 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~-----~~~~~~~vG~ 467 (543)
......+++|.+++||+++++++.+.+++.| +++++++||+||+++.++.... ......++|.
T Consensus 254 -----------~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 254 -----------FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp -----------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred -----------cccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 0011125899999999999999999999998 8999999999999876654322 1244567999
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC-CCC--eeeccceEEEecCCcEEEecC
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-EDG--WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~-~~g--w~~TGDig~~~~~G~l~i~gR 543 (543)
|+++++++|+| ++++.++.|+ .|||||+|+++++|||++|+.|++.|. .+| ||+|||+|++ +||+|+|+||
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR 396 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGR 396 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEcc
Confidence 99999999999 6678887776 899999999999999999999999982 233 7999999999 5999999998
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-61 Score=511.59 Aligned_cols=382 Identities=19% Similarity=0.220 Sum_probs=319.8
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|+.++|++.++++||++|+... + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|+++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999653 2 4599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++||+++.++++++.+++++++++++|++.+....+ .+..+..+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-----------------------------~~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-----------------------------EGISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-----------------------------TTSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-----------------------------ccCcccchh
Confidence 999999999999999999999999999999999987532111 012334444
Q ss_pred HHHhcCc--cCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC--cccCCCcEEEEeCChHHHHHHH
Q 009114 238 NLLSQGR--SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 238 ~l~~~~~--~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
++..... ..........++|+++|+|||||||.||||++||+++++.+...... +.+.++|++++++|++|.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 4432211 11123345678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 314 ~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+.....
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 257 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--------------------------- 257 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT---------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc---------------------------
Confidence 8888999999999876 388999999999999999999999987654100
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC-----CCCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSG 463 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~-----~~~~~ 463 (543)
......+++|.+++||+++++++.+.+.+.| +++++++||+||+++.++..... ....+
T Consensus 258 ---------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 258 ---------------FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp ---------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred ---------------cccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 0001125899999999999999999999988 89999999999998766543221 13557
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc---CCCCeeeccceEEEecCCcEEE
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKI 540 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~---~~~gw~~TGDig~~~~~G~l~i 540 (543)
++|+|+++++++|+| +++..++.++ .|||||+||+++.|||++|+.|+++| +.+|||+|||+|++|+||+|+|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6777777776 89999999999999999999999998 6788999999999999999999
Q ss_pred ecC
Q 009114 541 IDR 543 (543)
Q Consensus 541 ~gR 543 (543)
+||
T Consensus 399 ~GR 401 (521)
T 3l8c_A 399 GGR 401 (521)
T ss_dssp EEE
T ss_pred eCc
Confidence 998
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=519.17 Aligned_cols=378 Identities=18% Similarity=0.148 Sum_probs=314.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
....|++++|++.++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34689999999999999999999764 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++|||++.++.+++.++++++++++|+++....... ..+..+ .
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~----------------------~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCV----------------------P 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEE----------------------E
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCcee----------------------e
Confidence 99999999999999999999999999999999999765432110 111100 0
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHH
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~ 315 (543)
+..+. ............++|+++|+|||||||.||||+++|+++.+.+.. ...+.+.++|++++++|++|.+++...
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 00000 001111223356899999999999999999999999999887665 445778899999999999999999888
Q ss_pred HHHHHhCcEEEEec---CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
+.+++.|+++++.+ .++..+.+.++++++|++..+|++++.+.+.-.
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------ 272 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------ 272 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------------
Confidence 89999999999864 689999999999999999999999998865200
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhh-CCccccccChhhhccccccCCCC----CCCCCCcCC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (543)
...+++|.+++||+++++++.+.+...+ +++++++||+||++.+++..... .....++|+
T Consensus 273 ---------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 273 ---------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp ---------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred ---------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 0115899999999999988888777665 78999999999998765532221 245678999
Q ss_pred CCCCeEEEEeecCCCCC-CCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCC-------CeeeccceEEEecCCcEE
Q 009114 468 PNAACEIKLVDVPEMNY-TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-------GWFHTGDIGMWIPGGRLK 539 (543)
Q Consensus 468 p~~~~evkivd~~~~~~-~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~-------gw~~TGDig~~~~~G~l~ 539 (543)
|+++++++|+| ++++. .+.|. .|||||+|++|++|||++|++|+++|..+ +||+|||+|++|+||+|+
T Consensus 338 p~~~~~~~i~d-~~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~ 413 (620)
T 4dg8_A 338 AIAGTAVLLLD-EHGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLR 413 (620)
T ss_dssp ECTTEEEEEEC-TTSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEE
T ss_pred cccCcEEEEEC-ccCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEE
Confidence 99999999999 44444 56665 89999999999999999999999999543 799999999999999999
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 414 ~~GR 417 (620)
T 4dg8_A 414 FIGR 417 (620)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 9999
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-60 Score=514.90 Aligned_cols=397 Identities=19% Similarity=0.249 Sum_probs=323.6
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|+.++|++.++++||++|+.+. ++ +..+++||+||.++++++|++|.++|+++||+|+|+++|+++|+++++
T Consensus 9 ~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 9 QCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp TCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 5689999999999999999999876 42 234779999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCC---HHHHHHHHHhcCccEEEecCcCHHHHHhhc-cCCCCeeEEEEeCCCCCCCCCCCcCCCce
Q 009114 157 ACSAYSFISVPLYDTLG---PDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~---~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (543)
||+++|+++||+++.+. .+++.++++++++++++++.+....+.... ...+.+..+ .
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 144 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI-------------------P 144 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------E
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------c
Confidence 99999999999999884 578999999999999999887665543322 112211111 1
Q ss_pred eeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHH
Q 009114 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (543)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~ 312 (543)
...++++... ...........++|+++|+|||||||.||||++||+++++.+......+.+.++|++++++|++|.+++
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~ 223 (590)
T 3kxw_A 145 AIALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGL 223 (590)
T ss_dssp EEEGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred eeechhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhh
Confidence 1112221111 111123345678999999999999999999999999999999888878889999999999999999999
Q ss_pred HH-HHHHHHhCcEEEEec-C----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 313 AN-QVMTVYSGVAVGFYQ-G----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 313 ~~-~~~~l~~G~~i~~~~-~----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
.. .+.+++.|+++++.+ + ++..+++.++++++|++.++|.++..+.+.+....
T Consensus 224 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------- 282 (590)
T 3kxw_A 224 IGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------------- 282 (590)
T ss_dssp HTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------------
T ss_pred HHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------------
Confidence 87 678999999999986 2 89999999999999999999999988866321110
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC------CccccccChhhhccccccCCCC--
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDEG-- 458 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~------~~i~~~YG~TE~~~~~~~~~~~-- 458 (543)
......+++|.+++||+++++++.+.+++.|+ ++++++||+||++++++...+.
T Consensus 283 ------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~ 344 (590)
T 3kxw_A 283 ------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSS 344 (590)
T ss_dssp ------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSC
T ss_pred ------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCC
Confidence 00111268999999999999999999999883 3699999999998776643221
Q ss_pred -------------------------CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhh
Q 009114 459 -------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQ 513 (543)
Q Consensus 459 -------------------------~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~ 513 (543)
....+++|.|+++ ++|+|.+++..++.++ .|||||+||+|++|||++|+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~ 419 (590)
T 3kxw_A 345 YKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPEE 419 (590)
T ss_dssp CCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHHH
T ss_pred ceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChhH
Confidence 1234688999998 8899976677777776 899999999999999999999
Q ss_pred hhhhcCC------CC--eeeccceEEEecCCcEEEecC
Q 009114 514 TKEVIDE------DG--WFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 514 t~~~~~~------~g--w~~TGDig~~~~~G~l~i~gR 543 (543)
|+++|.. +| ||+|||+|++| ||.|+|+||
T Consensus 420 t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR 456 (590)
T 3kxw_A 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGR 456 (590)
T ss_dssp HHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcC
Confidence 9999954 24 99999999999 999999998
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-60 Score=503.30 Aligned_cols=391 Identities=21% Similarity=0.247 Sum_probs=309.1
Q ss_pred CHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHHH
Q 009114 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (543)
Q Consensus 80 tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~~ 159 (543)
|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|+++ +||+|+|+++|+++|+++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999664 2 3599999999999999999987 89999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee-eHHH
Q 009114 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL-TYSN 238 (543)
Q Consensus 160 ~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (543)
++|+++||+++.++++++.+++++++++++|++.+.......... ...++.+.......... ......... ..+.
