Citrus Sinensis ID: 009128

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTVDID
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHEEEEcccHHHHHccccccccccccHHHHHHHHccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccHHccccccccccccHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHEEEHHHEEccccEHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHEHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHccccccccccccccHHHHccccccccccccccc
matsatgqpqfiastggnrsfsnapliknedadqivvpdktswkNLFAYIGPGFLVSIayidpgnfetdlqsgaqYKYELLWIILVASCAALIIQSLAANLGVVTGKHLaehcrneypkvpnFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFfaelgyakpeaKEVLHglfvpqlkgngatGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGavcsssninpedqasckdldlnkASFLLRNVLGSWSSKLFAIALLAsgqsstitgtYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFelpfalvpllkftsskvkmgmhANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTThenqhstnesgnaslyslprediasmqlpsrsgtvdid
matsatgqpqfiastggnrsfSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTthenqhstnesGNASLYSLPrediasmqlpsrsgtvdid
MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTVDID
*******************************ADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNI******SCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLAL****************************************
*****************************************SWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALV************K*ACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEA****************************EDIASM************
********PQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTH*********GNASLYSLPREDIASMQLP*********
***************************K**DADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLAL*************NASLYSLPREDIASMQL**********
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MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTVDID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query543 2.2.26 [Sep-21-2011]
Q9SAH8532 Metal transporter Nramp1 yes no 0.979 1.0 0.779 0.0
Q9S9N8527 Metal transporter Nramp6 no no 0.953 0.982 0.796 0.0
Q653V6550 Metal transporter Nramp3 yes no 0.990 0.978 0.736 0.0
Q8H4H5538 Metal transporter Nramp5 no no 0.933 0.942 0.605 1e-173
Q0D7E4518 Metal transporter Nramp1 no no 0.837 0.878 0.615 1e-166
Q6ZG85545 Metal transporter NRAT1 O no no 0.937 0.933 0.514 1e-154
Q5QN13550 Metal transporter Nramp4 no no 0.826 0.816 0.460 1e-120
Q9FN18512 Metal transporter Nramp4 no no 0.847 0.898 0.406 5e-91
Q10Q65524 Metal transporter Nramp2 no no 0.825 0.854 0.420 2e-90
Q869V1533 Metal transporter nramp1 yes no 0.710 0.724 0.448 1e-89
>sp|Q9SAH8|NRAM1_ARATH Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/543 (77%), Positives = 476/543 (87%), Gaps = 11/543 (2%)

Query: 1   MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAY 60
           MA + +G+ QFI+S+GGNRSFSN+PLI+N D++QI+V +K SWKN FAY+GPGFLVSIAY
Sbjct: 1   MAATGSGRSQFISSSGGNRSFSNSPLIENSDSNQIIVSEKKSWKNFFAYLGPGFLVSIAY 60

Query: 61  IDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV 120
           IDPGNFETDLQ+GA YKYELLWIILVASCAAL+IQSLAANLGVVTGKHLAE CR EY KV
Sbjct: 61  IDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKV 120

Query: 121 PNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRK 180
           PNF+LWV+AEIA+VACDIPEVIGTAFALNMLF IPVWIGVLLTG STLILLALQ+YGVRK
Sbjct: 121 PNFMLWVVAEIAVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQKYGVRK 180

Query: 181 LEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240
           LEFLIAFLVFT+A CFF EL Y+KP+  EVLHGLFVPQLKGNGATGLAISLLGAMVMPHN
Sbjct: 181 LEFLIAFLVFTIAICFFVELHYSKPDPGEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240

Query: 241 LFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINP 300
           LFLHSALVLSRKIPRS   IKEACRFY+IESG AL VAFLINVSVISVSGAVC++ N++P
Sbjct: 241 LFLHSALVLSRKIPRSASGIKEACRFYLIESGLALMVAFLINVSVISVSGAVCNAPNLSP 300

Query: 301 EDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 360
           ED+A+C+DLDLNKASFLLRNV+G WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR
Sbjct: 301 EDRANCEDLDLNKASFLLRNVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 360

Query: 361 LKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKV 420
           L+PWLRN LTRCLAI+PSLIVALIGGSAGAG+LIIIASMILSFELPFALVPLLKFTS K 
Sbjct: 361 LEPWLRNLLTRCLAIIPSLIVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSCKT 420

