Citrus Sinensis ID: 009130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540---
Protein Sequence
MRMEERLSTNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQHSSTT
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHHHHcccHHEEEccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccHHHcccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mrmeerlstnSKWIATVASIWIQCSVGTTYTFSIYSSTLkstqnydqSTLERVAVFKDMGGSAGILSGLLFSYVTLnhhhhqtrtrflrgpwvvhFTGAILCFTGYFLVWASVvgllprpvpvplmCLFIFTAAHAqnffntgnivtGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRiygtnsvddkkHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRvaitadredamtspklstpqqdplayheladdeskvtaafddkilkDEEDMNLLQAMCTGNFWFLCIATLcgmgsgiatMNNIAQVGESLHYSTTEINSLISLWSIWNFFgrfgagygsdvflhklgwarPIFMVITLVAMSIGHIAiasgfpgnlfVGTMIVGVCygsqwslmptitseifgvrhmgTIFNtisiacpvgsyicsVRIIGRiydrvasgedhtcygthCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQHSSTT
Flexible Loop (DISEMBL)
mrmeerlstnsKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADredamtspklstpqqdPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQHSSTT
Low Complexity Region (SEG)
MRMEERLSTNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASvvgllprpvpvplmclFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYIlvlallptlvsllFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARiitfiilllllASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQHSSTT
Disordered region (IsUnstruct)
***********KWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVT**********RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITA********************************AAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRL******
Disordered Region (DISOPRED)
*************IATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTS***********************************EDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYN*************
Disordered Region (DISEMBL)
**********SKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLN********RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADRE**************PLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQHSSTT
Disordered Region (DISPRO)
*******STNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAM*****************************D*K***DEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQ*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRMEERLSTNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQHSSTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	543	2.2.26 [Sep-21-2011]
Q6CGU8	486	Probable transporter MCH1	yes	no	0.281	0.314	0.286	1e-07
Q9P3K8	598	Probable transporter MCH1	N/A	no	0.202	0.183	0.282	0.0002
Q4WVT3	619	Probable transporter mch1	no	no	0.202	0.177	0.293	0.0007
Q5AXV1	615	Probable transporter mch1	no	no	0.130	0.115	0.36	0.0009

>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 91/171 (53%), Gaps = 18/171 (10%)

Query: 350 NNIAQVGESLHYSTTEINSL---ISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM-VI 405
           NN+  + +++     +  S    +SL++ ++   R   G+ S+     +  +RP+ + VI
Sbjct: 293 NNMGAILDTVTVENADSPSFSTHVSLFATFSTVSRLVVGFSSEAMESHV--SRPVLLSVI 350

Query: 406 TLVAMSIGHIAIASG----FPGNLF--VGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTI 459
            LVA  I H+ + SG    F    +  V T++ G  YGS ++L+PTI ++++G+ ++GTI
Sbjct: 351 ALVAACI-HLMVPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTI 409

Query: 460 FNTISIACPVGSYICSVRIIGRIYD---RVASGE-DHTCYGTHCFMLSFMI 506
           + +  +A  VGS    + +  ++YD    V  G     C G HC+ L+F+I
Sbjct: 410 WGSFILALAVGSLGYGL-LFAKVYDAASEVGVGSMSQVCSGVHCYGLTFVI 459

Probable transporter.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q9P3K8|MCH1_NEUCR Probable transporter MCH1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mch-1 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 14/124 (11%)

Query: 398 ARPIFMVITLVAMSIGHIAIASGFPGN----LFVGTMIVGVCYGSQWSLMPTITSEIFGV 453
           +R  F++   V +S+G   +ASG+  N     +V + +VG  YG+ +SL P I + I+GV
Sbjct: 449 SRVSFLLFFAVTLSVGLATLASGWIQNHGERFWVASGLVGAGYGAVFSLTPIIITVIWGV 508

Query: 454 RHMGTIFNTISIACPVGSYICSVRIIGRIY----DRVASG-----EDHTCYGTHCFMLSF 504
            +  T +  +++   +G+    + +   +Y    ++ AS      ED  CYG+ C+  +F
Sbjct: 509 ENFATNWGIVAMFPALGATFWGL-VYSAVYQSGVEKAASNGQGGEEDQFCYGSECYASAF 567

Query: 505 MIMA 508
             MA
Sbjct: 568 WAMA 571

Probable transporter.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q4WVT3|MCH1_ASPFU Probable transporter mch1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mch1 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 6/116 (5%)

Query: 422 PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGR 481
           PG   V T ++G+ YGS +SL+P I S ++GV + GT +  +++    G+ +  V I  R
Sbjct: 506 PGLSHVTTALIGLGYGSAFSLVPIIISVVWGVENFGTNWGIVAMVPAAGAAMWGV-IYSR 564

Query: 482 IYDRVASG----EDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVV 533
            Y     G     D  C+G  C+   + +   ++ + ++VA++L  R  R    VV
Sbjct: 565 GYQDATDGGNGSPDGQCHGWRCYGF-WAVGCTLSVWVAVVAWILAWRGWRRRGVVV 619

Probable transporter.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5AXV1|MCH1_EMENI Probable transporter mch1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mch1 PE=3 SV=2

 Score = 45.8 bits (107), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 429 TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS 488
           T +VG+ YGS +SL+P I S ++GV + GT +  +++    G+ +  V I  R Y   A 
Sbjct: 510 TALVGLGYGSIFSLVPIIISVVWGVENFGTNWGIVAMFPAAGAAMWGV-IYSRAYQSAAD 568

Query: 489 G---EDHTCYGTHCF 500
           G   +D  C+G  CF
Sbjct: 569 GSPTDDGQCHGWKCF 583

Probable transporter.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
255540871	551	conserved hypothetical protein [Ricinus	0.974	0.960	0.619	0.0
359491754	559	PREDICTED: uncharacterized protein LOC10	0.976	0.948	0.603	0.0
297734047	612	unnamed protein product [Vitis vinifera]	0.959	0.851	0.618	0.0
224133334	530	predicted protein [Populus trichocarpa]	0.959	0.983	0.629	0.0
29824365	533	unknown protein [Arabidopsis thaliana] g	0.957	0.975	0.589	1e-179
15221382	533	nodulin-like and major facilitator domai	0.957	0.975	0.587	1e-179
297839353	530	nodulin family protein [Arabidopsis lyra	0.965	0.988	0.580	1e-174
225456622	537	PREDICTED: uncharacterized protein LOC10	0.979	0.990	0.577	1e-172
356507186	534	PREDICTED: uncharacterized protein LOC10	0.950	0.966	0.557	1e-171
356508612	557	PREDICTED: uncharacterized protein LOC10	0.970	0.946	0.527	1e-170

>gi|255540871|ref|XP_002511500.1| conserved hypothetical protein [Ricinus communis] gi|223550615|gb|EEF52102.1| conserved hypothetical protein [Ricinus communis]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/557 (61%), Positives = 422/557 (75%), Gaps = 28/557 (5%)

Query: 5   ERLSTNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAG 64
           ER    +KWIATVASIWIQCS G +YTF IYSS LKS+QNYDQSTL+ V+VFKD+G +AG
Sbjct: 2   EREMLKTKWIATVASIWIQCSCGASYTFGIYSSILKSSQNYDQSTLDTVSVFKDIGANAG 61

Query: 65  ILSGLLFSYVTLNHHHHQTRTRFLR---GPWVVHFTGAILCFTGYFLVWASVVGLLPRPV 121
           ++SGLL+S VTL     Q   R+L     PWVVH  GAI CF GYFL+WA VVGL+PRP 
Sbjct: 62  VISGLLYSAVTL-----QRNRRWLGIFGSPWVVHAAGAIQCFFGYFLMWACVVGLIPRP- 115

Query: 122 PVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTV 181
           PV +MCLF++ AAHAQ FFNT N+V+GV NF  Y GTIVGI+KGF+GLSGA+L Q Y TV
Sbjct: 116 PVAVMCLFMWVAAHAQTFFNTANVVSGVHNFADYGGTIVGIMKGFLGLSGAILIQFYNTV 175

Query: 182 CNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITV 241
           C G+PST+IL+LA+ PTL+SLL M+ VR Y T+S DDKKHLNAFSAVA+T+AAY  +  +
Sbjct: 176 CKGDPSTFILLLAVTPTLISLLLMTLVRNYDTSSKDDKKHLNAFSAVALTIAAYLTINII 235

Query: 242 MENLLTFSLWARIITFIILLLLLASPLRVAITADRE-----------------DAMTSPK 284
            EN+    LW R++TF++LLLL+ SPL +A  A RE                 + M S +
Sbjct: 236 FENIFILPLWIRLVTFLVLLLLVGSPLAIATRALRESSDRYAQALLEERGYKPNTMMSSE 295

Query: 285 LSTPQQDPLAYHELADDES-KVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMG 343
           L T ++DP  Y  L  +E  +  A  D +   DEED+NLLQA+ TGNFW L IA  CG+G
Sbjct: 296 LPT-EEDPNDYRALLSNEDLEAKATSDHRSSSDEEDLNLLQAVSTGNFWLLFIAMFCGLG 354

Query: 344 SGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM 403
           SG+AT+NNI+QVG+SL Y+    NSL+SL SIWNF GRFGAG+ SD+FLH+ GWARP+F+
Sbjct: 355 SGLATINNISQVGQSLGYTAISRNSLVSLLSIWNFLGRFGAGFISDIFLHRGGWARPLFV 414

Query: 404 VITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTI 463
            ITL  ++IGHI IASGFP NL++G+++VG+ YGSQWSLMPTITSEIFGV HMGTIFNTI
Sbjct: 415 AITLATLAIGHIVIASGFPYNLYLGSVLVGISYGSQWSLMPTITSEIFGVGHMGTIFNTI 474

Query: 464 SIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL 523
           +IA P+GSYI SVR+IG IYD+ ASGED+ CYGT CFMLSF+IMA VAFFG LVA +LF 
Sbjct: 475 AIASPLGSYIFSVRVIGYIYDKAASGEDNLCYGTRCFMLSFLIMASVAFFGVLVALVLFF 534

Query: 524 RTRRFYNQVVIRRLQHS 540
           RTRRFY  VV+RR+ HS
Sbjct: 535 RTRRFYQAVVLRRVHHS 551

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491754|ref|XP_002266530.2| PREDICTED: uncharacterized protein LOC100244916 [Vitis vinifera]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/552 (60%), Positives = 417/552 (75%), Gaps = 22/552 (3%)

Query: 10  NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
           +SKWI TVASIWIQC+ G +Y F +YSS LKS+Q+YDQ+TL+ V+VFKD+G +AG+LSGL
Sbjct: 3   SSKWITTVASIWIQCTCGGSYAFGVYSSVLKSSQSYDQATLDTVSVFKDIGANAGVLSGL 62

Query: 70  LFSYVTLN------HHHHQTRTRFL---RGPWVVHFTGAILCFTGYFLVWASVVGLLPRP 120
           L+S V ++        H  +   +L    GPWVVH  GAI CF GYFL+W SV G++ RP
Sbjct: 63  LYSAVAVHRRRRRRDSHQASSVSYLLSFGGPWVVHVAGAIQCFAGYFLIWLSVTGVIHRP 122

Query: 121 VPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKT 180
             VPLMCLF+F AAHAQ FFNT N+VT V NF  Y GTIVGI+KGF+GLSGAVL QVY  
Sbjct: 123 A-VPLMCLFMFIAAHAQTFFNTANVVTAVQNFPDYGGTIVGIMKGFLGLSGAVLIQVYDA 181

Query: 181 VCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVIT 240
           +  GNPS +IL+LALLPT +SLL M  VRI   ++  +KK LN FS VA+ +AAY M++ 
Sbjct: 182 LFEGNPSIFILMLALLPTFISLLLMCLVRIDERDTQGNKKQLNRFSTVALLVAAYLMIVI 241

Query: 241 VMENLLTFSLWARIITFIILLLLLASPLRVAITADREDA-MTSPKLSTPQQDPL------ 293
           ++EN+ TF LWARI T I+LLLLLASPL +A  A ++++ ++S  L + ++ PL      
Sbjct: 242 ILENIFTFPLWARIATLILLLLLLASPLGIAANALKDESEISSQGLVSSERSPLLSDNGS 301

Query: 294 ----AYHELADDESKVTAAFDD-KILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT 348
                +   A D  +  AA +D  +L+DEED+N++QAM TGNFW L IA  CGMGSG+AT
Sbjct: 302 LQSERWSSAAGDPKEHHAADEDTPMLQDEEDLNVVQAMRTGNFWLLFIAMACGMGSGLAT 361

Query: 349 MNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV 408
           +NNI+Q+GESL Y+T EIN+L+SLWSIWNF GRFGAGY SD+ LH+ GWARP+ MVITL 
Sbjct: 362 INNISQIGESLGYTTVEINTLVSLWSIWNFLGRFGAGYVSDILLHRRGWARPLLMVITLA 421

Query: 409 AMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACP 468
            M+IGH+ IASGF GNL+VG++IVGVCYGSQWSLMPTITSE+FGV HMGTIFNTI+IA P
Sbjct: 422 TMTIGHVIIASGFAGNLYVGSVIVGVCYGSQWSLMPTITSELFGVGHMGTIFNTIAIASP 481

Query: 469 VGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRF 528
           VGSY+ SVR+IG IYD+ ASG+ ++C GTHCFMLSF+I+  V  FGSLVA  LF RT+RF
Sbjct: 482 VGSYLLSVRVIGYIYDKEASGKQNSCSGTHCFMLSFLIIGCVTLFGSLVASALFFRTKRF 541

Query: 529 YNQVVIRRLQHS 540
           Y  VV+RRL  S
Sbjct: 542 YKLVVLRRLNLS 553

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734047|emb|CBI15294.3| unnamed protein product [Vitis vinifera]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/532 (61%), Positives = 409/532 (76%), Gaps = 11/532 (2%)

Query: 10  NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
           +SKWI TVASIWIQC+ G +Y F +YSS LKS+Q+YDQ+TL+ V+VFKD+G +AG+LSGL
Sbjct: 3   SSKWITTVASIWIQCTCGGSYAFGVYSSVLKSSQSYDQATLDTVSVFKDIGANAGVLSGL 62

Query: 70  LFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLF 129
           L+S  +       +      GPWVVH  GAI CF GYFL+W SV G++ RP  VPLMCLF
Sbjct: 63  LYSAAS-----SVSYLLSFGGPWVVHVAGAIQCFAGYFLIWLSVTGVIHRPA-VPLMCLF 116

Query: 130 IFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY 189
           +F AAHAQ FFNT N+VT V NF  Y GTIVGI+KGF+GLSGAVL QVY  +  GNPS +
Sbjct: 117 MFIAAHAQTFFNTANVVTAVQNFPDYGGTIVGIMKGFLGLSGAVLIQVYDALFEGNPSIF 176

Query: 190 ILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFS 249
           IL+LALLPT +SLL M  VRI   ++  +KK LN FS VA+ +AAY M++ ++EN+ TF 
Sbjct: 177 ILMLALLPTFISLLLMCLVRIDERDTQGNKKQLNRFSTVALLVAAYLMIVIILENIFTFP 236

Query: 250 LWARIITFIILLLLLASPLRVAITADREDA-MTSPKLSTPQQDPLAYHELADDESKVTAA 308
           LWARI T I+LLLLLASPL +A  A ++++ ++S  L + ++ PL    L D +    A 
Sbjct: 237 LWARIATLILLLLLLASPLGIAANALKDESEISSQGLVSSERSPL----LRDPKEHHAAD 292

Query: 309 FDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINS 368
            D  +L+DEED+N++QAM TGNFW L IA  CGMGSG+AT+NNI+Q+GESL Y+T EIN+
Sbjct: 293 EDTPMLQDEEDLNVVQAMRTGNFWLLFIAMACGMGSGLATINNISQIGESLGYTTVEINT 352

Query: 369 LISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVG 428
           L+SLWSIWNF GRFGAGY SD+ LH+ GWARP+ MVITL  M+IGH+ IASGF GNL+VG
Sbjct: 353 LVSLWSIWNFLGRFGAGYVSDILLHRRGWARPLLMVITLATMTIGHVIIASGFAGNLYVG 412

Query: 429 TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS 488
           ++IVGVCYGSQWSLMPTITSE+FGV HMGTIFNTI+IA PVGSY+ SVR+IG IYD+ AS
Sbjct: 413 SVIVGVCYGSQWSLMPTITSELFGVGHMGTIFNTIAIASPVGSYLLSVRVIGYIYDKEAS 472

Query: 489 GEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQHS 540
           G+ ++C GTHCFMLSF+I+  V  FGSLVA  LF RT+RFY  VV+RRL  S
Sbjct: 473 GKQNSCSGTHCFMLSFLIIGCVTLFGSLVASALFFRTKRFYKLVVLRRLNLS 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133334|ref|XP_002321541.1| predicted protein [Populus trichocarpa] gi|222868537|gb|EEF05668.1| predicted protein [Populus trichocarpa]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/534 (62%), Positives = 417/534 (78%), Gaps = 13/534 (2%)

Query: 10  NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
           N+KWIATVASIWIQ SVG +YTF IYSS LKS+Q YDQSTL+ V+VFKD+G +AGILSGL
Sbjct: 5   NTKWIATVASIWIQSSVGASYTFGIYSSILKSSQGYDQSTLDTVSVFKDIGANAGILSGL 64

Query: 70  LFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLF 129
           L+S  TL   +++ R     GP VV   GAI  F GYF++WASVVGL+ R +PV +MC F
Sbjct: 65  LYSAFTL--QNNRRRLGVFAGPCVVLLAGAIQSFLGYFVMWASVVGLIRR-LPVAVMCFF 121

Query: 130 IFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY 189
            + AAHAQ F NT N+V+GV NFG Y GTIVGI+KGF+GLSGA+L Q Y+TVCNG+P T+
Sbjct: 122 TWMAAHAQTFSNTTNVVSGVHNFGDYGGTIVGIMKGFLGLSGAILIQFYQTVCNGDPGTF 181

Query: 190 ILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFS 249
           +L+LAL PTLVSLLFMS VR Y TN+ DDKK+LNAFSAV++ +AAY  +I ++EN+ + S
Sbjct: 182 LLLLALTPTLVSLLFMSLVRNYDTNTKDDKKYLNAFSAVSLIIAAYLTIIIILENISSLS 241

Query: 250 LWARIITFIILLLLLASPLRVAITADRED----AMTSPKLSTPQQDPLAYHELADDESKV 305
             ARIITF +LLLL+ASPL +A+ A RED    A    +    +Q+P+   E++      
Sbjct: 242 SLARIITFTVLLLLVASPLGIAVRAHREDSDRYAQALLEQRGSKQNPVISSEISK----- 296

Query: 306 TAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTE 365
            AA D++ L DE +MNLLQA+C+ NFW L IA  CG+GSG+A +NNI+Q+GESL Y+ TE
Sbjct: 297 -AASDNERLSDEGNMNLLQALCSVNFWLLFIAMFCGLGSGLAMINNISQIGESLGYTATE 355

Query: 366 INSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNL 425
            NSL+SL SIWNF GRFGAG+ SD+FLH+ GWARP+F+ +TL  M+IGHI +A+GF  NL
Sbjct: 356 RNSLVSLLSIWNFLGRFGAGFVSDIFLHRGGWARPLFVAVTLAIMTIGHIIVAAGFSKNL 415

Query: 426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDR 485
           ++G+++VGV YGSQWSLMPTITSEIFGV HMGTIFNTI+IA PVGSY  SVR+IG IYD+
Sbjct: 416 YLGSVLVGVAYGSQWSLMPTITSEIFGVGHMGTIFNTIAIASPVGSYTFSVRVIGFIYDK 475

Query: 486 VASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQH 539
           V SGE++TC+G+ CFMLSFMIMA VAFFG LVA LLF RTRRFY  VV RRLQ+
Sbjct: 476 VGSGENNTCFGSRCFMLSFMIMASVAFFGVLVALLLFFRTRRFYKSVVFRRLQN 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29824365|gb|AAP04143.1| unknown protein [Arabidopsis thaliana] gi|110739083|dbj|BAF01458.1| hypothetical protein [Arabidopsis thaliana]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 317/538 (58%), Positives = 404/538 (75%), Gaps = 18/538 (3%)

Query: 10  NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
            +KW+A  ASIWIQC+ G +YTF IYS+ LKSTQ+YDQSTL+ V+VFKD+G +AG+ SGL
Sbjct: 5   RTKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFSGL 64

Query: 70  LFSYVTLNHHHHQTRTRFLRG-PWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCL 128
           L++Y T N    +       G PWVV   GAI CF GYFL+WASV GL+ +P PVPLMCL
Sbjct: 65  LYTYATSNRLRGRGGGIGGAGGPWVVLAVGAIQCFAGYFLIWASVTGLIRKP-PVPLMCL 123

Query: 129 FIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST 188
           F+F AA +Q FFNT N+V+ V NF  Y GT VGI+KGF+GLSGA+L Q+Y+T+C G+P++
Sbjct: 124 FMFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDPAS 183

Query: 189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTF 248
           +IL+LA+ PT++SLL M  VRIY T+  DDKKHLN  SAV++ +AAY M+I +++N    
Sbjct: 184 FILLLAVTPTVLSLLVMPLVRIYETSVADDKKHLNGLSAVSLIIAAYLMIIIILKNTFGL 243

Query: 249 SLWARIITFIILLLLLASPLRVAITADREDAMT-------SPKLSTPQQDPLAYHELADD 301
           S WA I+T + LL++LA PL +A  A R D M        SP +S+P+    + ++ ++ 
Sbjct: 244 SSWANIVTLVCLLVMLALPLLIARRAQR-DGMEKTVPHDYSPLISSPKATT-SGNQSSEG 301

Query: 302 ESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHY 361
           +SKV A          ED+NLLQAM   +FW L +A +CGMGSG++T+NNI Q+GESL Y
Sbjct: 302 DSKVEAGL-------SEDLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRY 354

Query: 362 STTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGF 421
           S+ EINSL+SLWSIWNF GRFGAGY SD  LHK GW RP+ M  TL  MSIGH+ IASGF
Sbjct: 355 SSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGF 414

Query: 422 PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGR 481
            GNL+VG++IVGVCYGSQWSLMPTITSE+FG+RHMGTIFNTIS+A P+GSYI SVR+IG 
Sbjct: 415 QGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGY 474

Query: 482 IYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQH 539
           IYD+ ASGE +TCYG+HCF LSF+IMA VAFFG LVA +LF RT+  Y Q++++RL H
Sbjct: 475 IYDKTASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221382|ref|NP_177616.1| nodulin-like and major facilitator domain-containing protein [Arabidopsis thaliana] gi|5882744|gb|AAD55297.1|AC008263_28 Strong similarity to gb|AF031243 nodule-specific protein (Nlj70) from Lotus japonicus and is a member of the PF|00083 Sugar (and other) transporter family. EST gb|Z37715 comes from this gene [Arabidopsis thaliana] gi|332197510|gb|AEE35631.1| nodulin-like and major facilitator domain-containing protein [Arabidopsis thaliana]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/538 (58%), Positives = 404/538 (75%), Gaps = 18/538 (3%)

Query: 10  NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
            +KW+A  ASIWIQC+ G +YTF IYS+ LKSTQ+YDQSTL+ V+VFKD+G +AG+ SGL
Sbjct: 5   RTKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFSGL 64

Query: 70  LFSYVTLNHHHHQTRTRFLRG-PWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCL 128
           L++Y T N    +       G PWVV   GAI CF GYFL+WASV GL+ +P PVPLMCL
Sbjct: 65  LYTYATSNRLRGRGGGIGGAGGPWVVLAVGAIQCFAGYFLIWASVTGLIRKP-PVPLMCL 123

Query: 129 FIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST 188
           F+F AA +Q FFNT N+V+ V NF  Y GT VGI+KGF+GLSGA+L Q+Y+T+C G+P++
Sbjct: 124 FMFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDPAS 183

Query: 189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTF 248
           +IL+LA+ PT++SLL M  VRIY T+  DDKKHLN  SAV++ +AAY M+I +++N    
Sbjct: 184 FILLLAVTPTVLSLLVMPLVRIYETSVADDKKHLNGLSAVSLIIAAYLMIIIILKNTFGL 243

Query: 249 SLWARIITFIILLLLLASPLRVAITADREDAMT-------SPKLSTPQQDPLAYHELADD 301
           S WA I+T + LL++LA PL +A  A R D M        SP +S+P+    + ++ ++ 
Sbjct: 244 SSWANIVTLVCLLVMLALPLLIARRAQR-DGMEKTVPHDYSPLISSPKATT-SGNQSSEG 301

Query: 302 ESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHY 361
           +SKV A          E++NLLQAM   +FW L +A +CGMGSG++T+NNI Q+GESL Y
Sbjct: 302 DSKVEAGLS-------ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRY 354

Query: 362 STTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGF 421
           S+ EINSL+SLWSIWNF GRFGAGY SD  LHK GW RP+ M  TL  MSIGH+ IASGF
Sbjct: 355 SSVEINSLVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGF 414

Query: 422 PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGR 481
            GNL+VG++IVGVCYGSQWSLMPTITSE+FG+RHMGTIFNTIS+A P+GSYI SVR+IG 
Sbjct: 415 QGNLYVGSVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGY 474

Query: 482 IYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQH 539
           IYD+ ASGE +TCYG+HCF LSF+IMA VAFFG LVA +LF RT+  Y Q++++RL H
Sbjct: 475 IYDKTASGEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839353|ref|XP_002887558.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297333399|gb|EFH63817.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 308/531 (58%), Positives = 395/531 (74%), Gaps = 7/531 (1%)

Query: 10  NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
            +KW+A  ASIWIQC+ G +YTF IYS+ LKSTQ+YDQSTL+ V+VFKD+G +AG+ SGL
Sbjct: 5   RTKWVAMAASIWIQCTNGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFSGL 64

Query: 70  LFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLF 129
           L++Y T N    +        PWVV   GAI CF GYFL+WASV G + +P PVPLMCLF
Sbjct: 65  LYTYATSNRRRGRGGGAGG--PWVVLAIGAIQCFAGYFLIWASVTGRIRKP-PVPLMCLF 121

Query: 130 IFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY 189
           +F AA +Q FFNT N+V+ V NF  Y GT VGI+KGF+GLSGA+L Q+Y+T+C G+P+++
Sbjct: 122 MFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDPASF 181

Query: 190 ILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFS 249
           IL+LA+ PT++SLL M  VRIY T+  DDKKHLN  SAV++ +AAY M++ +++N +  S
Sbjct: 182 ILLLAVTPTVLSLLVMPLVRIYETSVADDKKHLNGLSAVSLIIAAYLMIVIILKNTVGLS 241

Query: 250 LWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAF 309
            WA ++T + L++LLA PL +A  A R D M  P  +  +  PL     A      ++  
Sbjct: 242 SWANVVTLVCLVVLLALPLLIARRAQR-DGMEKP--APHEYSPLISSPKATTSGNQSSEG 298

Query: 310 DDKILKD-EEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINS 368
           D +I     E++NLLQAM   +FW L +A +CGMGSG++T+NNI Q+GESL YS+ EINS
Sbjct: 299 DSRIDSGLSENLNLLQAMKNLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINS 358

Query: 369 LISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVG 428
           L+SLWSIWNF GRFGAGY SD  LHK GW RP+ M  TL  M+IGH+ IASGF GNL+VG
Sbjct: 359 LVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMTIGHLIIASGFQGNLYVG 418

Query: 429 TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS 488
           ++IVGVCYGSQWSLMPTITSE+FGVRHMGTIFNTIS+A P+GSYI SVR+IG IYD+ AS
Sbjct: 419 SVIVGVCYGSQWSLMPTITSELFGVRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTAS 478

Query: 489 GEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQH 539
            E +TCYG+HCF LSF+IMA VAFFG LVA +LF RT+  Y Q++++RL  
Sbjct: 479 AEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHR 529

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456622|ref|XP_002266496.1| PREDICTED: uncharacterized protein LOC100250053 [Vitis vinifera]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 309/535 (57%), Positives = 390/535 (72%), Gaps = 3/535 (0%)

Query: 5   ERLSTNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAG 64
           ER+   SKWIAT+ASIWIQCS G+ YTFSI+SS LKS+Q YDQSTL+ V+V KD+G +AG
Sbjct: 2   ERI--QSKWIATLASIWIQCSSGSLYTFSIFSSALKSSQGYDQSTLDTVSVVKDVGATAG 59

Query: 65  ILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVP 124
           +LSG L+S V + H   ++ + FLRGPWVV   GAI CF GYF +W SV G +PR  PVP
Sbjct: 60  VLSGFLYSAVAVPHRSRRSSSCFLRGPWVVIAVGAIQCFAGYFFLWLSVAGAIPRQ-PVP 118

Query: 125 LMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNG 184
           LMCLF+F  AHAQ FFNT N+VT V NF  +SGT+VGI+KGF+GLSGA+L Q+Y+ +  G
Sbjct: 119 LMCLFMFLTAHAQTFFNTANVVTAVHNFPDFSGTVVGIMKGFLGLSGAILIQLYQAIFKG 178

Query: 185 NPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMEN 244
           NP++Y+L+L L+ T+  LL M  VRIY T   D+KKHLN FS VA+ +A Y M + ++EN
Sbjct: 179 NPASYLLMLMLVTTVNPLLLMCLVRIYNTKEGDEKKHLNGFSLVALVVAGYLMALIILEN 238

Query: 245 LLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESK 304
           +LT    AR+ T ++LLLLLA PL V I A + +   + +    +++ L       D  K
Sbjct: 239 ILTLQFPARLFTLVLLLLLLAMPLAVTIKAQQSNFDGTSQTFLIEKNQLIDDPKQLDAEK 298

Query: 305 VTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTT 364
           +    D       E++NLLQAM T NFW L +A  CGMGSG+AT+NNI Q+G +  Y + 
Sbjct: 299 IGKGQDPAGYHLGENLNLLQAMGTCNFWCLFLAMACGMGSGLATVNNIGQIGGAFGYKSF 358

Query: 365 EINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGN 424
           E ++L+SLWSIWNF GRFG GY SD FLH  GWARP+FMVITL  MSIGH  IASG PG 
Sbjct: 359 ETSTLVSLWSIWNFLGRFGTGYVSDYFLHTRGWARPVFMVITLATMSIGHFVIASGMPGA 418

Query: 425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYD 484
           L+ G+++VGV YGSQWSLMPTITSEIFGV+H+GTIFNTI++A PVGSYI SVR++G IYD
Sbjct: 419 LYAGSVLVGVSYGSQWSLMPTITSEIFGVQHLGTIFNTITMASPVGSYIFSVRVVGYIYD 478

Query: 485 RVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQH 539
           + AS + + C GTHCFM+SF+IMA     G  VA +LFLRT+ FYNQVV+RRLQH
Sbjct: 479 KEASADGNKCTGTHCFMVSFLIMASATLLGCFVALILFLRTKSFYNQVVLRRLQH 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507186|ref|XP_003522351.1| PREDICTED: uncharacterized protein LOC100814668 [Glycine max]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/536 (55%), Positives = 392/536 (73%), Gaps = 20/536 (3%)

Query: 10  NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
           NSKW +TVASIWIQC+ G+ YTFSIYS T+KSTQ YDQSTLE V+V KD+G + G+LSGL
Sbjct: 11  NSKWGSTVASIWIQCTSGSLYTFSIYSQTIKSTQRYDQSTLEFVSVSKDIGVNVGVLSGL 70

Query: 70  LFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLF 129
           L+ ++           R   GPW++H  G+  CF GYFL+WA+V GLLP PVP+P+MCLF
Sbjct: 71  LYDFLA---------RRTTTGPWLLHLLGSAQCFLGYFLMWAAVAGLLP-PVPLPVMCLF 120

Query: 130 IFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY 189
           +F AAH Q+FFNT N+VTGV NF + SGTIVGI+KGF+GLSGA+L Q+Y T+ N  P +Y
Sbjct: 121 MFVAAHGQSFFNTSNVVTGVRNFPNNSGTIVGIIKGFLGLSGAILIQMYGTIFNNKPMSY 180

Query: 190 ILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFS 249
           +L LALLP + +LL M  VRI+ T   +++K+LN FS++A+ +AAY MV+ ++EN+ +  
Sbjct: 181 LLTLALLPPINTLLLMWFVRIHNTQEAEERKYLNMFSSMALVVAAYLMVVIILENIFSLQ 240

Query: 250 LWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAF 309
            W RI  F++L++LLAS L +A  A  ++   S +    +  PL      +D ++   A 
Sbjct: 241 SWVRIFIFVVLMVLLASLLCIAFEAHEKN---SGRSFLDEGSPLIVEPSPEDTTEKEDAR 297

Query: 310 DDKI------LKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYST 363
            D        L+  E++NL QA+ T NFW L ++  CGMGSG+AT+NN+ Q+GESL Y++
Sbjct: 298 KDSFNNQRTNLQLGENLNLFQAVKTVNFWVLFVSVACGMGSGLATVNNLGQIGESLGYTS 357

Query: 364 TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPG 423
            E  SL+SLWSIWNF GRFGAGY SD +LH  GWARP+FMVITL+ MSIGH+ IASG PG
Sbjct: 358 HETGSLVSLWSIWNFLGRFGAGYVSDYYLHTRGWARPLFMVITLLIMSIGHVVIASGLPG 417

Query: 424 NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIY 483
            L+ G+++VG+CYGSQWSLMPTITSEIFGV +MG+IFNTI+IA PVGSYI SVR++G IY
Sbjct: 418 ALYAGSILVGICYGSQWSLMPTITSEIFGVGNMGSIFNTITIASPVGSYIFSVRVVGYIY 477

Query: 484 DRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQH 539
           D+ A  + +TC GTHCFM SF+IMA  A  GSL A  LF RT+ FY QV++RR+Q+
Sbjct: 478 DKEA-WDGNTCIGTHCFMFSFLIMASAAILGSLSALGLFFRTKNFYGQVILRRIQN 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508612|ref|XP_003523049.1| PREDICTED: uncharacterized protein LOC100775628 [Glycine max]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/550 (52%), Positives = 391/550 (71%), Gaps = 23/550 (4%)

Query: 11  SKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLL 70
           ++W    A+IWIQ S G +YTFSIYSS LKSTQ YDQSTL+ V+VFKD+G + G+LSGLL
Sbjct: 7   NRWTGVAAAIWIQWSCGASYTFSIYSSVLKSTQGYDQSTLDTVSVFKDIGANFGVLSGLL 66

Query: 71  FSYVTLNHHHHQTRTRF----LRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLM 126
           +S V     H  + ++     L GPWVV   GA+ CF G+  +WASVVGL+  P PVP+M
Sbjct: 67  YSAVAPYTTHRASPSKSIWTSLSGPWVVVAAGAVQCFAGFIFIWASVVGLVSPP-PVPVM 125