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 145 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLL---DNTMGIQYDTSNET 145 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeeccccccc---ccccccccccchhh
Confidence 999999999999999999999999999999999775443322111 11111111110000000 000000000 0111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHH
Q 009114 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (543)
Q Consensus 239 l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~ 318 (543)
+...............++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++++|++|.+++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 11111111112334678999999999999999999999999999998888777889999999999999999999988889
Q ss_pred HHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 009114 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (543)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~ 397 (543)
++.|+++++.+ +++..+++.++++++|+++++|+++..+.+....
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------- 271 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------------- 271 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------
Confidence 99999999987 6999999999999999999999999988653100
Q ss_pred hHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCC--CCCCCCcCCCCCCeEEE
Q 009114 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEIK 475 (543)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~evk 475 (543)
...++|.+++||+++++++.+.++. +++++++.||+||+++.++...+. ....+++|.|+++++++
T Consensus 272 -----------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 339 (501)
T 3ipl_A 272 -----------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339 (501)
T ss_dssp -----------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred -----------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence 0027999999999999999999987 599999999999998755543332 24567899999999999
Q ss_pred EeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 476 ivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
|+|.+ .+ ..|||+|+|+++++|||++|+.|++ | .+|||+|||+|++|+||+++|+||
T Consensus 340 i~d~~------~~---~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR 396 (501)
T 3ipl_A 340 IKNPN------KE---GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDR 396 (501)
T ss_dssp EESCC------SS---CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEE
T ss_pred EecCC------CC---CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEcc
Confidence 99943 22 3799999999999999999999988 6 689999999999999999999998
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-60 Score=502.32 Aligned_cols=381 Identities=24% Similarity=0.303 Sum_probs=308.1
Q ss_pred CCCCHHHHHHHHHHhcCC-CccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
.+.|+.++|.+.++++|+ ++|+.+. + +.+||+||.++++++|.+|. .|++|+|+++|++||++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 356777778888888887 9999663 2 46999999999999999875 3789999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeee
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (543)
+||+++|+++|||++.++.+++.+++++++++++|++.+... ......+..+. ++..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~----------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVR----------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTT-----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-cccc-----------------
Confidence 999999999999999999999999999999999999865210 00111222221 1110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH-
Q 009114 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (543)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~- 314 (543)
.....+.....++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++.+|++|.+++..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 00112233467899999999999999999999999999999888877788999999999999999999876
Q ss_pred HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
.+.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------- 266 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------------- 266 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH---------------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch---------------------------
Confidence 678999999999887 7889999999 88999999999999988764211100
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeE
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~e 473 (543)
.....+++|.+++||+++++++.+.++..+++++++.||+||++..++.........+++|+|+++++
T Consensus 267 ------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 267 ------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp ------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred ------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 00001478999999999999999999999999999999999998877766666677789999999999
Q ss_pred EEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 474 vkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++|+| ++++.++...+++.|||+|+|++++.|||++|+.|+++|+.+|||+|||+|++|+||.|+|+||
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR 403 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGR 403 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCC
Confidence 99999 5555555411124899999999999999999999999999999999999999999999999998
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-59 Score=502.97 Aligned_cols=395 Identities=16% Similarity=0.149 Sum_probs=314.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEe-ecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVR-VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~-~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
....|+.++|++.++++||++|+.+... .+......+.+||+||.++++++|++|.+.|+ +||+|+|+++|+++|+++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 3558899999999999999999987510 01112334789999999999999999999999 799999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|+++|||++.++.+++.+++++++++++|++.+....+ ..+....++..+. .
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~----------------~ 154 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN----------------Q 154 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC----------------H
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc----------------h
Confidence 999999999999999999999999999999999999987654321 1111111221110 1
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc--------CcccCCCcEEEEeCCh
Q 009114 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------GTKFYPSDVYISYLPL 306 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~lpl 306 (543)
.+.+....... ........++++++|+|||||||.||||++||+++.+.+..... ...+...++++++.|+
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (562)
T 3ite_A 155 SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASR 233 (562)
T ss_dssp HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCT
T ss_pred hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCc
Confidence 23333222211 12223456789999999999999999999999999887765432 2457788999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 009114 307 AHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (543)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~ 384 (543)
.|.+++...+.++..|+++++.+ ..+..+.+.++++++|++.++|++++.+...
T Consensus 234 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------------ 289 (562)
T 3ite_A 234 AFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------------ 289 (562)
T ss_dssp TSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------------
T ss_pred hhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------------
Confidence 99998888888999999998865 2356788999999999999999988654210
Q ss_pred HHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC-CCCCCC
Q 009114 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSG 463 (543)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~ 463 (543)
....+++|.+++||+++++++.+.++..++++++++||+||++..++.... .+...+
T Consensus 290 ----------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 347 (562)
T 3ite_A 290 ----------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347 (562)
T ss_dssp ----------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTT
T ss_pred ----------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCc
Confidence 001158999999999999999999999889999999999999876554432 335567
Q ss_pred CcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCC--eeeccceEEEecCCcEEEe
Q 009114 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG--WFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 464 ~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~g--w~~TGDig~~~~~G~l~i~ 541 (543)
++|.|+++++++|+|.+++..++.|+ .|||||+|+++++|||++|+.|+..+ .+| ||+|||+|++|+||+|+|+
T Consensus 348 ~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~ 423 (562)
T 3ite_A 348 CIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFL 423 (562)
T ss_dssp EEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred cccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEE
Confidence 89999999999999977777777776 89999999999999999999998776 344 9999999999999999999
Q ss_pred cC
Q 009114 542 DR 543 (543)
Q Consensus 542 gR 543 (543)
||
T Consensus 424 GR 425 (562)
T 3ite_A 424 GR 425 (562)
T ss_dssp EE
T ss_pred cc
Confidence 98
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-56 Score=523.38 Aligned_cols=382 Identities=21% Similarity=0.275 Sum_probs=320.2
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..+++++|++.++++||++|+.+. + +.+||+||.++++++|++|++.|+++|++|+|+++|+++|+++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999664 3 3499999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++|||+|.++.+++.++++++++++|+++.+....+. .++....++.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~------------------ 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT------------------ 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG------------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc------------------
Confidence 9999999999999999999999999999999999876543221 122222333333210
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHH
Q 009114 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (543)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~ 317 (543)
.. . .....+.....++|+++|+|||||||.||||+++|+++.+. ......+.++++|+++.+.|++|..+....+.
T Consensus 592 ~~-~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 667 (1304)
T 2vsq_A 592 RF-E--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667 (1304)
T ss_dssp GG-G--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred cc-c--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence 00 0 01112233467899999999999999999999999999876 44455578899999999999999998888889
Q ss_pred HHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCC
Q 009114 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (543)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~ 393 (543)
+++.|+++++.+ .++..+.+.|.++++|++.++|++++.+.+.....