Query: 421 KMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMA 480
           KMG H N +AITA+TW+IG LIM IN+YYL +SFIK L H ++KL+ VVF GI GF+ +A
Sbjct: 421 KMGSHVNPMAITALTWVIGGLIMGINIYYLVSSFIKLLIHSHMKLILVVFCGILGFAGIA 480

Query: 481 VYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTV 540
           +YLA +AYLV RKN+ A+ LL     +N           + +LPR+DI +MQLP R  T 
Sbjct: 481 LYLAAIAYLVFRKNRVATSLLISRDSQN-----------VETLPRQDIVNMQLPCRVSTS 529

Query: 541 DID 543
           D+D
Sbjct: 530 DVD 532
High affinity manganese (Mn) transporter involved in Mn acquisition from the soil. Required for Mn uptake into the root in conditions of low Mn availability. Can transport iron (Fe), cadmium (Cd) and cobalt (Co).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S9N8|NRAM6_ARATH Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2 Back     alignment and function description
>sp|Q653V6|NRAM3_ORYSJ Metal transporter Nramp3 OS=Oryza sativa subsp. japonica GN=NRAMP3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H4H5|NRAM5_ORYSJ Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1 Back     alignment and function description
>sp|Q0D7E4|NRAM1_ORYSJ Metal transporter Nramp1 OS=Oryza sativa subsp. japonica GN=NRAMP1 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZG85|NRAT1_ORYSJ Metal transporter NRAT1 OS=Oryza sativa subsp. japonica GN=NRAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q5QN13|NRAM4_ORYSJ Metal transporter Nramp4 OS=Oryza sativa subsp. japonica GN=NRAMP4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN18|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1 Back     alignment and function description
>sp|Q10Q65|NRAM2_ORYSJ Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1 Back     alignment and function description
>sp|Q869V1|NRAM1_DICDI Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
356550656544 PREDICTED: metal transporter Nramp6-like 0.992 0.990 0.833 0.0
224115800541 nramp transporter [Populus trichocarpa] 0.992 0.996 0.848 0.0
356523294545 PREDICTED: metal transporter Nramp1-like 0.994 0.990 0.829 0.0
356557217546 PREDICTED: metal transporter Nramp6-like 0.992 0.987 0.835 0.0
255572735546 metal transporter, putative [Ricinus com 0.981 0.976 0.856 0.0
356526260550 PREDICTED: metal transporter Nramp6-like 0.992 0.98 0.832 0.0
225465528541 PREDICTED: metal transporter Nramp6 [Vit 0.985 0.988 0.843 0.0
82581291537 NRAMP family metal transporter [Chengiop 0.987 0.998 0.810 0.0
15220858532 metal transporter Nramp1 [Arabidopsis th 0.979 1.0 0.779 0.0
147866830595 hypothetical protein VITISV_034005 [Viti 0.985 0.899 0.762 0.0
>gi|356550656|ref|XP_003543701.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/540 (83%), Positives = 489/540 (90%), Gaps = 1/540 (0%)

Query: 4   SATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAYIDP 63
           S +GQPQFI+STG NRSFSNAPLI+N D +QIVVPD+ SWKNLFAY+GPGFLVSIAYIDP
Sbjct: 6   SGSGQPQFISSTG-NRSFSNAPLIENSDTNQIVVPDRKSWKNLFAYMGPGFLVSIAYIDP 64

Query: 64  GNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNF 123
           GNFETDLQSGAQYKYELLWIIL+ASCAAL+IQS+AANLGVVTGKHLAEHCR EYP+VPNF
Sbjct: 65  GNFETDLQSGAQYKYELLWIILLASCAALVIQSMAANLGVVTGKHLAEHCRAEYPRVPNF 124

Query: 124 ILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEF 183
           ILW++AEIAIVACDIPEVIGTAFALNMLF IPVWIGVLLTG STL+LLALQQYGVRKLEF
Sbjct: 125 ILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLMLLALQQYGVRKLEF 184

Query: 184 LIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHNLFL 243
           LIAFLVFT+A CF  ELGYAKP+AKEVL GLF P+LKG+GATGLAISLLGAMVMPHNLFL
Sbjct: 185 LIAFLVFTIAACFMVELGYAKPDAKEVLKGLFEPELKGSGATGLAISLLGAMVMPHNLFL 244