Query: 127 CLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP 186
           C F + A++ Q F NT N+VTG+ NF  YSGTI+GI+KGF+GLSGA+L Q+Y T  +G+P
Sbjct: 126 CFFAWLASNGQTFLNTTNVVTGLRNFPEYSGTIIGIMKGFLGLSGAILIQIYHTFFDGDP 185

Query: 187 STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLL 246
           +TY+L+LA+LP+L+ +L M  +RIY  +  D KKHL+ FS V + + AY M I +++NL+
Sbjct: 186 ATYLLMLAVLPSLICVLLMFFLRIYEVHGSDYKKHLDGFSVVTVIIVAYLMFIIILQNLV 245

Query: 247 TFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQ---------------- 290
           +   W R+  F+IL++LLA+P  +AI A  E++    +  T ++                
Sbjct: 246 SLPNWGRMFAFVILMVLLATPFGIAIKAHWEESRKFSQSYTIERGSSTNKGTTSSSHSAS 305

Query: 291 -DPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATM 349
            D + YHEL  DE +V    DDK+ ++EE  NLLQAMCT +FW L +  + G+GSG+AT+
Sbjct: 306 VDQVEYHELPSDEGQVQVTSDDKLPREEEK-NLLQAMCTVDFWMLFVIMISGLGSGLATI 364

Query: 350 NNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVA 409
           NN++Q+G+SL YS  EIN+L+SLWS+WNF GRFG G+ SD  +H+ GW RP+ M +TL  
Sbjct: 365 NNMSQIGQSLGYSAIEINNLVSLWSMWNFLGRFGGGHVSDYIMHRKGWPRPLLMTVTLGI 424

Query: 410 MSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPV 469
           M +GH+ IASGF GNL++G ++VG+CYG+ WSLMPTITSEIFGV+HMGTIFNTI+ A P+
Sbjct: 425 MILGHLIIASGFQGNLYLGPVLVGICYGAHWSLMPTITSEIFGVKHMGTIFNTIAAASPL 484

Query: 470 GSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFY 529
           GSYI SVR++G IYD+ A  EDH+C+G +CFM SF I+A VAF   LV   LF RTRRFY
Sbjct: 485 GSYILSVRVVGYIYDKQADKEDHSCFGINCFMPSFFILAAVAFLAFLVGLALFFRTRRFY 544

Query: 530 NQVVIRRLQH 539
            QVV+RRL+H
Sbjct: 545 KQVVLRRLKH 554

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	543
TAIR|locus:2027284	533	AT1G74780 [Arabidopsis thalian	0.966	0.984	0.546	5.2e-152
TAIR|locus:2011241	526	AT1G18940 [Arabidopsis thalian	0.952	0.982	0.512	6.8e-143
TAIR|locus:1005716659	523	AT2G34355 [Arabidopsis thalian	0.952	0.988	0.520	3.4e-141
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.955	0.988	0.5	4e-138
TAIR|locus:2056103	601	AT2G39210 "AT2G39210" [Arabido	0.412	0.372	0.377	8.4e-79
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.948	0.892	0.320	2e-72
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.392	0.367	0.351	2.9e-70
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.392	0.364	0.337	2.6e-67
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.443	0.425	0.358	6.1e-64
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.941	0.935	0.294	1.2e-60

TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)]

 Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
 Identities = 290/531 (54%), Positives = 362/531 (68%)

Query:    11 SKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLL 70
             +KW+A  ASIWIQC+ G +YTF IYS+ LKSTQ+YDQSTL+ V+VFKD+G +AG+ SGLL
Sbjct:     6 TKWVAMTASIWIQCASGASYTFGIYSAVLKSTQSYDQSTLDTVSVFKDIGANAGVFSGLL 65

Query:    71 FSYVTLNHHHHQTR-TRFLRGPWVVHFTGAILCFTGYFLVWASXXXXXXXXXXXXXXXXF 129
             ++Y T N    +        GPWVV   GAI CF GYFL+WAS                F
Sbjct:    66 YTYATSNRLRGRGGGIGGAGGPWVVLAVGAIQCFAGYFLIWASVTGLIRKPPVPLMCL-F 124

Query:   130 IFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY 189
             +F AA +Q FFNT N+V+ V NF  Y GT VGI+KGF+GLSGA+L Q+Y+T+C G+P+++
Sbjct:   125 MFLAAQSQTFFNTANVVSAVENFADYGGTAVGIMKGFLGLSGAILIQLYETLCAGDPASF 184

Query:   190 IXXXXXXXXXXXXXFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFS 249
             I              M  VRIY T+  DDKKHLN  SAV++ +AAY M+I +++N    S
Sbjct:   185 ILLLAVTPTVLSLLVMPLVRIYETSVADDKKHLNGLSAVSLIIAAYLMIIIILKNTFGLS 244

Query:   250 LWARXXXXXXXXXXXASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAF 309
              WA            A PL +A  A R D M   K       PL     A      ++  
Sbjct:   245 SWANIVTLVCLLVMLALPLLIARRAQR-DGME--KTVPHDYSPLISSPKATTSGNQSSEG 301

Query:   310 DDKILKD-EEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINS 368
             D K+     E++NLLQAM   +FW L +A +CGMGSG++T+NNI Q+GESL YS+ EINS
Sbjct:   302 DSKVEAGLSENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINS 361

Query:   369 LISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVG 428
             L+SLWSIWNF GRFGAGY SD  LHK GW RP+ M  TL  MSIGH+ IASGF GNL+VG
Sbjct:   362 LVSLWSIWNFLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVG 421

Query:   429 TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS 488
             ++IVGVCYGSQWSLMPTITSE+FG+RHMGTIFNTIS+A P+GSYI SVR+IG IYD+ AS
Sbjct:   422 SVIVGVCYGSQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTAS 481

Query:   489 GEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQH 539
             GE +TCYG+HCF LSF+IMA VAFFG LVA +LF RT+  Y Q++++RL H
Sbjct:   482 GEGNTCYGSHCFRLSFIIMASVAFFGFLVAIVLFFRTKTLYRQILVKRLHH 532

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 1397 (496.8 bits), Expect = 6.8e-143, P = 6.8e-143
 Identities = 271/529 (51%), Positives = 360/529 (68%)

Query:    11 SKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLL 70
             +KW+A  ASIWIQCS G +YTF IYS+ LKSTQ+YDQSTL+ V+VFKD+GG+ G+LSGL+
Sbjct:     8 TKWMAMTASIWIQCSAGGSYTFGIYSAILKSTQSYDQSTLDTVSVFKDIGGNVGVLSGLV 67

Query:    71 FSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASXXXXXXXXXXXXXXXXFI 130
             ++  T N      R R   GPWVV   GAIL FTGYFL+WAS                F+
Sbjct:    68 YTAATFNRRRRDGRER-RGGPWVVILIGAILNFTGYFLMWASVTGLIKRPPVPVMCL-FM 125

Query:   131 FTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYI 190
             F AA +  F NT N+V+ + NF  Y GT VGI+KGFVGLSGA+L Q+Y+ VC G+P T+I
Sbjct:   126 FIAAQSLTFLNTANVVSSLENFADYGGTAVGIMKGFVGLSGAMLIQLYEVVCPGDPKTFI 185

Query:   191 XXXXXXXXXXXXXFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSL 250
                           M  VR+Y T++VD+KKHL+  S +++ +AAY M+  ++++ L+   
Sbjct:   186 LLLAIVPSLLSVLVMPLVRVYKTSTVDEKKHLDGLSTLSLIIAAYLMITIILKSTLSLPS 245

Query:   251 WARXXXXXXXXXXXASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFD 310
             WA            +SPL VA+ A R D++  P LS+       Y  L D+    T+  +
Sbjct:   246 WANAVTLAVLLVLLSSPLLVAVRAHR-DSIEKP-LSS------VYSPLVDNLEATTSG-E 296

Query:   311 DKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLI 370
               +L +++ +NLLQAMC  +FW L +A +CGMGSGI+T+NNI Q+GESL Y++ EINSL+
Sbjct:   297 ILMLDEDKSLNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLL 356

Query:   371 SLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTM 430
             +LW+IWNF GRFG GY SD  LH+ GW RP+ M  TL  M+IGH+ IASGF GNL+ G++
Sbjct:   357 ALWNIWNFIGRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLIIASGFQGNLYPGSI 416

Query:   431 IVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE 490
             IVG+CYGSQWSLMPTITSE+FGV+HMGTI+NTISIA P+GSYI SVR+IG IYDR   GE
Sbjct:   417 IVGICYGSQWSLMPTITSELFGVKHMGTIYNTISIASPMGSYIFSVRLIGYIYDRTIIGE 476

Query:   491 DHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQH 539
              +TCYG HCF L+++++A VAF G LV+ +L  RT+  Y Q+   ++ H
Sbjct:   477 GNTCYGPHCFRLAYVVIASVAFLGFLVSCVLVFRTKTIYRQI-FEKILH 524

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:1005716659 AT2G34355 [Arabidopsis thaliana (taxid:3702)]

 Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
 Identities = 278/534 (52%), Positives = 356/534 (66%)

Query:     5 ERLSTNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAG 64
             ER+  N+KW+A  ASIWIQ   G TYTF+IYSS LKS+Q+YDQSTL+ V+VFKD+GG+ G
Sbjct:     2 ERI--NTKWVAAAASIWIQSFSGATYTFAIYSSILKSSQSYDQSTLDFVSVFKDIGGTFG 59

Query:    65 ILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASXXXXXXXXXXXX 124
             I+SG L++ +T       +++R   GPWVV F G +  F G+F +WAS            
Sbjct:    60 IISGFLYTAMT-------SKSRGFGGPWVVVFVGLVQWFVGFFFIWASVVGLIAPPPVPL 112

Query:   125 XXXXFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNG 184
                 F+F A H+  FFNT N+VT   NF  Y GT VGI++GF+GLSGA+L Q+Y  VC G
Sbjct:   113 MCL-FVFLAGHSLPFFNTANVVTAARNFSQYGGTAVGIMQGFLGLSGAILIQLYHAVCGG 171

Query:   185 --NPSTYIXXXXXXXXXXXXXFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVM 242
               NP+T+I              M  VR+Y T ++ DKKHL+  SA++M +AAY MV+  +
Sbjct:   172 EGNPATFILLLAIVPTLVMFLAMPFVRVYETVTISDKKHLDGLSAISMIIAAYLMVVITV 231

Query:   243 ENLLTFSLWARXXXXXXXXXXXASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDE 302
             EN+L  S   +           ASPL VA+ A RE   T   L  P  D  A   L D  
Sbjct:   232 ENVLGLSRSMQIFSFILVLLLLASPLLVAVRALREKRQTLSSLDGPVLDTSA---LLDPP 288

Query:   303 SKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYS 362
             S       D ++   ED N+L+AM T NFW L +A LCGMGSG AT+NN+ Q+GESL YS
Sbjct:   289 SSNIFPDGDHLVA--EDSNILEAMSTVNFWLLFLAMLCGMGSGFATVNNMRQIGESLRYS 346

Query:   363 TTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFP 422
             + ++NSL+SLWSIWNF GRFGAGY SD FLHK  W RPIFM ITL  M+IGHI +ASG  
Sbjct:   347 SVQLNSLVSLWSIWNFLGRFGAGYVSDTFLHKHSWPRPIFMAITLGVMAIGHIIVASGVQ 406

Query:   423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI 482
             G+L+ G++++G+ YGSQWSLMPTITSEIFG+RHMGTI+ TISIA P+GSYI SV++IG  
Sbjct:   407 GSLYAGSVLIGMAYGSQWSLMPTITSEIFGIRHMGTIYFTISIAGPIGSYILSVKVIGYF 466

Query:   483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRR 536
             YD+VAS +D++C+G+ CF  SFMIMA VA FGSLVA +LF RT +FY  +V +R
Sbjct:   467 YDKVASEDDNSCFGSQCFRTSFMIMASVALFGSLVASVLFFRTHKFYKNLVAKR 520

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 1352 (481.0 bits), Expect = 4.0e-138, P = 4.0e-138
 Identities = 264/528 (50%), Positives = 343/528 (64%)

Query:    10 NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
             N+KW+A  ASIWIQ   G +YTF IYSS LKS+Q+YDQSTL+ V+V+KD+G + GILSGL
Sbjct:     5 NTKWVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGILSGL 64

Query:    70 LFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASXXXXXXXXXXXXXXXXF 129
              ++ V            F  GPW+V F G +  F GY  +W +                F
Sbjct:    65 FYTAVA---SRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVIPRPPVAMMCL-F 120

Query:   130 IFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY 189
             +F A H Q FFNT  +VT V NF  Y GT VGI+KG++GLSGA+L Q+Y   C G+P  Y
Sbjct:   121 MFFAGHCQPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRNY 180

Query:   190 IXXXXXXXXXXXXXFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFS 249
             I              M  VR Y T    DKKHLN  SA+++ +  Y MV+ ++EN++  S
Sbjct:   181 ILLLAVVPSLLILTLMPFVRTYDTVIAGDKKHLNGLSAISLIIVTYLMVVILVENIIGMS 240

Query:   250 LWARXXXXXXXXXXXASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAF 309
             +  +           ASPL VA+ A RE+      L  P  +         D  K+ ++ 
Sbjct:   241 MPMKICSFTFLLLLLASPLLVAVRAQREEEHRFLSLDFPVTERTTLL----DSPKLNSSS 296

Query:   310 DDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSL 369
             D K +    DMN+L+A+CT NFW L +A +CGMGSG+AT+NNI Q+GESL YST ++NSL
Sbjct:   297 DVKDVMTN-DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSL 355

Query:   370 ISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGT 429
             +SLWSIWNF GRFG+GY SD +LH  GW RP+FM ITL  M+IGHI +ASG  G+L++G+
Sbjct:   356 VSLWSIWNFLGRFGSGYISDTYLHSHGWPRPVFMAITLGLMAIGHIVMASGLLGSLYIGS 415

Query:   430 MIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASG 489
             ++VG+ YGSQWSLMPTITSEIFGV HMGTIF TISIA PVGSY  SV++IG +YD+VAS 
Sbjct:   416 LLVGLAYGSQWSLMPTITSEIFGVLHMGTIFYTISIASPVGSYFFSVKVIGYLYDKVASE 475

Query:   490 EDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRL 537
             +DH+CYG HCF  SF+IMA +A  GSLVA +L LRT++FY  +V +R+
Sbjct:   476 DDHSCYGNHCFRTSFLIMAAMALLGSLVALVLLLRTKKFYATLVAKRI 523

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
 Identities = 89/236 (37%), Positives = 148/236 (62%)

Query:   318 EDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWN 377
             +D  +LQA+ + +   L +AT+CG+G  +  ++N+ Q+G SL Y    +++ +SL SIWN
Sbjct:   332 DDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLVSIWN 391

Query:   378 FFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYG 437
             ++GR  +G  S++FL K  + RP+ + + L+    GH+ IA   PG L+V ++I+G C+G
Sbjct:   392 YYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIGFCFG 451

Query:   438 SQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS--------- 488
             +QW L+  I SEIFG+++  T++N  S+A P+GSY+ +VR+ G +YD  A          
Sbjct:   452 AQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKALGKT 511

Query:   489 ---GEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRRLQHSS 541
                G+D  C GT CF LSF+I+A V  FG LV+ +L +RT++FY   + ++ +  +
Sbjct:   512 RVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYKSDIYKKFREKA 567

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 179/559 (32%), Positives = 284/559 (50%)

Query:    10 NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGL 69
             N +W    AS  I    G TY F  YS  +KST  YDQ+TL  +  FKD+G + G+LSGL
Sbjct:    15 NGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGANVGVLSGL 74

Query:    70 LFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASXXXXXXXXXXXXXXXXF 129
             +            T T      W V   G+ + F GYF++W +                +
Sbjct:    75 IAEV---------TPT------WFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCL-Y 118

Query:   130 IFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY 189
             I   A++QNF NTG +VT V NF    G ++G+LKG+VGLSGA+ TQ+Y  +   +  + 
Sbjct:   119 ICIGANSQNFANTGALVTCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSL 178

Query:   190 IXXXXXXXXXXXXXFMSHVRIYGT-NSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTF 248
             I             F+  +R        ++      F  +++ LA + M + + E  + F
Sbjct:   179 ILLIAWLPAAVSLVFVYLIREKKVVRQRNELSVFYQFLYISIFLALFLMAMNIAEKQVHF 238

Query:   249 SLWARXXXXXXXXXXXASPLRVAITADRE--DAMTSP-------KLSTPQQD-PLAYHEL 298
             S  A              PL V++  + E  + M  P       K+  P+++  L   + 
Sbjct:   239 SKAAYAASATICCALLFVPLTVSVKQELEVWNMMKLPIEEPSEVKVEKPKKELDLDQDKA 298

Query:   299 A--DDESKVTAAFDDKILKDE---EDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIA 353
             A  + E K T +    +       ED  +LQA+ + +   L +AT CG+GS +  ++N+ 
Sbjct:   299 AKVNGEEKETKSCFSTVFSPPPRGEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLG 358

Query:   354 QVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG 413
             Q+GESL Y    ++S +SL SIWN+FGR  +G+ S+  L K    RP+ M + L+    G
Sbjct:   359 QIGESLGYPNHTVSSFVSLVSIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAG 418

Query:   414 HIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYI 473
             H+ IA   PG++++ ++++G  +G+Q  L+  I SE+FG+++  T+FN   +A P+GSYI
Sbjct:   419 HLLIAFPVPGSVYIASILMGFSFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYI 478

Query:   474 CSVRIIGRIYDR------VASG------EDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL 521
              +VR+ G +YD+       A G      +D TC G+ C+ L F+I+A V FFG+LV+  L
Sbjct:   479 LNVRVTGMLYDKEALKQLTARGLTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGL 538

Query:   522 FLRTRRFYNQVVIRRLQHS 540
              +RTR FY   + ++ + S
Sbjct:   539 AIRTREFYKGDIYKKFRES 557

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
 Identities = 79/225 (35%), Positives = 132/225 (58%)

Query:   318 EDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWN 377
             ED  L QA+   +FW +  + L G GSG+  ++N+ Q+ +SL Y  T +  L+S+ SIWN
Sbjct:   351 EDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--LVSMISIWN 408

Query:   378 FFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYG 437
             F GR G GY S++ +    + RP+ M +  + MS+GHI  A G+PG +++GT+++G+ YG
Sbjct:   409 FLGRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYG 468

Query:   438 SQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDH----- 492
             + W+++P   SE+FG++  G ++N +++A P GS + S  I   IYDR A  + H     
Sbjct:   469 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFD 528

Query:   493 -----TCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQV 532
                   C G+ CF L+ +IM+       +++ +L  RT+  Y  +
Sbjct:   529 PDDALRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVYTHL 573

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
 Identities = 76/225 (33%), Positives = 130/225 (57%)

Query:   318 EDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWN 377
             ED  L QA+   +FW +  + L G GSG+  ++N+ Q+ +SL Y  T +   +S+ SIWN
Sbjct:   356 EDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHV--FVSMISIWN 413

Query:   378 FFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYG 437
             F GR G GY S++ +    + RP+ + +  + MS+GHI  A G+PG + +GT+++G+ YG
Sbjct:   414 FLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYG 473

Query:   438 SQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE------- 490
             + W+++P   SE+FG++  G ++N +++A P GS + S  I   IYDR A  +       
Sbjct:   474 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQGSLFN 533

Query:   491 -DHT--CYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQV 532
              D    C G+ C+ L+ +IM+      + ++ +L  RT+  Y  +
Sbjct:   534 PDDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNL 578

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
 Identities = 89/248 (35%), Positives = 152/248 (61%)

Query:   288 PQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA 347
             P   PL+  E  +  + VT      +L +E    +++AM T +FW L ++ LCG+G+G+A
Sbjct:   310 PSLKPLSNEEEENHGTIVTTEKKRPVLGEEH--TIMEAMLTVDFWVLFVSFLCGVGTGLA 367

Query:   348 TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL 407
              MNN+ Q+G +L Y  T+++  +S+ SIW FFGR  +G  S+ F+ K G  RP++     
Sbjct:   368 VMNNMGQIGLALGY--TDVSIFVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQ 425

Query:   408 VAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIAC 467
             + M++G++ +A   PG+L++G+M+VGVCYG + ++     SE+FG+++ G I+N + +  
Sbjct:   426 IIMAVGYLLMALALPGSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILILNM 485

Query:   468 PVGSYICSVRIIGRIYDRVAS---GEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR 524
             P+GS++ S  + G +YD  A+   G  +TC G HCF + F++MAF +  G  +  LL  R
Sbjct:   486 PLGSFLFSGLLAGLLYDAEATPTPGGGNTCVGAHCFRIVFIVMAFASIIGVGLDLLLAYR 545

Query:   525 TRRFYNQV 532
             T+  Y ++
Sbjct:   546 TKGIYAKI 553

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 163/553 (29%), Positives = 277/553 (50%)

Query:     1 MRMEERLSTNS--KWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKD 58
             M  +  +S++S  KW+  V ++W+Q   G  YTFS YS  LKS  N +Q  L  ++V KD
Sbjct:     1 MGFQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAKD 60

Query:    59 MGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASXXXXXX 118
             +G + GIL+GL              R   L  P V+   G      GY + W        
Sbjct:    61 VGKAFGILAGLA-----------SDR---LPTP-VILLIGCFEGLLGYGVQWL-VVSRTI 104

Query:   119 XXXXXXXXXXFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVY 178
                       F+    ++  + NT  +VT + NF    G + GILKG+VGLS A+ T + 
Sbjct:   105 QPIPYWQMCIFLCMGGNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLC 164

Query:   179 KTVCNGNPSTYIXXXXXXXXXXXXXFMSHVR-IYGTNSV----DDKKHLNAFSAVAMTLA 233
               + + +P++++              +  +R I   +S     ++ ++   F+ VA+ +A
Sbjct:   165 TALFSNDPASFLVLLAVVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVA 224

Query:   234 AYFMVITVMENLLT--FSLWARXXXXXXXXXXXASPLRVAITADREDAMTSPKLSTPQQD 291
              Y     ++  + T  FS+              A P    I +          L    Q+
Sbjct:   225 VYLQSYDII-GIKTGVFSVAFASILLFLLASPIAIPFHSFIKSLNYGEQDD--LEGRIQE 281

Query:   292 PLAYHELADDESKV-----TAAFDDKILKDE----EDMNLLQAMCTGNFWFLCIATLCGM 342
             PL   E+A  E +V      AA +++  + +    ED  +++A+ T +FW L ++ LCG+
Sbjct:   282 PLLRSEIAAAEKEVIVVAAVAAEEEEKKRKKPVLGEDHTIMEAVLTVDFWVLFVSFLCGV 341

Query:   343 GSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF 402
             G+G+A MNN+ Q+G +L Y  T ++  +S+ SIW FFGR  +G  S+ FL K G  RP++
Sbjct:   342 GTGLAVMNNMGQIGLALGY--TNVSIFVSMTSIWGFFGRILSGTLSEYFLKKAGTPRPLW 399

Query:   403 MVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNT 462
                + + M++G+I +A   P +L++G+M+VGVCYG + ++     SE+FG+++ G I+N 
Sbjct:   400 NAASQILMAVGYILMALAVPNSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNI 459

Query:   463 ISIACPVGSYICSVRIIGRIYDRVAS---GEDHTCYGTHCFMLSFMIMAFVAFFGSLVAF 519
             + +  P+GS++ S  + G +YD  A+   G  +TC G HC+ L F++MA  +  G  +  
Sbjct:   460 LVLNLPLGSFLFSGLLAGFLYDAEATPTPGGGNTCVGAHCYRLIFIVMALASVIGVGLDL 519

Query:   520 LLFLRTRRFYNQV 532
             +L  RT+  Y ++
Sbjct:   520 VLAYRTKEIYAKI 532

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XV.1235.1 hypothetical protein (518 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	543
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	1e-61
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	8e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	9e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.001

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score =  202 bits (517), Expect = 1e-61
 Identities = 91/264 (34%), Positives = 138/264 (52%), Gaps = 19/264 (7%)

Query: 12  KWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLF 71
           +W+  VA+IWIQ   G  Y FS+YSS LKS+  Y Q  L  + V KD+G + G LSGL  
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 72  SYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIF 131
            Y+                PWVV   GA + F GY + W +V G +P   P  L+CL I 
Sbjct: 61  EYLP---------------PWVVLLVGAAMGFVGYGVQWLAVTGKIPGL-PYWLLCLAIC 104

Query: 132 TAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYIL 191
            A ++  +FNT ++VT + NF    G ++GILKG+ GLS A+ TQ+Y  +   + S+ +L
Sbjct: 105 LAGNSICWFNTASLVTCIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLL 164

Query: 192 VLALLPTLVSLLFMSHVRIYG---TNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTF 248
           + AL+P +VSL+ +  +R           +      F+ +++ LA Y + ++++      
Sbjct: 165 LNALVPLVVSLVALYFIRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDL 224

Query: 249 SLWARIITFIILLLLLASPLRVAI 272
           S         I++LLL  PL V I
Sbjct: 225 SSAEYYALGAIMVLLLLVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 8/192 (4%)

Query: 317 EEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIW 376
            +D  + + + T  FW L ++      SG+  +      G+SL  S   +   +S+ SI+
Sbjct: 193 VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIF 252

Query: 377 NFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTM-IVGVC 435
           N  GR   G  SD    K+G  + + +V  + A+ +  +         LF+ T+ +V   
Sbjct: 253 NGGGRPFLGALSD----KIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFT 308

Query: 436 YGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCY 495
           +G   SL P++ S+IFG  +    +  +  A  V   I    I       +  G ++T  
Sbjct: 309 WGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGLIASHALTEI--GFEYTFI 365

Query: 496 GTHCFMLSFMIM 507
            T  F L+ + +
Sbjct: 366 VTGAFALTSLAL 377

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 20/196 (10%)

Query: 331 FWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDV 390
              L +               +  + E L  S ++   ++S +S+    G   AGY SD 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 391 FLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSE 449
           F  +        +++ L+  ++G + +A +     L VG  ++G+  G+ +     + +E
Sbjct: 61  FGRR------RVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 450 IFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAF 509
            F  +  G      S    +G+ +    + G + + +             +   F+I+A 
Sbjct: 115 WFPPKERGRALGLFSAGFGLGA-LLGPLLGGLLAESLG------------WRWLFLILAI 161

Query: 510 VAFFGSLVAFLLFLRT 525
           +    +L+   L    
Sbjct: 162 LGLLLALLLLFLLRLL 177

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.1 bits (97), Expect = 9e-04
 Identities = 33/203 (16%), Positives = 69/203 (33%), Gaps = 5/203 (2%)

Query: 321 NLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFG 380
           +LL A  +  +  L    L G+G G       A + E   +   E    + L+S     G
Sbjct: 78  SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEW--FPPKERGRALGLFSAGFGLG 135

Query: 381 RFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQW 440
                    +    LGW R +F+++ ++ + +    +       L +  +   +     +
Sbjct: 136 ALLGPLLGGLLAESLGW-RWLFLILAILGLLL--ALLLLFLLRLLLLLALAFFLLSFGYY 192

Query: 441 SLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF 500
            L+  +   +  V  +      + ++      I    + G + DR+         G    
Sbjct: 193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLA 252

Query: 501 MLSFMIMAFVAFFGSLVAFLLFL 523
            L  +++A       L+  LL L
Sbjct: 253 ALGLLLLALAPSLALLLVALLLL 275

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 20/196 (10%)

Query: 333 FLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFL 392
               A L G+G  +        + E L  S TEI  L++ +S+     +  AG  SD F 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF- 59

Query: 393 HKLGWARPIFMVITLVAMSIGHIAIASGFP-GNLFVGTMIVGVCYGSQWSLMPTITSEIF 451
                 R   ++I L+  ++G + +        L V  ++ G+  G+ +     + ++ F
Sbjct: 60  -----GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 452 GVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVA 511
                G     +S    +G+ +  + + G +                 +  +F+I+A +A
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPL-LGGLLASLFG------------WRAAFLILAILA 161

Query: 512 FFGSLVAFLLFLRTRR 527
              +++A LL  R   
Sbjct: 162 LLAAVLAALLLPRPPP 177

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	543
PTZ00207	591	hypothetical protein; Provisional	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.98
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.98
PRK03545	390	putative arabinose transporter; Provisional	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.97
PRK03699	394	putative transporter; Provisional	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.97
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.97
PRK10504	471	putative transporter; Provisional	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
TIGR00891	405	2A0112 putative sialic acid transporter.	99.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.96
PRK12382	392	putative transporter; Provisional	99.96
PRK10489	417	enterobactin exporter EntS; Provisional	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.95
KOG2532	466	consensus Permease of the major facilitator superf	99.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.95
TIGR00898	505	2A0119 cation transport protein.	99.95
TIGR00900	365	2A0121 H+ Antiporter protein.	99.95
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.95
PRK11043	401	putative transporter; Provisional	99.95
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
PRK10133	438	L-fucose transporter; Provisional	99.95
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.94
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.94
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.94
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.94
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.94
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.94
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.94
KOG2533	495	consensus Permease of the major facilitator superf	99.94
PRK09528	420	lacY galactoside permease; Reviewed	99.93
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.93
PRK10054	395	putative transporter; Provisional	99.93
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.93
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.93
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.93
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.93
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.93
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.93
KOG0569	485	consensus Permease of the major facilitator superf	99.92
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
TIGR00901	356	2A0125 AmpG-related permease.	99.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.92
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.91
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
PRK11902	402	ampG muropeptide transporter; Reviewed	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.9
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.9
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.9
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.88
TIGR00805	633	oat sodium-independent organic anion transporter.	99.88
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.88
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.86
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.86
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.86
KOG0254	513	consensus Predicted transporter (major facilitator	99.85
KOG2563	480	consensus Permease of the major facilitator superf	99.84
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.82
PRK09669	444	putative symporter YagG; Provisional	99.8
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.8
PRK09848	448	glucuronide transporter; Provisional	99.79
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.79
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.77
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.77
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.76
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.74
PRK10429	473	melibiose:sodium symporter; Provisional	99.74
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.72
PF13347	428	MFS_2: MFS/sugar transport protein	99.72
KOG2615	451	consensus Permease of the major facilitator superf	99.72
PRK11462	460	putative transporter; Provisional	99.7
COG2211	467	MelB Na+/melibiose symporter and related transport	99.64
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.63
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.62
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.62
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.56
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.48
PRK11663	434	regulatory protein UhpC; Provisional	99.47
PRK10091	382	MFS transport protein AraJ; Provisional	99.45
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.44
PRK03545	390	putative arabinose transporter; Provisional	99.43
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.43
PRK10504	471	putative transporter; Provisional	99.43
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.42
PRK10054	395	putative transporter; Provisional	99.42
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.42
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.42
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.41
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.4
TIGR00900	365	2A0121 H+ Antiporter protein.	99.39
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.38
TIGR00893	399	2A0114 d-galactonate transporter.	99.37
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.37
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.37
PLN00028	476	nitrate transmembrane transporter; Provisional	99.37
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.37
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.36
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.35
TIGR00891	405	2A0112 putative sialic acid transporter.	99.35
TIGR00895	398	2A0115 benzoate transport.	99.35
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.34
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.33
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.33
PRK03699	394	putative transporter; Provisional	99.33
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.33
PRK09874	408	drug efflux system protein MdtG; Provisional	99.32
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.32
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.31
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.31
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.31
PRK10489	417	enterobactin exporter EntS; Provisional	99.31
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.31
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.31
PRK12307	426	putative sialic acid transporter; Provisional	99.31
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.31
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.3
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.3
PRK11043	401	putative transporter; Provisional	99.3
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.29
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.29
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.28
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.27
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.26
PRK03893	496	putative sialic acid transporter; Provisional	99.25
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.25
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.23
PRK09705	393	cynX putative cyanate transporter; Provisional	99.22
PRK03633	381	putative MFS family transporter protein; Provision	99.22
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.21
PRK12382	392	putative transporter; Provisional	99.21
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.19
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.18
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.18
PRK05122	399	major facilitator superfamily transporter; Provisi	99.17
PRK09528	420	lacY galactoside permease; Reviewed	99.16
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.15
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.14
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.14
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.12
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.12
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.1
KOG3626	735	consensus Organic anion transporter [Secondary met	99.08
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.07
PRK11010	491	ampG muropeptide transporter; Validated	99.06
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.05
PTZ00207	591	hypothetical protein; Provisional	99.03
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.03
PRK10642	490	proline/glycine betaine transporter; Provisional	99.03
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.03
PRK15011	393	sugar efflux transporter B; Provisional	99.03
PRK11902	402	ampG muropeptide transporter; Reviewed	99.03
PRK10133	438	L-fucose transporter; Provisional	99.02
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.02
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.01
TIGR00805	633	oat sodium-independent organic anion transporter.	99.0
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.0
TIGR00898	505	2A0119 cation transport protein.	98.99
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.99
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.98
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.98
PRK09952	438	shikimate transporter; Provisional	98.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.97
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.95
TIGR00901	356	2A0125 AmpG-related permease.	98.94
KOG2532	466	consensus Permease of the major facilitator superf	98.94
PRK15075	434	citrate-proton symporter; Provisional	98.93
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.92
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.91
KOG2615	451	consensus Permease of the major facilitator superf	98.88
KOG2533	495	consensus Permease of the major facilitator superf	98.85
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.84
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.81
KOG0254	513	consensus Predicted transporter (major facilitator	98.8
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.8
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.79
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.7
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.69
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.67
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.56
PRK09669	444	putative symporter YagG; Provisional	98.55
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.54
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.52
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.5
PRK10429	473	melibiose:sodium symporter; Provisional	98.47
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.46
PF13347	428	MFS_2: MFS/sugar transport protein	98.45
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.43
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.43
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.41
PRK11462	460	putative transporter; Provisional	98.4
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.33
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.32
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.28
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.26
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.23
KOG3762	618	consensus Predicted transporter [General function	98.23
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.2
KOG0569	485	consensus Permease of the major facilitator superf	98.19
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.17
COG2211	467	MelB Na+/melibiose symporter and related transport	98.16
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.15
PRK09848	448	glucuronide transporter; Provisional	98.12
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.11
KOG0637	498	consensus Sucrose transporter and related proteins	98.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.98
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.9
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.85
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.68
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.66
COG0477	338	ProP Permeases of the major facilitator superfamil	97.65
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.64
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.64
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.55
PF12832	77	MFS_1_like: MFS_1 like family	97.49
KOG2563	480	consensus Permease of the major facilitator superf	97.3
KOG3810	433	consensus Micronutrient transporters (folate trans	97.18
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.18
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.12
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.06
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.99
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.89
COG0477	338	ProP Permeases of the major facilitator superfamil	96.84
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.83
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.74
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.51
KOG3626	735	consensus Organic anion transporter [Secondary met	96.35
KOG3762	618	consensus Predicted transporter [General function	96.19
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.18
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.18
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.03
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.02
PF12832	77	MFS_1_like: MFS_1 like family	95.97
KOG0637	498	consensus Sucrose transporter and related proteins	95.86
PRK03612	521	spermidine synthase; Provisional	95.53
KOG3880	409	consensus Predicted small molecule transporter inv	94.96
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.44
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.16
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.45
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	92.21
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.82
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	91.26
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	90.69
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	90.61
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	90.15
PRK03612	521	spermidine synthase; Provisional	89.55
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	89.47