T Consensus 668 ~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~----------------------------- 718 (1304)
T 2vsq_A 668 SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW----------------------------- 718 (1304)
T ss_dssp HHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHH-----------------------------
T ss_pred HHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhc-----------------------------
Confidence 999999999986 48899999999999999999999999886520000
Q ss_pred CchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC-CccccccChhhhccccccCCC----CCCCCCCcCCC
Q 009114 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDE----GDNLSGHVGSP 468 (543)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~----~~~~~~~vG~p 468 (543)
+ +++|.+++||+++++++.+.+...++ +.++++||+||++..++.... ......++|+|
T Consensus 719 --------~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 782 (1304)
T 2vsq_A 719 --------M--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP 782 (1304)
T ss_dssp --------H--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEE
T ss_pred --------C--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCcee
Confidence 0 37999999999999999999988874 789999999999876654322 22345689999
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcC------CCCeeeccceEEEecCCcEEEec
Q 009114 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIID 542 (543)
Q Consensus 469 ~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~------~~gw~~TGDig~~~~~G~l~i~g 542 (543)
+++++++|+| ++++.++.|. .|||||+|++|++||+|+|++|+++|. .++||+|||+|++++||.|+|+|
T Consensus 783 ~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 783 ISNASVYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEc
Confidence 9999999999 6678888776 899999999999999999999999993 35699999999999999999999
Q ss_pred C
Q 009114 543 R 543 (543)
Q Consensus 543 R 543 (543)
|
T Consensus 859 R 859 (1304)
T 2vsq_A 859 R 859 (1304)
T ss_dssp E
T ss_pred C
Confidence 8
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=310.88 Aligned_cols=213 Identities=16% Similarity=0.129 Sum_probs=182.8
Q ss_pred CCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHHHHHHHHhCcEEEEecCChHh
Q 009114 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK 334 (543)
Q Consensus 255 ~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~~~~~l~~G~~i~~~~~~~~~ 334 (543)
.||+++|+|||||||.||||++||+++.+.+......++++++|++++++|++|++++...+.+++.|+++++.... ..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~-~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT-AN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC-SC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc-cc
Confidence 37899999999999999999999999999998888888999999999999999999999888899999999887632 23
Q ss_pred HHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEE
Q 009114 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414 (543)
Q Consensus 335 l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr 414 (543)
+++.++++++|++.++|+++..+.+.... ....+++|
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-------------------------------------------~~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT-------------------------------------------SGQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT-------------------------------------------GGGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc-------------------------------------------cccCCcce
Confidence 45678899999999999999988652100 00115899
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCc
Q 009114 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494 (543)
Q Consensus 415 ~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~G 494 (543)
.+++||+++++++.+++++ ++++++++||+||+++.++.........+.+|.+.|++++++.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999986 58999999999999988877766777788999999999998754 79
Q ss_pred eEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 495 Ei~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
||+++|+.+ .+|||+|||+|++|+|| +.|+||
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR 248 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGR 248 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEE
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEccc
Confidence 999998642 68999999999999988 667798
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=305.61 Aligned_cols=250 Identities=16% Similarity=0.140 Sum_probs=198.1
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCC-CCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCChH
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLA 307 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~-~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lpl~ 307 (543)
.+.+.+++.... +.......+ +|+++|+|||||||.||||++||+++.+.+.... ....+.++|++++++|+.
T Consensus 64 P~~~~~~l~~~~---p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (436)
T 3qov_A 64 PFTTKSDMRANY---PFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYG 140 (436)
T ss_dssp CCBCHHHHHHTT---TTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCT
T ss_pred CCCCHHHHHhcC---CCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccc
Confidence 445566665432 122334456 8999999999999999999999999977665543 235788999999999998
Q ss_pred HHHHHHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 009114 308 HIYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (543)
Q Consensus 308 h~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (543)
|..+.+. .+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+........
T Consensus 141 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------------ 202 (436)
T 3qov_A 141 MFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID------------------ 202 (436)
T ss_dssp TCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC------------------
T ss_pred cchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC------------------
Confidence 7666554 567899999999876 79999999999999999999999999987753221100
Q ss_pred HHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccc-cccCCCCCCCCCC
Q 009114 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGH 464 (543)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~ 464 (543)
. ..+++|.+++||+++++++.+++++.||++++++||+||+++. +..... ....
T Consensus 203 -------~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g 257 (436)
T 3qov_A 203 -------P---------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ---EQNG 257 (436)
T ss_dssp -------T---------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT---TCSS
T ss_pred -------c---------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC---CCCe
Confidence 0 0158999999999999999999999999999999999999654 332221 1223
Q ss_pred cCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCC------c-
Q 009114 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG------R- 537 (543)
Q Consensus 465 vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G------~- 537 (543)
+|.|.++++++|+|+++++.++.|+ .|||+|+|. |++.| .++||+|||+|+++++| +
T Consensus 258 ~~~~~~~~~v~i~d~~~g~~~~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~ 321 (436)
T 3qov_A 258 MHFWEDCYLVEIIDPETGEPVPEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHL 321 (436)
T ss_dssp EEECTTTEEEEEECTTTCSBCSTTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSC
T ss_pred eEEccCceEEEEEECCCCCCCCCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCcc
Confidence 6778889999999988888888887 899999983 44556 78999999999999998 5
Q ss_pred --EEEecC
Q 009114 538 --LKIIDR 543 (543)
Q Consensus 538 --l~i~gR 543 (543)
++|+||
T Consensus 322 ~il~i~GR 329 (436)
T 3qov_A 322 RIDRIKGR 329 (436)
T ss_dssp EECCCCCB
T ss_pred ccCcccCc
Confidence 699998
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=302.64 Aligned_cols=251 Identities=18% Similarity=0.150 Sum_probs=198.0
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCCh-H
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-A 307 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lpl-~ 307 (543)
.+.+.+++.+.. +.......++++++|+|||||||.||||++||+++...+.... ..+.+.++|++++.+|+ +
T Consensus 69 P~~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 69 PFTTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGL 145 (437)
T ss_dssp CCBCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred CCCCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccc
Confidence 345666665432 1223345678999999999999999999999999877654332 23678899999999999 7
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
|..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+.......
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~-------------------- 205 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL-------------------- 205 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC--------------------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC--------------------
Confidence 8888877788899999998776 6999999999999999999999999998774322100
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccc-cccCCCCCCCCCCc
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~v 465 (543)
.. ..+++|.+++||+++++++.+.+++.||++++++||+||+++. +....+.. ..+ +
T Consensus 206 -----~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~~g-~ 263 (437)
T 2y27_A 206 -----DP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVET-KDG-P 263 (437)
T ss_dssp -----CG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTT-CSS-C
T ss_pred -----Cc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCC-CCc-e
Confidence 00 0158999999999999999999999999999999999998543 33322211 112 5
Q ss_pred CCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEec-CCcE-----E
Q 009114 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-GGRL-----K 539 (543)
Q Consensus 466 G~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~-~G~l-----~ 539 (543)
+.|.++++++|+|++++..++.|+ .|||+|+| .|++.| .++||+|||+|++++ +|++ +
T Consensus 264 ~~~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~------------~t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~ 327 (437)
T 2y27_A 264 TIWEDHFYPEIIDPETGEVLPDGE---LGELVFTS------------LTKEAL-PIIRYRTRDLTRLLPGTARTMRRMEK 327 (437)
T ss_dssp EECTTTEEEEEECTTTCCBCCTTC---CEEEEEEE------------SSCSSS-CCCSEEEEEEECEECCSSSSSCEECC
T ss_pred eEccCceEEEEEcCCCCCCCCCCC---ccEEEEec------------CCcCCc-hhheeecCCEEEEeCCCCCCccccCc
Confidence 667789999999977788888776 89999998 345566 689999999999999 6996 8
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 328 i~GR 331 (437)
T 2y27_A 328 ITGR 331 (437)
T ss_dssp CCEE
T ss_pred cccc
Confidence 9988
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=300.62 Aligned_cols=251 Identities=16% Similarity=0.124 Sum_probs=197.5
Q ss_pred eeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc---CcccCCCcEEEEeCCh-H
Q 009114 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-A 307 (543)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lpl-~ 307 (543)
.+.+.+++.+.. +.......++++++|+|||||||.||||++||+++...+..... .+.+.++|++++.+|+ .
T Consensus 71 P~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 71 PFSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CCBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred CCCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcc
Confidence 445667776432 12233456789999999999999999999999998776544332 4678899999999999 5
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 009114 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (543)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~ 386 (543)
|..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|.+........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~------------------- 208 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD------------------- 208 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence 7777777788899999998876 69999999999999999999999999887643221000
Q ss_pred HhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccc-cccCCCCCCCCCCc
Q 009114 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHV 465 (543)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~-~~~~~~~~~~~~~v 465 (543)
. ..+++|.+++||+++++++.+.+++.||+++++.||+||+++. +...... ...+ +
T Consensus 209 ------~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~~~g-~ 265 (443)
T 2y4o_A 209 ------P---------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVE-TKDG-P 265 (443)
T ss_dssp ------G---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTT-TCCS-E
T ss_pred ------c---------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCC-CCCc-e
Confidence 0 0158999999999999999999999999999999999998543 3322221 1112 5
Q ss_pred CCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecC-CcE-----E
Q 009114 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRL-----K 539 (543)
Q Consensus 466 G~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~-G~l-----~ 539 (543)
+.|.++++++|+|+++++.++.|+ .|||+|+| .|++.| .++||+|||+|+++++ |++ +
T Consensus 266 ~~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~------------~t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~ 329 (443)
T 2y4o_A 266 VIWEDHFYPEIIDPVTGEVLPDGS---QGELVFTS------------LTKEAM-PVIRYRTRDLTALLPPTARAMRRLAK 329 (443)
T ss_dssp EECTTTEEEEEECTTTCCBCCTTC---CEEEEEEE------------SSCSSS-CCSSEEEEEEECEECCSSSSSCEECC
T ss_pred EEccCCeEEEEEcCCCCCCCCCCC---ceEEEEeC------------CCcccC-hhheeecCCEEEEcCCCCCCccccCc
Confidence 557789999999977788888776 89999998 245566 6899999999999999 987 8
Q ss_pred EecC
Q 009114 540 IIDR 543 (543)
Q Consensus 540 i~gR 543 (543)
|+||
T Consensus 330 i~GR 333 (443)
T 2y4o_A 330 ITGR 333 (443)
T ss_dssp CCEE
T ss_pred cccc
Confidence 8888
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=267.37 Aligned_cols=225 Identities=14% Similarity=0.119 Sum_probs=174.4
Q ss_pred CCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh---cCcccCCCcEEEEeCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 009114 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lpl-~h~~~~~~~~~~l~~G~~i~~~ 328 (543)
..++++++|+|||||||.||||+++|+++...+.... ....+.++|++++++|+ +|++++...+.++..|+.+...