Query: 244 HSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINPEDQ 303
           HSALVLSRKIPRSV+ I+EACRFYMIES FAL VAFLINV VISVSGAVC+SSN+N EDQ
Sbjct: 245 HSALVLSRKIPRSVQGIREACRFYMIESAFALMVAFLINVCVISVSGAVCNSSNLNAEDQ 304

Query: 304 ASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKP 363
            SC+DLDLNKASFLLRNVLG WSSKLF IAL ASGQSSTITGTYAGQYVMQGFLDLRL+P
Sbjct: 305 MSCQDLDLNKASFLLRNVLGKWSSKLFGIALFASGQSSTITGTYAGQYVMQGFLDLRLEP 364

Query: 364 WLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMG 423
           W+RN LTRCLAIVPSLIVA+IGGSAGAG+LII+ASMILSFELPFALVPLLKFTSSK KMG
Sbjct: 365 WIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIVASMILSFELPFALVPLLKFTSSKTKMG 424

Query: 424 MHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYL 483
            H NS  I+A+TWIIG+L+M IN+YYL T FIK L H +LK+   VFLGI GFS MA+YL
Sbjct: 425 THVNSTMISAVTWIIGTLLMAINIYYLITGFIKLLLHSHLKIAAKVFLGILGFSGMAMYL 484

Query: 484 AGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTVDID 543
           AG+ YLVLRKNKEA+HLLALT  ENQ  TNE GN S+YSLPREDI SMQLP RS   D+D
Sbjct: 485 AGITYLVLRKNKEATHLLALTATENQQMTNEQGNGSIYSLPREDIVSMQLPQRSTPADVD 544

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115800|ref|XP_002332060.1| nramp transporter [Populus trichocarpa] gi|222831946|gb|EEE70423.1| nramp transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523294|ref|XP_003530275.1| PREDICTED: metal transporter Nramp1-like [Glycine max] Back     alignment and taxonomy information
>gi|356557217|ref|XP_003546914.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
>gi|255572735|ref|XP_002527300.1| metal transporter, putative [Ricinus communis] gi|223533300|gb|EEF35052.1| metal transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356526260|ref|XP_003531736.1| PREDICTED: metal transporter Nramp6-like [Glycine max] Back     alignment and taxonomy information
>gi|225465528|ref|XP_002273263.1| PREDICTED: metal transporter Nramp6 [Vitis vinifera] gi|297745101|emb|CBI38940.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|82581291|dbj|BAE48710.1| NRAMP family metal transporter [Chengiopanax sciadophylloides] Back     alignment and taxonomy information
>gi|15220858|ref|NP_178198.1| metal transporter Nramp1 [Arabidopsis thaliana] gi|29839673|sp|Q9SAH8.1|NRAM1_ARATH RecName: Full=Metal transporter Nramp1; Short=AtNramp1 gi|6503294|gb|AAF14670.1|AC011713_18 Identical to gb|AF181687 metal ion transporter from Arabidopsis thaliana. ESTs gb|Z30530, gb|AA585940, gb|AI998720 and gb|Z33946 come from this gene [Arabidopsis thaliana] gi|7108911|gb|AAF36535.1|AF165125_1 NRAMP1 protein [Arabidopsis thaliana] gi|117168063|gb|ABK32114.1| At1g80830 [Arabidopsis thaliana] gi|332198334|gb|AEE36455.1| metal transporter Nramp1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147866830|emb|CAN78852.1| hypothetical protein VITISV_034005 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query543
TAIR|locus:2025677532 NRAMP1 "natural resistance-ass 0.979 1.0 0.780 4.6e-224
TAIR|locus:2200437527 NRAMP6 "NRAMP metal ion transp 0.953 0.982 0.796 1.2e-223
UNIPROTKB|Q0D7E4518 NRAMP1 "Metal transporter Nram 0.834 0.874 0.618 6.5e-154
UNIPROTKB|Q6ZG85545 NRAT1 "Metal transporter NRAT1 0.843 0.840 0.554 2.4e-140
UNIPROTKB|A7MBI9562 SLC11A2 "Uncharacterized prote 0.499 0.482 0.458 7.9e-93
ZFIN|ZDB-GENE-021115-1547 slc11a2 "solute carrier family 0.486 0.482 0.492 2.1e-92
MGI|MGI:1345279568 Slc11a2 "solute carrier family 0.471 0.450 0.479 1.9e-91
UNIPROTKB|F1N4Z6560 LOC510716 "Uncharacterized pro 0.530 0.514 0.431 3.4e-90
DICTYBASE|DDB_G0275815629 nramp2 "putative manganese tra 0.930 0.802 0.388 4e-90
TAIR|locus:2158242512 NRAMP4 "natural resistance ass 0.869 0.921 0.412 3.2e-88
TAIR|locus:2025677 NRAMP1 "natural resistance-associated macrophage protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2163 (766.5 bits), Expect = 4.6e-224, P = 4.6e-224
 Identities = 424/543 (78%), Positives = 477/543 (87%)