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-46  Score=388.02  Aligned_cols=507  Identities=15%  Similarity=0.221  Sum_probs=387.0

Q ss_pred             chhhHHHHHHHHHHHHHcCCccccccccHHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhccccccccccccccc
Q 009130            9 TNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFL   88 (543)
Q Consensus         9 ~~~~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~   88 (543)
                      ..+||.+++++++++.+.|..|.++++.|.+++++|+|+.|++++.........++++.|++.||+|             
T Consensus        23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G-------------   89 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLG-------------   89 (591)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence            4679999999999888889999999999999999999999999766554444446778999999999             


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhh
Q 009130           89 RGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVG  168 (543)
Q Consensus        89 ~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~  168 (543)
                        +|+++.++.+++++|+++.+++..+....  +++.++++|+++|+|++..++.+..++.+|||++||+++|+..++.+
T Consensus        90 --~R~vllig~ll~~iG~ll~ala~~~~i~~--s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~g  165 (591)
T PTZ00207         90 --PRPIFVLSMTVFCLGTLLFALTFQEVIEG--SVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTG  165 (591)
T ss_pred             --cHHHHHHHHHHHHHHHHHHHHHhcccccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH
Confidence              99999999999999999966543332223  38999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCc--------c-cch-----------------hh
Q 009130          169 LSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSV--------D-DKK-----------------HL  222 (543)
Q Consensus       169 lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~-----------------~~  222 (543)
                      +|+++.+++...++..+.+.++++++.++.+++++...+++.+|.+..        + ++.                 .+
T Consensus       166 LGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f  245 (591)
T PTZ00207        166 LGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRF  245 (591)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceeh
Confidence            999988888887776555677788888888888888888887753321        1 111                 23


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH-HHhhcc-cccccccccccccCCCCCCCCCCCCCCccccCC
Q 009130          223 NAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILL-LLLASP-LRVAITADREDAMTSPKLSTPQQDPLAYHELAD  300 (543)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (543)
                      .....+.+.++.|+.+.+..++....++......+.+++ +++..| +..+.+......+  +++++.|.++..+...+.
T Consensus       246 ~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~--~~~~~~~~~~~~~~~~~~  323 (591)
T PTZ00207        246 VYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRP--HDDSDGKAKEHVEAGEEV  323 (591)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCc--CCCccccccccccccccc
Confidence            345667777889999999999988888777776666554 455555 4444433111100  000000000000000000


Q ss_pred             Cccchhccccccc-chhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhh-CCCchh--hHHHHHHHHHH
Q 009130          301 DESKVTAAFDDKI-LKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESL-HYSTTE--INSLISLWSIW  376 (543)
Q Consensus       301 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~--a~~~~~~~~i~  376 (543)
                      .+++....+.+.+ ..+.++.+.++.+++..||.+++.+++..+.+..+++++.++.+.+ |++.++  ...++++.+++
T Consensus       324 ~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~  403 (591)
T PTZ00207        324 SAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVG  403 (591)
T ss_pred             cccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHH
Confidence            0000000000001 1122334889999999999999999999999999999999999999 884333  33388999999


Q ss_pred             HhhhccccccchhhhhhhcC----CCchHHHHHHHHHHHHHHHHHhhcCc-chHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 009130          377 NFFGRFGAGYGSDVFLHKLG----WARPIFMVITLVAMSIGHIAIASGFP-GNLFVGTMIVGVCYGSQWSLMPTITSEIF  451 (543)
Q Consensus       377 ~~ig~~~~G~lsD~~~~~~~----~~r~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~  451 (543)
                      +.+||+..|.++ .+-+|++    .+|...+.+..+ ++++.++++...+ ..+++..++.|+++|..++..+++++|+|
T Consensus       404 ~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selF  481 (591)
T PTZ00207        404 SAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIF  481 (591)
T ss_pred             HHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence            999999999998 4444433    566556666666 6666666654444 78999999999999999999999999999


Q ss_pred             CCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC-CccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhH
Q 009130          452 GVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE-DHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYN  530 (543)
Q Consensus       452 ~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~-~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  530 (543)
                      + |+.|+.+.+..++.-+|+++++..++|.++|..+.++ +..|.|.+||+.+|++++++++++++....+..|+|+.++
T Consensus       482 g-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~  560 (591)
T PTZ00207        482 A-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCL  560 (591)
T ss_pred             c-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHH
Confidence            9 9999999999999999999998899999999887554 3489999999999999999999999999999999999888


Q ss_pred             HHHHHhh
Q 009130          531 QVVIRRL  537 (543)
Q Consensus       531 ~~~~~~~  537 (543)
                      +.+++|.
T Consensus       561 ~~~~~~~  567 (591)
T PTZ00207        561 KALEERR  567 (591)
T ss_pred             HHHHHHH
Confidence            8766554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.7e-35  Score=278.71  Aligned_cols=403  Identities=15%  Similarity=0.094  Sum_probs=299.4

Q ss_pred             hhHHHHHHHHHHHHHcC-CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccccccc
Q 009130           11 SKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFL   88 (543)
Q Consensus        11 ~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~   88 (543)
                      +||.+++..++...+.. +.-++++..|.+.+|.++|.+|++.+.+++.+.+. .....|.++||.+             
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~n-------------   92 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSN-------------   92 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-------------
Confidence            44445443333333322 34588999999999999999999999898888886 5668999999999             


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhh
Q 009130           89 RGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFV  167 (543)
Q Consensus        89 ~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~  167 (543)
                        +|..+.+|+++.++..++     .++.++   .+.+.++.+++|+.+|+..|++..++++||| +|||+..++.++..
T Consensus        93 --pr~fm~~gLilsai~nil-----~Gfs~s---~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~sh  162 (448)
T COG2271          93 --PRYFMAFGLILSAIVNIL-----FGFSPS---LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSH  162 (448)
T ss_pred             --CceeehHHHHHHHHHHHH-----HhhhhH---HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhh
Confidence              999999999999999999     666555   8999999999999999999999999999998 68999999999999


Q ss_pred             hhhHHHHHHHH--HHhcCCCchhHHHHHHH-HHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhh
Q 009130          168 GLSGAVLTQVY--KTVCNGNPSTYILVLAL-LPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMEN  244 (543)
Q Consensus       168 ~lg~~i~~~l~--~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (543)
                      ++|+.+.+++.  ..+....+|+.-++... +..+++++.....++.|++.+                            
T Consensus       163 NiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~G----------------------------  214 (448)
T COG2271         163 NIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG----------------------------  214 (448)
T ss_pred             hcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccC----------------------------
Confidence            99999999999  77776667776665443 444444444444444332100                            


Q ss_pred             cccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHH
Q 009130          245 LLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQ  324 (543)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (543)
                                                  .++.|++.         .|+...++          .+++.+.....+.-.+.
T Consensus       215 ----------------------------LP~ie~~~---------~d~~e~~~----------~~~~~~~ls~~~i~~~Y  247 (448)
T COG2271         215 ----------------------------LPPIEEYR---------GDPLEIYE----------EEKENEGLTAWQIFVKY  247 (448)
T ss_pred             ----------------------------CCCHHHhh---------cCchhhhh----------hhccCCCccHHHHHHHH
Confidence                                        01111111         00000000          00000001112233456


Q ss_pred             hhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          325 AMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       325 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      +++||..|.++++.++....-+++..|.|.|+.+ .|+|..++++..+++-+++..|.+++||+|||+-+.   +|.+..
T Consensus       248 VL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg---rR~p~~  324 (448)
T COG2271         248 VLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG---RRGPMA  324 (448)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc---ccchHH
Confidence            7899999999999999999999999999999966 599999999999999999999999999999999653   445566


Q ss_pred             HHHHHHHHHHHHHHh-hcC--cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhh-hhhhhhhhhh
Q 009130          404 VITLVAMSIGHIAIA-SGF--PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPV-GSYICSVRII  479 (543)
Q Consensus       404 ~~~~~~~~i~~~~~~-~~~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i-g~~i~~~~l~  479 (543)
                      ++.++...++.+.+. .++  .....+..+++|+..-+..-+....+.|..|++..|++.|+....+.+ |. ..+....
T Consensus       325 ~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga-~~a~~~~  403 (448)
T COG2271         325 LIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGA-ALAGLPL  403 (448)
T ss_pred             HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhH-HhcCCcc
Confidence            666666666655554 222  244555666777765554555666788999999999999999998888 55 5777788


Q ss_pred             hhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 009130          480 GRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRR  527 (543)
Q Consensus       480 g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~  527 (543)
                      |++.|..|            |...|++..+.++++.++.+.+.+++++
T Consensus       404 g~i~d~~g------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~  439 (448)
T COG2271         404 GYIADTWG------------WDGGFIVLSIAALLAILLLLPVWNAEER  439 (448)
T ss_pred             eeeEecCC------------CcchHHHHHHHHHHHHHHHHHHHhhcch
Confidence            89888876            9999999998888888887777655444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.3e-33  Score=293.82  Aligned_cols=395  Identities=13%  Similarity=0.020  Sum_probs=264.0

Q ss_pred             CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHH
Q 009130           28 TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGY  106 (543)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~  106 (543)
                      ....+++..|.+.+|+|++..|.+++.+.+.+++. .+++.|.++||+|               +|+++..+.++++++.
T Consensus        44 ~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g---------------~r~~l~~~~~~~~~~~  108 (467)
T PRK09556         44 IRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKN---------------TKQFLPFLLILSAICM  108 (467)
T ss_pred             HhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccC---------------ccchHHHHHHHHHHHH
Confidence            45677888999999999999999988888888876 7889999999999               9999999999998888


Q ss_pred             HHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC-
Q 009130          107 FLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG-  184 (543)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~-  184 (543)
                      +++++..++.+++   ++.+++.|+++|++++...+...+++++|+| ++||+++|+...+.++|+++++++...+.+. 
T Consensus       109 ~~~~~~~~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~  185 (467)
T PRK09556        109 LGFGASLGSGSVS---LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF  185 (467)
T ss_pred             HHHHHHHhcccch---HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence            8866655565665   8999999999999999999999999999998 6799999999999999999998877655432 


Q ss_pred             --CchhHHHHH-HHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 009130          185 --NPSTYILVL-ALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILL  261 (543)
Q Consensus       185 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (543)
                        .+|+..+.. +.+..+++++...+                                                      
T Consensus       186 ~~~~~~~~f~~~g~~~~~~~i~~~~~------------------------------------------------------  211 (467)
T PRK09556        186 FDGHVIGMFIFPSIIALIIGFIGLRY------------------------------------------------------  211 (467)
T ss_pred             ccCcchhHHHHHHHHHHHHHHHHHHh------------------------------------------------------
Confidence              134433322 22211111111111                                                      


Q ss_pred             HHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhh
Q 009130          262 LLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCG  341 (543)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~  341 (543)
                                .+++|++.+..+++   +   ..++ +.+++++.   .+++ +....+.-.++.++++.+|..++..++.
T Consensus       212 ----------~~~~p~~~~~~~~~---~---~~~~-~~~~~~~~---~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~  270 (467)
T PRK09556        212 ----------GSDSPEELGWGKAE---E---IFGE-PISEEDKE---TEST-DMTKWQIFVEYVLKNPVIWLLCFANIFL  270 (467)
T ss_pred             ----------CCCChhhcCCCChh---h---cccC-ccchhhhc---cccc-cCcHHHHHHHHHHcChHHHHHHHHHHHH
Confidence                      11222211100000   0   0000 00000000   0000 0000001123478999999999888887


Q ss_pred             hchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHH--HHHh
Q 009130          342 MGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGH--IAIA  418 (543)
Q Consensus       342 ~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~--~~~~  418 (543)
                      .........|.|.|+++ .|+|..+++...+...++..+++++.|+++||+++|      +.+........++.  ..+.
T Consensus       271 ~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r------~~~~~~~~~~~~~~~~~~~~  344 (467)
T PRK09556        271 YIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR------RALVACIALALIIFTLGVYQ  344 (467)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHHHHHHH
Confidence            77777788899988865 799999999999999999999999999999999764      22222222222221  1222


Q ss_pred             h-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhh-hhhhhhhhhhhhhhhhccCCCCccccc
Q 009130          419 S-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPV-GSYICSVRIIGRIYDRVASGEDHTCYG  496 (543)
Q Consensus       419 ~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i-g~~i~~~~l~g~l~~~~g~~~~~~~~~  496 (543)
                      . .+....++..++.|++..+........+.|.+|++++|++.|+.+....+ |+ .++|.+.|++.|...+......+.
T Consensus       345 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~-~~~~~~~G~i~~~~~~g~~~~~~~  423 (467)
T PRK09556        345 HATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGD-SFAKVGLGMIADPTKNGTPIFGYT  423 (467)
T ss_pred             hcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhH-HHHhhhHHHHhccccccccccccc
Confidence            2 23333445555666543333333345677999999999999999988886 55 488999999999211000000011


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          497 THCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       497 ~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      ..+|+..|++..++.+++.++.+.+.
T Consensus       424 ~~~~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        424 LTGWAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            23499999999888888877766554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.7e-34  Score=294.27  Aligned_cols=428  Identities=15%  Similarity=0.174  Sum_probs=323.0

Q ss_pred             cchhhHHHHHHHHHHHHH-cCCccccccccHHHHhhcCCChhhHHHHHHHhhhc-ccccchhhHhhhhcccccccccccc
Q 009130            8 STNSKWIATVASIWIQCS-VGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMG-GSAGILSGLLFSYVTLNHHHHQTRT   85 (543)
Q Consensus         8 ~~~~~w~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~G~l~d~~g~~~~~~~~~~   85 (543)
                      ..-+.|.+++++++.+.. .|..++++++.+.++++++-+.+|++|+.+..... ...+++.+.+.||||          
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg----------  109 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFG----------  109 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcC----------
Confidence            344789999999888755 78899999999999999999999999776655544 457999999999999          


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHH-HHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHH
Q 009130           86 RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLM-CLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILK  164 (543)
Q Consensus        86 ~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~  164 (543)
                           .|++.++|.++.++|.++     ++++++   ++++ +.+.++.|+|.|+.+.++..++..||++||+.|+|+..
T Consensus       110 -----~R~v~i~G~~v~~~g~~l-----ssF~~~---i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~  176 (509)
T KOG2504|consen  110 -----CRTVMIAGGLVAALGLLL-----SSFATS---LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAV  176 (509)
T ss_pred             -----chHHHHHHHHHHHHHHHH-----HHHHhh---HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhh
Confidence                 999999999999999999     889988   6666 55899999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCccc-chhhhhHHHHHHHHHHHHHHHHHHh
Q 009130          165 GFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDD-KKHLNAFSAVAMTLAAYFMVITVME  243 (543)
Q Consensus       165 ~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  243 (543)
                      ++.++|.++.|++...+++..+|++.++.-....+..+.....+++...+.... .+..+.                   
T Consensus       177 ~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~-------------------  237 (509)
T KOG2504|consen  177 SGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRN-------------------  237 (509)
T ss_pred             ccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc-------------------
Confidence            999999999999999999999998877776666666666656666533221100 000000                   


Q ss_pred             hcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCC-CCCCccccCCCccchhcccccccchhhcchh-
Q 009130          244 NLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQ-DPLAYHELADDESKVTAAFDDKILKDEEDMN-  321 (543)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  321 (543)
                                                 .....+....+. +...+++ .+..+.. ...+++..+.+++......+... 
T Consensus       238 ---------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  288 (509)
T KOG2504|consen  238 ---------------------------SAASVESTPKPV-ELRISERDSGLKKLS-LSNLATLKRGPDKWRNSPLQAFLS  288 (509)
T ss_pred             ---------------------------cccccccccccc-ccccccCCCCCCccc-ccchhhhhhCCccccccchhhhhh
Confidence                                       000000000000 0000000 0000000 00000000000001000111111 


Q ss_pred             --HHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCc
Q 009130          322 --LLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWAR  399 (543)
Q Consensus       322 --~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r  399 (543)
                        ..++++++.|+.+++...+....+.....++|.+.++.|++..+++.+.++.++.+++||++.|+++|+...    .+
T Consensus       289 ~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~----~~  364 (509)
T KOG2504|consen  289 MLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI----RA  364 (509)
T ss_pred             hhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc----ch
Confidence              268899999999999999998888888999999999999999999999999999999999999999999853    34


Q ss_pred             hHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhh
Q 009130          400 PIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRI  478 (543)
Q Consensus       400 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l  478 (543)
                      ..+..++.+...++..... ..+...+....+++|++.|...+..+.++.|+.+.++...++|+..+..+++. +++|++
T Consensus       365 ~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~-l~gpPi  443 (509)
T KOG2504|consen  365 LVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGA-LVGPPI  443 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHH-HcCccc
Confidence            4566666666666665444 34556678888999999999998888899999999999999999999999998 589999


Q ss_pred             hhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          479 IGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       479 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .|++.|.+++           |...|+..++..+++..+.++..
T Consensus       444 ag~~~d~tg~-----------Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  444 AGLLYDITGN-----------YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ceeeeeccCC-----------eeeehhhcChHHHHHHHHHHHhH
Confidence            9999999985           99999999999998887766655

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=3.9e-33  Score=288.59  Aligned_cols=401  Identities=12%  Similarity=0.079  Sum_probs=283.1

Q ss_pred             ccchhhHHHHHHHHHHHHH-cCCccccccccHHHHhhcCCChhhHHHHHHHhhhcc-cccchhhHhhhhccccccccccc
Q 009130            7 LSTNSKWIATVASIWIQCS-VGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGG-SAGILSGLLFSYVTLNHHHHQTR   84 (543)
Q Consensus         7 ~~~~~~w~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~~~~~   84 (543)
                      +...++|.++.++++.... .+..+.++.+.|.+.+++|++.++.+++.+.+.+.. ..+++.|++.||+|         
T Consensus        12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g---------   82 (455)
T TIGR00892        12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFG---------   82 (455)
T ss_pred             CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcC---------
Confidence            4456789888777765543 445577888999999999999999996666655544 47889999999999         


Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHH-HHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHH
Q 009130           85 TRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMC-LFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGIL  163 (543)
Q Consensus        85 ~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~  163 (543)
                            ||++++.+.+++.+++++     ++++++   ++.++ ..|+++|++.+...++...++.+|||++|++++|+.
T Consensus        83 ------~r~~l~~~~~~~~~~~~~-----~~~~~~---~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~  148 (455)
T TIGR00892        83 ------CRPVVIAGGLLASLGMIL-----ASFSSN---VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLA  148 (455)
T ss_pred             ------chHHHHhhHHHHHHHHHH-----HHHhhh---HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence                  999999999999998888     666666   56665 467999999998777777888999998999999999


Q ss_pred             HHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHh
Q 009130          164 KGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVME  243 (543)
Q Consensus       164 ~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (543)
                      ..+..+|..+++++.+.+.+..+|++.++...+..++..+...+.++.+.                              
T Consensus       149 ~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~------------------------------  198 (455)
T TIGR00892       149 MAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGP------------------------------  198 (455)
T ss_pred             HhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCc------------------------------
Confidence            99999999999999988887778888777666544433222222211100                              


Q ss_pred             hcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHH
Q 009130          244 NLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLL  323 (543)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (543)
                                                     .++..+   +++++..++   +  .+.++.    +.....++..+....
T Consensus       199 -------------------------------~~~~~~---~~~~~~~~~---~--~~~~~~----~~~~~~~~~~~~~~~  235 (455)
T TIGR00892       199 -------------------------------SQRVSK---SKSKEGLPP---D--GSTKKL----SKKSTAEKINRFLDF  235 (455)
T ss_pred             -------------------------------cccccc---ccccccCCC---C--Cccccc----cccchhhhhhhhcch
Confidence                                           000000   000000000   0  000000    000000000111113


Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      +.+++|.++...+..++.....+....+++.+.++.|+++.+++...++.+++.++++++.|+++||...+.  .|+..+
T Consensus       236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~  313 (455)
T TIGR00892       236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP--HVQYLF  313 (455)
T ss_pred             HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--HHHHHH
Confidence            578899999888777766666666677888888889999999999999999999999999999999742210  122233


Q ss_pred             HHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          404 VITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       404 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      ..+.+...+++++.. ..+.+.+++..++.|++.+...+...+++.|.+|++++++++|+.+....+|. +++|.+.|.+
T Consensus       314 ~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~-~igp~i~G~l  392 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAV-LIGPPLAGRL  392 (455)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHH-Hccccceeee
Confidence            333333333333333 34555566778888999988888888999999999999999999999999998 4899999999


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHHHHH
Q 009130          483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLV  517 (543)
Q Consensus       483 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~  517 (543)
                      .|..++           |+..|++.+++.+++.+.
T Consensus       393 ~~~~g~-----------~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       393 VDATKN-----------YKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             ehhcCC-----------cchHHHHhhHHHHHHHHH
Confidence            998763           888998888776666553

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=6.5e-33  Score=280.60  Aligned_cols=369  Identities=20%  Similarity=0.225  Sum_probs=280.3

Q ss_pred             hHHHHHHHHHHHHHcCCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCC
Q 009130           12 KWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRG   90 (543)
Q Consensus        12 ~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g   90 (543)
                      +|.+++.+....+..+..|+++.+.|.+.+|+|+++.+.+++.+.+.++.. .+++.|.+.||+|               
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G---------------   66 (377)
T TIGR00890         2 WWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFG---------------   66 (377)
T ss_pred             eEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcC---------------
Confidence            455555555555667778889999999999999999999988788787776 7889999999999               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhh
Q 009130           91 PWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLS  170 (543)
Q Consensus        91 ~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg  170 (543)
                      ||+++..+.++.+++.++     ++++++   ++.+++.|++.|++.+..++.....+.+|+|++|++++++...+.++|
T Consensus        67 ~r~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  138 (377)
T TIGR00890        67 PRAVAMLGGILYGLGFTF-----YAIADS---LAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLG  138 (377)
T ss_pred             ccchhHHhHHHHHHHHHH-----HHHHHH---HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchh
Confidence            999999999999999988     666666   799999999999999998888888899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH-hheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccch
Q 009130          171 GAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFM-SHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFS  249 (543)
Q Consensus       171 ~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (543)
                      ..+++++...+.+..+|++.++...+..++..+.. .+.+                                        
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~----------------------------------------  178 (377)
T TIGR00890       139 SFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIG----------------------------------------  178 (377)
T ss_pred             HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhee----------------------------------------
Confidence            99988888887776778877766554433321111 1111                                        


Q ss_pred             hhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcch
Q 009130          250 LWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTG  329 (543)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (543)
                                              +++++++   +              +++         +.   +.++.+.++.++++
T Consensus       179 ------------------------~~~~~~~---~--------------~~~---------~~---~~~~~~~~~~~~~~  205 (377)
T TIGR00890       179 ------------------------YPPGQLI---K--------------TNI---------EV---SVKDYTVWEMLRTP  205 (377)
T ss_pred             ------------------------cCchhcc---c--------------cCc---------cc---chhhhhHHHHHcCc
Confidence                                    1110000   0              000         00   00112345678889


Q ss_pred             hHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHH
Q 009130          330 NFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVA  409 (543)
Q Consensus       330 ~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~  409 (543)
                      .+|.+.+..++..........+.+++.++.|.++.+.+...++..++..+++++.|+++||++||      +.+..+.+.
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~------~~~~~~~~~  279 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ------KTMSIVFGI  279 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhHHHHH
Confidence            98888777666555555555666777788899988899999999999999999999999999654      456666666


Q ss_pred             HHHHHHHHhh-cCcc--hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 009130          410 MSIGHIAIAS-GFPG--NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV  486 (543)
Q Consensus       410 ~~i~~~~~~~-~~~~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~  486 (543)
                      ..++.+++.. ++..  ..+...++.|++.+...+..+.++.|.+|+++++++.|+.+....+|. .++|.+.|.+.|..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~  358 (377)
T TIGR00890       280 SAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG-IFGGLIASHALTEI  358 (377)
T ss_pred             HHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence            6666554442 2222  233445667888887777788899999999999999999999999998 48999999999987


Q ss_pred             cCCCCccccccchhHHHHHHHHHHHHHHH
Q 009130          487 ASGEDHTCYGTHCFMLSFMIMAFVAFFGS  515 (543)
Q Consensus       487 g~~~~~~~~~~~~~~~~f~~~~~~~~~~~  515 (543)
                      |            |+..|++.+++.+++.
T Consensus       359 g------------~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       359 G------------FEYTFIVTGAFALTSL  375 (377)
T ss_pred             c------------hhhHHHHHHHHHHHhc
Confidence            7            9999988877666654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1.3e-31  Score=272.49  Aligned_cols=358  Identities=10%  Similarity=0.036  Sum_probs=266.5

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      .++.++..|.+++|+|+|.+|.+++.+.+.+++. .+++.|++.||+|               ||+++..+.++++++.+
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G---------------~r~~l~~~~~l~~~~~~   89 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVS---------------ERRSVAISLLLIAVGAL   89 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhC---------------chHHHHHHHHHHHHHHH
Confidence            3668899999999999999999988777777775 6889999999999               99999999999999999


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCC-c
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGN-P  186 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~-~  186 (543)
                      +     ++++++   ++.+++.|+++|+|.+...+.....+.+|||+||++++|+..++..+|..+++.+...+.+.. .
T Consensus        90 ~-----~~~a~~---~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~  161 (393)
T PRK09705         90 M-----RELYPQ---SALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET  161 (393)
T ss_pred             H-----HHHCcc---hHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9     888887   788999999999999999998889999999989999999999999999999998888776543 5


Q ss_pred             hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          187 STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      |++.+....++.++.+..                                                            ..
T Consensus       162 w~~~~~~~~~~~~~~~~~------------------------------------------------------------~~  181 (393)
T PRK09705        162 WYQTLAWWALPAVVALFA------------------------------------------------------------WW  181 (393)
T ss_pred             HHHHHHHHHHHHHHHHHH------------------------------------------------------------HH
Confidence            655443322221111000                                                            00


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                      +   ..++++++ +                  +          +++       .+.++.++++.+|.+.+..++......
T Consensus       182 ~---~~~~~~~~-~------------------~----------~~~-------~~~~~~l~~~~~~~l~~~~~~~~~~~~  222 (393)
T PRK09705        182 W---QSAREVAS-S------------------H----------KTT-------TTPVRVVFTPRAWTLGVYFGLINGGYA  222 (393)
T ss_pred             H---HhcCCCcc-c------------------c----------CCC-------cCCcccccCHhHHHHHHHHHHHHHHHH
Confidence            0   00000000 0                  0          000       001234566777777776666666666


Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNL  425 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~  425 (543)
                      ....+.|.++++.|.+..+++...+++.+++.+|+++.|++.||+++|      +.+..+..+..++..++. .+.... 
T Consensus       223 ~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~-  295 (393)
T PRK09705        223 SLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR------KLLMLALVLQLVGFCGFIWLPLQLP-  295 (393)
T ss_pred             HHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHHHHHHccchHH-
Confidence            778889999988999999999999999999999999999999998643      455556555555554433 222111 


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcC-CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFG-VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSF  504 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f  504 (543)
                      ....++.|++.+..++.......+.++ ++++++++|+.+....++. .++|.+.|++.|..|+           |...|
T Consensus       296 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~gp~~~G~l~~~~g~-----------~~~~~  363 (393)
T PRK09705        296 VLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIA-GLAPWFSGVLRSISGN-----------YLMDW  363 (393)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCC-----------chHHH
Confidence            222345677777777776666677775 5678999999988888887 4899999999999874           88899


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchh
Q 009130          505 MIMAFVAFFGSLVAFLLFLRTRR  527 (543)
Q Consensus       505 ~~~~~~~~~~~i~~~~~~~~~~~  527 (543)
                      ++.++.+++..++.+.+.+|++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        364 AFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcccccc
Confidence            99888888777776666655543

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.3e-31  Score=276.25  Aligned_cols=379  Identities=13%  Similarity=0.085  Sum_probs=261.5

Q ss_pred             CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHH
Q 009130           28 TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGY  106 (543)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~  106 (543)
                      ..+.++.+.|.+.+++|+|..+.+++.+.+.++.. .+++.|++.||+|               ||+++.++.++++++.
T Consensus        38 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g---------------~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         38 TRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSN---------------ARYFMGIGLIATGIIN  102 (434)
T ss_pred             hhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcC---------------CchhHHHHHHHHHHHH
Confidence            34567888899999999999999977777777765 7889999999999               9999999999999999


Q ss_pred             HHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCC
Q 009130          107 FLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGN  185 (543)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~  185 (543)
                      ++     .+.+++   ++.+++.|++.|++.|..++.....+.+|+| ++||+++++...+.++|.++++++.+.+.+..
T Consensus       103 ~~-----~~~~~~---~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  174 (434)
T PRK11663        103 IL-----FGFSSS---LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY  174 (434)
T ss_pred             HH-----HHHHhH---HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            88     666665   7888999999999999888988999999998 57999999999999999999999999888777


Q ss_pred             chhHHHHHHHHHHHHH-HHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHh
Q 009130          186 PSTYILVLALLPTLVS-LLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLL  264 (543)
Q Consensus       186 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (543)
                      +|++.+....+..++. +....++++                                                      
T Consensus       175 gw~~~f~~~~i~~~~~~~~~~~~~~~------------------------------------------------------  200 (434)
T PRK11663        175 GWRYGMMIAGIIAIVVGLFLCWRLRD------------------------------------------------------  200 (434)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCC------------------------------------------------------
Confidence            8888876655443322 221112221                                                      


Q ss_pred             hcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhH-HHhhcchhHHHHHHHHHhhhc
Q 009130          265 ASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNL-LQAMCTGNFWFLCIATLCGMG  343 (543)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~l~~~~~~~  343 (543)
                                +|++... ++.++.+++    .++.+++       ++. ++.+.+... ...++++.+|.+.+..++...
T Consensus       201 ----------~p~~~~~-~~~~~~~~~----~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (434)
T PRK11663        201 ----------KPQAMGL-PSVGEWRHD----ALELAQQ-------QEG-AGLSRKEILTKYVLLNPYIWLLSFSYVLVYV  257 (434)
T ss_pred             ----------CHhhcCC-CCccccccc----ccccchh-------ccc-cCCChhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence                      1111000 000000000    0000000       000 000000111 236788999988887776666


Q ss_pred             hhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHH---HHHHHHHHHHHHhh
Q 009130          344 SGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVI---TLVAMSIGHIAIAS  419 (543)
Q Consensus       344 ~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~---~~~~~~i~~~~~~~  419 (543)
                      ....+..++|.+++ +.|++..+++...+.+.+++.+++++.|+++||+.++   +|+.....   +.+...+++.....
T Consensus       258 ~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~---~r~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
T PRK11663        258 VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG---NRGPMNLIFAAGILLSVGSLWLMPF  334 (434)
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC---CccHHHHHHHHHHHHHHHHHHHccc
Confidence            66667778899885 5699999999999999999999999999999999544   22222211   22212222211212


Q ss_pred             cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccch
Q 009130          420 GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHC  499 (543)
Q Consensus       420 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~  499 (543)
                      .+........+..|++..+........+.|.+|+++++++.|+.+....+|. .++|.+.|++.|..|            
T Consensus       335 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~-~~~p~~~g~l~~~~g------------  401 (434)
T PRK11663        335 ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGA-ALSGYPLAKVLEIWH------------  401 (434)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHH-HHhcccHHHHHHhcc------------
Confidence            2222222223333433222233344567899999999999999999999998 489999999999877            


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHh
Q 009130          500 FMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       500 ~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      |+..|++.+++.+++++..+...
T Consensus       402 ~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        402 WTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888777766554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=4.1e-31  Score=270.62  Aligned_cols=389  Identities=12%  Similarity=0.046  Sum_probs=277.7

Q ss_pred             Ccccc-cccchhhHHHHHHHHHHHHHcC-CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccc
Q 009130            1 MRMEE-RLSTNSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLN   77 (543)
Q Consensus         1 ~~~~~-~~~~~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~   77 (543)
                      |.|+. .+..+++|.++..+.+..+..+ ..+..+...|.+.+|+|+++.+.+++.+...++.. .+++.|++.||+|  
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g--   78 (406)
T PRK11551          1 MSTRTSSASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIG--   78 (406)
T ss_pred             CCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence            45543 3566688988877776666544 35678888999999999999999988777777775 6789999999999  


Q ss_pred             cccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCC
Q 009130           78 HHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYS  156 (543)
Q Consensus        78 ~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~r  156 (543)
                                   ||+++..+.++.+++.++     +.++++   ++.+++.|+++|++.+...+.....+.|++| ++|
T Consensus        79 -------------~r~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r  137 (406)
T PRK11551         79 -------------RKRILIVSVALFGLFSLA-----TAQAWD---FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLR  137 (406)
T ss_pred             -------------CchhHHHHHHHHHHHHHH-----HHHhcc---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHH
Confidence                         999999999998888877     566666   7889999999999999999999999999998 689


Q ss_pred             cchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH-HHhheeccCCCCcccchhhhhHHHHHHHHHHH
Q 009130          157 GTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLL-FMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAY  235 (543)
Q Consensus       157 g~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (543)
                      ++++++...+..+|..+++.+...+.+...|++.+.+..+..++... ...+++                          
T Consensus       138 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------------------  191 (406)
T PRK11551        138 GTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLP--------------------------  191 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCC--------------------------
Confidence            99999999999999999998887776666777766554433222111 111111                          


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccch
Q 009130          236 FMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILK  315 (543)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (543)
                                                            ++++..++  +      +       .++        ++++  
T Consensus       192 --------------------------------------~~~~~~~~--~------~-------~~~--------~~~~--  208 (406)
T PRK11551        192 --------------------------------------ESRAFAQA--A------G-------AGK--------QRAP--  208 (406)
T ss_pred             --------------------------------------CChhHHhc--c------C-------cch--------hhhh--
Confidence                                                  11110000  0      0       000        0000  