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4678999999999999999999999999998887433 44677899999999999 9999999888889999944333
Q ss_pred cCChH-----------------------hHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 009114 329 QGDNM-----------------------KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (543)
Q Consensus 329 ~~~~~-----------------------~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~ 385 (543)
.+++. .+++.++++++|+++++|+++..|++....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~---------------------- 225 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEV---------------------- 225 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHH----------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhh----------------------
Confidence 36666 777799999999999999999998763110
Q ss_pred HHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHH-Hhh-CCccccccChhhhccccccCCCCCCCCC
Q 009114 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK-ICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (543)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~-~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 463 (543)
.....+++|.+++||+++++++.+.++ +.| ++++++.||+||+++++..... .
T Consensus 226 --------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~ 280 (369)
T 3hgu_A 226 --------------------VLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T 280 (369)
T ss_dssp --------------------HHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred --------------------hccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence 000114899999999999999999999 899 8999999999999876643221 1
Q ss_pred CcCCC------CCCeEEEEeecCCCCCCCCCCCCCCceEEEeCcc---chhhhcCChhhhhhhcCCCCeeeccc
Q 009114 464 HVGSP------NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPL---IFKGYYKDEIQTKEVIDEDGWFHTGD 528 (543)
Q Consensus 464 ~vG~p------~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~---v~~gY~~~~~~t~~~~~~~gw~~TGD 528 (543)
++|.| .++++++|+|+++++.++.|+ .|||+|++.. .+.+|...+..+.... .+||+.+|+
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~~~~~l~ry~tgD~~~~~~~-~~g~~~d~~ 350 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLSPWAFYPRVAERDTAIRLPG-VSGFAGDRL 350 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEETTEEEEEEEEEEEEEEECC-STTCSSCEE
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcCcccccccccCCceEEEecC-CCCCcCccc
Confidence 48999 999999999976888888887 8999999732 2445555554444333 456666554
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0021 Score=67.75 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=25.6
Q ss_pred CCCCCeEEEEecCCCC-CCccEEEecHHHHHH
Q 009114 253 PKPDDVATICYTSGTT-GTPKGAVLSHGNLIA 283 (543)
Q Consensus 253 ~~~~d~~~i~~TSGTT-G~PKgv~~th~~l~~ 283 (543)
..++.+.++.-||||| |.||-+.+|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 3567778899999999 889999999876544
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0014 Score=68.84 Aligned_cols=109 Identities=15% Similarity=0.129 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHhh-CCccc-cccChhhhccccccCCCCCCCCCCcCCC-CCC-eEEEEeecCCCC-----
Q 009114 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEMN----- 483 (543)
Q Consensus 413 lr~i~~gga~l~~~~~~~~~~~~-~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~evkivd~~~~~----- 483 (543)
+..+++||. ..-...++..+ +.+++ .+|+.||+. +..+......+..+|.. +|+ .-...++.++.+
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce--eeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 667777773 44445555555 56766 999999953 22222111111223321 222 333455543321
Q ss_pred CCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEec----CCcEEEecC
Q 009114 484 YTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDR 543 (543)
Q Consensus 484 ~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~----~G~l~i~gR 543 (543)
...+-+.+..+||.|...+ |-| -|++||+.+++. ...|.|+||
T Consensus 377 ~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 377 DLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp EGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEE
T ss_pred CHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEe
Confidence 0111122237899998642 332 389999999986 357888887
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0062 Score=63.90 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=33.7
Q ss_pred ceeeeHHHHHhcCcc--CCCCCCCCCCCCeEEEEecCCCC-CCccEEEecHHHHHH
Q 009114 231 VQILTYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTT-GTPKGAVLSHGNLIA 283 (543)
Q Consensus 231 ~~~~~~~~l~~~~~~--~~~~~~~~~~~d~~~i~~TSGTT-G~PKgv~~th~~l~~ 283 (543)
+.+.+++++...-.. +.....-..++.+.++.-||||| |.+|-+.+|...+-.
T Consensus 71 VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 71 VPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SCCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 456677775322100 01111234566677899999999 789999999887644
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=91.78 E-value=2 Score=43.53 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=88.2
Q ss_pred CCCccEEEEEeecCcccce--EEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~e~~i~~lA~~~~G~~~vpl 168 (543)
++..+.... ..|.+|.. ..+|.+.+...+..++..+...|+.++|++..+++-. ...+...+++...|+..+++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 344454333 15665543 4578999988888888888788999999999888853 33345567888899998877
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
... .++.+...+++.++.++++.+..+..+.+... ....++.+++-++
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 654 78899999999999999998887776655422 1256777766544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=1.6 Score=44.01 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=85.4
Q ss_pred cCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccC--ChhHHHHHHHHHhcCCeEEecCCCCCHHHHHHH
Q 009114 105 DGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVN--RPEWLIVDHACSAYSFISVPLYDTLGPDAVKYI 180 (543)
Q Consensus 105 ~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n--~~e~~i~~lA~~~~G~~~vpl~~~l~~~~l~~i 180 (543)
.|.+|. ...+|.+.+...+..++..+...++.++|++..+.+- ....+...++++..|+..++..+ ..++.+...