Query:     1 MATSATGQPQFIASTGGNRSFSNAPLIKNEDADQIVVPDKTSWKNLFAYIGPGFLVSIAY 60
             MA + +G+ QFI+S+GGNRSFSN+PLI+N D++QI+V +K SWKN FAY+GPGFLVSIAY
Sbjct:     1 MAATGSGRSQFISSSGGNRSFSNSPLIENSDSNQIIVSEKKSWKNFFAYLGPGFLVSIAY 60

Query:    61 IDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKV 120
             IDPGNFETDLQ+GA YKYELLWIILVASCAAL+IQSLAANLGVVTGKHLAE CR EY KV
Sbjct:    61 IDPGNFETDLQAGAHYKYELLWIILVASCAALVIQSLAANLGVVTGKHLAEQCRAEYSKV 120

Query:   121 PNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRK 180
             PNF+LWV+AEIA+VACDIPEVIGTAFALNMLF IPVWIGVLLTG STLILLALQ+YGVRK
Sbjct:   121 PNFMLWVVAEIAVVACDIPEVIGTAFALNMLFSIPVWIGVLLTGLSTLILLALQKYGVRK 180

Query:   181 LEFLIAFLVFTMAGCFFAELGYAKPEAKEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240
             LEFLIAFLVFT+A CFF EL Y+KP+  EVLHGLFVPQLKGNGATGLAISLLGAMVMPHN
Sbjct:   181 LEFLIAFLVFTIAICFFVELHYSKPDPGEVLHGLFVPQLKGNGATGLAISLLGAMVMPHN 240

Query:   241 LFLHSALVLSRKIPRSVRSIKEACRFYMIESGFALAVAFLINVSVISVSGAVCSSSNINP 300
             LFLHSALVLSRKIPRS   IKEACRFY+IESG AL VAFLINVSVISVSGAVC++ N++P
Sbjct:   241 LFLHSALVLSRKIPRSASGIKEACRFYLIESGLALMVAFLINVSVISVSGAVCNAPNLSP 300

Query:   301 EDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 360
             ED+A+C+DLDLNKASFLLRNV+G WSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR
Sbjct:   301 EDRANCEDLDLNKASFLLRNVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLR 360

Query:   361 LKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKV 420
             L+PWLRN LTRCLAI+PSLIVALIGGSAGAG+LIIIASMILSFELPFALVPLLKFTS K 
Sbjct:   361 LEPWLRNLLTRCLAIIPSLIVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSCKT 420

Query:   421 KMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMA 480
             KMG H N +AITA+TW+IG LIM IN+YYL +SFIK L H ++KL+ VVF GI GF+ +A
Sbjct:   421 KMGSHVNPMAITALTWVIGGLIMGINIYYLVSSFIKLLIHSHMKLILVVFCGILGFAGIA 480

Query:   481 VYLAGVAYLVLRKNKEASHLLALTTHENQHSTNESGNASLYSLPREDIASMQLPSRSGTV 540
             +YLA +AYLV RKN+ A+ LL          + +S N    +LPR+DI +MQLP R  T 
Sbjct:   481 LYLAAIAYLVFRKNRVATSLLI---------SRDSQNVE--TLPRQDIVNMQLPCRVSTS 529