Q ss_pred             hhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhc
Q 009130          316 DEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKL  395 (543)
Q Consensus       316 ~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~  395 (543)
                        ......+..+.+..+.+.+..++.....+....+.|.+.++.|+++.+.+...+...++..+++++.|+++||+++| 
T Consensus       209 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~-  285 (406)
T PRK11551        209 --VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR-  285 (406)
T ss_pred             --hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH-
Confidence              00000011112223333333444334445566778999999999999999999999999999999999999999654 


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhh
Q 009130          396 GWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYIC  474 (543)
Q Consensus       396 ~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~  474 (543)
                           +.+..+.+...++++.+. .++...+.+..++.|++.++..+..++++.|.+|+++++++.|+.+....++.. +
T Consensus       286 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~  359 (406)
T PRK11551        286 -----RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSM-A  359 (406)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHH-H
Confidence                 444444444444444443 334444555666778877777788888999999999999999999999999984 8


Q ss_pred             hhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          475 SVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       475 ~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      +|.+.|.+.|..+           ++...++....+.+++.++.+.+
T Consensus       360 g~~~~g~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        360 GPLLAGQLLALGR-----------STVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HhhhHhhhhccCC-----------chHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998765           37777777776666666555544

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.2e-30  Score=270.28  Aligned_cols=416  Identities=13%  Similarity=0.138  Sum_probs=264.5

Q ss_pred             chhhHHHHHHHHHHHHHcC-CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccccc
Q 009130            9 TNSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTR   86 (543)
Q Consensus         9 ~~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~   86 (543)
                      ++++|.++....+...... ..++++...|++.++ |+++.+.+++.+.+.++.. .+++.|++.||+|           
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g-----------   91 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSN-----------   91 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-----------
Confidence            3345665444433332221 234467778999988 9999999977777777765 7889999999999           


Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHH
Q 009130           87 FLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKG  165 (543)
Q Consensus        87 ~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~  165 (543)
                          +|+++.++.++.+++.+++++.. ..+.+   ++.+++.|++.|++.+..++.....+.+|+| ++|++++|+...
T Consensus        92 ----~k~~l~~~~~~~~i~~~~~~~~~-~~~~~---~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  163 (452)
T PRK11273         92 ----PRVFLPAGLILAAAVMLFMGFVP-WATSS---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC  163 (452)
T ss_pred             ----CchhHHHHHHHHHHHHHHHHhhh-ccccc---HHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHH
Confidence                99999999999999888833211 01123   7788889999999999888878888899998 679999999999


Q ss_pred             hhhhhHHHHHHHHH-HhcCCCchhHHHHHHHHHHHHH-HHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHh
Q 009130          166 FVGLSGAVLTQVYK-TVCNGNPSTYILVLALLPTLVS-LLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVME  243 (543)
Q Consensus       166 ~~~lg~~i~~~l~~-~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (543)
                      +.++|+.+.+++.. .+....+|++.+....++.++. ++...++++                                 
T Consensus       164 ~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~---------------------------------  210 (452)
T PRK11273        164 AHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRD---------------------------------  210 (452)
T ss_pred             HHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC---------------------------------
Confidence            99998766555432 3322346666665544333222 222222221                                 


Q ss_pred             hcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHH
Q 009130          244 NLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLL  323 (543)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (543)
                                                     ++++... ++.++.+.+.  +++..++       +.++  .+..+.-..
T Consensus       211 -------------------------------~~~~~~~-~~~~~~~~~~--~~~~~~~-------~~~~--~~~~~~~~~  247 (452)
T PRK11273        211 -------------------------------TPQSCGL-PPIEEYKNDY--PDDYNEK-------HEQE--LTAKQIFMQ  247 (452)
T ss_pred             -------------------------------CHhhcCC-CChhhhhhcc--ccccccc-------cCCC--ccHHHHHHH
Confidence                                           1111000 0000000000  0000000       0000  000001113


Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      ..+|++.+|...+..++.....+....++|.++++ .|++..+++....++.++..+++++.|+++||+++++   |...
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r---~~~~  324 (452)
T PRK11273        248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN---RGAT  324 (452)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---cchH
Confidence            46789999998888877766667778899999976 5999999999999999999999999999999996431   1222


Q ss_pred             HHHHHHHHHHHHHHHh--h-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAIA--S-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRII  479 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~--~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~  479 (543)
                      ......+..++.+++.  . .+.....+..++.|.+...........+.|.+|++++|++.|+.+....+|+.+.+|.+.
T Consensus       325 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~  404 (452)
T PRK11273        325 GVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  404 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence            2222222222222222  1 122223333444454433323334456779999999999999998877787655678899


Q ss_pred             hhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHH
Q 009130          480 GRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIR  535 (543)
Q Consensus       480 g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  535 (543)
                      |.+.|..|            |+..|++.++.++++++....+.+-+||+..|..+|
T Consensus       405 g~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (452)
T PRK11273        405 GYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQK  448 (452)
T ss_pred             HHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhh
Confidence            99999987            999999999888888777666554443333333333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.3e-31  Score=273.87  Aligned_cols=393  Identities=11%  Similarity=0.033  Sum_probs=267.1

Q ss_pred             hhhHHHHHHHHHHHHH-cCCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccc
Q 009130           10 NSKWIATVASIWIQCS-VGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRF   87 (543)
Q Consensus        10 ~~~w~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~   87 (543)
                      |.+|.+++...+...+ .......+...|.+++|+|+++.+++++.+.+.+++. .+++.|++.||+|            
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G------------   71 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIG------------   71 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC------------
Confidence            3456655555554444 3345667888899999999999999988888787775 7889999999999            


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHh
Q 009130           88 LRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGF  166 (543)
Q Consensus        88 ~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~  166 (543)
                         ||+++..+.++++++.++     ++++++   ++.+++.|+++|++.+...+....+++||+| ++||+++++...+
T Consensus        72 ---~r~~~~~~~~~~~~~~~~-----~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  140 (412)
T TIGR02332        72 ---ARRWIAGIMVLWGIASTA-----TMFATG---PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIA  140 (412)
T ss_pred             ---hHHHHHHHHHHHHHHHHH-----HHHhcC---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence               999999999999999999     777776   7899999999999999998888889999999 5799999999999


Q ss_pred             hhhhHHHHHHHHHHhcC------CCchhHHHHHHHHHHHHHHH-HHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHH
Q 009130          167 VGLSGAVLTQVYKTVCN------GNPSTYILVLALLPTLVSLL-FMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVI  239 (543)
Q Consensus       167 ~~lg~~i~~~l~~~l~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (543)
                      .++|.++++++++.+.+      ..+||+.++...++.++..+ ..+++++.|++.    ++....   .          
T Consensus       141 ~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~----~~l~~~---~----------  203 (412)
T TIGR02332       141 MPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA----KWLDEE---D----------  203 (412)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC----CCCCHH---H----------
Confidence            99999999999888763      24799888886666554333 333344433211    000000   0          


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcc
Q 009130          240 TVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEED  319 (543)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (543)
                                                       ++..+++.  ++.     +...+  ++ + ++     .++++. ...
T Consensus       204 ---------------------------------~~~~~~~~--~~~-----~~~~~--~~-~-~~-----~~~~~~-~~~  233 (412)
T TIGR02332       204 ---------------------------------KKALKEMI--DND-----QLTLE--QP-E-GA-----FAHAAM-PQR  233 (412)
T ss_pred             ---------------------------------HHHHHHHH--Hhc-----ccccc--cc-c-cc-----cccccc-cHH
Confidence                                             00000000  000     00000  00 0 00     000000 001


Q ss_pred             hhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhh--CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCC
Q 009130          320 MNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESL--HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGW  397 (543)
Q Consensus       320 ~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~  397 (543)
                      ..+++ ++++.+|...+.+++.....+.+..++|.++++.  |+++.+++.......++..+|++++|+++||+++|   
T Consensus       234 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r---  309 (412)
T TIGR02332       234 SMLRE-IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER---  309 (412)
T ss_pred             HHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc---
Confidence            12233 3468899888888887777888889999999875  67888889999999999999999999999999753   


Q ss_pred             CchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          398 ARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       398 ~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                        +..+....+...+++.+.. ..++...+....+.+++.....+.......|.+|++++++++|+.+....+|. .++|
T Consensus       310 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~-~~~p  386 (412)
T TIGR02332       310 --KHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGS-ALSP  386 (412)
T ss_pred             --HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhh-hhhh
Confidence              2223333333333332222 22222222222233333322233334455678999999999999999999998 4899


Q ss_pred             hhhhhhhhhccCCCCccccccchhHHHHHHHHHH
Q 009130          477 RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFV  510 (543)
Q Consensus       477 ~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~  510 (543)
                      .+.|.+.|..|+           |+.+|++.+++
T Consensus       387 ~~~g~i~~~~g~-----------~~~~~~~~~~~  409 (412)
T TIGR02332       387 FLIGILKDATGS-----------FNSGLWFVAAL  409 (412)
T ss_pred             hhcccccccCCC-----------CchhHHHHHHH
Confidence            999999998863           88888876654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.98  E-value=1.4e-29  Score=246.41  Aligned_cols=356  Identities=13%  Similarity=0.080  Sum_probs=278.1

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      -|...-+.|++.+|+++|..+.|+..+.+.+++. .+++...+.||+.               ||++++....++.++.+
T Consensus        29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~---------------Rr~lLl~~l~lFi~~n~   93 (394)
T COG2814          29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLE---------------RRRLLLGLLALFIVSNL   93 (394)
T ss_pred             HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---------------hHHHHHHHHHHHHHHHH
Confidence            4666778899999999999999966566666654 7889999999999               99999999999999999


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCc
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP  186 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~  186 (543)
                      +     +++++|   |+.+++.|++.|+..|..++....+..+..| +||+++++++.++..++.+++.|++.++-+..+
T Consensus        94 l-----~alAp~---f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814          94 L-----SALAPS---FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             H-----HHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            9     999998   8999999999999999999999999999997 799999999999999999999999999988888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          187 STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      ||+.|.+.....++.++..+...+                                                        
T Consensus       166 WR~~F~~ia~l~ll~~~~~~~~lP--------------------------------------------------------  189 (394)
T COG2814         166 WRATFLAIAVLALLALLLLWKLLP--------------------------------------------------------  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC--------------------------------------------------------
Confidence            988887766555444333222111                                                        


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                               |++.+                                ++++....+..+.+|+|+.|...+..++.....+
T Consensus       190 ---------~~~~~--------------------------------~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F  228 (394)
T COG2814         190 ---------PSEIS--------------------------------GSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHF  228 (394)
T ss_pred             ---------CccCC--------------------------------CCCCcchhHHHHHhcCchHHHHHHHHHHHHcchh
Confidence                     00000                                0000111234788999999999999998888888


Q ss_pred             hhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-h-cCcc
Q 009130          347 ATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-S-GFPG  423 (543)
Q Consensus       347 ~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~-~~~~  423 (543)
                      ....|+.+++++ .|+|.+..++....++++..+|..++|+++|| +.+      ..+.....++.+.++.+. . .++.
T Consensus       229 ~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~------~~l~~~~~l~a~~~l~l~~~~~~~~  301 (394)
T COG2814         229 ALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR------RALIAALLLLALALLALTFTGASPA  301 (394)
T ss_pred             hhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch------hHHHHHHHHHHHHHHHHHHhcchHH
Confidence            888888888876 59999999999999999999999999999999 433      345555555555555444 2 3333


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHH
Q 009130          424 NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLS  503 (543)
Q Consensus       424 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~  503 (543)
                      ...+..++.|+..+..........++ .-+++...+.++...+.++|-. .|..++|.+.|..|            |...
T Consensus       302 ~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia-~GA~lGG~v~~~~g------------~~~~  367 (394)
T COG2814         302 LALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIA-LGAALGGLVLDALG------------YAAT  367 (394)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc------------hHHH
Confidence            44444555666666655555555566 4458888888888888888874 78889999999976            9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Q 009130          504 FMIMAFVAFFGSLVAFLLFLRT  525 (543)
Q Consensus       504 f~~~~~~~~~~~i~~~~~~~~~  525 (543)
                      .++.+.+.+++.++.+...+++
T Consensus       368 ~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         368 GWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998888888776655433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.98  E-value=6.3e-30  Score=256.30  Aligned_cols=351  Identities=12%  Similarity=0.012  Sum_probs=247.7

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      ..++...|.+++|+|+|+.|.+++.+.+.+++. .+++.|++.||+|               ||+++..+.+....+...
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~g---------------rr~~~~~~~~~~~~~~~~   72 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAF---------------KRWFLFGSLATFAAAAGR   72 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------------chHHHHHHHHHHHHHHHH
Confidence            456778899999999999999988888788776 7889999999998               998876655554444322


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           ....++   ++.+++.|+++|+|++. .++....+++|+| ++|++++++...+.++|.+++++++..+.+..+|
T Consensus        73 -----~~~~~~---~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gW  143 (368)
T TIGR00903        73 -----LLDPFN---YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGL  143 (368)
T ss_pred             -----HHHhcc---HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence                 122244   89999999999999996 4556666799998 7899999999999999999999999988877889


Q ss_pred             hHHHHHHHHHHHH-HHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          188 TYILVLALLPTLV-SLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       188 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      |+.++...++.++ .++...+++                                                         
T Consensus       144 r~~f~~~~~l~~~~~~~~~~~lp---------------------------------------------------------  166 (368)
T TIGR00903       144 QLLIIPIAAVAAAGIILVLAALP---------------------------------------------------------  166 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC---------------------------------------------------------
Confidence            8887764433322 221111111                                                         


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                             ++|++++                + . .         +.   ++....+++++++|.+|.+.+..++.....+
T Consensus       167 -------~~p~~~~----------------~-~-~---------~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  209 (368)
T TIGR00903       167 -------ALPFQAA----------------E-G-F---------GF---KDAVKEFGALAGRKDLWIIGAILGFGVALFD  209 (368)
T ss_pred             -------CCCCCCC----------------C-C-c---------ch---HHHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence                   1111000                0 0 0         00   0001235788999999999999999988899


Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNL  425 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~  425 (543)
                      .+..|+|+++++.|++.+ .+....+..+.+.++   .++++||..||.  .|+.......++.++.+..+. ..++...
T Consensus       210 ~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~--~r~~~~~~~~~~~a~~~~~~~~~~~~~~~  283 (368)
T TIGR00903       210 NLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAG--LRSIYIRAAALLIAAFFLALAFELNRLAL  283 (368)
T ss_pred             HHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            999999999998888864 566666666655555   489999987652  223323323333344443333 2233333


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      .....+.+++.....+...++.+|.+|++.|+++.|+.+..+.+++. ++|++.+.+..  +            .+..|.
T Consensus       284 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~-~~~~~~~~~~~--~------------~~~~f~  348 (368)
T TIGR00903       284 FAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISV-ALALAAMLFIS--S------------AEAYFT  348 (368)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHH-HHHHHHHHHhc--C------------HHHHHH
Confidence            44445566667767777888999999999999999999999999984 77777776663  3            667788


Q ss_pred             HHHHHHHHHHHHHH
Q 009130          506 IMAFVAFFGSLVAF  519 (543)
Q Consensus       506 ~~~~~~~~~~i~~~  519 (543)
                      +.++..+++.+..+
T Consensus       349 ~~~~~~~i~~~~~~  362 (368)
T TIGR00903       349 FLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88877777766643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=1.3e-29  Score=257.85  Aligned_cols=350  Identities=10%  Similarity=-0.006  Sum_probs=260.5

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      +....+.|.+.+|+|.|+.+.+++.+.+.++.. .+++.|.+.||+|               ||+++..+.++++++++.
T Consensus        26 ~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~~~~~   90 (390)
T PRK03545         26 FVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVE---------------RRKLLIGLFVLFIASHVL   90 (390)
T ss_pred             HHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------------hHHHHHHHHHHHHHHHHH
Confidence            334456799999999999999987777776665 6889999999999               999999999999999998


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           ++++++   ++.+++.|+++|++.+...+...+.+.+++| +||++++|+...+.++|.++++++.+.+.+..+|
T Consensus        91 -----~~~~~~---~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw  162 (390)
T PRK03545         91 -----SALAWN---FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW  162 (390)
T ss_pred             -----HHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence                 777776   8999999999999999888888899999998 6899999999999999999999999888776778


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ++.+....+..++.......                                                            
T Consensus       163 ~~~f~~~~~~~~l~~~~~~~------------------------------------------------------------  182 (390)
T PRK03545        163 RTTFLAIGGGALITLLLLIK------------------------------------------------------------  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------------------------------------------------------------
Confidence            77776554433221110000                                                            


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                         ..+++   ++                  +          ++.     .....++.+|++.++......++.....+.
T Consensus       183 ---~~~~~---~~------------------~----------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (390)
T PRK03545        183 ---LLPLL---PS------------------E----------HSG-----SLKSLPLLFRRPALVSLYLLTVVVVTAHFT  223 (390)
T ss_pred             ---hCCCC---CC------------------C----------Ccc-----hHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence               00000   00                  0          000     011235678888888766655554444444


Q ss_pred             hhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH-h-hcCcch
Q 009130          348 TMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAI-A-SGFPGN  424 (543)
Q Consensus       348 ~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~-~-~~~~~~  424 (543)
                      ...+.+++.++ .|+|+.+++...++..+++.+++++.|+++||+++|      .. ..+..+..++...+ . .++...
T Consensus       224 ~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------~~-~~~~~~~~~~~~~l~~~~~~~~~  296 (390)
T PRK03545        224 AYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG------FL-LIAIALLLVCLLLLLPAANSEWH  296 (390)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh------HH-HHHHHHHHHHHHHHHHHhchHHH
Confidence            55666777766 599999999999999999999999999999998543      33 33333333333322 2 334445


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHH
Q 009130          425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSF  504 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f  504 (543)
                      +++..++.|++.+...+.....+.+..| ++++.+.|+.+....+|.. +||.+.|.+.|..|            ++..|
T Consensus       297 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~G~~~~G~~~~~~g------------~~~~~  362 (390)
T PRK03545        297 LSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIG-AGALLGNQVSLHLG------------LSSIG  362 (390)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC------------hhHHH
Confidence            5666777788776666666677777766 6889999999888888874 79999999999987            99999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 009130          505 MIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       505 ~~~~~~~~~~~i~~~~~~  522 (543)
                      ++.+.+.+++.+..+...
T Consensus       363 ~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        363 YVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999988888877765554

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=1.9e-29  Score=260.03  Aligned_cols=364  Identities=12%  Similarity=0.039  Sum_probs=254.1

Q ss_pred             chhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccccc
Q 009130            9 TNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTR   86 (543)
Q Consensus         9 ~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~   86 (543)
                      .+++|..++.+.+.....+. .+..+...|.+++|+|+++.+.+++.+.+.++.. .+++.|++.||+|           
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g-----------   81 (426)
T PRK12307         13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFG-----------   81 (426)
T ss_pred             CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------
Confidence            34556555555544444443 3455677799999999999999988777777776 6889999999999           


Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHH
Q 009130           87 FLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKG  165 (543)
Q Consensus        87 ~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~  165 (543)
                          ||+++..+.++.+++.++     ++++++   ++.+++.|+++|+|.+..++....++.|++| ++|++++++...
T Consensus        82 ----~r~~l~~~~~~~~~~~~~-----~~~~~~---~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~  149 (426)
T PRK12307         82 ----RKPLMMWSIVAYSVGTGL-----SGLASG---VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVS  149 (426)
T ss_pred             ----ChHHHHHHHHHHHHHHHH-----HHHHhH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHH
Confidence                999999999999999988     666666   7999999999999999999999999999998 679999999999


Q ss_pred             hhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhc
Q 009130          166 FVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENL  245 (543)
Q Consensus       166 ~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (543)
                      +.++|.++++.+...+.+..+|++.+....++.++.+.   +....|+                                
T Consensus       150 ~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~---~~~~~p~--------------------------------  194 (426)
T PRK12307        150 GFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIY---IRARAPE--------------------------------  194 (426)
T ss_pred             HHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH---HHHHCCC--------------------------------
Confidence            99999999999988887777888888765544332111   0000010                                


Q ss_pred             ccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHh
Q 009130          246 LTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQA  325 (543)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (543)
                                                   ++ ++++  ++    .+     ++.++         ++...+......++.
T Consensus       195 -----------------------------~~-~~~~--~~----~~-----~~~~~---------~~~~~~~~~~~~~~~  224 (426)
T PRK12307        195 -----------------------------SK-EWEE--AK----LS-----GKGKH---------SQSAWSVFSLSMKGL  224 (426)
T ss_pred             -----------------------------Ch-HHHH--hh----hh-----ccccc---------cccchhhhhHHHHHH
Confidence                                         00 0000  00    00     00000         000001112345677


Q ss_pred             hcchhHHHHHHHHH---hhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          326 MCTGNFWFLCIATL---CGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       326 ~~~~~f~~~~l~~~---~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      ++++.++.......   ...+..+.+..++|.+.++.|+++.+.+...++..++..+++++.|++.||++||      +.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------~~  298 (426)
T PRK12307        225 FNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK------KT  298 (426)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HH
Confidence            88887765443322   2223333456678888888899999999999999999999999999999999654      45


Q ss_pred             HHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhh--hhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVC--YGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRII  479 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~--~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~  479 (543)
                      +..+.++..+.++.+. ..+.....+..++.+++  ..+..+..+.++.|.+|++++|++.|+.+....+++ .++|.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~-~~gp~~~  377 (426)
T PRK12307        299 FSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSG-TFNSMAA  377 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHH-HHHHHHH
Confidence            5555555544443333 22222222233334432  223345667788999999999999999988888888 4899999


Q ss_pred             hhhhhhcc
Q 009130          480 GRIYDRVA  487 (543)
Q Consensus       480 g~l~~~~g  487 (543)
                      |++.|..|
T Consensus       378 g~l~~~~g  385 (426)
T PRK12307        378 TWLGITMG  385 (426)
T ss_pred             HHHHHccc
Confidence            99999876

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=9.7e-30  Score=264.67  Aligned_cols=369  Identities=15%  Similarity=0.132  Sum_probs=244.5

Q ss_pred             CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHH
Q 009130           28 TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGY  106 (543)
Q Consensus        28 ~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~  106 (543)
                      ..+.++.+.|.+.+|+|++.++.+++.+.+.+++. .+++.|++.||+|               ||+++..+.++++++.
T Consensus        51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G---------------~r~~~~~~~~~~~~~~  115 (476)
T PLN00028         51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYG---------------PRYGSAFLLMLTAPAV  115 (476)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------ChHHHHHHHHHHHHHH
Confidence            35677888899999999999999977777777776 5789999999999               9999999999999988


Q ss_pred             HHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhc---
Q 009130          107 FLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVC---  182 (543)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~---  182 (543)
                      ++     ++++++   ++.+++.|+++|++.+.. .+....+++|+| ++||+++|+......+|..+++.+...+.   
T Consensus       116 ~~-----~~~~~s---~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~  186 (476)
T PLN00028        116 FC-----MSLVSS---ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLI  186 (476)
T ss_pred             HH-----HHHhcC---HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88     666666   688888999999988764 445567899998 68999999998777777777665543321   


Q ss_pred             -CC-----CchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Q 009130          183 -NG-----NPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIIT  256 (543)
Q Consensus       183 -~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (543)
                       +.     .+||+.+.+..+..++..+...+                                                 
T Consensus       187 ~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~-------------------------------------------------  217 (476)
T PLN00028        187 KDAGAPSFTAWRIAFFVPGLLHIIMGILVLT-------------------------------------------------  217 (476)
T ss_pred             HhcCCcchhhhHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
Confidence             11     24555554433322221111000                                                 


Q ss_pred             HHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHH
Q 009130          257 FIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCI  336 (543)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l  336 (543)
                                    ..+++|++..              ++.+.+         .+.+ +.+....+++.++++++|.+.+
T Consensus       218 --------------~~~~~p~~~~--------------~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~  259 (476)
T PLN00028        218 --------------LGQDLPDGNY--------------RELKKS---------GTMP-KDSFSKVLRYGVTNYRTWILAL  259 (476)
T ss_pred             --------------HcCcCCCCch--------------hhHHhc---------Cccc-cccHHHHHHHHHcCchhHHHHH
Confidence                          0011111000              000000         0000 0011123567788999998888


Q ss_pred             HHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCC-CchHHHHHHHHHHHHHH
Q 009130          337 ATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGW-ARPIFMVITLVAMSIGH  414 (543)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~-~r~~~~~~~~~~~~i~~  414 (543)
                      .+++.....+.+..++|.++.+ .|+++.+++.+.++..+++.++++++|+++||+++|+.. .|+....+..++..+.+
T Consensus       260 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~  339 (476)
T PLN00028        260 TYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFC  339 (476)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Confidence            7776666666677788888755 599999999999999999999999999999999987432 24444444444444433


Q ss_pred             HHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcc
Q 009130          415 IAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHT  493 (543)
Q Consensus       415 ~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~  493 (543)
                      +++. ..+.....+..++.+++.+...+...+++++. +++++|+++|+.+..+.+|+. ++|.+    .+..+      
T Consensus       340 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~-i~~~l----~~~~~------  407 (476)
T PLN00028        340 IWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFV-SRRSLGVISGLTGAGGNVGAV-LTQLL----FFTGS------  407 (476)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCccc-ChhhchhhhhhhhccccHHHH-HHHHH----HHhcC------
Confidence            3333 22323334444555665554444455555665 457999999999887777774 45444    33221      


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          494 CYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       494 ~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                         ..+|+.+|++.+++.+++.++.++++
T Consensus       408 ---~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        408 ---SYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             ---CccHhhHHHHHHHHHHHHHHHHHhee
Confidence               12499999999988888877776654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=1.5e-29  Score=269.87  Aligned_cols=441  Identities=11%  Similarity=0.043  Sum_probs=286.8

Q ss_pred             cchhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccc
Q 009130            8 STNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRT   85 (543)
Q Consensus         8 ~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~   85 (543)
                      ..++.|.+++++.+..+..+. ....+...|.+.++++++..+.+++.+...++.. ..+++|+++||+|          
T Consensus       161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~G----------  230 (742)
T TIGR01299       161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLG----------  230 (742)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------
Confidence            356677776666655554443 4456778899999999999999988777777776 6779999999999          


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHH
Q 009130           86 RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILK  164 (543)
Q Consensus        86 ~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~  164 (543)
                           ||++++++.++.+++.++     ++++++   ++.++++|+++|+|.|+..+....++++++| ++||+++++..
T Consensus       231 -----RR~~lii~lil~~i~~ll-----~afa~s---~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~  297 (742)
T TIGR01299       231 -----RKQCLLICLSVNGFFAFF-----SSFVQG---YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC  297 (742)
T ss_pred             -----cHHHHHHHHHHHHHHHHH-----HHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence                 999999999999998888     666666   7899999999999999999999999999999 67999999999


Q ss_pred             HhhhhhHHHHHHHHHHhcCC-------------CchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHH
Q 009130          165 GFVGLSGAVLTQVYKTVCNG-------------NPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMT  231 (543)
Q Consensus       165 ~~~~lg~~i~~~l~~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (543)
                      ++..+|.++++.++..+...             ..|++.+++..+|.++.++...++++.|..-..+.+...+...+.. 
T Consensus       298 ~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~-  376 (742)
T TIGR01299       298 MFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKL-  376 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHH-
Confidence            99999999998877665421             3588988888888888877776766554311011111111100000 


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCC-CCCCCCccccCCCccchhcccc
Q 009130          232 LAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTP-QQDPLAYHELADDESKVTAAFD  310 (543)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  310 (543)
                               +...+...                        +..+++.....+.+.. ..++..+.+ .+......+...
T Consensus       377 ---------i~~~n~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  422 (742)
T TIGR01299       377 ---------IHDTNMRA------------------------KGHPEKVFSVNHIKTIHQEDELIEIE-SDTGTWYQRCFV  422 (742)
T ss_pred             ---------HhcCCCCC------------------------cCchhHHHHHHHHHHhhhhhhhhccc-ccccchhhcchh
Confidence                     00000000                        0000000000000000 000000000 000000000000


Q ss_pred             cc-cchhhcchhHHHhhcc---hhHHHHHHHHHhhhchhhhhhhchHHHHHhh---C-------------------CCc-
Q 009130          311 DK-ILKDEEDMNLLQAMCT---GNFWFLCIATLCGMGSGIATMNNIAQVGESL---H-------------------YST-  363 (543)
Q Consensus       311 ~~-~~~~~~~~~~~~~~~~---~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~---g-------------------~s~-  363 (543)
                      .. .........++++++.   +..+.+++..|...+.++++..|+|.++++.   +                   ++. 
T Consensus       423 ~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (742)
T TIGR01299       423 RALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLE  502 (742)
T ss_pred             hhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchh
Confidence            00 0000001123333332   2345566666777778888999999875431   0                   000 


Q ss_pred             --------------------------------------------------------------------------------
Q 009130          364 --------------------------------------------------------------------------------  363 (543)
Q Consensus       364 --------------------------------------------------------------------------------  363 (543)
                                                                                                      
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  582 (742)
T TIGR01299       503 NQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEG  582 (742)
T ss_pred             hhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCc
Confidence                                                                                            


Q ss_pred             ------------hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcchHHHHHH
Q 009130          364 ------------TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPGNLFVGTM  430 (543)
Q Consensus       364 ------------~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~  430 (543)
                                  ........+.+++.++|.++.|+++||+|||      +++..+.++.+++++++.. .+...+++..+
T Consensus       583 c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr------~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~  656 (742)
T TIGR01299       583 CPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRL------RMLAGSMVLSCISCFFLSFGNSESAMIALLC  656 (742)
T ss_pred             cCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence                        0112334566788899999999999999654      6777787777777766553 34444555566


Q ss_pred             HHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHH
Q 009130          431 IVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFV  510 (543)
Q Consensus       431 l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~  510 (543)
                      +.+++.++.++...++++|.+|++.|++++|+.+....+|+ +++|++.+.+.+..             ...+|++.+++
T Consensus       657 l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGa-iigp~i~g~L~~~~-------------~~~pf~i~a~~  722 (742)
T TIGR01299       657 LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAA-VLGILIFGSFVGIT-------------KAAPILFASAA  722 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh-------------hHHHHHHHHHH
Confidence            77887777888888999999999999999999999999999 58999998887653             55678888777


Q ss_pred             HHHHHHHHHHHhhcchh
Q 009130          511 AFFGSLVAFLLFLRTRR  527 (543)
Q Consensus       511 ~~~~~i~~~~~~~~~~~  527 (543)
                      .++++++.+++ +++++
T Consensus       723 lll~~ll~~~L-PET~~  738 (742)
T TIGR01299       723 LACGGLLALKL-PDTRG  738 (742)
T ss_pred             HHHHHHHHHhC-CCCcc
Confidence            77777666655 55544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.97  E-value=1e-28  Score=258.63  Aligned_cols=399  Identities=13%  Similarity=0.049  Sum_probs=277.1

Q ss_pred             hhHHHHHHHHHHHHH-cCCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccccccc
Q 009130           11 SKWIATVASIWIQCS-VGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFL   88 (543)
Q Consensus        11 ~~w~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~   88 (543)
                      ++|.+++...+..+. .-.....++..|.+.+|+|.+..+.+|+.+.+.++.. ..++.|+++||+|             
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~G-------------   69 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIG-------------   69 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            355555444443333 2234567788899999999999999988888888875 6789999999999             


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhc-C-CCCcchhHHHHHh
Q 009130           89 RGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNF-G-HYSGTIVGILKGF  166 (543)
Q Consensus        89 ~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~f-p-~~rg~~~gi~~~~  166 (543)
                        ||+++.++.+++++++++     ++++++   ++.++++|+++|+|.+...+.....+.+++ | ++|++++|+....
T Consensus        70 --rk~~l~~~~~~~~~~~~~-----~~~a~~---~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~  139 (495)
T PRK14995         70 --FKRLLMLGGTLFGLASLA-----AAFSPT---ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAV  139 (495)
T ss_pred             --cHHHHHHHHHHHHHHHHH-----HHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              999999999999999999     888877   899999999999999998888888888887 5 5799999999999


Q ss_pred             hhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHh-heeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhc
Q 009130          167 VGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMS-HVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENL  245 (543)
Q Consensus       167 ~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (543)
                      .++|..++|.+++.+.+..+|+|.++......++.++... ++++.+.++   ++..+....+....+.........+..
T Consensus       140 ~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~---~~~~d~~g~~~~~~~~~~l~~~~~~~~  216 (495)
T PRK14995        140 GSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR---DQPLNLGHALMLIVAILLLVYSAKTAL  216 (495)
T ss_pred             HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC---CCCCChHhHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999888999999887655555444333 333322211   111121111111111112222222221


Q ss_pred             ccc-hhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHH
Q 009130          246 LTF-SLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQ  324 (543)
Q Consensus       246 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (543)
                      .++ +.|..........+.+..+..   ++.   +.                               +     +..-..+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~l~~f~~---~e~---~~-------------------------------~-----~p~~~~~  254 (495)
T PRK14995        217 KGFLSLWVTSLTLLTGALLLGLFIR---TQL---AA-------------------------------S-----RPMIDMR  254 (495)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHHHH---HHh---cC-------------------------------C-----CCCcCHH
Confidence            222 222212111111111111110   000   00                               0     0011256


Q ss_pred             hhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          325 AMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       325 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      .+|++.++...+..++.....+....+.|.+++. .|+|+.+++....+..++..++.++.|++.||+++|      +.+
T Consensus       255 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~------~~~  328 (495)
T PRK14995        255 LFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR------LVA  328 (495)
T ss_pred             HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHH
Confidence            7888988887777776666666667778888876 699999999999999999999999999999999653      566


Q ss_pred             HHHHHHHHHHHHHHh-h---cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhh
Q 009130          404 VITLVAMSIGHIAIA-S---GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRII  479 (543)
Q Consensus       404 ~~~~~~~~i~~~~~~-~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~  479 (543)
                      ..+.++.+++..++. .   .+....+...++.|++.|...+.....+.+..|+++++.+.++.++...+|+. +|+.+.
T Consensus       329 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~-~G~ai~  407 (495)
T PRK14995        329 TGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG-LGIAIF  407 (495)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH-HHHHHH
Confidence            666666666655443 1   22233455677889999988887888888899999999999999888888874 677777


Q ss_pred             hhhhh
Q 009130          480 GRIYD  484 (543)
Q Consensus       480 g~l~~  484 (543)
                      |.+.+
T Consensus       408 g~i~~  412 (495)
T PRK14995        408 GLLLS  412 (495)
T ss_pred             HHHHH
Confidence            77654

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=4.2e-29  Score=254.40  Aligned_cols=355  Identities=10%  Similarity=0.077  Sum_probs=260.8