T Consensus 95 SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~ 173 (436)
T 3qov_A 95 SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKF 173 (436)
T ss_dssp SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHH
T ss_pred CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHH
Confidence 455554 3457999998888888888888899999999998874 34445567888999999887654 478889999
Q ss_pred HHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 181 VNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 181 l~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
+++.++.+++..+..+..+.+... .+..++.+++-++
T Consensus 174 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 174 ISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp HHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred HHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 999999999998887777665422 1456787776554
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=1.9 Score=43.55 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=88.1
Q ss_pred CCCccEEEEEeecCcccc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCC--hhHHHHHHHHHhcCCeEEec
Q 009114 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (543)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~--~e~~i~~lA~~~~G~~~vpl 168 (543)
++.++.... ..|.+|. ...+|.+.+...+..++..+...|+.++|++..+.+.. ...+...+++...|+..+++
T Consensus 89 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 89 QDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp GGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred hhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 344554333 2455554 34579999988888888888788999999999888853 33344567888999998876
Q ss_pred CCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhcc------CCCCeeEEEEeCC
Q 009114 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (543)
Q Consensus 169 ~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (543)
.. ..++.+...+++.++.++++.+..+..+.+... ....++.+++-++
T Consensus 167 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 167 GG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 55 478899999999999999998887777665432 1256777766544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 543 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-63 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 3e-55 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-53 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 1e-48 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 8e-32 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 9e-31 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 4e-30 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 217 bits (553), Expect = 1e-63
Identities = 71/465 (15%), Positives = 141/465 (30%), Gaps = 82/465 (17%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL 168
+ K ++Y E + L+ GI KG + +Y PE + AC+ + +
Sbjct: 99 SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158
Query: 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSC-----------LSEVPTVRLIVVIGG 217
+ P+AV + +S + V + + + S V +V ++V+
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218
Query: 218 IDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLS 277
I + L + S +D I YTSG+TG PKG + +
Sbjct: 219 TGSDIDWQEGRD-----LWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 273
Query: 278 HGNLIASVAGA-TLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG----- 330
G + A ++P D+Y + + + + + G ++G
Sbjct: 274 TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333
Query: 331 DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390
++ + + + + P L A + S
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIR------------------ALMAEGDKAIEGTDRS- 374
Query: 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG---RVTEGYGMTE 447
+R +GS P++P+ ++ G V + + TE
Sbjct: 375 ---------------------SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 413
Query: 448 TS--CLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCP---RGEICVRGPL 502
T + + +G P + LVD +E P G + +
Sbjct: 414 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-------NEGHPQEGATEGNLVITDSW 466
Query: 503 --IFKGYYKDEIQTKEVIDE--DGWFHTGDIGMWIPGGRLKIIDR 543
+ + D + ++ + +GD G I R
Sbjct: 467 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGR 511
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 192 bits (488), Expect = 3e-55
Identities = 98/479 (20%), Positives = 155/479 (32%), Gaps = 79/479 (16%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
D RA F + + GE TY E + GL G+ G
Sbjct: 12 NLWDFLERAAALFGRKEVV-----SRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 66
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199
+ N L A + L P + YI+NHA + + P L +
Sbjct: 67 RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 126
Query: 200 LSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVA 259
+ E+ TV+ VV+ + +
Sbjct: 127 EAIRGELKTVQHFVVMDEKAPEGYLAYE--------------EALGEEADPVRVPERAAC 172
Query: 260 TICYTSGTTGTPKGAVLSHGNLIASVAGAT--LGTKFYPSDVYISYLPLAHIYERANQVM 317
+ YT+GTTG PKG V SH L+ A+ GT DV + +P+ H+
Sbjct: 173 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 232
Query: 318 TVYSGVAVGFY--QGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERL 375
G + D L++ T VP ++ +
Sbjct: 233 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL------------------ 274
Query: 376 FNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF 435
+ + +R + G S ++ +
Sbjct: 275 ------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARFE-RM 309
Query: 436 GGRVTEGYGMTETSCLISQ-----------LDEGDNLSGHVGSPNAACEIKLVDVPEMNY 484
G V +GYG+TETS ++ Q +E L G P +++ D E
Sbjct: 310 GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRP 368
Query: 485 TSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+D GE+ ++GP I GYY +E T+ + DG+F TGDI +W G ++I DR
Sbjct: 369 VPKDGKAL-GEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDR 426
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 187 bits (476), Expect = 2e-53
Identities = 98/476 (20%), Positives = 165/476 (34%), Gaps = 56/476 (11%)
Query: 73 PDHP-EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI 131
P +P E GT + +A+ + GT D + +TY E + +
Sbjct: 10 PFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVN--ITYAEYFEMSVRLAEAMK 65
Query: 132 YHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC 191
+G++ I + N ++ + P D + +N + VF
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 192 VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFS 251
+ L +L+ ++P ++ I+++ D + + +T + P S
Sbjct: 126 SKKGLQKILNVQKKLPIIQKIIIM---DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPES 182
Query: 252 PPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLAH 308
+ +A I +SG+TG PKG L H + A G + P +S +P H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242
Query: 309 IYERANQVMTVYSGVA-VGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRT 367
+ + + G V Y+ + + + + VP L++
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFA--------- 293
Query: 368 SGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDV 427
K+ L GA
Sbjct: 294 -----------------------KSTLIDKYDL---------SNLHEIASGGAPLSKEVG 321
Query: 428 LDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSE 487
K + +GYG+TET+ I EGD+ G VG E K+VD+
Sbjct: 322 EAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGV 381
Query: 488 DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
+Q GE+CVRGP+I GY + T +ID+DGW H+GDI W I+DR
Sbjct: 382 NQR---GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDR 434
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 176 bits (446), Expect = 1e-48
Identities = 80/462 (17%), Positives = 149/462 (32%), Gaps = 73/462 (15%)
Query: 109 GEYKWMTYGEAGTARTEVGSGLIY-HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVP 167
G+ +TY E +V L Y G+ KG + +Y PE +I A S I
Sbjct: 86 GQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSV 145
Query: 168 LYDTLGPDAVKYIVNHASVQAVFC---------VPQTLNSLLSCLSEVPTVRLIVVIGGI 218
++ ++++ +N + V V +T + L E P VR ++V
Sbjct: 146 VFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKT 205
Query: 219 DDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSH 278
++ + + P +P +D + YTSG+TG PKG S
Sbjct: 206 NNPSVAFH----APRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHST 261
Query: 279 -GNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM-TVYSGVAVGFYQG-----D 331
G L+ ++ + DV+ + + I V + G A ++G +
Sbjct: 262 AGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN 321
Query: 332 NMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391
+ D + + T F P L A + + L
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRL------------------LKRAGDSYIENHSLK-- 361
Query: 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR---VTEGYGMTET 448
+R +GS P++ +V ++ G + + Y TE+
Sbjct: 362 --------------------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 401
Query: 449 SCLISQLDEGDNL---SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLI 503
+ G G P + ++D + G + V+ P
Sbjct: 402 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSF 459
Query: 504 FKGYYKDEIQTKEVI--DEDGWFHTGDIGMWIPGGRLKIIDR 543
+ +K+ + + G++ TGD G + I+ R
Sbjct: 460 ARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGR 501
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 126 bits (317), Expect = 8e-32
Identities = 77/484 (15%), Positives = 142/484 (29%), Gaps = 101/484 (20%)
Query: 73 PDHPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIY 132
++P T H F V + V + V E + +TY E ++ I
Sbjct: 17 AEYPRDKTIHQLFEEQVSKRPN------NVAI---VCENEQLTYHELNVKANQLARIFIE 67
Query: 133 HGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV 192
GI K + +G+ + I A VP+ + ++YI++ + + +
Sbjct: 68 KGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQ 127
Query: 193 PQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSP 252
++ + I Q+ + + R P
Sbjct: 128 KHLVHLI-------------------------HNIQFNGQVEIFEEDTIKIREGTNLHVP 162
Query: 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312
K D+A + YTSGTTG PKG +L H + D + ++
Sbjct: 163 SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASV 222
Query: 313 ANQVMTVYSGVAVGFYQG----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTS 368
M + +G ++ D +K + TV P + +++T
Sbjct: 223 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQT- 281
Query: 369 GGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVL 428
+ + S SP ++
Sbjct: 282 -----------------------------------------------LITAGSATSPSLV 294
Query: 429 DFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSED 488
+ K YG TET+ + GH A + +
Sbjct: 295 N--KWKEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQI----YIVDENL 348
Query: 489 QPCP---RGEICVRGPLIFKGYYKDEIQTKEVI------DEDGWFHTGDIGMWIPGGRLK 539
Q GE+C+ G + +GY+K T + + + TGD W+ G ++
Sbjct: 349 QLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIE 408
Query: 540 IIDR 543
+ R
Sbjct: 409 YLGR 412
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 123 bits (308), Expect = 9e-31
Identities = 73/470 (15%), Positives = 128/470 (27%), Gaps = 78/470 (16%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T ++ RA D+ L +T+ E V + L G+
Sbjct: 3 TVNEMLRRAATRAPDHCALAV-------PARGLRLTHAELRARVEAVAARLHADGLRPQQ 55
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCV--PQTLN 197
+ + N + +I A + L L + ++ + A Q +
Sbjct: 56 RVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD 115
Query: 198 SLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPKPDD 257
++ S + L ++ + PI +P
Sbjct: 116 AIFQSGSGARIIFLGDLVRDGEPYSYGPPI---------------------EDPQREPAQ 154
Query: 258 VATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317
A I YTSGTTG PK A++ + V + + + + +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 318 TVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377
V + G Y D L + L
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD--------------ALAA 260
Query: 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG 437
AA +A L +R + + + VL+ + G
Sbjct: 261 AAAHAGSSLKLD----------------------SLRHVTFAGATMPDAVLETVHQHLPG 298
Query: 438 RVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGE-- 495
YG TE + G + +++ D+ GE
Sbjct: 299 EKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG-------VDEIVANGEEG 351
Query: 496 --ICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
I F GY T E + +DGW+ T D+ +W P G ++I+ R
Sbjct: 352 ELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGR 400
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 121 bits (304), Expect = 4e-30
Identities = 85/470 (18%), Positives = 144/470 (30%), Gaps = 73/470 (15%)
Query: 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGS 139
T D + D + T G W +Y E T + +G GI +
Sbjct: 26 TFGDLLRDRAAKYGDRIAI--------TCGNTHW-SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 140 CIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSL 199
+ + N E+ V A + V + + Y A A
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 200 LSCL-----SEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQGRSNLQPFSPPK 254
L S++PT++ I+V G ++ +P L + K
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEEFLP----------------LEDLHTEPVKLPEVK 180
Query: 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314
DVA + + G+TG K +H + I S+ + S VY++ LP+AH Y ++
Sbjct: 181 SSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSS 240
Query: 315 QVMTVYSGVAVGFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRER 374
+ + D +
Sbjct: 241 PGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVT-----------------------ITA 277
Query: 375 LFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC 434
L A S ++ L G + S + +K
Sbjct: 278 LVPPLAMVWMDAASSRRDDLSSLQVLQ----------------VGGAKFSAEAARRVKAV 321
Query: 435 FGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPR 493
FG + + +GM E ++LD+ + + G P + + V + +P
Sbjct: 322 FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDR---DVKPGET 378
Query: 494 GEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543
G + RGP +GYYK E EDG++ TGDI G + + R
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGR 428
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 543 | |||
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.9e-60 Score=508.40 Aligned_cols=403 Identities=25% Similarity=0.339 Sum_probs=340.5
Q ss_pred CCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHH
Q 009114 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (543)
Q Consensus 77 ~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~l 156 (543)
...|++++|++.++++||++|+.+. + .++.+++||+||++++.++|++|.++|+++||+|+|+++|++||+++++
T Consensus 9 ~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 83 (534)
T d1v25a_ 9 EELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 83 (534)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHH
Confidence 3458999999999999999999876 2 3456789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeH
Q 009114 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (543)
Q Consensus 157 A~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (543)
||+++|+++||+++.++.+++.++|+++++++++++......+..+....+.++.++........ .....