Query:   541 DID 543
             D+D
Sbjct:   530 DVD 532
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0005381 "iron ion transmembrane transporter activity" evidence=IGI
GO:0034755 "iron ion transmembrane transport" evidence=IGI
GO:0005384 "manganese ion transmembrane transporter activity" evidence=IMP;IDA;TAS
GO:0015086 "cadmium ion transmembrane transporter activity" evidence=IDA
GO:0070574 "cadmium ion transmembrane transport" evidence=IDA
GO:0071421 "manganese ion transmembrane transport" evidence=IDA
GO:0006828 "manganese ion transport" evidence=RCA;TAS
GO:0006875 "cellular metal ion homeostasis" evidence=NAS
GO:0015691 "cadmium ion transport" evidence=RCA;TAS
GO:0015692 "lead ion transport" evidence=TAS
GO:0030001 "metal ion transport" evidence=TAS
GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0055071 "manganese ion homeostasis" evidence=IMP
GO:0000041 "transition metal ion transport" evidence=RCA
TAIR|locus:2200437 NRAMP6 "NRAMP metal ion transporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0D7E4 NRAMP1 "Metal transporter Nramp1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZG85 NRAT1 "Metal transporter NRAT1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBI9 SLC11A2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021115-1 slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1345279 Slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N4Z6 LOC510716 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275815 nramp2 "putative manganese transporter" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2158242 NRAMP4 "natural resistance associated macrophage protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S9N8NRAM6_ARATHNo assigned EC number0.79690.95390.9829nono
O77741NRAM1_PIGNo assigned EC number0.40940.84160.8494yesno
P41251NRAM1_MOUSENo assigned EC number0.38850.89870.8905yesno
Q9SAH8NRAM1_ARATHNo assigned EC number0.77900.97971.0yesno
Q653V6NRAM3_ORYSJNo assigned EC number0.73660.99070.9781yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_208000030
nramp transporter (541 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
PRK00701439 PRK00701, PRK00701, manganese transport protein Mn 1e-159
TIGR01197390 TIGR01197, nramp, NRAMP (natural resistance-associ 1e-130
pfam01566364 pfam01566, Nramp, Natural resistance-associated ma 1e-127
COG1914416 COG1914, MntH, Mn2+ and Fe2+ transporters of the N 1e-104
>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed Back     alignment and domain information 
 Score =  459 bits (1184), Expect = e-159
 Identities = 188/425 (44%), Positives = 272/425 (64%), Gaps = 12/425 (2%)

Query: 34  QIVVPDKTS-WKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAAL 92
            + V    S WK L A++GP FLV++ Y+DPGN+ T++Q G+Q+ Y LLW+IL+++  A+
Sbjct: 20  SVAVSSGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAM 79

Query: 93  IIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLF 152
           ++QSL+A LG+ TG+ LA+ CR+ YP+   + LW+ AE+AI+A D+ EVIG A AL +LF
Sbjct: 80  LLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139

Query: 153 KIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCFFAELGYAKPEAKEVLH 212
            IP+  G L+T   T ++L LQ+ G R LE +I  L+  +A  F  EL  A+P+   VL 
Sbjct: 140 GIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAAFIVELFLAQPDWAAVLK 199

Query: 213 GLFVPQ---LKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRSIKEACRFYMI 269
           G F+P    L    A  LA  +LGA VMPHNL+LHS+LV +R + R+    +EA RF  I
Sbjct: 200 G-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFTRI 258

Query: 270 ESGFALAVAFLINVSVISVSGAVCSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKL 329
           +S  AL +A  +N +++ ++ A   +S             D+  A  LL  +LG+ ++ L
Sbjct: 259 DSAIALTIAGFVNAAMLILAAAAFHASGHTDVA-------DIEDAYLLLSPLLGAAAATL 311

Query: 330 FAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAG 389
           F IALLASG SST+ GT AGQ VM+GFL LR+  W+R  +TR LA+VP+LIV L+GG   
Sbjct: 312 FGIALLASGLSSTVVGTLAGQIVMEGFLRLRIPLWVRRLITRGLAMVPALIVILLGGELD 371

Query: 390 AGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYY 449
             +L++++ ++LSF LPFAL+PLL FTS +  MG   N   +  I WII  LI+ +N+Y 
Sbjct: 372 PTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAWIIAVLIVALNIYL 431

Query: 450 LATSF 454
           L  +F
Sbjct: 432 LYQTF 436

Length = 439
>gnl|CDD|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein Back     alignment and domain information
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 543
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 100.0
PRK00701439 manganese transport protein MntH; Reviewed 100.0
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 100.0
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 100.0
PF01566358 Nramp: Natural resistance-associated macrophage pr 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 98.85
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.81
TIGR00813407 sss transporter, SSS family. have different number 98.78
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.75
PRK15419502 proline:sodium symporter PutP; Provisional 98.7
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.7
PRK11375484 allantoin permease; Provisional 98.65
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.64
PRK12488549 acetate permease; Provisional 98.61
PRK15132403 tyrosine transporter TyrP; Provisional 98.61
PRK09395551 actP acetate permease; Provisional 98.56
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.53
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.44
COG1457442 CodB Purine-cytosine permease and related proteins 98.44
PRK13629443 threonine/serine transporter TdcC; Provisional 98.4
PRK15049499 L-asparagine permease; Provisional 98.38
PRK11017404 codB cytosine permease; Provisional 98.37
PRK11387471 S-methylmethionine transporter; Provisional 98.36
PRK09664415 tryptophan permease TnaB; Provisional 98.29
PRK10483414 tryptophan permease; Provisional 98.27
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.24
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.19
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 98.18
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 98.16
PRK10249458 phenylalanine transporter; Provisional 98.13
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.11
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.1
TIGR00837381 araaP aromatic amino acid transport protein. aroma 98.1
PRK10238456 aromatic amino acid transporter; Provisional 98.09
TIGR00908442 2A0305 ethanolamine permease. The three genes used 98.07
TIGR00814397 stp serine transporter. The HAAAP family includes 98.07
PRK10484523 putative transporter; Provisional 98.04
PRK11357445 frlA putative fructoselysine transporter; Provisio 97.98
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.94
TIGR00907482 2A0304 amino acid permease (GABA permease). 97.92
COG3949349 Uncharacterized membrane protein [Function unknown 97.9
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 97.87
TIGR00913478 2A0310 amino acid permease (yeast). 97.87
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 97.81
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 97.8
PRK11021410 putative transporter; Provisional 97.7
PRK10644445 arginine:agmatin antiporter; Provisional 97.59
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.58
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.56
TIGR00911501 2A0308 L-type amino acid transporter. 97.54
COG4147529 DhlC Predicted symporter [General function predict 97.5
TIGR00909429 2A0306 amino acid transporter. 97.42
COG0814415 SdaC Amino acid permeases [Amino acid transport an 97.26
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 97.24
PRK10197446 gamma-aminobutyrate transporter; Provisional 97.19
PRK10580457 proY putative proline-specific permease; Provision 97.08
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 97.07
PRK10746461 putative transport protein YifK; Provisional 97.06
PRK10836489 lysine transporter; Provisional 97.04
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 97.01
PRK10655438 potE putrescine transporter; Provisional 96.95
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 96.8
PRK15433439 branched-chain amino acid transport system 2 carri 96.76
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.75
TIGR00930 953 2a30 K-Cl cotransporter. 96.71
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 96.62
KOG1289550 consensus Amino acid transporters [Amino acid tran 96.57
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 96.53
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.16
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 96.06
TIGR00906557 2A0303 cationic amino acid transport permease. 96.02
COG0531466 PotE Amino acid transporters [Amino acid transport 95.21
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.06
COG1966575 CstA Carbon starvation protein, predicted membrane 94.96
COG0833541 LysP Amino acid transporters [Amino acid transport 94.65
PRK15238496 inner membrane transporter YjeM; Provisional 94.21
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 94.09
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 93.36
TIGR00912359 2A0309 spore germination protein (amino acid perme 88.26
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 87.07
KOG1286554 consensus Amino acid transporters [Amino acid tran 84.13
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-113  Score=894.92  Aligned_cols=457  Identities=51%  Similarity=0.810  Sum_probs=420.8

Q ss_pred             cCCcchHHHHHHhhhHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhh
Q 009128           37 VPDKTSWKNLFAYIGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNE  116 (543)
Q Consensus        37 ~~~~~~~r~~l~~lGPG~Lva~a~idpGni~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~  116 (543)
                      .+++++|||+|+|+|||||||+||+||||++||+|+||++||+|||++++++++++++|++++|+|+||||||+|.||++
T Consensus        19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~   98 (503)
T KOG1291|consen   19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE   98 (503)
T ss_pred             CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 009128          117 YPKVPNFILWVLAEIAIVACDIPEVIGTAFALNMLFKIPVWIGVLLTGFSTLILLALQQYGVRKLEFLIAFLVFTMAGCF  196 (543)
Q Consensus       117 y~~~~~~~lwi~~~laii~~di~eviG~Aial~lLfgipl~~gvlit~~~~~~lL~l~~yg~rklE~~~~~Lv~im~~~F  196 (543)
                      |||+.|+.+|+++|+|++++|++||+|+|+|+|+|+++|+|+||+||++|+++++++.|||.||+|.++++|+.+|++||
T Consensus        99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai~F  178 (503)
T KOG1291|consen   99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAISF  178 (503)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCHHhhhccccccccCC--CChHHHHHHHhcccchhHHHHHHHHHHhhccCCCCh-hhHHHHHHHHHHHHHH
Q 009128          197 FAELGYAKPEAKEVLHGLFVPQLKG--NGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSV-RSIKEACRFYMIESGF  273 (543)
Q Consensus       197 ~~~~~~~~P~~~~v~~G~~iP~~~~--~~~~~~avaliGatimP~nl~lhS~lv~~r~~~~~~-~~vk~a~~~~~~d~~i  273 (543)
                      .+|+..+||+.+|++.|.|+|++++  .+.+++++|++||+|||||+|+||++||+|+.|++. ++++|+++|+.+|+.+
T Consensus       179 ~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies~i  258 (503)
T KOG1291|consen  179 GVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIESAI  258 (503)
T ss_pred             heeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHHHH
Confidence            9999999999999999999999996  346899999999999999999999999999999975 4699999999999999