Q ss_pred             CCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHH
Q 009130           27 GTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTG  105 (543)
Q Consensus        27 g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g  105 (543)
                      +..+.++...|.+.+++|+|.++.+++.+...++.. .+++.|++.||+|               ||+++..+.++.+++
T Consensus        21 ~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g---------------~r~~~~~~~~~~~i~   85 (394)
T PRK03699         21 ALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIP---------------LKRQLIFGFALMILA   85 (394)
T ss_pred             HHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHHH
Confidence            345678889999999999999999977777777765 6779999999999               999999999999999


Q ss_pred             HHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC-
Q 009130          106 YFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN-  183 (543)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~-  183 (543)
                      .++     ++++++   ++.+++.|+++|++.+...+.....+.+++| ++|+++++......++|+.++|.+.+.+.. 
T Consensus        86 ~~l-----~~~~~~---~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (394)
T PRK03699         86 VAG-----LMFSHS---LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR  157 (394)
T ss_pred             HHH-----HHHcch---HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            988     666665   7889999999999999888888889999998 579999999999999999999988887764 


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 009130          184 GNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLL  263 (543)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (543)
                      ..+|++.+....++.++..+...+                                                        
T Consensus       158 ~~gw~~~f~~~~~~~~~~~~~~~~--------------------------------------------------------  181 (394)
T PRK03699        158 SIEWYWVYACIGLVYVAIFILTLF--------------------------------------------------------  181 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHh--------------------------------------------------------
Confidence            357877776544433221111100                                                        


Q ss_pred             hhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhc
Q 009130          264 LASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMG  343 (543)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~  343 (543)
                               ++.|+.++   +      +       + ++       +++. .       ++ ..++.+|...+..++...
T Consensus       182 ---------~~~p~~~~---~------~-------~-~~-------~~~~-~-------~~-~~~~~~~~~~~~~~~~~~  219 (394)
T PRK03699        182 ---------SEFPALGK---H------A-------P-KA-------DKPV-A-------KE-KWGIGVLFLAIAALLYIL  219 (394)
T ss_pred             ---------cCCccccc---c------C-------c-cc-------cCcc-c-------cc-cCChHHHHHHHHHHHHHH
Confidence                     01111000   0      0       0 00       0000 0       00 113566766666666656


Q ss_pred             hhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcC
Q 009130          344 SGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGF  421 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~  421 (543)
                      ..+.+..+.|.++++ .|+|+.+++...+.+.++..+|+++.|+++||+++|      +.+.....+..+.+.++. .++
T Consensus       220 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~------~~l~~~~~~~~~~~~~~~~~~~  293 (394)
T PRK03699        220 AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ------RILTVLAGLALVLMYLFVNTDD  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh------hHHHHHHHHHHHHHHHHHHcCC
Confidence            666778899999965 699999999999999999999999999999999654      344444444444444443 344


Q ss_pred             cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhH
Q 009130          422 PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFM  501 (543)
Q Consensus       422 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~  501 (543)
                      .....+..++.|++.+..++...+...+..+ +++++..|.......+|. .++|.+.|++.|..|            ++
T Consensus       294 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~-~i~p~~~G~l~~~~g------------~~  359 (394)
T PRK03699        294 PSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGT-MLTFVVTSPIVAHFG------------LQ  359 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHH-HHHHHHHHHHHHHhC------------ch
Confidence            4455556777888888777777777777665 556788888888888888 589999999999887            88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 009130          502 LSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       502 ~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      ..+++.+++++++.++.+.+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        360 AALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             hhhhhhHHHHHHHHHHHHHHH
Confidence            899888888887776655554

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=1.8e-29  Score=257.00  Aligned_cols=377  Identities=14%  Similarity=0.036  Sum_probs=266.3

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      +.++...|.+.+++|.++.+.+++.+...++.. ..++.|.+.||+|               ||+++..+.++.+++..+
T Consensus        11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g---------------~r~~~~~~~~~~~~~~~~   75 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFG---------------ARKTLAVFIVIWGVFTGL   75 (399)
T ss_pred             HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcC---------------cceeeHHHHHHHHHHHHH
Confidence            456777799999999999999988777777775 6889999999999               999999999999999888


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           .+++++   ++.+++.|+++|++.+...+....++.|++| ++|++++++.....++|..+++++.+.+.+...|
T Consensus        76 -----~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  147 (399)
T TIGR00893        76 -----QAFAGA---YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSW  147 (399)
T ss_pred             -----HHHHcC---HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCc
Confidence                 556666   7999999999999999999999999999998 6899999999999999999999999988877778


Q ss_pred             hHHHHHHHHHHHHHHHHHh-heeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          188 TYILVLALLPTLVSLLFMS-HVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      ++.+....+..++..+... ..++.++                                                     
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------  174 (399)
T TIGR00893       148 QWAFIIEGVLGIIWGVLWLKFIPDPPQ-----------------------------------------------------  174 (399)
T ss_pred             hHHHHHHHHHHHHHHHHhhheecCCCC-----------------------------------------------------
Confidence            8777665544333222211 1111111                                                     


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                                 +.+..++++   ++...++. ..+.       +++++++......++.++++.++...+..++......
T Consensus       175 -----------~~~~~~~~~---~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (399)
T TIGR00893       175 -----------KAKWLTEEE---KYIVVGGL-LAEQ-------QGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLG  232 (399)
T ss_pred             -----------ccccCCHHH---Hhhcchhh-cccc-------ccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHH
Confidence                       000000000   00000000 0000       0001111122345778899999998888888777777


Q ss_pred             hhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHH-HHHHHH-H-HHHHHHhh--c
Q 009130          347 ATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMV-ITLVAM-S-IGHIAIAS--G  420 (543)
Q Consensus       347 ~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~-~~~~~~-~-i~~~~~~~--~  420 (543)
                      .+..+.|.+.++ .|.++.+.+...+...+++.+++++.|+++||+++|+.   ..... ...... . .+......  .
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (399)
T TIGR00893       233 FFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGK---SLVFARKTAIIAGLVLSLLMFATNYV  309 (399)
T ss_pred             HHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHHhccc
Confidence            788888888865 69999999999999999999999999999999987631   11111 111111 1 11111111  1


Q ss_pred             CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130          421 FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF  500 (543)
Q Consensus       421 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~  500 (543)
                      +.....+...+.+.+..+..+....++.|.+|+++++++.|+.+....+|. .++|.+.|.+.|..|+           |
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~i~g~l~~~~g~-----------~  377 (399)
T TIGR00893       310 NIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG-IVGPIVIGAIAATTGS-----------F  377 (399)
T ss_pred             hhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh-hhhhHHhhhhccCCCc-----------h
Confidence            122223333333333333677788899999999999999999999999998 4889999999998763           8


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 009130          501 MLSFMIMAFVAFFGSLVAF  519 (543)
Q Consensus       501 ~~~f~~~~~~~~~~~i~~~  519 (543)
                      +..|++.+++.+++.+..+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       378 AGALMVVAALALIGALSYL  396 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            8888888887777766544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.8e-29  Score=241.25  Aligned_cols=385  Identities=12%  Similarity=0.051  Sum_probs=266.2

Q ss_pred             ccccchhhHHHHHHHHHHH-HHcCCccccccccHHHHhhcCCChhhHHHHHHHh-hhcccccchhhHhhhhccccccccc
Q 009130            5 ERLSTNSKWIATVASIWIQ-CSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFK-DMGGSAGILSGLLFSYVTLNHHHHQ   82 (543)
Q Consensus         5 ~~~~~~~~w~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~-~~~~~~~~~~G~l~d~~g~~~~~~~   82 (543)
                      +...|+.++..+....+.. ++...-+.++++.+.+.+|+|+|+.|.+++...- ..+....++.|.+.||||       
T Consensus         5 ~~~~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfG-------   77 (417)
T COG2223           5 EARGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFG-------   77 (417)
T ss_pred             HhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccC-------
Confidence            3344444444444443322 2223346688888999999999999999655554 455568999999999999       


Q ss_pred             ccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhH
Q 009130           83 TRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVG  161 (543)
Q Consensus        83 ~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g  161 (543)
                              .|++..++.++..+-.+.++     ++.+..+++++++.+++.|++.+ .+.+....+++||| +++|.++|
T Consensus        78 --------gR~~~~~s~~l~~IP~~~~~-----~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlG  143 (417)
T COG2223          78 --------GRKWTILSMLLLLIPCLGLA-----FAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALG  143 (417)
T ss_pred             --------chHHHHHHHHHHHHHHHHHH-----HHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHH
Confidence                    99999999999999988844     33332247899999999999865 56778889999999 57999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHH
Q 009130          162 ILKGFVGLSGAVLTQVYKTVCNGNP---STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMV  238 (543)
Q Consensus       162 i~~~~~~lg~~i~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (543)
                      +.. ..++|..+...++..+...-.   |+....+.+++.++..                                    
T Consensus       144 I~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~------------------------------------  186 (417)
T COG2223         144 IAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAA------------------------------------  186 (417)
T ss_pred             Hhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH------------------------------------
Confidence            999 666888777666555432211   2211111111111111                                    


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhc
Q 009130          239 ITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEE  318 (543)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (543)
                                                 +..+...++.|+.++                            ..++    ..
T Consensus       187 ---------------------------v~~~~~~~d~p~~r~----------------------------~~~~----~~  207 (417)
T COG2223         187 ---------------------------VLAWLGMNDVPEHRA----------------------------SVKP----QL  207 (417)
T ss_pred             ---------------------------HHHHHHhCCChhhhc----------------------------cccc----cc
Confidence                                       111111112111111                            0000    00


Q ss_pred             chhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCC
Q 009130          319 DMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGW  397 (543)
Q Consensus       319 ~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~  397 (543)
                      +...+.+.++++.|.+.+.++...+.+.++..++|.++++ +|.++.+++.+...+.+.+.+.|+++|+++||+|.+   
T Consensus       208 ~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~---  284 (417)
T COG2223         208 PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR---  284 (417)
T ss_pred             hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch---
Confidence            0345677889999999999999999999999999999976 699999999999999999999999999999999743   


Q ss_pred             CchHHHHHHHHHHHHHHHHHh-hc-------CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhh
Q 009130          398 ARPIFMVITLVAMSIGHIAIA-SG-------FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPV  469 (543)
Q Consensus       398 ~r~~~~~~~~~~~~i~~~~~~-~~-------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i  469 (543)
                         ++..+....++++..... ..       +....+...+..+++.|.......-+++.+++ ++.|.+.|++...+++
T Consensus       285 ---rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~l  360 (417)
T COG2223         285 ---RVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGL  360 (417)
T ss_pred             ---hHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccc
Confidence               344555555555555444 21       12223333333344444444445556667776 4899999999999999


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009130          470 GSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRT  525 (543)
Q Consensus       470 g~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  525 (543)
                      |++ +-|...|...|.+|+           |...|++...+.+++.+.....+.|.
T Consensus       361 GGf-~lp~~~g~~~~~tg~-----------~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         361 GGF-FLPLAFGVSLDLTGS-----------YTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             ccc-chhHHHHHHHHhccc-----------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            995 678899999999884           99999999999999888776665443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.97  E-value=1.6e-28  Score=253.48  Aligned_cols=405  Identities=15%  Similarity=0.168  Sum_probs=263.9

Q ss_pred             hhHHHHHHHHHHHHHc-CCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccccccc
Q 009130           11 SKWIATVASIWIQCSV-GTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFL   88 (543)
Q Consensus        11 ~~w~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~   88 (543)
                      .+|.++....+..... ...+.+....|.+++ +|.++++.+++.+...++.. .+++.|++.||+|             
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g-------------   89 (438)
T TIGR00712        24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSN-------------   89 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccC-------------
Confidence            3565554444433322 233445666788876 59999999977777777765 6889999999999             


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHh
Q 009130           89 RGPWVVHFTGAILCFTGYFLVWASVVGLLPRP-VPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGF  166 (543)
Q Consensus        89 ~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~  166 (543)
                        ||+++..+.++.+++.++     .+..++. ++++.+++.|++.|++.+..++.....+.+++| ++||+++|+...+
T Consensus        90 --~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~  162 (438)
T TIGR00712        90 --PRVFLPAGLILSAAVMLL-----MGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCA  162 (438)
T ss_pred             --CceehHHHHHHHHHHHHH-----HhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHH
Confidence              999999999999998887     3332210 026777889999999999988888889999997 6899999999999


Q ss_pred             hhhhHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHH-HHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhh
Q 009130          167 VGLSGAVLTQVYKTVCN-GNPSTYILVLALLPTLVS-LLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMEN  244 (543)
Q Consensus       167 ~~lg~~i~~~l~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (543)
                      .++|+.+++++...... ...|++.+....+..++. ++...++++                                  
T Consensus       163 ~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~----------------------------------  208 (438)
T TIGR00712       163 HNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRD----------------------------------  208 (438)
T ss_pred             HHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccC----------------------------------
Confidence            99999999988776543 346777666554443332 222222221                                  


Q ss_pred             cccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHH
Q 009130          245 LLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQ  324 (543)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (543)
                                                    ++++.+ .++.++.+.+    .  .++..+   + .+.+ .+.++.-.+.
T Consensus       209 ------------------------------~~~~~~-~~~~~~~~~~----~--~~~~~~---~-~~~~-~~~~~~~~~~  246 (438)
T TIGR00712       209 ------------------------------TPQSCG-LPPIEEYRND----Y--PDDYNE---K-AEQE-LTAKEIFMQY  246 (438)
T ss_pred             ------------------------------CHHhcC-CCCchhcccc----c--cccccc---c-cccc-cchHHHHHHH
Confidence                                          111100 0000000000    0  000000   0 0000 0001111234


Q ss_pred             hhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          325 AMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       325 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      .++++.+|...+..++.....+....+.|.++++ .|+++.++++...++.+.++++++++|+++||+++++   |....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~---~~~~~  323 (438)
T TIGR00712       247 VLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN---RGATG  323 (438)
T ss_pred             HccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---ccHHH
Confidence            6789999998887777666666777889999986 5999999999999999999999999999999996542   11211


Q ss_pred             HHHHHHHHHHHHHHh-h--cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhh
Q 009130          404 VITLVAMSIGHIAIA-S--GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIG  480 (543)
Q Consensus       404 ~~~~~~~~i~~~~~~-~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g  480 (543)
                      ........++...+. .  .+........++.|++..+........+.|.+|+++++++.|+.+....+++..++|.+.|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G  403 (438)
T TIGR00712       324 VFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  403 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH
Confidence            111111222222222 1  1222222333344443322222223457799999999999999988777775457899999


Q ss_pred             hhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 009130          481 RIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRR  527 (543)
Q Consensus       481 ~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~  527 (543)
                      .+.|..|            |+..|++..+..+++.+..+++.+++||
T Consensus       404 ~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       404 YTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHhcc------------chHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            9999887            9999999988888888888887776653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=2.1e-28  Score=255.99  Aligned_cols=371  Identities=13%  Similarity=0.069  Sum_probs=237.7

Q ss_pred             ccccccccHHHHhhcCCChhhH-HHH-----HHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTL-ERV-----AVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAIL  101 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~-~~~-----~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~  101 (543)
                      .+.++...|.+.++|+.+.++. +++     .+...++.. .+++.|++.||+|               ||+++.++.++
T Consensus        32 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~G---------------rr~~l~~~~~l   96 (490)
T PRK10642         32 FGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYG---------------RQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------cHHHHHHHHHH
Confidence            4557778899999997544332 222     233334443 6889999999999               99999999999


Q ss_pred             HHHHHHHHHHHHhccCCCCChHH--------HHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHH
Q 009130          102 CFTGYFLVWASVVGLLPRPVPVP--------LMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGA  172 (543)
Q Consensus       102 ~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~  172 (543)
                      +++++++     ++++++   +.        .++++|+++|+|.|..++....+++||+| ++||++.++...+..+|..
T Consensus        97 ~~i~~~~-----~a~~~~---~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~  168 (490)
T PRK10642         97 MSISTFC-----IGLIPS---YATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV  168 (490)
T ss_pred             HHHHHHH-----HHhccc---HHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence            9999999     888887   44        37889999999999999999999999998 7899999999988888888


Q ss_pred             HHHHHHHHhc--------CCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhh
Q 009130          173 VLTQVYKTVC--------NGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMEN  244 (543)
Q Consensus       173 i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (543)
                      +++.+...+.        ...+||+.++++.++.++++.....+   |++                              
T Consensus       169 lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~---~es------------------------------  215 (490)
T PRK10642        169 LGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHAL---EET------------------------------  215 (490)
T ss_pred             HHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcC---CCC------------------------------
Confidence            8776554332        24578888877665444322211111   111                              


Q ss_pred             cccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHH
Q 009130          245 LLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQ  324 (543)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (543)
                                                     |+..+..++.+            +++++.     .++    ..+.++++
T Consensus       216 -------------------------------p~~~~~~~~~~------------~~~~~~-----~~~----~~~~~~~~  243 (490)
T PRK10642        216 -------------------------------PAFQQHVDKLE------------QGDREG-----LQD----GPKVSFKE  243 (490)
T ss_pred             -------------------------------hhHHHHHHhhh------------hhcccc-----ccc----cccCCHHH
Confidence                                           00000000000            000000     000    00112233


Q ss_pred             hhc-chhHHHHH-HHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchH
Q 009130          325 AMC-TGNFWFLC-IATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPI  401 (543)
Q Consensus       325 ~~~-~~~f~~~~-l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~  401 (543)
                      .++ ++..+... ...++.....+.+..++|.++++ .|++..+.........++..++.++.|+++||+|||      +
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr------~  317 (490)
T PRK10642        244 IATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR------P  317 (490)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------H
Confidence            333 22222222 22233344556677788998854 699988888888888899999999999999999654      4


Q ss_pred             HHHHHHHHHHH-HHHHH--hh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhh
Q 009130          402 FMVITLVAMSI-GHIAI--AS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVR  477 (543)
Q Consensus       402 ~~~~~~~~~~i-~~~~~--~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~  477 (543)
                      .+..+.++..+ +..++  .. .+...+++..++.|++.+...+..+.+++|.+|++.|+++.|+.+....+++ .++|.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~  396 (490)
T PRK10642        318 FVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPT  396 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHH
Confidence            55555443222 22212  12 2233445556667777776667777888999999999999998544444555 36788


Q ss_pred             hhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 009130          478 IIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTR  526 (543)
Q Consensus       478 l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  526 (543)
                      +.+++.+..+.           +...+++..+..+++++..+++ +|++
T Consensus       397 i~g~l~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~-pes~  433 (490)
T PRK10642        397 LAAWLVESTQN-----------LMMPAYYLMVVAVIGLITGVTM-KETA  433 (490)
T ss_pred             HHHHHHHHhCC-----------chHHHHHHHHHHHHHHHHHHHh-cccc
Confidence            89998886552           5556555555566665554444 4443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.97  E-value=2.4e-29  Score=262.04  Aligned_cols=406  Identities=11%  Similarity=0.023  Sum_probs=269.1

Q ss_pred             ccchhhHHHHHHHHHHHHH-cCCccccccccHHHHh----------------------hcCCChhhHHHHHHHhhhccc-
Q 009130            7 LSTNSKWIATVASIWIQCS-VGTTYTFSIYSSTLKS----------------------TQNYDQSTLERVAVFKDMGGS-   62 (543)
Q Consensus         7 ~~~~~~w~~~~~~~~~~~~-~g~~~~~~~~~~~l~~----------------------~~~~s~~~~~~~~~~~~~~~~-   62 (543)
                      ...+.||.+.......... .......++..+.+.+                      |++++..+.+.+.+.+.+++. 
T Consensus        12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~   91 (465)
T TIGR00894        12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII   91 (465)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence            3566778766655443332 2223344555555554                      899999999988777787776 


Q ss_pred             ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhh
Q 009130           63 AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNT  142 (543)
Q Consensus        63 ~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~  142 (543)
                      .+++.|++.||+|               +|+++..+.++++++.++...   +...+   ++.+++.|+++|++.+...+
T Consensus        92 ~~~~~g~l~dr~g---------------~r~~l~~~~~~~~~~~~~~~~---~~~~~---~~~l~~~r~~~G~~~~~~~~  150 (465)
T TIGR00894        92 IQIPVGYLAGKYV---------------FKWSIGIGMFLSSVISIVIPW---AAGGG---IALVVFCRVIQGLAQGSVSP  150 (465)
T ss_pred             HHcchHHHHHHhC---------------cchhhHHHHHHHHHHHHHHHH---HHHcC---chHHHHHHHHHHHhcccchh
Confidence            7889999999999               999999999998888877321   11233   67789999999999999999


Q ss_pred             hHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHhheeccCCCCcccch
Q 009130          143 GNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG-NPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKK  220 (543)
Q Consensus       143 ~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (543)
                      ....++++|+| ++|++++|+...+..+|.++++++.+.+.+. .+|++.+.+..+..++..+......           
T Consensus       151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~-----------  219 (465)
T TIGR00894       151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP-----------  219 (465)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh-----------
Confidence            99999999998 6899999999999999999999999988776 3787776665544333221111110           


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCC
Q 009130          221 HLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELAD  300 (543)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (543)
                                                                          +++|++++   +.+++|         .+
T Consensus       220 ----------------------------------------------------~~~p~~~~---~~~~~~---------~~  235 (465)
T TIGR00894       220 ----------------------------------------------------ADDPSIHP---CISKFE---------KK  235 (465)
T ss_pred             ----------------------------------------------------cCCcccCC---CCCHHH---------HH
Confidence                                                                11111100   000000         00


Q ss_pred             CccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhh
Q 009130          301 DESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFF  379 (543)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~i  379 (543)
                      ..++  ..+++.+ +.+....+++.++++.+|...+..++.....+.+..++|.++++ +|++..+.+...++..++..+
T Consensus       236 ~i~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i  312 (465)
T TIGR00894       236 YINS--SLQGQKG-STRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWL  312 (465)
T ss_pred             HHHh--hcccccC-CCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHH
Confidence            0000  0000000 00112346788999999999998888877777888899999865 699999999999999999999


Q ss_pred             hccccccchhhhhhhcCCCchHH--HHHHHHH--HHHHHHHHhh-c-CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCC
Q 009130          380 GRFGAGYGSDVFLHKLGWARPIF--MVITLVA--MSIGHIAIAS-G-FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGV  453 (543)
Q Consensus       380 g~~~~G~lsD~~~~~~~~~r~~~--~~~~~~~--~~i~~~~~~~-~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~  453 (543)
                      +.++.|+++||+++|+...|+..  +..+...  ..+..+.... . +.....+...+.+.+.+...+.......|..| 
T Consensus       313 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-  391 (465)
T TIGR00894       313 CSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-  391 (465)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-
Confidence            99999999999876643222211  1111111  1111111221 1 22222333334344444444444444556655 


Q ss_pred             cchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          454 RHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       454 ~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      +..|.+.|+.+..+.+++. ++|.+.|.+.|..+         ..+|...|++.++..+++.++...+.
T Consensus       392 ~~~g~~~g~~~~~~~l~~~-i~p~l~g~~~~~~~---------~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       392 RFLGFIKGITGLPGFIGGL-IASTLAGNILSQDS---------KNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHhhheeeCCCC---------chHHHHHHHHHHHHHHHHHHHeeeee
Confidence            5899999999999999995 78888998877542         12488999999888888877655443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.97  E-value=4.2e-28  Score=253.98  Aligned_cols=426  Identities=13%  Similarity=0.029  Sum_probs=258.3

Q ss_pred             hhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhc--------CCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccc
Q 009130           10 NSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQ--------NYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHH   79 (543)
Q Consensus        10 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~--------~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~   79 (543)
                      ++.+.+++.+.+..+..+. ...++...|.++++|        ++++.+.+++.+.+.++.. .+++.|+++||+|    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~G----   83 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG----   83 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            3344444444444444553 344566667788877        8889999988787787776 7889999999999    


Q ss_pred             cccccccccCCchHHHHHHHHHHHHHHHHHHHHHh----ccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-C
Q 009130           80 HHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVV----GLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-H  154 (543)
Q Consensus        80 ~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~  154 (543)
                                 ||+++.++.+++.++.++.++...    ...++...++.++++|+++|++.|..++....+++|++| +
T Consensus        84 -----------rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~  152 (479)
T PRK10077         84 -----------RRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH  152 (479)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh
Confidence                       999999999999988887322100    001111124667889999999999999999999999998 6


Q ss_pred             CCcchhHHHHHhhhhhHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHH
Q 009130          155 YSGTIVGILKGFVGLSGAVLTQVYKTVC--------NGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFS  226 (543)
Q Consensus       155 ~rg~~~gi~~~~~~lg~~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (543)
                      +||+++++...+..+|.++++.+...+.        +..+||+.+....++.++..+...++++.|+...++++......
T Consensus       153 ~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~  232 (479)
T PRK10077        153 IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEG  232 (479)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHH
Confidence            7999999999999999998876655443        23478888877766666554444444332210000000000000


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchh
Q 009130          227 AVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVT  306 (543)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (543)
                      ..                                             ++..  +                . .+.++..+
T Consensus       233 ~~---------------------------------------------~~~~--~----------------~-~~~~~~~~  248 (479)
T PRK10077        233 IL---------------------------------------------RKIM--G----------------N-TLATQALQ  248 (479)
T ss_pred             HH---------------------------------------------HHHc--C----------------C-hhHHHHHH
Confidence            00                                             0000  0                0 00000000


Q ss_pred             cccccccchhhcchhHHHhhcchhHHH---HHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccc
Q 009130          307 AAFDDKILKDEEDMNLLQAMCTGNFWF---LCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFG  383 (543)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~f~~---~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~  383 (543)
                        +..+. .+......+..+.......   .....+...........+.|.+.++.|++...........++.+.++.++
T Consensus       249 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~  325 (479)
T PRK10077        249 --EIKHS-LDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVL  325 (479)
T ss_pred             --HHHHH-HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Confidence              00000 0000000011111000000   01111111111223345567888888998877887778889999999999


Q ss_pred             cccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-h--cCcc--hHHHHHHHHHhhhhhhh-hhHHHHHHhhcCCcchh
Q 009130          384 AGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-S--GFPG--NLFVGTMIVGVCYGSQW-SLMPTITSEIFGVRHMG  457 (543)
Q Consensus       384 ~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~--~~~~--~~~~~~~l~G~~~g~~~-~~~~~~~~~~~~~~~~g  457 (543)
                      .|+++||++||      .++..+.++++++++++. .  .+..  ......++.+.+.+..+ +..+.++.|.+|+++|+
T Consensus       326 ~g~l~dr~g~r------~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  399 (479)
T PRK10077        326 AIMTVDKFGRK------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG  399 (479)
T ss_pred             HHHHHHHhcCh------HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH
Confidence            99999999644      677777777777666543 1  1221  22223344444444322 56678999999999999


Q ss_pred             hHHHHHHhhhhhhhhhhhhhhhhhhh------hhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhHH
Q 009130          458 TIFNTISIACPVGSYICSVRIIGRIY------DRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQ  531 (543)
Q Consensus       458 ~~~g~~~~~~~ig~~i~~~~l~g~l~------~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  531 (543)
                      ++.|+.+....++.. +++.+.+.+.      |..+            +...|++.++.+++++++.+++.+|+|++..+
T Consensus       400 ~~~g~~~~~~~~g~~-~~~~~~p~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  466 (479)
T PRK10077        400 KALAIAVAAQWIANY-FVSWTFPMMDKNSWLVAHFH------------NGFSYWIYGCMGVLAALFMWKFVPETKGKTLE  466 (479)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHhHHHHhccchhhhcc------------CccHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence            999999888888874 5554554433      3443            66788888877777777776667777766555


Q ss_pred             HHHHh
Q 009130          532 VVIRR  536 (543)
Q Consensus       532 ~~~~~  536 (543)
                      +.++.
T Consensus       467 ~~~~~  471 (479)
T PRK10077        467 EMEAL  471 (479)
T ss_pred             HHHHH
Confidence            44443

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=6.9e-28  Score=251.64  Aligned_cols=385  Identities=9%  Similarity=-0.011  Sum_probs=260.6

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      .+.++...|.+.+|+|.++.+.+++.+.+.++.. ..++.|+++||+|               ||+++..+.++++++.+
T Consensus        26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g---------------~r~~~~~~~~~~~~~~~   90 (471)
T PRK10504         26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVG---------------VRNIFFTAIVLFTLGSL   90 (471)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------hHHHHHHHHHHHHHHHH
Confidence            3455667899999999999999977777777754 6788999999999               99999999999998888


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCc
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP  186 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~  186 (543)
                      +     ++++++   ++.+++.|+++|+|.+...+.....+.+++| ++|+++.|+.....++|..+++++++.+.+..+
T Consensus        91 ~-----~~~~~~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g  162 (471)
T PRK10504         91 F-----CALSGT---LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS  162 (471)
T ss_pred             H-----HHHhCC---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence            7     566665   7889999999999999999998899999998 579999999999999999999999999988888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          187 STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      |++.+....+...+..+......  ++.+.+.++ .+.........+.........++..  ..|...............
T Consensus       163 w~~~f~~~~~~~~l~~~~~~~~~--~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  237 (471)
T PRK10504        163 WHWIFLINIPVGIIGAIATLMLM--PNYTMQTRR-FDLSGFLLLAVGMATLTLALDGSKG--LGLSPLAIAGLVAVGVVA  237 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC--CCccccCCC-CChHHHHHHHHHHHHHHHHHhcCCc--CCcchHHHHHHHHHHHHH
Confidence            99888876655444443333222  111111111 1111111111111111111111111  111111111111111111


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                      ......+++   +.                               ++     .....+++||+.++...+..++......
T Consensus       238 ~~~~~~~~~---~~-------------------------------~~-----~~~~~~l~~~~~~~~~l~~~~~~~~~~~  278 (471)
T PRK10504        238 LLLYLLHAR---NN-------------------------------NR-----ALFSLKLFRTRTFSLGLAGSFAGRIGSG  278 (471)
T ss_pred             HHHHHHHHh---cC-------------------------------CC-----CccCHHHhcccchHHHHHHHHHHHHHHH
Confidence            111111110   00                               00     0111347889998887777766655544


Q ss_pred             hhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-c-Ccc
Q 009130          347 ATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-G-FPG  423 (543)
Q Consensus       347 ~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~-~~~  423 (543)
                      ......|.+.+. .|.++.+.++......++..++.++.|++.||+++|      +++..+.++..+...++.. . +..
T Consensus       279 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~  352 (471)
T PRK10504        279 MLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR------RVLVATTLGLALVSLLFMLVALLGW  352 (471)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHHHHHHHHHHHHhcccccc
Confidence            455667888775 799999999999999999999999999999999654      5666666655555444432 1 121


Q ss_pred             --hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          424 --NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       424 --~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                        ...+..++.|++.+...+....++.+..|+++++.++|+.++...+|.. +++.+.|.+.+..+
T Consensus       353 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~~i~g~ll~~~g  417 (471)
T PRK10504        353 YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMS-IGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence              2233455667888877888888899999999999999999999999884 88888898888765

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=7.9e-28  Score=247.95  Aligned_cols=379  Identities=11%  Similarity=-0.046  Sum_probs=241.0

Q ss_pred             cchhhHHHHHHHHHHHHHcC-CccccccccHHHHhhcC---CChhhHHHHHHHhhhcc----cccchhhHhhhhcccccc
Q 009130            8 STNSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQN---YDQSTLERVAVFKDMGG----SAGILSGLLFSYVTLNHH   79 (543)
Q Consensus         8 ~~~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~---~s~~~~~~~~~~~~~~~----~~~~~~G~l~d~~g~~~~   79 (543)
                      .++++|+.++.+.+...... ..+.++...|.+.+|++   .+..+.+.....+..++    ..+++.|++.||+|    
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~G----   91 (432)
T PRK10406         16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHG----   91 (432)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence            44566665555544333322 35568888899999985   55555443333222222    35778999999999    


Q ss_pred             cccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCC-----hHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-
Q 009130           80 HHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPV-----PVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-  153 (543)
Q Consensus        80 ~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-  153 (543)
                                 ||+++..+.+++++++++     ++++++..     +...+++.|+++|+|.|..++...++++||+| 
T Consensus        92 -----------rr~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~  155 (432)
T PRK10406         92 -----------RKKSMLISVCMMCFGSLV-----IACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE  155 (432)
T ss_pred             -----------cHHHHHHHHHHHHHHHHH-----HhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC
Confidence                       999999999999999999     77777620     02357889999999999999999999999998 


Q ss_pred             CCCcchhHHHHHhhhhhHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhH
Q 009130          154 HYSGTIVGILKGFVGLSGAVLTQVYKTVC--------NGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAF  225 (543)
Q Consensus       154 ~~rg~~~gi~~~~~~lg~~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (543)
                      ++||++.++...+...|.++++.+...+.        ...+||+.+.+..++.++.+.   + +.               
T Consensus       156 ~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~---~-~~---------------  216 (432)
T PRK10406        156 GRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW---L-RR---------------  216 (432)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH---H-Hh---------------
Confidence            78999999988888777777765543321        135677777665554433210   0 00               


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccch
Q 009130          226 SAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKV  305 (543)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (543)
                                                                      ..+|.++                    .+++ 
T Consensus       217 ------------------------------------------------~~~e~~~--------------------~~~~-  227 (432)
T PRK10406        217 ------------------------------------------------QLDETSQ--------------------QETR-  227 (432)
T ss_pred             ------------------------------------------------cCCCCch--------------------HHHh-
Confidence                                                            0000000                    0000 


Q ss_pred             hcccccccchhhcchhHHHhhcchhHHHHHHHHHhh-hchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccc
Q 009130          306 TAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCG-MGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFG  383 (543)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~  383 (543)
                          +.+     +..+.++.++++++|...+..++. ....+.+..++|.++++ .|++..+.+...++..+...++.++
T Consensus       228 ----~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~  298 (432)
T PRK10406        228 ----ALK-----EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPL  298 (432)
T ss_pred             ----hhc-----ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                000     012346677888888776655443 45566677888998865 6999888888888888888899999


Q ss_pred             cccchhhhhhhcCCCchHHHHHHHHHHHHHHH-HH--hh-c-CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhh
Q 009130          384 AGYGSDVFLHKLGWARPIFMVITLVAMSIGHI-AI--AS-G-FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGT  458 (543)
Q Consensus       384 ~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~-~~--~~-~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~  458 (543)
                      .|+++||++||      +.+.+..++..+... .+  .. . ++........+..++.+...+..+.+.+|.+|+|+|++
T Consensus       299 ~G~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t  372 (432)
T PRK10406        299 IGALSDKIGRR------TSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRAL  372 (432)
T ss_pred             HHHHHHHcCch------HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccch
Confidence            99999999754      333333332222211 11  11 1 22211112222223334444556678899999999999