T Consensus 84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 153 (534)
T d1v25a_ 84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE----------GYLAY 153 (534)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT----------TCEEH
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccc----------ccccc
Confidence 99999999999999999999999999999999999999998888888788888877765543211 01111
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhc--CcccCCCcEEEEeCChHHHHHHHH
Q 009114 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--GTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~--~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
... .....+.....++++++|+|||||||.||||+++|++++........ ......+|++++++|++|.+++..
T Consensus 154 ~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~ 229 (534)
T d1v25a_ 154 EEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 229 (534)
T ss_dssp HHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTH
T ss_pred ccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccc
Confidence 111 11123344567889999999999999999999999999876544333 366788999999999999999999
Q ss_pred HHHHHHhCcEEEEec--CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCCC
Q 009114 315 QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~--~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~~~ 392 (543)
.+..+..|+.+++.. .++..+.+.+.++++|++.++|.++..+.+.....
T Consensus 230 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~---------------------------- 281 (534)
T d1v25a_ 230 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST---------------------------- 281 (534)
T ss_dssp HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH----------------------------
T ss_pred cceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccc----------------------------
Confidence 888888888888765 68999999999999999999999999887642221
Q ss_pred CCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC-----------CC
Q 009114 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NL 461 (543)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-----------~~ 461 (543)
....+++|.+++||+++++++.++++. ++.+++++||+||++..++...... ..
T Consensus 282 --------------~~~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (534)
T d1v25a_ 282 --------------GHRLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL 346 (534)
T ss_dssp --------------TCCCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHH
T ss_pred --------------cccccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCccccccCccccccc
Confidence 112369999999999999999999986 4889999999999988877654332 12
Q ss_pred CCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEe
Q 009114 462 SGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 462 ~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~ 541 (543)
.+++|+|+++++++|+| ++++..+.+.. +.|||+|+|++++.|||++++.|++.|..||||+|||+|++|+||.|+|+
T Consensus 347 ~~~~G~p~~g~~~~i~d-~~~~~~~~~~~-~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~ 424 (534)
T d1v25a_ 347 KAKTGLPIPLVRLRVAD-EEGRPVPKDGK-ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIK 424 (534)
T ss_dssp HTSCBEECTTCEEEEEC-TTSCBCCSSSC-CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEE
T ss_pred cccceeccCCcEEEEEC-CCCCCCCCCCC-eeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEe
Confidence 46899999999999999 66666655322 37999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009114 542 DR 543 (543)
Q Consensus 542 gR 543 (543)
||
T Consensus 425 GR 426 (534)
T d1v25a_ 425 DR 426 (534)
T ss_dssp EE
T ss_pred cc
Confidence 98
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.5e-60 Score=518.76 Aligned_cols=416 Identities=18% Similarity=0.255 Sum_probs=336.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~ 155 (543)
...+-.+.++++.++++||++|+.+. ....++.+++||+||.+++.++|++|+++|+++||+|+|+++|++|+++++
T Consensus 69 ~~~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~ 145 (643)
T d1pg4a_ 69 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 145 (643)
T ss_dssp CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred ChhhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHH
Confidence 34455677888888999999999876 334456788999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC---------HHHHHhhcc--CCCCeeEEEEeCCCCCCCCC
Q 009114 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLS--EVPTVRLIVVIGGIDDQIPS 224 (543)
Q Consensus 156 lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~--~~~~l~~ii~~~~~~~~~~~ 224 (543)
+||+++|++++|+++.++++++.++++++++++||+++.. ...+..... ..+.++.++.+.........
T Consensus 146 lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 225 (643)
T d1pg4a_ 146 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW 225 (643)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC
T ss_pred HHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccccc
Confidence 9999999999999999999999999999999999997642 222222222 34667778877654322111
Q ss_pred CCcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHh-hhcCcccCCCcEEEEe
Q 009114 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISY 303 (543)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 303 (543)
.......+.+....... .......+++|+++|+|||||||.||||++||++++..... ....+.+.++|+++++
T Consensus 226 ----~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~ 300 (643)
T d1pg4a_ 226 ----QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 300 (643)
T ss_dssp ----CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred ----ccccchhhhhhhcccCc-ccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEe
Confidence 11123445555443322 33445567899999999999999999999999997655443 3445788999999999
Q ss_pred CChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHH
Q 009114 304 LPLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (543)
Q Consensus 304 lpl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 377 (543)
+|++|++++.. .+.+++.|++++++++ ++..+++.++++++|++.++|+++..|.+......
T Consensus 301 ~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~------------ 368 (643)
T d1pg4a_ 301 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI------------ 368 (643)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT------------
T ss_pred CChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc------------
Confidence 99999999876 5678999999999863 78899999999999999999999998865311100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhcccccc
Q 009114 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (543)
Q Consensus 378 ~a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~ 454 (543)
+....++||.+++||+|+++++.+++.+.++ ++++++||+||+++.++.
T Consensus 369 ----------------------------~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~ 420 (643)
T d1pg4a_ 369 ----------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 420 (643)
T ss_dssp ----------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred ----------------------------cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEe
Confidence 0111258999999999999999999999884 779999999999877766
Q ss_pred CCCC--CCCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeC--ccchhhhcCChhhhhhhc--CCCCeeeccc
Q 009114 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGD 528 (543)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~--~~~gw~~TGD 528 (543)
..+. +.+.+++|+|+++++++|+| ++++.++.++ .|||+|+| |+++.|||++++.+.+++ ..+|||+|||
T Consensus 421 ~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~---~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGD 496 (643)
T d1pg4a_ 421 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 496 (643)
T ss_dssp CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred cCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCc---eEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCC
Confidence 5443 35678999999999999999 6677666665 89999999 578999999999998876 4589999999
Q ss_pred eEEEecCCcEEEecC
Q 009114 529 IGMWIPGGRLKIIDR 543 (543)
Q Consensus 529 ig~~~~~G~l~i~gR 543 (543)
+|++|+||+|+|+||
T Consensus 497 l~~~d~dG~l~i~GR 511 (643)
T d1pg4a_ 497 GARRDEDGYYWITGR 511 (643)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEECCCceEEEecc
Confidence 999999999999998
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=1.9e-59 Score=500.89 Aligned_cols=408 Identities=23% Similarity=0.340 Sum_probs=335.6
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
..|++++|.+.+++++++++...- .+... .+.+||+||++++.++|++|+++|+++||+|+|+++|+++|+++++|
T Consensus 16 ~~t~~~~l~~~~~~~~~~P~~~a~--~d~~~--~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA 91 (541)
T d1lcia_ 16 DGTAGEQLHKAMKRYALVPGTIAF--TDAHI--EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 91 (541)
T ss_dssp SSCHHHHHHHHHHHHHTSTTCEEE--EETTT--CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHH
T ss_pred CCCHHHHHHHHHHhhCCCCCeEEE--EeCCC--CeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 469999999999999555433221 12221 24599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|+++||+++.++.+++.++|+++++++||++++.++.+.++..+++.++.+++++...+. ..+..+.