Q ss_pred             HHHHHHHHHHHHHHHH-HhhhccCCC-CC-----CCcccccccchHhHHHHHHHhhhHHHHHHHHHHHHHHhhHhHhhhh
Q 009128          274 ALAVAFLINVSVISVS-GAVCSSSNI-NP-----EDQASCKDLDLNKASFLLRNVLGSWSSKLFAIALLASGQSSTITGT  346 (543)
Q Consensus       274 al~vs~lIn~~iviv~-A~vl~~~g~-~~-----~~~~~~~~~~l~~a~~~L~~~lG~~a~~lfaigllaAg~sStit~t  346 (543)
                      ++.++|.||.+++.++ |..+++... ..     .+.++..+.|+.+++.+|++.+|+++.++|++|+++|||||++|||
T Consensus       259 al~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~~a~~Ifai~lLasGQSstitgT  338 (503)
T KOG1291|consen  259 ALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGPAALYIFAIGLLASGQSSTITGT  338 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhccHHHHHHHHHHHHCCCcccceee
Confidence            9999999999999998 776665421 11     1223345678999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcccCCcccchhhHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhHHHHHHHHHHHHhcCcccccCCC
Q 009128          347 YAGQYVMQGFLDLRLKPWLRNFLTRCLAIVPSLIVALIGGSAGAGQLIIIASMILSFELPFALVPLLKFTSSKVKMGMHA  426 (543)
Q Consensus       347 ~ag~~vm~gfl~~~~~~~~r~l~tr~iaivpal~v~~~~g~~~~~~Ll~~aqvi~s~~LPfalipll~~~s~k~iMG~~~  426 (543)
                      |+||++||||+|+++++|.||++||++||+|++++++..|.++..++++++|+++|++|||+++|+++|+|+|++||+|+
T Consensus       339 yaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~~~~  418 (503)
T KOG1291|consen  339 YAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMGVFK  418 (503)
T ss_pred             eeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 009128          427 NSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYLVLRKNKEASHL  500 (543)
Q Consensus       427 ns~~~~il~wi~~~~i~~lni~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~~~~~~~~  500 (543)
                      |+...+..+|....++..+|.|++++ +.....+++..      +...+....+.|+++++||+.++.+.....
T Consensus       419 ~~~~~~~~~~~~~~~~~~in~y~~v~-~~~~~~~~~~~------~~~~~~~~~~~y~~~i~yL~~~~l~~~~~~  485 (503)
T KOG1291|consen  419 NGLVTEELTWTVAALVLGINGYFLVS-FFWSLVGKHSK------IVVTVNVWTLAYLAFILYLAATCLNAYSII  485 (503)
T ss_pred             cCccceeeeehheeeeeeeeeEEeee-ehhhhcCCcee------eehhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999995 44555543322      122344566789999999999986655443

>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query543
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 87/595 (14%), Positives = 173/595 (29%), Gaps = 195/595 (32%)

Query: 25  PLIKNEDADQIV-VPDKTS------W------KNLFA-YIGP------GFLVS-IA--YI 61
            ++  E+ D I+   D  S      W      + +   ++         FL+S I     
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 62  DPG-----------NFETDLQSGAQY---KYELLWIILVASCAALIIQSLAANLGVV--- 104
            P                D Q  A+Y   + +    +  A      +  L     V+   
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA------LLELRPAKNVLIDG 157