Q ss_pred             HHHHHHhhhhh-hhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          459 IFNTISIACPV-GSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       459 ~~g~~~~~~~i-g~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      +.|+.+..+.+ .+ ...|.+.+.+ +..|.           |...+++.++..+++.+..+++.
T Consensus       373 ~~g~~~~~g~~~~g-~~~p~~~~~l-~~~g~-----------~~~~~~~~~~~~~i~~~~~~~l~  424 (432)
T PRK10406        373 GVGLSYAVANALFG-GSAEYVALSL-KSIGM-----------ETAFFWYVTLMAVVAFLVSLMLH  424 (432)
T ss_pred             hhhHHHHHHHHHHH-hHHHHHHHHH-HHhCC-----------CcHHHHHHHHHHHHHHHHHHHhh
Confidence            99998765544 33 2467667744 55552           66667766666666666655543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=4.3e-28  Score=244.72  Aligned_cols=373  Identities=15%  Similarity=0.103  Sum_probs=240.9

Q ss_pred             CccccccccHHHHh-hcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHH
Q 009130           28 TTYTFSIYSSTLKS-TQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTG  105 (543)
Q Consensus        28 ~~~~~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g  105 (543)
                      .-+.++++.+.+.+ |+|+|++|.+++.+...+.+. ..++.|++.||+|               +|+++.++.++..+.
T Consensus        49 ~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G---------------~R~v~~~~~ll~~i~  113 (462)
T PRK15034         49 VWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFG---------------GRRWTVFSTAILIIP  113 (462)
T ss_pred             HHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------ChHHHHHHHHHHHHH
Confidence            45678888888866 899999999977666666654 6799999999999               999999999999999


Q ss_pred             HHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC
Q 009130          106 YFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG  184 (543)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~  184 (543)
                      +++.++......++   ++.+++.|++.|++ +..+++....+++||| ++||+++|+.....++|..+.+.+...+.  
T Consensus       114 ~~~~~~a~~~~~~s---~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i--  187 (462)
T PRK15034        114 CVWLGIAVQNPNTP---FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI--  187 (462)
T ss_pred             HHHHHHHHcccCCC---HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence            98833211111244   89999999999998 7788999999999999 57999999997777777777665543321  


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhheeccCCCC-----cccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Q 009130          185 NPSTYILVLALLPTLVSLLFMSHVRIYGTNS-----VDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFII  259 (543)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (543)
                                      ....   ....+++.     ++............                             .
T Consensus       188 ----------------~~~l---~~~~G~~~~~~~~g~~~~~~~~~~~~~-----------------------------~  219 (462)
T PRK15034        188 ----------------FVPV---FAFLGVNGVPQADGSVMSLANAAWIWV-----------------------------P  219 (462)
T ss_pred             ----------------HHHH---HHHhccccccccccchHHHHHHHHHHH-----------------------------H
Confidence                            1000   00011100     00000111111110                             0


Q ss_pred             HHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHH
Q 009130          260 LLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATL  339 (543)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~  339 (543)
                      .+++..+..++. .+++++                                    .+......++.+|+|..|.+++.++
T Consensus       220 ~~iv~~i~~~~~-~~~~~~------------------------------------~~~~~~~~~~vlk~~~~Wllslly~  262 (462)
T PRK15034        220 LLAIATIAAWSG-MNDIAS------------------------------------SRASIADQLPVLQRLHLWLLSLLYL  262 (462)
T ss_pred             HHHHHHHHHHHh-CCCccc------------------------------------cccCHHHHHHHhCCCchhHHHHHHH
Confidence            001111111111 111000                                    0001133467899999999999999


Q ss_pred             hhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHH-H-
Q 009130          340 CGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIA-I-  417 (543)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~-~-  417 (543)
                      +..+.+.++..++|++.++ .++.........+..+...+.++++|+++||+|++      +++.++.+.+.++... + 
T Consensus       263 ~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~------~vl~~~~i~~~i~~~~~~l  335 (462)
T PRK15034        263 ATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGV------RVTLINFIFMAIFSALLFL  335 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch------HHHHHHHHHHHHHHHHHHH
Confidence            9888888888899998866 44443333334456788889999999999999654      5555565554444322 1 


Q ss_pred             hhcC-----cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCC---------------------cchhhHHHHHHhhhhhhh
Q 009130          418 ASGF-----PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGV---------------------RHMGTIFNTISIACPVGS  471 (543)
Q Consensus       418 ~~~~-----~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~---------------------~~~g~~~g~~~~~~~ig~  471 (543)
                      ..+.     .....+..+...++.|.......-+++++||+                     ++.|.+.|+....+.+|+
T Consensus       336 ~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Gg  415 (462)
T PRK15034        336 TLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGG  415 (462)
T ss_pred             HhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHccc
Confidence            1221     11122222222233333333344445555553                     267889999999999999


Q ss_pred             hhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009130          472 YICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRT  525 (543)
Q Consensus       472 ~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  525 (543)
                      + +-|.+.|...+.+|+           |...|+++.++.+++.++.+..+.|+
T Consensus       416 f-~~p~~~g~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~w~~y~r~  457 (462)
T PRK15034        416 F-FIPQAFGMSLNMTGS-----------PVGAMKVFLIFYIVCVLLTWLVYGRR  457 (462)
T ss_pred             c-hhhHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            6 667789999998884           99999999999999999988776554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=1.2e-28  Score=258.71  Aligned_cols=437  Identities=11%  Similarity=0.007  Sum_probs=266.4

Q ss_pred             cccccccchhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhc-----CCChhhHHHHHHHhhhccc-ccchhhHhhhhc
Q 009130            2 RMEERLSTNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQ-----NYDQSTLERVAVFKDMGGS-AGILSGLLFSYV   74 (543)
Q Consensus         2 ~~~~~~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~-----~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~   74 (543)
                      ++|+.+..+..++++..+.+..+..|. ....+...|.+.+++     +.++.+.+++.+...++.. ..++.|++.||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~   83 (502)
T TIGR00887         4 EADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL   83 (502)
T ss_pred             hhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            356666677777766666555555543 344566667776642     3455666777787788776 678999999999


Q ss_pred             ccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCC---hHHHHHHHHHHHhcCcchhhhhHHHHHhhh
Q 009130           75 TLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPV---PVPLMCLFIFTAAHAQNFFNTGNIVTGVMN  151 (543)
Q Consensus        75 g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~  151 (543)
                      |               ||+++.++.+++.++.++     ++++.+..   +++.++++|+++|++.|..++....+++|+
T Consensus        84 G---------------rr~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~  143 (502)
T TIGR00887        84 G---------------RKRVYGMELIIMIIATVA-----SGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEF  143 (502)
T ss_pred             c---------------cHHHHHHHHHHHHHHHHH-----HHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            9               999999999999999888     44443210   157789999999999999999999999999


Q ss_pred             cC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC-----------------------CCchhHHHHHHHHHHHHHHHHHhh
Q 009130          152 FG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN-----------------------GNPSTYILVLALLPTLVSLLFMSH  207 (543)
Q Consensus       152 fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~  207 (543)
                      +| ++||+++++......+|..+++.+...+..                       +..||+.+.+..+|.++.++...+
T Consensus       144 ~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~  223 (502)
T TIGR00887       144 ATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT  223 (502)
T ss_pred             cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            99 689999999999999999888887765421                       236999998888888877766666


Q ss_pred             eeccCCCCcccchh-hhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCC
Q 009130          208 VRIYGTNSVDDKKH-LNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLS  286 (543)
Q Consensus       208 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (543)
                      +++.|+.-..+++. ..+...+.                                            +..++     +  
T Consensus       224 lpESpr~l~~~~~~~~~a~~~~~--------------------------------------------~~~~~-----~--  252 (502)
T TIGR00887       224 IPETPRYTADVAKDVEQAASDMS--------------------------------------------AVLQV-----K--  252 (502)
T ss_pred             CCCCHHHHHHhCcchHHHHHHHH--------------------------------------------HHhcc-----c--
Confidence            66554310000000 00000000                                            00000     0  


Q ss_pred             CCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcc---hh----HHHHHHHHHhhhchhhhhhhchHHHHHhh
Q 009130          287 TPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCT---GN----FWFLCIATLCGMGSGIATMNNIAQVGESL  359 (543)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----f~~~~l~~~~~~~~~~~~~~~~~~~~~~~  359 (543)
                        .+++   .++.++   .+   ++++   ..+.++++++++   ++    .+......+......++...+.|.++++.
T Consensus       253 --~~~~---~~~~~~---~~---~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~  318 (502)
T TIGR00887       253 --IEAE---PDEVEK---AS---TAVE---VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAI  318 (502)
T ss_pred             --cccC---cccccc---hh---cccc---chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH
Confidence              0000   000000   00   0000   001123444432   11    12222223333344556667788988888


Q ss_pred             CCCchhhHH------------HHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh--hc--Ccc
Q 009130          360 HYSTTEINS------------LISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA--SG--FPG  423 (543)
Q Consensus       360 g~s~~~a~~------------~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~--~~--~~~  423 (543)
                      |+++.+++.            ...+..++.+++.+++++++||+|||      +++..+.+++.+++.++.  ..  +..
T Consensus       319 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR------~~l~~~~~~~~~~~~~l~~~~~~~~~~  392 (502)
T TIGR00887       319 GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK------PIQLMGFFILTVLFFVLGFAYNHLSTH  392 (502)
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch------hHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            887553221            23344556667889999999999654      566666666555544333  11  111


Q ss_pred             h-HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHH
Q 009130          424 N-LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFML  502 (543)
Q Consensus       424 ~-~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~  502 (543)
                      . +....+...++..+..+....+.+|.+|++.|+++.|+.+..+.++++ ++|.+.+.+.|..+...+.  +...++..
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~  469 (502)
T TIGR00887       393 GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAI-IGQFGFLYLAQHGDPTKGY--PTGIWMGH  469 (502)
T ss_pred             HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHH-HHHHHhhhhhccccccccc--cccccchH
Confidence            1 111111111222223445667789999999999999999999999984 8888999998854210000  00012566


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhhhHHHH
Q 009130          503 SFMIMAFVAFFGSLVAFLLFLRTRRFYNQVV  533 (543)
Q Consensus       503 ~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  533 (543)
                      .|++.++.++++.+.. ++.+|+|++..++.
T Consensus       470 ~~~i~~~~~~~~~i~~-~~lpEt~~~~leei  499 (502)
T TIGR00887       470 VLEIFALFMFLGILFT-LLIPETKGKSLEEL  499 (502)
T ss_pred             HHHHHHHHHHHHHHHh-eEeccCCCCCHHhh
Confidence            7888888777776654 44567777654443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.96  E-value=4.8e-28  Score=247.67  Aligned_cols=378  Identities=13%  Similarity=0.082  Sum_probs=251.6

Q ss_pred             cchhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccc
Q 009130            8 STNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRT   85 (543)
Q Consensus         8 ~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~   85 (543)
                      .++++|..+..+++.....+. .+..+...|.+++++|+++.+.+++.+...++.. .+++.|.+.||+|          
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g----------   75 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYG----------   75 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence            456777776666665555443 4567888899999999999999977777676665 7889999999999          


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHH
Q 009130           86 RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILK  164 (543)
Q Consensus        86 ~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~  164 (543)
                           ||+++..+.++.+++.++     ++++++   ++.+++.|++.|++.+..++....++.|++| ++|++++++..
T Consensus        76 -----~r~~~~~~~~~~~~~~~~-----~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  142 (405)
T TIGR00891        76 -----RRLPMVTSIVLFSAGTLA-----CGFAPG---YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLI  142 (405)
T ss_pred             -----cHHHHHHHHHHHHHHHHH-----HHHhcc---HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHH
Confidence                 999999999999999888     666666   8999999999999999999999999999998 68999999999


Q ss_pred             HhhhhhHHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHH
Q 009130          165 GFVGLSGAVLTQVYKTVCNGN--PSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVM  242 (543)
Q Consensus       165 ~~~~lg~~i~~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (543)
                      .+.++|.++++.+...+.+..  .|++.+.+..++.++.++.....++.++                             
T Consensus       143 ~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~-----------------------------  193 (405)
T TIGR00891       143 SGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAED-----------------------------  193 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChh-----------------------------
Confidence            999999999999988876543  4888777665554443322211111100                             


Q ss_pred             hhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhH
Q 009130          243 ENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNL  322 (543)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (543)
                                                       .++.+   +.++...+. .+  +..++++.    .+.. .++.....
T Consensus       194 ---------------------------------~~~~~---~~~~~~~~~-~~--~~~~~~~~----~~~~-~~~~~~~~  229 (405)
T TIGR00891       194 ---------------------------------WKEKH---AGKALVRTM-VD--ILYGGEHR----IANI-VMTLAAAM  229 (405)
T ss_pred             ---------------------------------HHHHh---hhhhhhhhH-HH--HHhccchh----hhhh-hhhhhHHh
Confidence                                             00000   000000000 00  00000000    0000 00000001


Q ss_pred             HHhh-cc-hhHHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCc
Q 009130          323 LQAM-CT-GNFWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWAR  399 (543)
Q Consensus       323 ~~~~-~~-~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r  399 (543)
                      ++.. ++ +.+........+..........+.|.+.+ +.|+++.+.+.+.+...++..+++++.|+++||+++|     
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~-----  304 (405)
T TIGR00891       230 VQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRR-----  304 (405)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-----
Confidence            1111 11 11222222222222233344556777775 5799999999999999999999999999999999654     


Q ss_pred             hHHHHHHHHHHHHH-HHHHhhc-CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhh
Q 009130          400 PIFMVITLVAMSIG-HIAIASG-FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVR  477 (543)
Q Consensus       400 ~~~~~~~~~~~~i~-~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~  477 (543)
                       +.+..+.+...+. ..++... +...+.+..++.+++.++..+..+.++.|.+|+++++++.|+.+....++. .++|+
T Consensus       305 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~g~~  382 (405)
T TIGR00891       305 -KAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGG-ALAPI  382 (405)
T ss_pred             -hhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHH-HHHHH
Confidence             3444444433222 2222222 222334444566666666677788899999999999999999998888988 48999


Q ss_pred             hhhhhhhhccC
Q 009130          478 IIGRIYDRVAS  488 (543)
Q Consensus       478 l~g~l~~~~g~  488 (543)
                      +.|.+.|..|+
T Consensus       383 ~~g~l~~~~g~  393 (405)
T TIGR00891       383 IGALLAQRLDE  393 (405)
T ss_pred             HHHHHHHhccc
Confidence            99999999874

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=2.6e-27  Score=240.81  Aligned_cols=365  Identities=10%  Similarity=0.037  Sum_probs=255.8

Q ss_pred             cchhhHHHHHHHHHHH-HHcCCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccc
Q 009130            8 STNSKWIATVASIWIQ-CSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRT   85 (543)
Q Consensus         8 ~~~~~w~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~   85 (543)
                      ..|+-|..+....... +.....|....+.|.+.+|+|+++++.++..+...++.. .+++.|.+.||+|          
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g----------   83 (394)
T PRK10213         14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATD----------   83 (394)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------
Confidence            3445666544433332 222234444456789999999999999966555555554 7889999999999          


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHH
Q 009130           86 RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILK  164 (543)
Q Consensus        86 ~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~  164 (543)
                           ||+++..+.++++++.++     ++++++   ++.+++.|+++|++.+...+....++.|++| ++|++++++..
T Consensus        84 -----rr~~~~~~~~~~~~~~~~-----~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~  150 (394)
T PRK10213         84 -----RRYVVILFAVLLTLSCLL-----VSFANS---FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIF  150 (394)
T ss_pred             -----cHHHHHHHHHHHHHHHHH-----HHHHCh---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHH
Confidence                 999999999999998888     666665   8999999999999999999999999999998 68999999999


Q ss_pred             HhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhh
Q 009130          165 GFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMEN  244 (543)
Q Consensus       165 ~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (543)
                      .+.++|.++++++++.+.+..+|++.+....+..++..+.  ..                                    
T Consensus       151 ~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~--~~------------------------------------  192 (394)
T PRK10213        151 GAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW--II------------------------------------  192 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH--HH------------------------------------
Confidence            9999999999999999987778887776544322211100  00                                    


Q ss_pred             cccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHH
Q 009130          245 LLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQ  324 (543)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (543)
                                                  +..|+.++                +            +++     .....++
T Consensus       193 ----------------------------~~~p~~~~----------------~------------~~~-----~~~~~~~  211 (394)
T PRK10213        193 ----------------------------KSLPSLPG----------------E------------PSH-----QKQNTFR  211 (394)
T ss_pred             ----------------------------HHCCCCCc----------------c------------ccc-----chhHHHH
Confidence                                        00010000                0            000     0012356


Q ss_pred             hhcchhHHHHHHHHHhhhchhhhhhhch-HHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          325 AMCTGNFWFLCIATLCGMGSGIATMNNI-AQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       325 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      .+++|.+|...+..++.....+....+. |.+.++.|+++++.+......+++..+++++.+++.||.+      ++..+
T Consensus       212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~------~~~l~  285 (394)
T PRK10213        212 LLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV------KLALA  285 (394)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhHHH
Confidence            7889998887666555444444545555 6666778999999999999999999999999999988852      22233


Q ss_pred             HHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          404 VITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       404 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      ....+.....+++.. ..+.....+..++.|++.+...+..+..+.+..| ++.+.+.+.......+|. .+||.+.|.+
T Consensus       286 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~-~~G~~l~G~l  363 (394)
T PRK10213        286 GAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLAN-TCGAAIGGYA  363 (394)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            323332333333332 3344455667778898888888888877888776 566777777766677777 4889999999


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHH
Q 009130          483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFG  514 (543)
Q Consensus       483 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~  514 (543)
                      .|..|            ++..++..++..++.
T Consensus       364 ~~~~g------------~~~~~~~~~~~~~~~  383 (394)
T PRK10213        364 LDNIG------------LTSPLMLSGTLMLLT  383 (394)
T ss_pred             HhccC------------hhhHHHHHHHHHHHH
Confidence            99876            777777665544443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=9.3e-29  Score=258.48  Aligned_cols=403  Identities=13%  Similarity=0.016  Sum_probs=258.3

Q ss_pred             cccccccHHHHhhcCCC--------hhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYD--------QSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAI  100 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s--------~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~  100 (543)
                      ..++...|.+.++++.+        ..+.+++.+.+.++.. .+++.|++.||+|               ||+++.++.+
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g---------------rr~~~~~~~~  109 (481)
T TIGR00879        45 GVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFG---------------RKKSLLIIAL  109 (481)
T ss_pred             chhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhh---------------hHHHHHHHHH
Confidence            34555667777777766        8889977777777765 7889999999999               9999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHH-
Q 009130          101 LCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVY-  178 (543)
Q Consensus       101 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~-  178 (543)
                      ++.++.++     +....+..+++.+++.|+++|+|.+..++....+++|++| ++|++++++...+..+|.++++.+. 
T Consensus       110 ~~~~~~~~-----~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~  184 (481)
T TIGR00879       110 LFVIGAIL-----MGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS  184 (481)
T ss_pred             HHHHHHHH-----HHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999888     4333221125688999999999999999999999999998 6899999999999999999999988 


Q ss_pred             --HHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Q 009130          179 --KTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIIT  256 (543)
Q Consensus       179 --~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (543)
                        ....+..+|++.+....++.++.++...++++.|.....+++........                            
T Consensus       185 ~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------------------------  236 (481)
T TIGR00879       185 GKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSL----------------------------  236 (481)
T ss_pred             HhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHH----------------------------
Confidence              44445668998888876666665555445443321000000000000000                            


Q ss_pred             HHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhc---chhHHH
Q 009130          257 FIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMC---TGNFWF  333 (543)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~  333 (543)
                                       .+..+..        +.+....++ .+..+...  +.+.+..+.......+..+   .+.++.
T Consensus       237 -----------------~~~~~~~--------~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (481)
T TIGR00879       237 -----------------ARLRGTS--------GEDKELLDE-LELIDIKR--SIEKRSVQPSWGSLFSSTRRIRRRLFLG  288 (481)
T ss_pred             -----------------HHHhCCC--------CCcHHHHHH-HHHHHHHH--HHHHhhccccHHHHHhcCchhHHHHHHH
Confidence                             0000000        000000000 00000000  0000000000111122222   233444


Q ss_pred             HHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130          334 LCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG  413 (543)
Q Consensus       334 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~  413 (543)
                      ..+..+...........+.|.+.++.|++..+++....+..++.++++++.|+++||+++|      +.+..+.++.+++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~------~~~~~~~~~~~~~  362 (481)
T TIGR00879       289 VVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR------PLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHH
Confidence            4444443333333456667888888899998888899999999999999999999999654      4555566655555


Q ss_pred             HHHHh---h--cC------cchHHHHHHHHHhhhhhh-hhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhh
Q 009130          414 HIAIA---S--GF------PGNLFVGTMIVGVCYGSQ-WSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGR  481 (543)
Q Consensus       414 ~~~~~---~--~~------~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~  481 (543)
                      ++++.   .  .+      ........++.+.+.+.. .+....++.|.+|+++++++.|+.+....+++. ++|.+.+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~-i~~~~~~~  441 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANF-IVGFLFPT  441 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            54433   1  11      112222233333333322 345556779999999999999999999999985 78889999


Q ss_pred             hhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 009130          482 IYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRR  527 (543)
Q Consensus       482 l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~  527 (543)
                      +.|..+            |+..|++.++++++++++.+++.+++|+
T Consensus       442 ~~~~~~------------~~~~f~~~~~~~~~~~i~~~~~~~~~~~  475 (481)
T TIGR00879       442 MLESIG------------VGGVFIFFGGLNVLGLIFVYFFLPETKG  475 (481)
T ss_pred             HHHhcC------------ccceehhHHHHHHHHHHHHheecccCCC
Confidence            988876            8888999988888888777666655544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=7.2e-28  Score=243.85  Aligned_cols=356  Identities=14%  Similarity=0.133  Sum_probs=246.8

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      ...++...|.+.+++|++..+.+++.+...++.. ..++.|++.||+|               ||+++..+.++.+++.+
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~~~~   75 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSN---------------PRVFLPIGLILCAIVNL   75 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhC---------------CeehhHHHHHHHHHHHH
Confidence            4567778899999999999999988777777765 6889999999999               99999999999999998


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHH-HHHHhcCCC
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQ-VYKTVCNGN  185 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~-l~~~l~~~~  185 (543)
                      +     .+++++   ++.+++.|++.|++.+...+....++.+++| ++|++++++...+..+|..++++ +...+.+..
T Consensus        76 ~-----~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  147 (379)
T TIGR00881        76 F-----FGFSTS---LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY  147 (379)
T ss_pred             H-----HHHhhh---HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcC
Confidence            8     556665   7899999999999999999999999999998 57999999999999999999995 544554555


Q ss_pred             chhHHHHHHHHHHHH-HHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHh
Q 009130          186 PSTYILVLALLPTLV-SLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLL  264 (543)
Q Consensus       186 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (543)
                      +|++.+....+..++ .++...+.+                                                       
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  172 (379)
T TIGR00881       148 SWHWVFIVPGIIAIIVSLICFLLLR-------------------------------------------------------  172 (379)
T ss_pred             CchhHHHHHHHHHHHHHHHHheeeC-------------------------------------------------------
Confidence            676665544332222 121111111                                                       


Q ss_pred             hcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhch
Q 009130          265 ASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGS  344 (543)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~  344 (543)
                               +++++++..++++  +.+    ++++++++      ++++..+..+...++.++++.+|.+.+..++....
T Consensus       173 ---------~~~~~~~~~~~~~--~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (379)
T TIGR00881       173 ---------DSPQSCGLPPAEE--MPN----EEPDGDAE------KKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVV  231 (379)
T ss_pred             ---------CCccccccCcccc--Ccc----cccccccc------cccccccchHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence                     1111110000000  000    00000000      00000111223346778899999888887777666


Q ss_pred             hhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh---c
Q 009130          345 GIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS---G  420 (543)
Q Consensus       345 ~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---~  420 (543)
                      ...+..+.|.+.++ .|+++.+++...++..++..+++++.|++.||..++   .|............++...+..   .
T Consensus       232 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (379)
T TIGR00881       232 RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNG---RRGPLAVFFMALIIVSLLVYWLNPAA  308 (379)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHHHhcCcch
Confidence            66777788888765 699999999999999999999999999999987543   1222222222222222222221   1


Q ss_pred             CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          421 FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       421 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      +.....+..++.|+...+..+....++.|.+|+++++++.|+.+....++.. ++|.+.|.+.|..|
T Consensus       309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~g  374 (379)
T TIGR00881       309 NPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI-LAGLPLGYLADGFG  374 (379)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh-hhhhhHHHHHHhhc
Confidence            2223344455566655555555667889999999999999999999999985 89999999999876

>TIGR00897 2A0118 polyol permease family

Probab=99.96  E-value=1.3e-26  Score=236.74  Aligned_cols=355  Identities=12%  Similarity=0.055  Sum_probs=241.3

Q ss_pred             HHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 009130           37 STLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVG  115 (543)
Q Consensus        37 ~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~  115 (543)
                      +.+.+|+|+++.|.+++.+.+.++.. .+++.|++.||+|               ||+++..+.++++++.++...  .+
T Consensus        37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g---------------~k~~l~~~~~~~~~~~~~~~~--~~   99 (402)
T TIGR00897        37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIG---------------PLKTMMIGLLLWCVGHAAFIV--FG   99 (402)
T ss_pred             HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcC---------------cHHHHHHHHHHHHHHHHHHHH--Hh
Confidence            44557899999999977777777765 7889999999999               999999999999888765211  13


Q ss_pred             cCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhH-HHHHHHHHHhcCCCchhHHHHH
Q 009130          116 LLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSG-AVLTQVYKTVCNGNPSTYILVL  193 (543)
Q Consensus       116 ~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~-~i~~~l~~~l~~~~~~~~~~~~  193 (543)
                      ...+  +++.+++.|+++|+|.+...+.....+.+++| +||++++|+..++.++|. .+++++++.+.+..+|+..+..
T Consensus       100 ~~~~--~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       100 LGHA--NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             ccCc--cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            3322  27788889999999998877777777888887 789999999999999996 5677776666543332211111


Q ss_pred             HHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccc
Q 009130          194 ALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAIT  273 (543)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (543)
                      ......+.                                                            .+...   ...+
T Consensus       178 ~~~~~~~~------------------------------------------------------------~~~~~---~~~~  194 (402)
T TIGR00897       178 ALAFVLTG------------------------------------------------------------GVIAL---FSNK  194 (402)
T ss_pred             HHHHHHHH------------------------------------------------------------HHHHH---hccC
Confidence            10000000                                                            00000   0011


Q ss_pred             cccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchH
Q 009130          274 ADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIA  353 (543)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~  353 (543)
                      +++++++   +              +++        ++   .++.....++.+|+|.+|...+..++.....+.+..+.|
T Consensus       195 ~~~~~~~---~--------------~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  246 (402)
T TIGR00897       195 DIFTPQH---M--------------QTR--------EK---FSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLP  246 (402)
T ss_pred             CCCCccc---c--------------cCC--------cc---hhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1110000   0              000        00   001112345678999999888777776666677788899


Q ss_pred             HHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHH---Hhh---cCcchHHH
Q 009130          354 QVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIA---IAS---GFPGNLFV  427 (543)
Q Consensus       354 ~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~---~~~---~~~~~~~~  427 (543)
                      .+.++.|+++.+.+...+...+++.++++..|+++||+++|+     .....+.+...++.+.   ...   ++....++
T Consensus       247 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~  321 (402)
T TIGR00897       247 MFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN-----TVRWFGGVGCGIFTLALYYIPQHFGHSFAVALI  321 (402)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-----HHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Confidence            999889999999999989999999999999999999997542     2222222222222111   111   12233455


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHH
Q 009130          428 GTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIM  507 (543)
Q Consensus       428 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~  507 (543)
                      ..++.|++.+...+ ....+.|. ++++++++.|+.+....++.. ++|.+.|.+.|..|            +...+++.
T Consensus       322 ~~~~~G~~~~~~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~-~gp~i~g~l~~~~g------------~~~~~~~~  386 (402)
T TIGR00897       322 IAIALGIFLAGYVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAF-LAPAIAVLFIGFFG------------AIGVVWIF  386 (402)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc------------hHHHHHHH
Confidence            66677877776543 34455665 457899999999999999984 89999999999887            88899999


Q ss_pred             HHHHHHHHHHHHHH
Q 009130          508 AFVAFFGSLVAFLL  521 (543)
Q Consensus       508 ~~~~~~~~i~~~~~  521 (543)
                      +++.+++.++..++
T Consensus       387 a~~~~i~~~~~~~~  400 (402)
T TIGR00897       387 AALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888887776665

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=4.3e-27  Score=240.33  Aligned_cols=350  Identities=12%  Similarity=0.100  Sum_probs=241.0

Q ss_pred             cccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVW  110 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~  110 (543)
                      .+.+...+++++|.|+.+.+++.+...++.. .+++.|.+.||+|               ||+++..+.++++++.....
T Consensus        35 ~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g---------------~r~~l~~~~~~~~~~~~~~~   99 (399)
T PRK05122         35 LAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLG---------------PKKAVVFGLCGCALSGLLYL   99 (399)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccC---------------CcchHHHHHHHHHHHHHHHH
Confidence            3444445789999999999988777777775 7899999999999               99999999998888766532


Q ss_pred             HHHhccCCCC--ChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          111 ASVVGLLPRP--VPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       111 ~~~~~~~~~~--~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                      +  ..+.++.  .+++.+++.|+++|+|.+...+.....+.+++| ++|++++++...+..+|.++++++++.+.+..+|
T Consensus       100 ~--~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~  177 (399)
T PRK05122        100 L--AGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGL  177 (399)
T ss_pred             H--hhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccH
Confidence            2  2222210  025678889999999999999988888899997 7899999999999999999999998888766666


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ++.++...+..++.+   .+                                                            
T Consensus       178 ~~~~~~~~~~~~~~~---~~------------------------------------------------------------  194 (399)
T PRK05122        178 AGLGLLIMLLALLGL---LL------------------------------------------------------------  194 (399)
T ss_pred             HHHHHHHHHHHHHHH---HH------------------------------------------------------------
Confidence            655433222111100   00                                                            


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                          .++.+++++                  + +        +++       .+.++.++  .+|.......+.......
T Consensus       195 ----~~~~~~~~~------------------~-~--------~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~  234 (399)
T PRK05122        195 ----ARPRPAVPP------------------V-K--------GER-------LPFRRVLG--RVWPYGMGLALASIGFGT  234 (399)
T ss_pred             ----HhcCCCCCC------------------C-C--------ccc-------hhHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence                001110000                  0 0        000       00111111  122222222222222333


Q ss_pred             hhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHH
Q 009130          348 TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLF  426 (543)
Q Consensus       348 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~  426 (543)
                      ...+.+.+.++.|.+  +.+...+.+.++..+++++.|++.||+++|      +.+..+..+..++..++. .++....+
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (399)
T PRK05122        235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGL------RVAIVSLLVEILGLLLLWLAPSPWMAL  306 (399)
T ss_pred             HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            445667777777763  456677788889999999999999999643      456566666666655544 34445556


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHH
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMI  506 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~  506 (543)
                      +..++.|++.+..++.....+.|.+|+++++++.|+.+....+|.. ++|.+.|.+.|..|            |+..|++
T Consensus       307 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~g------------~~~~~~~  373 (399)
T PRK05122        307 IGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLG-ITGPLAGLVASWFG------------YPSIFLA  373 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC------------HHHHHHH
Confidence            6677889988887777777788899999999999999998888874 67778999999876            9999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 009130          507 MAFVAFFGSLVAFLLF  522 (543)
Q Consensus       507 ~~~~~~~~~i~~~~~~  522 (543)
                      .+++.+++.++.+.+.
T Consensus       374 ~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        374 AALAALLGLALTWLLY  389 (399)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8888887776655443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=6.9e-27  Score=241.10  Aligned_cols=353  Identities=12%  Similarity=0.001  Sum_probs=227.3

Q ss_pred             hhhHHHHHHHHHHHHHcC-CccccccccHHHHhhcCCChhhHH-HHHHHhhhc--c----cccchhhHhhhhcccccccc
Q 009130           10 NSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQNYDQSTLE-RVAVFKDMG--G----SAGILSGLLFSYVTLNHHHH   81 (543)
Q Consensus        10 ~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~-~~~~~~~~~--~----~~~~~~G~l~d~~g~~~~~~   81 (543)
                      ..||.......+..+... ....++...|.+.+|++.++.+.+ +..+...++  .    ..+++.|.+.||+|      
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~G------   84 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVG------   84 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhc------
Confidence            344554443333333333 355688899999999999888876 333222221  1    24678999999999      


Q ss_pred             cccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHH--------HHHHHHHHHhcCcchhhhhHHHHHhhhcC
Q 009130           82 QTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVP--------LMCLFIFTAAHAQNFFNTGNIVTGVMNFG  153 (543)
Q Consensus        82 ~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~g~g~~~~~~~~~~~~~fp  153 (543)
                               ||+++..+.+++++++++     ++++++   ++        .+++.|+++|++.+...+....+++||+|
T Consensus        85 ---------rr~~l~~~~~~~~~~~~l-----~~~~~~---~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  147 (434)
T PRK15075         85 ---------RRKGLIVTLSIMASGTLL-----IAFVPG---YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT  147 (434)
T ss_pred             ---------hHHHHHHHHHHHHHHHHH-----HHhCCc---HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence                     999999999999999999     777776   44        46889999999999999988899999998


Q ss_pred             -CCCcchhHHHHHhhhhhHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhh
Q 009130          154 -HYSGTIVGILKGFVGLSGAVLTQVYKTVC--------NGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNA  224 (543)
Q Consensus       154 -~~rg~~~gi~~~~~~lg~~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (543)
                       ++|++++++...+..+|..+++.++..+.        +..+|++.+....+...+.    .+.                
T Consensus       148 ~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~----~~~----------------  207 (434)
T PRK15075        148 PGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI----FLI----------------  207 (434)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH----HHH----------------
Confidence             68999999999888888877776666542        2345666665433221100    000                


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccc
Q 009130          225 FSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESK  304 (543)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (543)
                                                                      +..+++.+           +      .  +++
T Consensus       208 ------------------------------------------------~~~~~e~~-----------~------~--~~~  220 (434)
T PRK15075        208 ------------------------------------------------RRSLEETE-----------E------F--LAR  220 (434)
T ss_pred             ------------------------------------------------HHhcCCCH-----------H------H--HHh
Confidence                                                            01000000           0      0  000