T Consensus 92 ~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 162 (541)
T d1lcia_ 92 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSMY 162 (541)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBEEHH
T ss_pred HHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccc---------cccchhh
Confidence 9999999999999999999999999999999999999999999988889999988888764321 1223333
Q ss_pred HHHhcC------ccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC---cccCCCcEEEEeCChHH
Q 009114 238 NLLSQG------RSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAH 308 (543)
Q Consensus 238 ~l~~~~------~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lpl~h 308 (543)
+..... .....+.....++++++|+|||||||.||||++||++++......... ..+.++|++++++|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 242 (541)
T d1lcia_ 163 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242 (541)
T ss_dssp HHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred hhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccccccccc
Confidence 332211 111223344567899999999999999999999999998776655443 46778999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 009114 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (543)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~ 387 (543)
.++....+..+..++.+.... .+.......+..+++|.++.+|.++..+......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~------------------------ 298 (541)
T d1lcia_ 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI------------------------ 298 (541)
T ss_dssp HHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCG------------------------
T ss_pred cccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccc------------------------
Confidence 999999888888888877766 7888999999999999999999999887652111
Q ss_pred hcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCC-ccccccChhhhccccccCCCCCCCCCCcC
Q 009114 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGG-RVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (543)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~-~i~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (543)
......++|.+++||+++++++.+.+.+.++. .++++||+||+++.++.....+...+++|
T Consensus 299 ------------------~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~svG 360 (541)
T d1lcia_ 299 ------------------DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVG 360 (541)
T ss_dssp ------------------GGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC---CCCCB
T ss_pred ------------------cccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcccCCCCccc
Confidence 11112689999999999999999999998865 58999999999998888888888889999
Q ss_pred CCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 467 ~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+|+|+++++|+|++++..++.|+ .|||||+|++++.||+++++.++..+..+|||+|||+|++|+||.++|+||
T Consensus 361 ~p~~~~~~~i~d~d~~~~~~~g~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR 434 (541)
T d1lcia_ 361 KVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDR 434 (541)
T ss_dssp EECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC--
T ss_pred cccCCCEEEEEECCCCcCCCCCC---eEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeee
Confidence 99999999999988888888887 899999999999999999999999998999999999999999999999998
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-59 Score=512.53 Aligned_cols=419 Identities=18% Similarity=0.230 Sum_probs=333.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEccCChhHHHH
Q 009114 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 76 ~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
...+..+.+|++.++++||++|+.+. ....+..+.+||+||.++++++|++|+ ++|+++||+|+|+++|++||+++
T Consensus 56 ~~lN~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~ 132 (640)
T d1ry2a_ 56 GQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIIT 132 (640)
T ss_dssp CEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHH
T ss_pred CchhHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHH
Confidence 34566789999999999999999886 444556688999999999999999997 68999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcC---------HHHHHhhccCCCCeeEEEEeCCCCCCCCCC
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQT---------LNSLLSCLSEVPTVRLIVVIGGIDDQIPSL 225 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~---------~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~ 225 (543)
++||+++|+++||+++.++++++.++++++++++++++... ...+.........++....+..........
T Consensus 133 ~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (640)
T d1ry2a_ 133 LLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF 212 (640)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC
T ss_pred HHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccccc
Confidence 99999999999999999999999999999999999998643 233444444555566666554433221111
Q ss_pred CcCCCceeeeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhh-cCcccCCCcEEEEeC
Q 009114 226 PITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT-LGTKFYPSDVYISYL 304 (543)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~-~~~~~~~~d~~l~~l 304 (543)
.......+...... ........+..++|+++|+|||||||.||||+++|++++....... ..+.+.++|++++++
T Consensus 213 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~ 288 (640)
T d1ry2a_ 213 ---HAPRDLDWATEKKK-YKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 288 (640)
T ss_dssp ---CSSSEEEHHHHHTT-SCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECS
T ss_pred ---cccccccccccccc-cccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeecc
Confidence 11122333333322 2223444556789999999999999999999999999877654443 347789999999999
Q ss_pred ChHHHHHHHH-HHHHHHhCcEEEEecC-----ChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHH
Q 009114 305 PLAHIYERAN-QVMTVYSGVAVGFYQG-----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNA 378 (543)
Q Consensus 305 pl~h~~~~~~-~~~~l~~G~~i~~~~~-----~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 378 (543)
|++|+++... .+.+++.|++++++++ ++..+++.++++++|++.++|+++..|.+.....
T Consensus 289 pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 354 (640)
T d1ry2a_ 289 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY-------------- 354 (640)
T ss_dssp CTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS--------------
T ss_pred chhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccc--------------
Confidence 9999999876 5678999999988763 7889999999999999999999998775410000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhC---CccccccChhhhccccccC
Q 009114 379 AYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQL 455 (543)
Q Consensus 379 a~~~k~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~ 455 (543)
.+....++||.+++||+|+++++.+++++.+| ++++++||+||++..++..
T Consensus 355 --------------------------~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~ 408 (640)
T d1ry2a_ 355 --------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTP 408 (640)
T ss_dssp --------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEEC
T ss_pred --------------------------cccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccc
Confidence 00111268999999999999999999999986 5689999999998766654
Q ss_pred CCCC---CCCCCcCCCCCCeEEEEeecCCCCCCCCCCCCCCceEEEeC--ccchhhhcCChhhhhhhc--CCCCeeeccc
Q 009114 456 DEGD---NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVI--DEDGWFHTGD 528 (543)
Q Consensus 456 ~~~~---~~~~~vG~p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g--~~v~~gY~~~~~~t~~~~--~~~gw~~TGD 528 (543)
...+ .+.+++|.|+++++++|+|.+++....... ..|||+++| |+++.|||+|++.|+++| +.+|||+|||
T Consensus 409 ~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~--~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGD 486 (640)
T d1ry2a_ 409 LAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGD 486 (640)
T ss_dssp CTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEE
T ss_pred cCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCC--ceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCC
Confidence 4332 567899999999999999955544333322 369999998 689999999999999987 5579999999
Q ss_pred eEEEecCCcEEEecC
Q 009114 529 IGMWIPGGRLKIIDR 543 (543)
Q Consensus 529 ig~~~~~G~l~i~gR 543 (543)
+|++|+||+|+|+||
T Consensus 487 lg~~d~dG~l~i~GR 501 (640)
T d1ry2a_ 487 GAAKDKDGYIWILGR 501 (640)
T ss_dssp EEEECTTCCEEECSC
T ss_pred ceeECCCCCEEEEEc
Confidence 999999999999999
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=4e-55 Score=464.61 Aligned_cols=381 Identities=19% Similarity=0.256 Sum_probs=317.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHH
Q 009114 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (543)
Q Consensus 75 ~~~~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~ 154 (543)
.|+..||.++|++.|+++||++|+.+. + +.+||+||.++++++|.+|+++|+++||+|+|+++|+++|+++
T Consensus 19 ~~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~ 89 (514)
T d1amua_ 19 YPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89 (514)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHH
Confidence 468899999999999999999999764 2 4599999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceee
Q 009114 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (543)
Q Consensus 155 ~lA~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (543)
++||+++|++++|+++.++++++.+++++++++++|++....+.+...... . .....+...
T Consensus 90 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~-~~~~~~~~~--------------- 150 (514)
T d1amua_ 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN---G-QVEIFEEDT--------------- 150 (514)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC---S-EEEECCCST---------------
T ss_pred HHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc---c-ccccccccc---------------
Confidence 999999999999999999999999999999999999998877665443211 1 111111110
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHHH
Q 009114 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (543)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~~ 314 (543)
...........+..++|+++|+|||||||.||+|++||+++...+........+..+|++++++|++|.+++..
T Consensus 151 ------~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 224 (514)
T d1amua_ 151 ------IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE 224 (514)
T ss_dssp ------TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH
T ss_pred ------ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceecccccccccc
Confidence 01111122334567899999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHhCcEEEEec----CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 315 QVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 315 ~~~~l~~G~~i~~~~----~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
.+.++..|+++++.. .+.....+.+....++.+..+|.......
T Consensus 225 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 272 (514)
T d1amua_ 225 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD-------------------------------- 272 (514)
T ss_dssp HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC--------------------------------
T ss_pred ccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc--------------------------------
Confidence 899999999998875 46777888999999999999997654211
Q ss_pred CCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCC---CCCCCcCC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGS 467 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~---~~~~~vG~ 467 (543)
.....++|.+++||+++++++.+++.. ++.++++||+||++.+++...... ...++.|.