Query: 105 ---TGKH-LA-EHCRNE--YPKVPNFILWVLAEIAIVACDIPEVIGTAFALNML------ 151
              +GK  +A + C +     K+   I W    + +  C+ PE +     L ML      
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNLKNCNSPETV-----LEMLQKLLYQ 208

Query: 152 ------------FKIPVWIGVLLTGFSTLILLALQQY--------GVRKLEFLIAF---- 187
                         I + I  +        LL  + Y         V+  +   AF    
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 188 --LVFTMAGCFFAEL---------------GYAKPEAKEVLHGLFV-------PQ--LKG 221
             L+ T        L                    E K +L   ++       P+  L  
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTT 325

Query: 222 NGATGLAISLLGAMVMPH----NLFLHSAL-VLSRKIPRSVRSIK--EACRFYMIESGFA 274
           N      +S++   +       + + H     L+  I  S+  ++  E  + +       
Sbjct: 326 N---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----R 377

Query: 275 LAVAFLINVSV-ISVSGAV-CSSSNINPEDQASCKDLDLNKASFLLRNVLGSWSSKLFAI 332
           L+V F  +  +   +   +       +     +     L+K S + +    S  S + +I
Sbjct: 378 LSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTIS-IPSI 431

Query: 333 ALLASGQSSTITGTYA---GQYVMQGFLDL--RLKPWLRNFLTRCLAIVPSLIVALIG-- 385
            L    +       +      Y +    D    + P+L  +             + IG  
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----------FYSHIGHH 480

Query: 386 -GSAGAGQLIIIASMI-LSFELPFALVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIM 443
             +    + + +  M+ L F          +F   K++     +S A  A   I+ + + 
Sbjct: 481 LKNIEHPERMTLFRMVFLDF----------RFLEQKIR----HDSTAWNASGSIL-NTLQ 525

Query: 444 IINVY--Y----------LATSFIKFLFHGNLKLVEVVFLGIFGFSAM----AVY 482
            +  Y  Y          L  + + FL      L+   +  +   + M    A++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.15
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 98.75
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 98.6
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 98.54
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.35
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.2
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 90.68
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
Probab=99.15  E-value=2.7e-07  Score=100.42  Aligned_cols=133  Identities=11%  Similarity=0.041  Sum_probs=83.3

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhCCCchHHHHHHHHH
Q 009128           54 FLVSIAYIDPGNFETDLQSGAQYK---YELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNEYPKVPNFILWVLAE  130 (543)
Q Consensus        54 ~Lva~a~idpGni~t~~qaGA~~G---y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~lwi~~~  130 (543)
                      .+...+-+..+++.......+  |   ++.++.+++++++..++-.+.++.|..+|.+-.+.+|..||++...+.-+...
T Consensus        34 ~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~  111 (501)
T 2jln_A           34 AIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKA  111 (501)
T ss_dssp             HHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHH
Confidence            344445555555554433332  3   34556778888888888889999999999999999999999987765444443


Q ss_pred             HHHHHhhhhhHHHHHHHHHHh----hcch-hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 009128          131 IAIVACDIPEVIGTAFALNML----FKIP-VWIGVLLTGFSTLILLALQQYGVRKLEFLIAFL  188 (543)
Q Consensus       131 laii~~di~eviG~Aial~lL----fgip-l~~gvlit~~~~~~lL~l~~yg~rklE~~~~~L  188 (543)
                      +..++-..-+....+.+++.+    +|.+ .+++.++..+.++.+.+.+-...+++|++...+
T Consensus       112 i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~  174 (501)
T 2jln_A          112 LLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPV  174 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            443443333333344444444    3776 677877766655554444433356667765443
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query543
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 95.61
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.61  E-value=1.4  Score=44.68  Aligned_cols=58  Identities=14%  Similarity=0.131  Sum_probs=31.4

Q ss_pred             hhcCCChHHHH-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhh
Q 009128           59 AYIDPGNFETD-----LQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCRNE  116 (543)
Q Consensus        59 a~idpGni~t~-----~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~  116 (543)
                      ..+|.||+=--     -..|..|=.--+-.+++-.+..+.++...+|++-....+-...+...
T Consensus        17 ~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~   79 (509)
T d2a65a1          17 NAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL   79 (509)
T ss_dssp             HHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH
T ss_pred             HHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHH
Confidence            44899998532     23344433333334444455556677777777665555555544333