Q ss_pred             hhcccccccchhhcchhHHHhhcchhHHHHHH-HHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhcc
Q 009130          305 VTAAFDDKILKDEEDMNLLQAMCTGNFWFLCI-ATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRF  382 (543)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l-~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~  382 (543)
                          +++.    +.+...++..+++..+.... ..++.....+....+.|.++++ .|++..++++...+..+++.++++
T Consensus       221 ----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  292 (434)
T PRK15075        221 ----KHRP----SMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLP  292 (434)
T ss_pred             ----hhcc----ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                0000    00011223344555554332 2333334455677788999876 699998988888899999999999


Q ss_pred             ccccchhhhhhhcCCCchHHHHHHHHHHHH-HHHH--HhhcCc--chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchh
Q 009130          383 GAGYGSDVFLHKLGWARPIFMVITLVAMSI-GHIA--IASGFP--GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMG  457 (543)
Q Consensus       383 ~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i-~~~~--~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g  457 (543)
                      +.|+++||++||      +.+..+.+...+ ....  ....++  ........+.+++.+...+....+..|.+|++.++
T Consensus       293 ~~g~l~Dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg  366 (434)
T PRK15075        293 IGGALSDRIGRR------PVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRT  366 (434)
T ss_pred             HHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccc
Confidence            999999999754      344333332222 2111  111222  12233344556677766666677889999999999


Q ss_pred             hHHHHH-Hhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          458 TIFNTI-SIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       458 ~~~g~~-~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      ++.|+. +++..+++. ++|.+.|++.|..|
T Consensus       367 ~~~g~~~~~~~~~~g~-~~p~~~g~i~~~~g  396 (434)
T PRK15075        367 AGFSLAYSLATAIFGG-FTPAISTWLIHVTG  396 (434)
T ss_pred             hheeHHHHHHHHHHhh-hHHHHHHHHHHhcC
Confidence            999986 444445453 67889999999876

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=1.6e-26  Score=234.51  Aligned_cols=349  Identities=11%  Similarity=0.051  Sum_probs=243.5

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      +......|.+++|+|++.++.+++.+...++.. .+++.|++.||+|               ||+++.++.++++++.++
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYS---------------LKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCc---------------cHHHHHHHHHHHHHHHHH
Confidence            455667799999999999999977777777776 6889999999999               999999999999999998


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           ++++++   ++.+++.|+++|++.+...+.....+.+++| ++|++++++...+..+|..+++++++.+.+..+|
T Consensus        85 -----~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw  156 (382)
T PRK10091         85 -----FTLSSS---YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSW  156 (382)
T ss_pred             -----HHHhCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccH
Confidence                 777776   8999999999999999988888888899998 5799999999999999999999998888777778


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ++.+....+...+..+....                                                            
T Consensus       157 r~~f~~~~~~~~~~~~~~~~------------------------------------------------------------  176 (382)
T PRK10091        157 RYTFLLIAVFNIAVLASIYF------------------------------------------------------------  176 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------------------------------------------------------------
Confidence            87776655433221111000                                                            


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                         ..++.   ++   +              +           +.+ .    ....+.++++.+|......++.....+.
T Consensus       177 ---~lp~~---~~---~--------------~-----------~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (382)
T PRK10091        177 ---WVPDI---RD---E--------------A-----------KGG-L----REQFHFLRSPAPWLIFAATMFGNAGVFA  217 (382)
T ss_pred             ---hCCCC---Cc---c--------------c-----------ccC-H----HHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence               00000   00   0              0           000 0    0113456777777766555544333334


Q ss_pred             hhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh--hcCcch
Q 009130          348 TMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA--SGFPGN  424 (543)
Q Consensus       348 ~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~--~~~~~~  424 (543)
                      ...+.+++.+ ..|+++.+.+.+.++..++.++++++.|++.||+++|      +.+..+..+..++.+++.  .++...
T Consensus       218 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~  291 (382)
T PRK10091        218 WFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL------RIAAVTDFIIVLALLMLFFFGGMKTA  291 (382)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch------hHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4455555665 4799999999999999999999999999999999643      455556666565554432  223333


Q ss_pred             HHHHHHHHHhhhhhhhhhHH-HHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHH
Q 009130          425 LFVGTMIVGVCYGSQWSLMP-TITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLS  503 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~  503 (543)
                      ..+..++.+++..+..+... ....+..+++..+.+.  .+....+|. .++|.+.|.+.|..+           +|+..
T Consensus       292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~~Gp~~~G~l~~~~~-----------~~~~~  357 (382)
T PRK10091        292 SLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGS-AIGAYCGGMMLTLGL-----------AYNYV  357 (382)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHH-HHHHHHhHHHHHccc-----------CcchH
Confidence            34444455555444333333 3344545555555543  345567787 488999999999755           39999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009130          504 FMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       504 f~~~~~~~~~~~i~~~~  520 (543)
                      +.+.++.+++.......
T Consensus       358 ~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        358 ALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99887766665554433

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=8.9e-28  Score=244.96  Aligned_cols=383  Identities=13%  Similarity=0.034  Sum_probs=256.9

Q ss_pred             ccchhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccc
Q 009130            7 LSTNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTR   84 (543)
Q Consensus         7 ~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~   84 (543)
                      +.++++|..++.+.+..+..+. .+.++.+.|.+.+++|.+..+.+++.+...++.. ..++.|++.||+|         
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g---------   80 (398)
T TIGR00895        10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIG---------   80 (398)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh---------
Confidence            3445566666655555544443 4556778899999999999999977777766665 6789999999999         


Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHH
Q 009130           85 TRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGIL  163 (543)
Q Consensus        85 ~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~  163 (543)
                            ||+++..+.++.+++.++     ..++++   ++.+++.|++.|++.+...+....++.|++| ++|++++++.
T Consensus        81 ------~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  146 (398)
T TIGR00895        81 ------RKRVLLWSILLFSVFTLL-----CALATN---VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLM  146 (398)
T ss_pred             ------hHHHHHHHHHHHHHHHHH-----HHHccc---hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhH
Confidence                  999999999999988888     555665   7888999999999999999999999999998 6799999999


Q ss_pred             HHhhhhhHHHHHHHHHHhcCCCchhHHHHHHH-HHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHH
Q 009130          164 KGFVGLSGAVLTQVYKTVCNGNPSTYILVLAL-LPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVM  242 (543)
Q Consensus       164 ~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (543)
                      ..+..+|..+++.+.+.+.+..+|++.+.... ++.+..++...++++.++...++ +........              
T Consensus       147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------  211 (398)
T TIGR00895       147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIV--------------  211 (398)
T ss_pred             hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHH--------------
Confidence            99999999999999998887777877666553 44443333333433322100000 000000000              


Q ss_pred             hhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhH
Q 009130          243 ENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNL  322 (543)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (543)
                                                    ++..++..   +    +.++.     .++++      ++.+..++.....
T Consensus       212 ------------------------------~~~~~~~~---~----~~~~~-----~~~~~------~~~~~~~~~~~~~  243 (398)
T TIGR00895       212 ------------------------------NAIAPQMQ---A----EAQSA-----LPEQK------ATQGTKRSVFKAL  243 (398)
T ss_pred             ------------------------------HHHHHhcc---c----ccccc-----ccccc------cccchhhHHHHHH
Confidence                                          00000000   0    00000     00000      0000000000111


Q ss_pred             HHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          323 LQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       323 ~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      ++..+.+..+.+.+..++..........+.|.+.++.|+++.+.+...++..++..+++++.|+++||+++|      ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~  317 (398)
T TIGR00895       244 FQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR------VT  317 (398)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH------HH
Confidence            111123344444444444445555566777877788899999999999999999999999999999999643      33


Q ss_pred             HHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGR  481 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~  481 (543)
                      .....+..+....+.. ..+....++..++.|++.+...+...+++.|.+|+++++++.|+.+....+|.. ++|.+.|+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~g~~~~G~  396 (398)
T TIGR00895       318 ALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAI-IGPILAGY  396 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHhHHh
Confidence            3333333333333332 344455666778889999988888999999999999999999999998999984 88888886


Q ss_pred             h
Q 009130          482 I  482 (543)
Q Consensus       482 l  482 (543)
                      +
T Consensus       397 l  397 (398)
T TIGR00895       397 L  397 (398)
T ss_pred             c
Confidence            5

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=4.4e-26  Score=235.09  Aligned_cols=379  Identities=11%  Similarity=0.017  Sum_probs=242.9

Q ss_pred             hhHHHHHHHHHHHHHcC-CccccccccHH-HHhhc--CCChhhHHHHHHH-----hhhcc-cccchhhHhhhhccccccc
Q 009130           11 SKWIATVASIWIQCSVG-TTYTFSIYSST-LKSTQ--NYDQSTLERVAVF-----KDMGG-SAGILSGLLFSYVTLNHHH   80 (543)
Q Consensus        11 ~~w~~~~~~~~~~~~~g-~~~~~~~~~~~-l~~~~--~~s~~~~~~~~~~-----~~~~~-~~~~~~G~l~d~~g~~~~~   80 (543)
                      ++|.+...+.+.....+ ....++.+.|. +.+++  +.++. .+++.+.     ..++. ..+++.|+++||+|     
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~G-----   92 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLG-----   92 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc-----
Confidence            44554444444444433 34456666664 55565  66666 3443221     11222 24677899999998     


Q ss_pred             ccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHH--------HHHHHHHHHhcCcchhhhhHHHHHhhhc
Q 009130           81 HQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVP--------LMCLFIFTAAHAQNFFNTGNIVTGVMNF  152 (543)
Q Consensus        81 ~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~g~g~~~~~~~~~~~~~f  152 (543)
                                ||+++..+.+++++++++     ++++++   +.        .++++|+++|++.|..++....+++||+
T Consensus        93 ----------rr~~l~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  154 (438)
T PRK09952         93 ----------RKRMLMLTVWMMGIATAL-----IGLLPS---FSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA  154 (438)
T ss_pred             ----------cHHHHHHHHHHHHHHHHH-----HhcCCc---HHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC
Confidence                      999999999999999999     888887   44        4788999999999999999999999999


Q ss_pred             C-CCCcchhHHHHHhhhhhHHHHHHHHHHhc--------CCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhh
Q 009130          153 G-HYSGTIVGILKGFVGLSGAVLTQVYKTVC--------NGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLN  223 (543)
Q Consensus       153 p-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (543)
                      | ++||+..+....+..+|..+++.+...+.        ...+||+.+++..++.++.+.   ..+..|           
T Consensus       155 p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~---l~~~~~-----------  220 (438)
T PRK09952        155 PKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALW---VRNGME-----------  220 (438)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHH---HHHhCC-----------
Confidence            8 68999999999999999988877766543        234677777665554322110   000000           


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCcc
Q 009130          224 AFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDES  303 (543)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (543)
                                                                        |+++..+   +.           ++.++  
T Consensus       221 --------------------------------------------------es~~~~~---~~-----------~~~~~--  234 (438)
T PRK09952        221 --------------------------------------------------ESAEFEQ---QQ-----------HEQAA--  234 (438)
T ss_pred             --------------------------------------------------CChhHHH---HH-----------hhccc--
Confidence                                                              0000000   00           00000  


Q ss_pred             chhcccccccchhhcchhHHHhhcchhHHHHHHH-HHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhc
Q 009130          304 KVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIA-TLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGR  381 (543)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~  381 (543)
                            .++     +....+..+++++.|...+. .++.....+....+.|.+.+ +.|++.+.......+.++...++.
T Consensus       235 ------~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~  303 (438)
T PRK09952        235 ------AKK-----RIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI  303 (438)
T ss_pred             ------ccc-----cCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                  000     00111234567776665543 33334445556677887775 468887766556667777888899


Q ss_pred             cccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----hcCcch-HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcch
Q 009130          382 FGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA----SGFPGN-LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHM  456 (543)
Q Consensus       382 ~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~-~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~  456 (543)
                      ++.|+++||++||      +.+..+.++.+++.+.+.    ..+... ..+..++.+++.+...+..+++++|.+|++.|
T Consensus       304 ~~~g~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r  377 (438)
T PRK09952        304 PCFAWLADRFGRR------RVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYR  377 (438)
T ss_pred             HHHHHHHHHhCch------HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchh
Confidence            9999999999654      445555444444332221    122222 23344555777777778888999999999999


Q ss_pred             hhHHHHHH-hhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          457 GTIFNTIS-IACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       457 g~~~g~~~-~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      +++.|+.+ ++..+++ .++|.+.+++.|..+.          +|...+.+.+++.+++.+..+.+
T Consensus       378 ~tg~g~~~~~~~~lgg-~~~p~i~g~l~~~~~~----------~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        378 YSGAGVGYQVASVVGG-GFTPFIAAALVTYFGG----------SWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHhHHHHHHHHHHH-HHHHHHHHHHHHhcCC----------CchHHHHHHHHHHHHHHHHHHHc
Confidence            99999965 4455777 4889999999886531          37788887777777777665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=2.2e-26  Score=233.45  Aligned_cols=341  Identities=11%  Similarity=0.063  Sum_probs=242.1

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      ...+.+.|.+.+|+|.|..|++++.+.+.++.. .+++.|++.||+|               ||+++..+.++.+++..+
T Consensus        23 ~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g---------------~k~~~~~~~~~~~~~~~~   87 (381)
T PRK03633         23 AVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIG---------------FNRSYYLASLIFAAGCAG   87 (381)
T ss_pred             hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Confidence            345677899999999999999988888787776 6889999999999               999999999999999888


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           ++.+++   ++.+++.|+++|++.+...+.....+.++.| ++|++++++...+.++|..+++.+.+.+.+...+
T Consensus        88 -----~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  159 (381)
T PRK03633         88 -----LGLMVG---FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMS  159 (381)
T ss_pred             -----HHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence                 666666   7899999999999999888877777778886 6899999999999999999999888876543211


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ...+....+..                                                            ..+.+.   
T Consensus       160 ~~~~~~~~~~~------------------------------------------------------------~~~~~~---  176 (381)
T PRK03633        160 VLPWVTGLVLA------------------------------------------------------------AILPLL---  176 (381)
T ss_pred             hHHHHHHHHHH------------------------------------------------------------HHHHHH---
Confidence            11111000000                                                            000000   


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                         ..+.++++ +                  +          + +     +..+.++.++++.++......+........
T Consensus       177 ---~~~~~~~~-~------------------~----------~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (381)
T PRK03633        177 ---FTRILNQQ-A------------------E----------N-H-----DSTSIWPMLKLRQARLGVNGCIISGIVLGS  218 (381)
T ss_pred             ---HhcccCCC-C------------------C----------C-C-----CCCCHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence               00110000 0                  0          0 0     001234556777777554333332222333


Q ss_pred             hhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHH
Q 009130          348 TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFV  427 (543)
Q Consensus       348 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~  427 (543)
                      ...++|.+.++.|.++++.+...+...++..++++..|++.||+++|      +.+..+.....++...+.  .....+.
T Consensus       219 ~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~------~~l~~~~~~~~~~~~~~~--~~~~~~~  290 (381)
T PRK03633        219 LYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL------LVLRVQVFVVILGSIAML--SQAAMAP  290 (381)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH------HHHHHHHHHHHHHHHHHh--hhHHHHH
Confidence            45567888888899999999999999999999999999999999644      555556555555544333  1223334


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHH
Q 009130          428 GTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIM  507 (543)
Q Consensus       428 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~  507 (543)
                      ...+.|++.....+...+.+.|..|+++++...+..+....+|. .++|.+.|++.|..+            ++..|++.
T Consensus       291 ~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~-~igp~~~G~l~~~~g------------~~~~f~~~  357 (381)
T PRK03633        291 ALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGS-LLGPSFTAMLMQNYS------------DNLLFIMI  357 (381)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC------------ccHHHHHH
Confidence            55666776666677777778898988888888888888888998 589999999999887            88888887


Q ss_pred             HHHHHHHH
Q 009130          508 AFVAFFGS  515 (543)
Q Consensus       508 ~~~~~~~~  515 (543)
                      +.+.++..
T Consensus       358 ~~~~l~~~  365 (381)
T PRK03633        358 ASVSFIYL  365 (381)
T ss_pred             HHHHHHHH
Confidence            76665444

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.96  E-value=1.5e-26  Score=242.56  Aligned_cols=381  Identities=12%  Similarity=0.054  Sum_probs=267.5

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      ...+...|.+.+++|.+..+.+++.+.+.++.. ..++.|++.||+|               ||+++..+.++++++.++
T Consensus        19 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~~~~~   83 (485)
T TIGR00711        19 TIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFG---------------TRRLFLISTFAFTLGSLL   83 (485)
T ss_pred             HHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhC---------------cHHHHHHHHHHHHHHHHH
Confidence            345677899999999999999988888887776 6778999999999               999999999999999999


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           ++.+++   ++.+++.|+++|++.+...+....++.+++| ++|++++++...+..+|..+++.+++.+.+..+|
T Consensus        84 -----~~~~~~---~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w  155 (485)
T TIGR00711        84 -----CGVAPN---LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW  155 (485)
T ss_pred             -----HhCcCC---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence                 777776   7999999999999999999999999999998 6899999999999999999999999999888889


Q ss_pred             hHHHHHHHHHHHHHHHHHh-heeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHH-hhcccchhhHHHHHHH-HHHHHh
Q 009130          188 TYILVLALLPTLVSLLFMS-HVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVM-ENLLTFSLWARIITFI-ILLLLL  264 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~  264 (543)
                      ++.+....+..++...... ..++.++   +.++..+.........+......... ++..++.+........ ......
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (485)
T TIGR00711       156 RWIFLINVPIGIIVVVVAFFILPRDKP---AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAI  232 (485)
T ss_pred             eehhhhhhHHHHHHHHHHHHHcCCccc---cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH
Confidence            9888877665555544333 3332211   11111111111111111111111111 1111221111111110 000000


Q ss_pred             hcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhch
Q 009130          265 ASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGS  344 (543)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~  344 (543)
                      ....   .++.    +                              ++     +.....+.++++.++...+..++....
T Consensus       233 ~~~~---~~~~----~------------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (485)
T TIGR00711       233 IAFV---VWEL----T------------------------------DD-----NPLVDLRLFKYRNFTIGCVYMSLLGLG  270 (485)
T ss_pred             HHHH---HHHH----c------------------------------CC-----CCccCHHHHcCCChHHHHHHHHHHHHH
Confidence            0000   0000    0                              00     001114577889888887777777666


Q ss_pred             hhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-h--c
Q 009130          345 GIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-S--G  420 (543)
Q Consensus       345 ~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~--~  420 (543)
                      .+....++|.++++ .|+++.+++....+..++..+++++.|++.||+++|      +.+..+.++.++++.++. .  .
T Consensus       271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~~~~g~~~~~~~~~~~~~~~~~  344 (485)
T TIGR00711       271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR------KLVTIGLILYAVGFYWRAFTFTP  344 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH------HHHHHHHHHHHHHHHHHhccCCC
Confidence            67777788988876 699999999999999999999999999999999643      566667777777666554 1  1


Q ss_pred             --CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 009130          421 --FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDR  485 (543)
Q Consensus       421 --~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~  485 (543)
                        +........++.|++.+..++.....+.+..|+++++++.|+.+....+|+. +++.+.|.+.+.
T Consensus       345 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~~i~g~~~~~  410 (485)
T TIGR00711       345 DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS-IGTALITTILTN  410 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence              1223455567788888887777777777889999999999999999888884 788788887764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=3.6e-26  Score=232.87  Aligned_cols=348  Identities=11%  Similarity=0.062  Sum_probs=235.7

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      +.+..++.+|+|.|..+.+++.+.+.++.. .+++.|+++||+|               ||+++..+.+.+.++.+...+
T Consensus        36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g---------------~r~~l~~~~~~~~~~~~~~~~  100 (392)
T PRK12382         36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYG---------------AKRSALQGMLACGLAGLAYLL  100 (392)
T ss_pred             hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc---------------chHHHHHHHHHHHHHHHHHHh
Confidence            344346789999999999977777777765 7999999999999               999999998887776543211


Q ss_pred             HHhccCCC--CChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          112 SVVGLLPR--PVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       112 ~~~~~~~~--~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                        ++..+.  ..+++.+++.|+++|+|.+...+...+.+.+++| ++|++++++...+..+|.++++++++.+.+..+|+
T Consensus       101 --~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~  178 (392)
T PRK12382        101 --AAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFA  178 (392)
T ss_pred             --hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence              222111  0137888999999999999888888888899998 78999999999999999999999988876655565


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      +...+..+..++.+   .+                                                             
T Consensus       179 ~~~~~~~~~~~~~~---~~-------------------------------------------------------------  194 (392)
T PRK12382        179 ALALTTMVLPLLAW---AF-------------------------------------------------------------  194 (392)
T ss_pred             HHHHHHHHHHHHHH---HH-------------------------------------------------------------
Confidence            44332221111000   00                                                             


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                         .++.+++++                + + +        ++.        +.++.++  .+|...+..++........
T Consensus       195 ---~~~~~~~~~----------------~-~-~--------~~~--------~~~~~~~--~~~~~~~~~~l~~~~~~~~  235 (392)
T PRK12382        195 ---NGTVRKVPA----------------H-A-G--------ERP--------SLWSVVG--LIWKPGLGLALQGVGFAVI  235 (392)
T ss_pred             ---HHhccCCCC----------------C-c-c--------cCc--------hHHHHHH--HHHHhHHHHHHHHHHHhHH
Confidence               001011000                0 0 0        000        0011111  1111111111111222234


Q ss_pred             hhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHH
Q 009130          349 MNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFV  427 (543)
Q Consensus       349 ~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~  427 (543)
                      ..+.+.++++.|++  +.+...+...++..+++++.|++.||+++|      +.+..+..+..++.+++. .++....++
T Consensus       236 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (392)
T PRK12382        236 GTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV------KVAIVSLLVETVGLLLLWLAPTAWVALA  307 (392)
T ss_pred             HHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC------eehHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            45667777777765  355666778888899999999999999754      345555555555555544 344444556


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHH
Q 009130          428 GTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIM  507 (543)
Q Consensus       428 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~  507 (543)
                      ..++.|++.+...+.....+.|.+|++++|++.|+.+....+|.. ++|.+.|.+.|..|            |+..|.+.
T Consensus       308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-ig~~~~g~l~~~~g------------~~~~~~~~  374 (392)
T PRK12382        308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYG-VSGPLAGMLATSFG------------YPSVFLAG  374 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC------------chHHHHHH
Confidence            677788888877777778888999999999999999999999884 88999999999887            99999999


Q ss_pred             HHHHHHHHHHHHHH
Q 009130          508 AFVAFFGSLVAFLL  521 (543)
Q Consensus       508 ~~~~~~~~i~~~~~  521 (543)
                      +++.+++.++.+..
T Consensus       375 ~~~~~~~~~~~~~~  388 (392)
T PRK12382        375 AISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHhh
Confidence            88888777765544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.96  E-value=5.3e-27  Score=240.95  Aligned_cols=365  Identities=10%  Similarity=-0.015  Sum_probs=253.6

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      ....|.+.++++.++.+.+++.+...++.. .+++.|++.||+|               ||+++..+.++.+++......
T Consensus        37 ~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g---------------~~~~l~~~~~~~~~~~~~~~~  101 (417)
T PRK10489         37 GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYD---------------RKKLILLARGTCGLGFIGLAL  101 (417)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcC---------------CceEEEehHHHHHHHHHHHHH
Confidence            455688888899999999988787777776 6889999999999               999999888888877766332


Q ss_pred             HHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHH
Q 009130          112 SVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYI  190 (543)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~  190 (543)
                      ......++   ++.+++.|+++|++.+...++....+.+++| ++|+++.++...+.++|..+++.+++.+.+..+|+|.
T Consensus       102 ~~~~~~~~---~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~  178 (417)
T PRK10489        102 NAFLPEPS---LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWN  178 (417)
T ss_pred             HHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHH
Confidence            11111233   7888889999999988888888888999998 6799999999999999999999998887665556655


Q ss_pred             HHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccccc
Q 009130          191 LVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRV  270 (543)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (543)
                      +....+..++..+....                                                               
T Consensus       179 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------  195 (417)
T PRK10489        179 YGLAAAGTFITLLPLLR---------------------------------------------------------------  195 (417)
T ss_pred             HHHHHHHHHHHHHHHHh---------------------------------------------------------------
Confidence            55443332221111100                                                               


Q ss_pred             ccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhh
Q 009130          271 AITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMN  350 (543)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~  350 (543)
                       .++.+++++                 +.            +++.++.....+..+++|.++...+..++... ...+..
T Consensus       196 -l~~~~~~~~-----------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  244 (417)
T PRK10489        196 -LPALPPPPQ-----------------PR------------EHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRV  244 (417)
T ss_pred             -CCCCCCCCc-----------------cc------------ccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHH
Confidence             011000000                 00            00001111234556778877665554443322 234556


Q ss_pred             chHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHH
Q 009130          351 NIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVG  428 (543)
Q Consensus       351 ~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~  428 (543)
                      +.|.+.++ .|+++.+.+++.+...++..++.++.+++.||.+      +++.+..+.++..++.+++. .++.....+.
T Consensus       245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (417)
T PRK10489        245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSAR------PGLLMLLSTLGSFLAVGLFGLMPMWILAVLC  318 (417)
T ss_pred             hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccC------cchHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence            77888887 7999999999999999999999999999998752      23455556666666655554 3333344556


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHH
Q 009130          429 TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA  508 (543)
Q Consensus       429 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~  508 (543)
                      .++.|++.+...+...+++.|..|++.+|++.|+.+....+|. .++|.+.|.+.|..|            ++..++..+
T Consensus       319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~g~~l~G~l~~~~g------------~~~~~~~~~  385 (417)
T PRK10489        319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGD-AIGAALLGGLGAMMT------------PVASASASG  385 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhH-hHHHHHHHHHHHHhc------------hhhHHHHHH
Confidence            6677887776666667888999999999999999998888888 489999999999887            677777776


Q ss_pred             HHHHHHHHHHHHHhhcchhh
Q 009130          509 FVAFFGSLVAFLLFLRTRRF  528 (543)
Q Consensus       509 ~~~~~~~i~~~~~~~~~~~~  528 (543)
                      +..++..++.....++.|+.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~  405 (417)
T PRK10489        386 FGLLIIGVLLLLVLGELRRF  405 (417)
T ss_pred             HHHHHHHHHHHHhccccccc
Confidence            65555555544444444443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.95  E-value=8.8e-27  Score=245.06  Aligned_cols=390  Identities=12%  Similarity=0.074  Sum_probs=249.6

Q ss_pred             cchhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccc
Q 009130            8 STNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRT   85 (543)
Q Consensus         8 ~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~   85 (543)
                      .++++|..+....+..+..+. .+..+...|.+.+++|+++.+.+++.+.+.++.. .+++.|++.||+|          
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g----------   83 (496)
T PRK03893         14 LNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYG----------   83 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------
Confidence            345566655444444333332 3445667799999999999999977666666665 6889999999999          


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHH
Q 009130           86 RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILK  164 (543)
Q Consensus        86 ~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~  164 (543)
                           ||+++.++.++.+++.++     .+++++   ++.+++.|++.|++.+..++....++.+++| ++|++++++..
T Consensus        84 -----~r~~~~~~~~~~~~~~~~-----~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  150 (496)
T PRK03893         84 -----RRLAMVISIVLFSVGTLA-----CGFAPG---YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLI  150 (496)
T ss_pred             -----cHHHHHHHHHHHHHHHHH-----HHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence                 999999999999999988     556665   7889999999999999999999999999998 67999999999


Q ss_pred             HhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhh
Q 009130          165 GFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMEN  244 (543)
Q Consensus       165 ~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (543)
                      .+..+|..+++.+...+.+..+|++.+.++.++..+.++..   ...|++                              
T Consensus       151 ~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~---~~~p~~------------------------------  197 (496)
T PRK03893        151 SGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLR---KNLPEA------------------------------  197 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH---HhCCCc------------------------------
Confidence            99999999999999998888889888876555443322111   111110                              


Q ss_pred             cccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcc----h
Q 009130          245 LLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEED----M  320 (543)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  320 (543)
                                                     + +.++  +.+  +.++      ..+..+.....++........    .
T Consensus       198 -------------------------------~-~~~~--~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (496)
T PRK03893        198 -------------------------------E-DWKE--KHA--GKAP------VRTMVDILYRGEHRIINILLTLAAAA  235 (496)
T ss_pred             -------------------------------h-hhhh--hcc--cccc------chhHHHHHhcchhHHHHHHHHHHHHH
Confidence                                           0 0000  000  0000      000000000000000000000    0


Q ss_pred             hHH-----------------------------H--hhcchhHHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHH
Q 009130          321 NLL-----------------------------Q--AMCTGNFWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINS  368 (543)
Q Consensus       321 ~~~-----------------------------~--~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~  368 (543)
                      ...                             +  ..+.+.+.......+......+....++|.+++ +.|+++.+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~  315 (496)
T PRK03893        236 ALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVAN  315 (496)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHH
Confidence            000                             0  000011111111111111112234567788885 78999999999


Q ss_pred             HHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcc--hHHHHHHHHHhhhhhhhhhHHH
Q 009130          369 LISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPG--NLFVGTMIVGVCYGSQWSLMPT  445 (543)
Q Consensus       369 ~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~--~~~~~~~l~G~~~g~~~~~~~~  445 (543)
                      +.+...++..+++++.|+++||+++|      +.+..+.++..+..+.+. ..+..  ......++.+....+..+..+.
T Consensus       316 ~~~~~~~~~~~g~~~~g~l~dr~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (496)
T PRK03893        316 VLFFSGFGAAVGCCVGGFLGDWLGTR------KAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPK  389 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHH
Confidence            99999999999999999999999654      455555544444433322 22222  1222223333333334556778


Q ss_pred             HHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHH
Q 009130          446 ITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFG  514 (543)
Q Consensus       446 ~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~  514 (543)
                      ++.|.+|++++++++|+.+....+|+ .++|.+.|.+.|..|            |+..+...++.+.+.
T Consensus       390 ~~~~~~~~~~~g~~~~~~~~~~~~g~-~lgp~l~g~l~~~~g------------~~~~~~~~~~~~~~~  445 (496)
T PRK03893        390 LIGGYFDTEQRAAGLGFTYNVGALGG-ALAPILGALIAQRLD------------LGTALASLSFSLTFV  445 (496)
T ss_pred             HHHhhCCHHHhhcccchhhhhhhHHH-HHHHHHHHHHhccCC------------hHHHHHHHHHHHHHH
Confidence            88999999999999999988888988 489999999999887            777776655444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.95  E-value=5.8e-26  Score=231.33  Aligned_cols=378  Identities=9%  Similarity=0.069  Sum_probs=252.3

Q ss_pred             cccccccchhhHHHHHHHHHHHHHcCCccccccccHHHHhhcCCChhhHHHHHHHhhhcc-cccchhhHhhhhccccccc
Q 009130            2 RMEERLSTNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGG-SAGILSGLLFSYVTLNHHH   80 (543)
Q Consensus         2 ~~~~~~~~~~~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~   80 (543)
                      ||+|-++-.+ ++.+...++..+.  ....++.+.+++++++|++..+.+.+.+...+.. ..+++.|++.||+|     
T Consensus         3 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g-----   74 (400)
T PRK11646          3 RVSQARNLGK-YFLLIDNMLVVLG--FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFG-----   74 (400)
T ss_pred             CCcccccccH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhC-----
Confidence            4555433333 5544444433332  2334677777889999999999996666555554 47889999999999     


Q ss_pred             ccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcch
Q 009130           81 HQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTI  159 (543)
Q Consensus        81 ~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~  159 (543)
                                ||+++..+.++.+++.++     +..+++   ++.+++.|+++|++.+...+.....+.+++| ++|+++
T Consensus        75 ----------~k~~l~~~~~~~~~~~~~-----~~~~~~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a  136 (400)
T PRK11646         75 ----------AKPMIVTGMLMRAAGFAT-----MAIAHE---PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRF  136 (400)
T ss_pred             ----------chHHHHHHHHHHHHHHHH-----HHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence                      999999999999999988     555555   7888999999999998888888888999998 689999


Q ss_pred             hHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHH
Q 009130          160 VGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVI  239 (543)
Q Consensus       160 ~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (543)
                      +|+......+|..++|++++.+. ..+|++.+....+..++..+...+                                
T Consensus       137 ~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~--------------------------------  183 (400)
T PRK11646        137 FSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAW--------------------------------  183 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence            99999999999999999998886 455666555443322221100000                                


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcc
Q 009130          240 TVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEED  319 (543)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (543)
                                                     .. +  +.++   +              +          .++    +..
T Consensus       184 -------------------------------~~-~--~~~~---~--------------~----------~~~----~~~  198 (400)
T PRK11646        184 -------------------------------LL-P--AYKL---S--------------T----------VRT----PVR  198 (400)
T ss_pred             -------------------------------hC-C--cccc---c--------------c----------cch----hhH
Confidence                                           00 0  0000   0              0          000    011


Q ss_pred             hhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCc
Q 009130          320 MNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWAR  399 (543)
Q Consensus       320 ~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r  399 (543)
                      ..+++.++++.++...+..+...........+.|.+.++.+.++.+.+.+.++.++....+....+++.||..     +.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~-----~~  273 (400)
T PRK11646        199 EGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRF-----RL  273 (400)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ch
Confidence            2345677888887665554433333333455678888887667788888888877766655555555555421     11


Q ss_pred             hHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhh
Q 009130          400 PIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRI  478 (543)
Q Consensus       400 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l  478 (543)
                      +..+..+.++..++.+++. .++.....+..++.+++.+...+...+++.+..|++++|+++|+.+....+|. .++|.+
T Consensus       274 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~ig~~l  352 (400)
T PRK11646        274 EHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGG-AIGYIG  352 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHH-Hhcccc
Confidence            2334455555566655554 33444444555667777777777788899999999999999999999999998 489999


Q ss_pred             hhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHH
Q 009130          479 IGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLV  517 (543)
Q Consensus       479 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~  517 (543)
                      .|.+.|..++.        ..+...++......+++.+.
T Consensus       353 ~G~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        353 GGWLFDLGKAL--------NQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             hHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHH
Confidence            99999986420        11345555555555554433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.8e-27  Score=241.89  Aligned_cols=372  Identities=13%  Similarity=0.072  Sum_probs=269.6

Q ss_pred             HhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCC
Q 009130           40 KSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLP  118 (543)
Q Consensus        40 ~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~  118 (543)
                      ..++++|..|-+++-+.+..|+. .++|.|+++||||               .|+++..+.++.++++++     ...+.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G---------------~r~v~~~~~~~sa~~t~l-----~P~aa  124 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFG---------------ARRVFFISGLISALLTLL-----TPLAA  124 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcC---------------chHHHHHHHHHHHHHHHH-----HHHHH
Confidence            45799999999988888888887 6779999999999               999999999999999999     44333