T Consensus 273 ----------------~~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
T d1amua_ 273 ----------------PERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGA 334 (514)
T ss_dssp ----------------TTTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBE
T ss_pred ----------------ccccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCccccccc
Confidence 011258999999999999999987765 678999999999988776554433 34567889
Q ss_pred CCCCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhc------CCCCeeeccceEEEecCCcEEEe
Q 009114 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI------DEDGWFHTGDIGMWIPGGRLKII 541 (543)
Q Consensus 468 p~~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~------~~~gw~~TGDig~~~~~G~l~i~ 541 (543)
+.++.+++++| ++++..+.++ .|||+|+||++++|||++++.+.+.| +.||||+|||+|++|+||+|+|+
T Consensus 335 ~~~~~~v~~~d-~~~~~~~~g~---~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~ 410 (514)
T d1amua_ 335 PIQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYL 410 (514)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEE
T ss_pred ceeeeeEeeec-ccceecCCCC---eeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEE
Confidence 99999999999 7888888887 89999999999999999999999987 45789999999999999999999
Q ss_pred cC
Q 009114 542 DR 543 (543)
Q Consensus 542 gR 543 (543)
||
T Consensus 411 GR 412 (514)
T d1amua_ 411 GR 412 (514)
T ss_dssp EE
T ss_pred ec
Confidence 98
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.7e-53 Score=453.98 Aligned_cols=395 Identities=21% Similarity=0.269 Sum_probs=323.0
Q ss_pred CCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHHH
Q 009114 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (543)
Q Consensus 79 ~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA~ 158 (543)
.|++++|++.|+++||++|+.+. + +.+||+||++++.++|++|+++|+++||+|+|+++|+++|+++++||
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 95 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL 95 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 69999999999999999999664 3 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHH-----HHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCcee
Q 009114 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNS-----LLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQI 233 (543)
Q Consensus 159 ~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~-----l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~ 233 (543)
+++|+++||++++++.+++.++|++++++++++++..... ........+.+...+...... ..
T Consensus 96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 163 (536)
T d1mdba_ 96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------EF 163 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT------------TS
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccc------------cc
Confidence 9999999999999999999999999999999998643221 111111233333333332211 11
Q ss_pred eeHHHHHhcCccCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcCcccCCCcEEEEeCChHHHHHHH
Q 009114 234 LTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERA 313 (543)
Q Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lpl~h~~~~~ 313 (543)
..++++ ...+....+..++|+++|+|||||||.||||++||+++.+.+......+.+.++|++++.+|+.|.+++.
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~ 239 (536)
T d1mdba_ 164 LPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS 239 (536)
T ss_dssp EEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccccccccccccccccccccccee
Confidence 222222 1223344567889999999999999999999999999999998888888899999999999999999987
Q ss_pred H-H-HHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcC
Q 009114 314 N-Q-VMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSG 390 (543)
Q Consensus 314 ~-~-~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~~ 390 (543)
. . ...+..|.+++..+ +++..+...+++++++.+..+|..+..+........
T Consensus 240 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 294 (536)
T d1mdba_ 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------------- 294 (536)
T ss_dssp SSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------------
T ss_pred eccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccc-------------------------
Confidence 5 3 33455567776665 799999999999999999999999988765322211
Q ss_pred CCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCC-CCCCCCCcCCCC
Q 009114 391 KNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSGHVGSPN 469 (543)
Q Consensus 391 ~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~ 469 (543)
...+++|.+++||+++++++.+.++..+++.....||.+|.+........ .....+++|.|+
T Consensus 295 -----------------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~ 357 (536)
T d1mdba_ 295 -----------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPM 357 (536)
T ss_dssp -----------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEES
T ss_pred -----------------cccCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccccCCcccCC
Confidence 11258999999999999999999999999999999999997765554333 224457899998
Q ss_pred CCeEEEEeecCCCCCCCCCCCCCCceEEEeCccchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 470 ~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
++....+++.++++.++.++ .|||+++|+.++.||+++++.+...++++|||+|||+|++++||+|+|+||
T Consensus 358 ~~~~~~~v~~~~g~~~~~~~---~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR 428 (536)
T d1mdba_ 358 SPYDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGR 428 (536)
T ss_dssp STTCEEEEECTTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCcceEEEEcCCCCeecccc---cceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCC
Confidence 76666666657777777665 899999999999999999999999999999999999999999999999998
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.9e-49 Score=418.12 Aligned_cols=391 Identities=18% Similarity=0.207 Sum_probs=313.1
Q ss_pred CCCHHHHHHHHHHhcCCCccEEEEEeecCcccceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCChhHHHHHHH
Q 009114 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (543)
Q Consensus 78 ~~tl~~~~~~~~~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~n~~e~~i~~lA 157 (543)
++|++++|++.++++||++|+.+. +.. +++||+||.+++.++|++|+++|+++||+|+|+++|+++|+++++|
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 479999999999999999999775 332 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhcCccEEEecCcCHHHHHhhccCCCCeeEEEEeCCCCCCCCCCCcCCCceeeeHH
Q 009114 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (543)
Q Consensus 158 ~~~~G~~~vpl~~~l~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (543)
|+++|++++||++.++++++.+++++++++++|++..... ........... .++ .+.
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~~~-~~i---------------------~~~ 130 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGSGA-RII---------------------FLG 130 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTCCC-EEE---------------------EHH
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhcccc-ccc---------------------cch
Confidence 9999999999999999999999999999999999875322 22222122222 233 233
Q ss_pred HHHhcCc----cCCCCCCCCCCCCeEEEEecCCCCCCccEEEecHHHHHHHHHhhhcC--cccCCCcEEEEeCChHHHHH
Q 009114 238 NLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYE 311 (543)
Q Consensus 238 ~l~~~~~----~~~~~~~~~~~~d~~~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lpl~h~~~ 311 (543)
++...+. ..+......+++++++|+|||||||.||+|+++|+++.+.+...... ......|++++.+|+.|.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 210 (503)
T d3cw9a1 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVG 210 (503)
T ss_dssp HHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHH
T ss_pred hhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccc
Confidence 3322221 12233445678999999999999999999999999999888776655 34456789999999998888
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHhHHHHHHhhCCeEEEechHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhc
Q 009114 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (543)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~k~t~~~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~a~~~k~~~~~~ 389 (543)
... .+.+...++.+++.. +++..+...+..++++++..+|..+..+........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 266 (503)
T d3cw9a1 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG------------------------ 266 (503)
T ss_dssp HHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTC------------------------
T ss_pred cccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccc------------------------
Confidence 876 455666666666655 799999999999999999999999987765322111
Q ss_pred CCCCCchhhHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHhhCCccccccChhhhccccccCCCCCCCCCCcCCCC
Q 009114 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPN 469 (543)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 469 (543)
++...+++|.+++||+++++++...++..++..+.+.||+||++..+.............+.+.
T Consensus 267 ----------------~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~ 330 (503)
T d3cw9a1 267 ----------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFS 330 (503)
T ss_dssp ----------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSEEBCCTTC
T ss_pred ----------------ccccccceEEEEeccccccccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence 1112268999999999999999999999999999999999999887777666555555566565
Q ss_pred CCeEEEEeecCCCCCCCCCCCCCCceEEEeCc-cchhhhcCChhhhhhhcCCCCeeeccceEEEecCCcEEEecC
Q 009114 470 AACEIKLVDVPEMNYTSEDQPCPRGEICVRGP-LIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (543)
Q Consensus 470 ~~~evkivd~~~~~~~~~~~p~~~GEi~v~g~-~v~~gY~~~~~~t~~~~~~~gw~~TGDig~~~~~G~l~i~gR 543 (543)
+...+.+.+ ..++..+.|+ .|++++++. ....||+++++.|++.| .||||+|||+|++|+||.|+++||
T Consensus 331 ~~~~~~~~~-~~~~~~~~g~---~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR 400 (503)
T d3cw9a1 331 EVRIVRIGG-GVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGR 400 (503)
T ss_dssp CEEEECTTS-CTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEE
T ss_pred cceeeeeec-ccCcccCCCc---cccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCC
Confidence 555555544 5556666665 788777755 55678999999999999 789999999999999999999998
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