Q ss_pred             CCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC-CchhHHHHHHHH
Q 009130          119 RPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG-NPSTYILVLALL  196 (543)
Q Consensus       119 ~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~-~~~~~~~~~~~~  196 (543)
                      +. .++.+++.|++||++.|..+|+...+.++|.| +||++..++..++..+|.++.-++.+.+.+. .+|++.+++.+.
T Consensus       125 ~~-~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~  203 (466)
T KOG2532|consen  125 SI-GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGI  203 (466)
T ss_pred             Hh-cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHH
Confidence            22 25677889999999999999999999999998 7999999999999999999999999999987 788877766554


Q ss_pred             HHHHH-HHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccc
Q 009130          197 PTLVS-LLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITAD  275 (543)
Q Consensus       197 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (543)
                      ..++. ++...+..+.                                                                
T Consensus       204 ~g~i~~~~w~~~~~d~----------------------------------------------------------------  219 (466)
T KOG2532|consen  204 VGLIWFILWFLFYSDS----------------------------------------------------------------  219 (466)
T ss_pred             HHHHHHHHHHHHhcCC----------------------------------------------------------------
Confidence            44332 3322232222                                                                


Q ss_pred             cccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHH
Q 009130          276 REDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQV  355 (543)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~  355 (543)
                      |++++            ..+++|.+..++   ...+++.++..+.+++++++++.+|.+++..+......+.+..+.|.|
T Consensus       220 P~~h~------------~is~~El~~I~~---~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY  284 (466)
T KOG2532|consen  220 PSKHP------------NISEKELKYIEK---GKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTY  284 (466)
T ss_pred             cccCC------------CCCHHHHHHHHh---cccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            22111            001111000000   000000111134678999999999999999999988889999999999


Q ss_pred             HHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCC----CchHHHHHHHHHHHHHHHHHhh-cC-cchHHHH
Q 009130          356 GES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGW----ARPIFMVITLVAMSIGHIAIAS-GF-PGNLFVG  428 (543)
Q Consensus       356 ~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~----~r~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~  428 (543)
                      +++ +|+|..+.|++.++..+...+.++++|.++||+.+| ..    .|+..-.++....+++++.+.. +. .....+.
T Consensus       285 ~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~  363 (466)
T KOG2532|consen  285 LKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVI  363 (466)
T ss_pred             HHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHH
Confidence            987 699999999999999999999999999999999765 22    3455555566666666666653 22 2212222


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHH
Q 009130          429 TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA  508 (543)
Q Consensus       429 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~  508 (543)
                      .+....+..+..............+++.+...|+.+....+.+ +++|.+.|.+.... +        ...|+..|++.+
T Consensus       364 ~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~-~~~P~~vg~~~~~~-t--------~~eW~~VF~i~a  433 (466)
T KOG2532|consen  364 LLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAG-FIAPLLVGIIVTDN-T--------REEWRIVFLIAA  433 (466)
T ss_pred             HHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHH-HHHHHheeeEeCCC-C--------HHHHHHHHHHHH
Confidence            2223333333322222223333256899999999999999998 48999999888421 1        124999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 009130          509 FVAFFGSLVAFLLF  522 (543)
Q Consensus       509 ~~~~~~~i~~~~~~  522 (543)
                      ++.+++.++..++.
T Consensus       434 ~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  434 GILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHhchheeEee
Confidence            99999987755554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.95  E-value=1.3e-25  Score=229.98  Aligned_cols=356  Identities=12%  Similarity=-0.029  Sum_probs=248.2

Q ss_pred             cchhhHHHHHHHHHHHHHcC-CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccc
Q 009130            8 STNSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRT   85 (543)
Q Consensus         8 ~~~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~   85 (543)
                      .+++.|+..+...+..+... ....+.+..|.+.+|+|+|+.+.++..+.+.++.. .+++.|.+.||+|          
T Consensus         7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g----------   76 (406)
T PRK15402          7 LGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIG----------   76 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------
Confidence            35566666555555443322 23334455688999999999999977777777765 6789999999999          


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHH
Q 009130           86 RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILK  164 (543)
Q Consensus        86 ~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~  164 (543)
                           ||+++..+.++.+++.++     ...+++   ++.+++.|+++|++.+...+.....+.|++| ++|++++++..
T Consensus        77 -----~r~~l~~~~~~~~~~~~~-----~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  143 (406)
T PRK15402         77 -----RRPVMLAGVAFFILTCLA-----ILLAQS---IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMA  143 (406)
T ss_pred             -----ChHHHHHHHHHHHHHHHH-----HHHHcc---HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                 999999999999998888     555665   7888999999999999888888889999998 56888899998


Q ss_pred             HhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhh
Q 009130          165 GFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMEN  244 (543)
Q Consensus       165 ~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (543)
                      ....++..++|.+.+.+.+...|++.+....+..++..+...+                                     
T Consensus       144 ~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~-------------------------------------  186 (406)
T PRK15402        144 NVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR-------------------------------------  186 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence            8888999999998888876667776665444333222111000                                     


Q ss_pred             cccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHH
Q 009130          245 LLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQ  324 (543)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (543)
                                                ..++   +++   +              . +        ++. +.++.....++
T Consensus       187 --------------------------~~~~---~~~---~--------------~-~--------~~~-~~~~~~~~~~~  210 (406)
T PRK15402        187 --------------------------AMPE---TAG---R--------------V-G--------EKL-SLKELGRDYKL  210 (406)
T ss_pred             --------------------------hCCC---CCc---c--------------c-c--------ccc-cHHHHHHHHHH
Confidence                                      0000   000   0              0 0        000 00111233467


Q ss_pred             hhcchhHHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          325 AMCTGNFWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       325 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      .+++|.++...+..++..........+.|.+++ +.|+++.+.+.......++..+++++.|+++||+++|      +.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~------~~~  284 (406)
T PRK15402        211 VLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR------SLI  284 (406)
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHH
Confidence            889999998877766655444455556677764 4799998888888888888999999999999999654      455


Q ss_pred             HHHHHHHHHHHHHHhh------cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhh
Q 009130          404 VITLVAMSIGHIAIAS------GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVR  477 (543)
Q Consensus       404 ~~~~~~~~i~~~~~~~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~  477 (543)
                      ..+.+...++..++..      .+..+..+..++.|++.+...+........ .+++++|++.+..++...++. .+++.
T Consensus       285 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~-~~g~~  362 (406)
T PRK15402        285 RMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIF-TVGIE  362 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHH-HHHHH
Confidence            5565555555444331      122334556777888887766655554433 345899999999999998888 48888


Q ss_pred             hhhhhhhhcc
Q 009130          478 IIGRIYDRVA  487 (543)
Q Consensus       478 l~g~l~~~~g  487 (543)
                      +.+.+++..+
T Consensus       363 ~~~~l~~~~~  372 (406)
T PRK15402        363 LSKHAYLGGG  372 (406)
T ss_pred             HHHhcccCCc
Confidence            9999988776

>TIGR00896 CynX cyanate transporter

Probab=99.95  E-value=2e-26  Score=231.52  Aligned_cols=332  Identities=12%  Similarity=0.033  Sum_probs=240.8

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      ..+++...|.+.+|+|++.++.+++.+...++.. .+++.|++.||+|               +|+++.++.++.+++.+
T Consensus        16 ~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~~~~   80 (355)
T TIGR00896        16 LTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFG---------------EERSVAAGLLLIAAGIL   80 (355)
T ss_pred             cccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC---------------chHHHHHHHHHHHHHHH
Confidence            3467888999999999999999988777777775 7889999999999               99999999988888877


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCC--
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGN--  185 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~--  185 (543)
                      .     + .+++   .+.+++.|++.|+|.+...+.....+.+++|++|++++++...+.++|..+++.+...+.+..  
T Consensus        81 ~-----~-~~~~---~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~  151 (355)
T TIGR00896        81 I-----R-SAPG---TALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGG  151 (355)
T ss_pred             H-----H-Hhcc---HHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            6     5 4454   688889999999999988887888889999999999999999999999999988877765432  


Q ss_pred             chhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhh
Q 009130          186 PSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLA  265 (543)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (543)
                      .|++.+....+..++...                                                            . 
T Consensus       152 ~w~~~f~~~~~~~~~~~~------------------------------------------------------------~-  170 (355)
T TIGR00896       152 HWQQALAWWALPALLALL------------------------------------------------------------A-  170 (355)
T ss_pred             hHHHHHHHHHHHHHHHHH------------------------------------------------------------H-
Confidence            255444332221111000                                                            0 


Q ss_pred             cccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchh
Q 009130          266 SPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSG  345 (543)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~  345 (543)
                         .  .++.+++++                  + +        ++.     .+...++.+|+|.+|...+..++.....
T Consensus       171 ---~--~~~~~~~~~------------------~-~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T TIGR00896       171 ---W--IPQVRRRVA------------------A-N--------QTT-----TRLTPVRIWRSPLAWQVTVFFGLQSGLY  213 (355)
T ss_pred             ---H--hhhhccccC------------------C-C--------CCC-----CCCCCchhhcCHhHHHHHHHHHHHHHHH
Confidence               0  000000000                  0 0        000     0012245678888888777766666666


Q ss_pred             hhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchH
Q 009130          346 IATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNL  425 (543)
Q Consensus       346 ~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~  425 (543)
                      +....++|.+.++.|+|+.+.+...++..++.++++++.|++.||+++|     +..+..+.++.+++.+.+........
T Consensus       214 ~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (355)
T TIGR00896       214 YSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQ-----RGIVAVLAVLQLVGLCGLLFAPMHGL  288 (355)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-----hHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            6777889999998999999999999999999999999999999999532     24555555555555544442221122


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcC-CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccC
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFG-VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS  488 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~  488 (543)
                      ....++.|++.+..++...+.+.+..+ +++++.+.|+.+....++. .++|.+.|++.|..|+
T Consensus       289 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       289 WAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLA-ALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcc
Confidence            224567899998888777776665554 4667899999888888887 4889999999998874

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=3.6e-26  Score=240.91  Aligned_cols=387  Identities=11%  Similarity=0.066  Sum_probs=257.8

Q ss_pred             ccccccccHHHHhhcCCC---hhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYD---QSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFT  104 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s---~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~  104 (543)
                      .|..+...|.+.+|+|++   +.+.+++.+.+.++.. .+++.|+++||+|               ||+++.++.++.++
T Consensus       105 ~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~G---------------rr~~~~~~~~~~~i  169 (505)
T TIGR00898       105 EYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFG---------------RKKVLLLSTLVTAV  169 (505)
T ss_pred             EecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhcc---------------chHHHHHHHHHHHH
Confidence            345557788999999999   8888988888888876 6789999999999               99999999999999


Q ss_pred             HHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC
Q 009130          105 GYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN  183 (543)
Q Consensus       105 g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~  183 (543)
                      +.++     ++++++   ++.+++.|++.|++.+...+....++.|++| ++|+.+.++...+..+|.++++.++..+.+
T Consensus       170 ~~~~-----~~~~~~---~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  241 (505)
T TIGR00898       170 SGVL-----TAFSPN---YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD  241 (505)
T ss_pred             HHHH-----HHHccc---HHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9988     677776   8999999999999999999999999999998 679999999999999999998877655532


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 009130          184 GNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLL  263 (543)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (543)
                         |++.++...++.++..+..+++++.|.....+++...+...+.                                  
T Consensus       242 ---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~----------------------------------  284 (505)
T TIGR00898       242 ---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQ----------------------------------  284 (505)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHH----------------------------------
Confidence               8988888888777766665555443321000000000000000                                  


Q ss_pred             hhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhc
Q 009130          264 LASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMG  343 (543)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~  343 (543)
                               +.......        .    .+++..+.+.     +++.+ ++..+.+.++++++|.++...+...+.+.
T Consensus       285 ---------~~~~~~~~--------~----~~~~~~~~~~-----~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  337 (505)
T TIGR00898       285 ---------RIAKINGK--------K----LPAEVLSLSL-----EKDLS-SSKKQYSFLDLFRTPNLRKTTLCLMMLWF  337 (505)
T ss_pred             ---------HHHHHcCC--------C----CCHHHHhhhh-----hhhhh-hccCCCcHHHHhCChHHHHHHHHHHHHHH
Confidence                     00000000        0    0000000000     00000 00112356788889988777665544433


Q ss_pred             hhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc
Q 009130          344 SGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP  422 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~  422 (543)
                      ........++.+..+.+.+.   .....+.++..+++.++.+++.||++||      ..+.++.++.+++++++. .++.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~l~dr~grr------~~~~~~~~~~~~~~l~~~~~~~~  408 (505)
T TIGR00898       338 TTAFSYYGLVLDLGNLGGNI---YLDLFISGLVELPAKLITLLLIDRLGRR------YTMAASLLLAGVALLLLLFVPVD  408 (505)
T ss_pred             HHHHHHHHHhccccccCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHcCCC
Confidence            22222222233333445443   2333456677888999999999999654      666667766666665554 2222


Q ss_pred             --chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130          423 --GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF  500 (543)
Q Consensus       423 --~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~  500 (543)
                        ....+..++.+++.+..++..+.+..|.+|++.|+++.|+.+....+|+ +++|++.+ + +..+            +
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~-~i~p~i~~-~-~~~~------------~  473 (505)
T TIGR00898       409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGS-IISPFLVY-L-GEKW------------L  473 (505)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHH-HHHhHHHH-H-HHHH------------H
Confidence              2334445566677777788888999999999999999999999999998 48888887 4 3333            5


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchh
Q 009130          501 MLSFMIMAFVAFFGSLVAFLLFLRTRR  527 (543)
Q Consensus       501 ~~~f~~~~~~~~~~~i~~~~~~~~~~~  527 (543)
                      ..++.+.+++.+++.++.+++ +|+++
T Consensus       474 ~~~~~~~~~~~~~~~~~~~~l-pet~~  499 (505)
T TIGR00898       474 FLPLVLFGGLALLAGILTLFL-PETKG  499 (505)
T ss_pred             hhHHHHHHHHHHHHHHHHHcC-cCCCC
Confidence            567777777777776665544 44443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.95  E-value=2.1e-26  Score=231.89  Aligned_cols=341  Identities=11%  Similarity=-0.002  Sum_probs=249.4

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      ....|.+.+|++.++.+.+++.+...++.. .+++.|++.||+|               ||+++..+.++..++.++...
T Consensus        19 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g---------------~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900        19 QVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYD---------------RKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhc---------------hhHHHHHHHHHHHHHHHHHHH
Confidence            344577788899999999988777777775 7889999999999               999999999988888777433


Q ss_pred             HHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHH
Q 009130          112 SVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYI  190 (543)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~  190 (543)
                      .......+   ++.+++.|+++|++.+...+....++.|++| ++|+++.++...+.++|.++++.+++.+.+..+|++.
T Consensus        84 ~~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~  160 (365)
T TIGR00900        84 VALLGGLN---IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWA  160 (365)
T ss_pred             HHHcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            21111114   7889999999999999999999999999998 6899999999999999999999999888766667776


Q ss_pred             HHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccccc
Q 009130          191 LVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRV  270 (543)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (543)
                      +....+..++..+.....                                                              
T Consensus       161 ~~~~~~~~~~~~~~~~~~--------------------------------------------------------------  178 (365)
T TIGR00900       161 IWVDAVGFAISALLIVSV--------------------------------------------------------------  178 (365)
T ss_pred             HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Confidence            655544333222111111                                                              


Q ss_pred             ccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhh-
Q 009130          271 AITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATM-  349 (543)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~-  349 (543)
                        +.+ ++++   +            ++++.         +++..++.....++.+|+|.++...+..++......... 
T Consensus       179 --~~~-~~~~---~------------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (365)
T TIGR00900       179 --RIP-ELAA---S------------EIQAL---------SNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIV  231 (365)
T ss_pred             --ccc-cCCC---c------------ccccc---------chhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence              010 0000   0            00000         000011112334667889998888777666655555444 


Q ss_pred             hchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cC-cchHH
Q 009130          350 NNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GF-PGNLF  426 (543)
Q Consensus       350 ~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~-~~~~~  426 (543)
                      .+.|.+.++ +|.++.+.+.......++..+++++.+++.||+++|      ..+..+.++..+++..+.. ++ .+..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM------ALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh------HHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            677888876 799999999999999999999999999999998543      5555555555555554442 22 44456


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      +..++.|++.+...+...+++.|..|+++++++.|+.+....++.. ++|.+.|.+.|..|
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~g~~~~g~l~~~~g  365 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP-LGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence            6677889998888888889999999999999999999999999884 88999999988753

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.95  E-value=2.5e-25  Score=226.07  Aligned_cols=330  Identities=14%  Similarity=0.055  Sum_probs=235.8

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      ..+....|.+.+|+|.++.+.+++.+.+.++.. .+++.|++.||+|               ||+++..+.++.+++.++
T Consensus        22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g---------------~r~~~~~~~~~~~~~~~~   86 (385)
T TIGR00710        22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYG---------------RRPVLLLGLFIFALSSLG   86 (385)
T ss_pred             HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcC---------------ChHHHHHHHHHHHHHHHH
Confidence            344556799999999999999988777777775 6889999999999               999999999999999888


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           .+.+++   ++.+++.|++.|++.+...+.....+.|++| ++|++++++......+|..+++.+.+.+.+..+|
T Consensus        87 -----~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  158 (385)
T TIGR00710        87 -----LALSNN---IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSW  158 (385)
T ss_pred             -----HHHHcc---HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence                 555665   7889999999999999999999999999998 5799999999999999999999998887766667


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ++.+....+..++..+...+                                                            
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------  178 (385)
T TIGR00710       159 HAIFAFLSLAGILLSALIFF------------------------------------------------------------  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------------------------------------------------------------
Confidence            66555433322221111000                                                            


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                         ..++++++++                  +             ++.+......++.++++.++...+...+.....+.
T Consensus       179 ---~~~~~~~~~~------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (385)
T TIGR00710       179 ---ILPETLPYEA------------------R-------------IQISTYFETFLLLLKSKMFWGYALIYGASFGGFFA  224 (385)
T ss_pred             ---hCCCCCCCcc------------------c-------------CCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence               0001000000                  0             00011123346778899998877776665555566


Q ss_pred             hhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh---h-c-C
Q 009130          348 TMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA---S-G-F  421 (543)
Q Consensus       348 ~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~-~-~  421 (543)
                      ...+.|.+.+ +.|+++.+.+.+.+...++..+++++.|++.||+++|      +.+..+.++..++..++.   . . +
T Consensus       225 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (385)
T TIGR00710       225 FFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK------SLLRMGLILFAVSAVLLEITAILGLG  298 (385)
T ss_pred             HHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6667787775 5799999999999999999999999999999999654      444445444444433332   1 1 1


Q ss_pred             c-chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 009130          422 P-GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYD  484 (543)
Q Consensus       422 ~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~  484 (543)
                      . ...+...++.|++.+...+.......|..| ++++++.++.+.....++.+.+| +.+.+.+
T Consensus       299 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~-~~~~~~~  360 (385)
T TIGR00710       299 SWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGY-LVSLIHG  360 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHH-HHHhccc
Confidence            1 223344566788888888888888888876 67899999988776655545555 4554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11043 putative transporter; Provisional

Probab=99.95  E-value=2.8e-25  Score=227.11  Aligned_cols=329  Identities=11%  Similarity=0.040  Sum_probs=232.1

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      .+.+....|.+++++|.++++.+++.+.+.++.. .+++.|++.||+|               ||+++..+.++..++.+
T Consensus        22 ~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~~~~   86 (401)
T PRK11043         22 TDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYG---------------RKPVLLAGLSLFALGSL   86 (401)
T ss_pred             HHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcC---------------CcHHHHHHHHHHHHHHH
Confidence            3444555678899999999999988777777765 7889999999999               99999999999998888


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCc
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP  186 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~  186 (543)
                      +     +.++++   ++.+++.|+++|++.+...+.....+.|++| ++++++.+......+++..++|.+++.+.+..+
T Consensus        87 ~-----~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g  158 (401)
T PRK11043         87 G-----MLWVES---AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG  158 (401)
T ss_pred             H-----HHHhcC---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8     566665   7889999999999988887777788899998 468888899888889999999999988877777


Q ss_pred             hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          187 STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      |++.+....+..++..+...+                                                           
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  179 (401)
T PRK11043        159 WQAIFATLFAITLLLILPTLR-----------------------------------------------------------  179 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------------
Confidence            777665544332221111100                                                           


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                           .++++++ +                              ++   ++...+.++.++++.+|...+...+.....+
T Consensus       180 -----~~~~~~~-~------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (401)
T PRK11043        180 -----LKPSKKA-R------------------------------KQ---SQDALTFKQLLKSKTYLGNVLIFAACSAAFF  220 (401)
T ss_pred             -----cCCCCCc-c------------------------------cc---chHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence                 0010000 0                              00   0011245677888888876665555555555


Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH---HHHHHHHHHhh---c
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV---AMSIGHIAIAS---G  420 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~---~~~i~~~~~~~---~  420 (543)
                      .+..+.|.+.++.|+++.+.+.......++..+|+++.+++.||+++|      +......+   +..+.+.....   .
T Consensus       221 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (401)
T PRK11043        221 AWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE------QLLPWLLVLFAVSVIAIWLASLLSHP  294 (401)
T ss_pred             HHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            666778888888899999999888888888899999999999998654      22222222   22222222221   2


Q ss_pred             CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 009130          421 FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV  486 (543)
Q Consensus       421 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~  486 (543)
                      +.....+...+.|++.+..++.......+..| +++|++.|+.+.....++. .++.+.|.+.|..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~-~~~~~~g~l~~~~  358 (401)
T PRK11043        295 SLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCF-LASLLVSALISTP  358 (401)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHH-HHHHHHHHccCCC
Confidence            22223344556677777777777766667665 6899999999887776664 6667788887753

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=2.8e-25  Score=227.65  Aligned_cols=353  Identities=11%  Similarity=0.018  Sum_probs=240.5

Q ss_pred             ccccccHHHHhhcCCChhhH-----HHHHHHhhhcc-cccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHH
Q 009130           31 TFSIYSSTLKSTQNYDQSTL-----ERVAVFKDMGG-SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFT  104 (543)
Q Consensus        31 ~~~~~~~~l~~~~~~s~~~~-----~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~  104 (543)
                      .+..+.|.+.+|+|++..+.     +++.+...+.. ..+++.|++.||+|               ||+++..+.++.++
T Consensus        32 ~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~   96 (408)
T PRK09874         32 LVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKG---------------RKIMLLRSALGMGI   96 (408)
T ss_pred             HhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC---------------cHHHHHHHHHHHHH
Confidence            34566788888999987653     54445555554 46889999999998               99999999999888


Q ss_pred             HHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC
Q 009130          105 GYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN  183 (543)
Q Consensus       105 g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~  183 (543)
                      +.++     ....++   ++.+++.|++.|++.+. .+.....+.+++| ++|+++.++...+..+|.++++++.+.+.+
T Consensus        97 ~~~~-----~~~~~~---~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  167 (408)
T PRK09874         97 VMVL-----MGLAQN---IWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD  167 (408)
T ss_pred             HHHH-----HHHHhh---HHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8887     455555   78899999999998654 5666777889998 689999999999999999999999888876


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 009130          184 GNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLL  263 (543)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (543)
                      ...|++.+....+..++..+...+                                                        
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------  191 (408)
T PRK09874        168 SYGLRPVFFITASVLFLCFLVTLF--------------------------------------------------------  191 (408)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------------
Confidence            666766655444332221111000                                                        


Q ss_pred             hhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHH-HHhhh
Q 009130          264 LASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIA-TLCGM  342 (543)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~-~~~~~  342 (543)
                             ..++++++.+                  +           +++   .......+.+++++++...+. .+...
T Consensus       192 -------~~~~~~~~~~------------------~-----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (408)
T PRK09874        192 -------CIRENFQPVS------------------K-----------KEM---LHMREVVTSLKNPKLVLSLFVTTLIIQ  232 (408)
T ss_pred             -------HhccCccccc------------------c-----------hhh---hHHHHHHHhCcCCchHHHHHHHHHHHH
Confidence                   0011100000                  0           000   000112345667766543322 22222


Q ss_pred             chhhhhhhchHHHHHhhCCCchh----hHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 009130          343 GSGIATMNNIAQVGESLHYSTTE----INSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA  418 (543)
Q Consensus       343 ~~~~~~~~~~~~~~~~~g~s~~~----a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~  418 (543)
                      ........+.+.+..+.+.+..+    .+.+.++.+++..++++..|+++||+++|      +.+..+.+...++.+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~------~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        233 VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE------KILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------hhHHHHHHHHHHHHHHHH
Confidence            22223344566666665333222    34555677788889999999999999654      455556555555554444


Q ss_pred             -hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcccccc
Q 009130          419 -SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGT  497 (543)
Q Consensus       419 -~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~  497 (543)
                       .++....++..++.|++.+...+...+.+.+..+++++|+.+|+.+....+|. .++|.+.|.+.|..|          
T Consensus       307 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~gp~~~G~l~~~~g----------  375 (408)
T PRK09874        307 FVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGN-VTGPLMGAAISANYG----------  375 (408)
T ss_pred             HhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHH-HhhHHHHHHHHhhcc----------
Confidence             34445556667788999888888888888888999999999999988888888 489999999998876          


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH
Q 009130          498 HCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       498 ~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                        |+..|++.+++.+++.++.+..
T Consensus       376 --~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        376 --FRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHH
Confidence              9999999998888877665443

>PRK10133 L-fucose transporter; Provisional

Probab=99.95  E-value=5.4e-25  Score=226.32  Aligned_cols=360  Identities=12%  Similarity=0.077  Sum_probs=241.0

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      ....+.+.|.+++++|+++.+.+++.+.+.+++. .+++.|++.||+|               ||+++..+.++++++.+
T Consensus        42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G---------------~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS---------------YKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------cHHHHHHHHHHHHHHHH
Confidence            3556778899999999999999977777777776 7889999999999               99999999999999998


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCC-CCcchhHHHHHhhhhhHHHHHHHHHHhcC-C-
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGH-YSGTIVGILKGFVGLSGAVLTQVYKTVCN-G-  184 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~~gi~~~~~~lg~~i~~~l~~~l~~-~-  184 (543)
                      ++..  +..+++   ++.+++.|+++|+|.|...+.....+.++.|+ +|...+++.+..+++|..+++.++..+.. . 
T Consensus       107 l~~~--~~~a~~---~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        107 LFWP--AAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHH--HHhcCC---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7321  234555   89999999999999999999999999988775 45568999999999999999888765431 0 


Q ss_pred             ----------------CchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccc
Q 009130          185 ----------------NPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTF  248 (543)
Q Consensus       185 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (543)
                                      ..|++.+..                          +++..+..+.                   
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~--------------------------~w~~~f~~~~-------------------  216 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVL--------------------------SVQTPYMIIV-------------------  216 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHH--------------------------HHHHHHHHHH-------------------
Confidence                            011111100                          0000000000                   


Q ss_pred             hhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcc
Q 009130          249 SLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCT  328 (543)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (543)
                               .+..++..+..   .++.|+.++                ++.++        ++   ..+...+.++++++
T Consensus       217 ---------~v~~~~~~~~~---~~~~p~~~~----------------~~~~~--------~~---~~~~~~~~~~ll~~  257 (438)
T PRK10133        217 ---------AIVLLVALLIM---LTKFPALQS----------------DNHSD--------AK---QGSFSASLSRLARI  257 (438)
T ss_pred             ---------HHHHHHHHHHH---HhcCCCCCc----------------ccccc--------cc---ccchhhhHHHHHhC
Confidence                     00000110100   111111000                00000        00   00111234577889


Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHH-H-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVG-E-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT  406 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~-~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~  406 (543)
                      |.++...+..++..........+.+.++ + ..|+++.+++..+..+.++.++|+++.|++.||+++|      +++..+
T Consensus       258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~------~~l~~~  331 (438)
T PRK10133        258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH------KVLAAY  331 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHH
Confidence            9988777666666666565666777664 4 4699999999999999999999999999999999654      455555


Q ss_pred             HHHHHHHHHHHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 009130          407 LVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV  486 (543)
Q Consensus       407 ~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~  486 (543)
                      .++.++.+++....+.........+.|++.+..+|...+...+.+|+ +.+++.++..+ ..+|+. ++|.+.|.+.|..
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~-~~~~i~G~l~~~~  408 (438)
T PRK10133        332 ALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGG-IVTPVMGFVSDAA  408 (438)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-Hhccch-HHHHHHHHHHHhc
Confidence            55554444433322222334556788999999999999999998874 56777777764 335553 6677999999876


Q ss_pred             cCCCCccccccchhHHHHHHHHHHHH
Q 009130          487 ASGEDHTCYGTHCFMLSFMIMAFVAF  512 (543)
Q Consensus       487 g~~~~~~~~~~~~~~~~f~~~~~~~~  512 (543)
                      |+           .+.+|++...+.+
T Consensus       409 g~-----------~~~~~~v~~~~~~  423 (438)
T PRK10133        409 GN-----------IPTAELIPALCFA  423 (438)
T ss_pred             cc-----------hHHHHHHHHHHHH
Confidence            51           5677765544333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.94  E-value=1e-24  Score=222.35  Aligned_cols=375  Identities=11%  Similarity=0.020  Sum_probs=244.1

Q ss_pred             HcCCcccc-ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHH
Q 009130           25 SVGTTYTF-SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILC  102 (543)
Q Consensus        25 ~~g~~~~~-~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~  102 (543)
                      .+|..+.. +++.|.+++++|+++.|.+++.+...+++. .+++.|++.||+|               +|+++.++.+++
T Consensus        14 ~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G---------------~r~~~~~g~~l~   78 (410)
T TIGR00885        14 LWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLS---------------YKAGILLGLFLY   78 (410)
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------chHHHHHHHHHH
Confidence            34554444 578899999999999999988777777776 7889999999999               999999999999


Q ss_pred             HHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHh
Q 009130          103 FTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTV  181 (543)
Q Consensus       103 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l  181 (543)
                      +++.+++..  ....++   ++.+++.|++.|+|.|...+.....+.++.| ++|++.+++....+++|..+++.+...+
T Consensus        79 ~~g~~l~~~--~~~~~~---~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        79 ALGAFLFWP--AAEIMN---YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHHHH--HHhhcc---HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888432  122233   8899999999999999999999999999998 5799999999999999999999888776


Q ss_pred             cCCCchh-HHHHHHHHHHHHHHHHHhheeccCCC-----CcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHH
Q 009130          182 CNGNPST-YILVLALLPTLVSLLFMSHVRIYGTN-----SVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARII  255 (543)
Q Consensus       182 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (543)
                      ....... .....              ....+..     ..+..+++..+..++.                         
T Consensus       154 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~w~~~fl~~a~-------------------------  194 (410)
T TIGR00885       154 ILSNLPHQSQDVL--------------DKLSPEELSAIKHSDLASVQTPYMIIGA-------------------------  194 (410)
T ss_pred             HhcCCccchhhhh--------------hhcCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            4211000 00000              0000000     0000111111111111                         


Q ss_pred             HHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHH
Q 009130          256 TFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLC  335 (543)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  335 (543)
                          ..++.....  ...+.|+. +   +               +++       ++.    +...+.++.+|+|.++...
T Consensus       195 ----~~~~~~~~~--~~~~~p~~-~---~---------------~~~-------~~~----~~~~~~~~~~~~~~~~~~~  238 (410)
T TIGR00885       195 ----VVLAVALLI--MLTKMPAL-N---H---------------SDA-------KQI----SFSASLSRLARIRHYREGV  238 (410)
T ss_pred             ----HHHHHHHHH--HHhcCCCC-C---c---------------ccc-------ccc----cchhhHHHHHhChhHHHHH
Confidence                000100000  00111110 0   0               000       000    0011234677889998888


Q ss_pred             HHHHhhhchhhhhhhchHHHHHhh--CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130          336 IATLCGMGSGIATMNNIAQVGESL--HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG  413 (543)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~  413 (543)
                      +..++..+.......+++.+.++.  +.+...++...+.+.....+||++++++.||+++|      +.+.+..+..++.
T Consensus       239 l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~------~~l~i~~~~~~~~  312 (410)
T TIGR00885       239 IAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH------KVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHH
Confidence            888887777767777888888765  44445556667777788899999999999999543      4565666666666


Q ss_pred             HHHHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcc
Q 009130          414 HIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHT  493 (543)
Q Consensus       414 ~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~  493 (543)
                      +++....+.....+..++.|++.+..+|...+...+..+++....+.++....  +|+. +.|++.|.+.|..+...   
T Consensus       313 ~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga-~~p~l~G~~~d~~~~~~---  386 (410)
T TIGR00885       313 CLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGG-IVPPLQGFIIDMKEIAA---  386 (410)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccc-hHHHHHHHHHHHhcccc---
Confidence            55554433334456677889999999999999999999866654455544433  7774 77889999999652100   


Q ss_pred             ccccchhHHHHHHHHH
Q 009130          494 CYGTHCFMLSFMIMAF  509 (543)
Q Consensus       494 ~~~~~~~~~~f~~~~~  509 (543)
                         ..+++.+|++-..
T Consensus       387 ---~~~~~~~~~~~~~  399 (410)
T TIGR00885       387 ---APAVNTSFILPLL  399 (410)
T ss_pred             ---cCccchHHHHHHH
Confidence               0027777776544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.6e-24  Score=202.40  Aligned_cols=354  Identities=12%  Similarity=0.046  Sum_probs=269.0

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      ..+.+++.+++.+|+|.|.++.+.+++.-.+... ++++..++..|+|               .++.+..++++.++|..
T Consensus        28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g---------------~er~l~~~Llli~~G~~   92 (395)
T COG2807          28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFG---------------EERSLFLALLLIAAGIL   92 (395)
T ss_pred             hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---------------hHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999988887777664 8999999999999               99999999999999999


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCC-c
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGN-P  186 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~-~  186 (543)
                      +     -... +   .+.++..-.+.|.|.+..+...+..+.++||+|-+..+|++....++|+++++.+.-.+.+.. +
T Consensus        93 i-----R~~~-~---~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~g  163 (395)
T COG2807          93 I-----RSLG-G---LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGG  163 (395)
T ss_pred             H-----Hhcc-c---HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence            9     6654 3   688888999999999999999999999999999999999999999999999987766554433 4


Q ss_pred             hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          187 STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      |+.-+..=.+|..++++..                                                             
T Consensus       164 W~~aL~~WAl~allAl~~W-------------------------------------------------------------  182 (395)
T COG2807         164 WRGALGFWALLALLALLIW-------------------------------------------------------------  182 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence            5544433333332221110                                                             


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                       .     ++. .++..                           .+   .+.+..+..+++|+|.-|.+.+.+.+.+..+|
T Consensus       183 -l-----Pq~-~r~~~---------------------------~~---~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y  225 (395)
T COG2807         183 -L-----PQA-LREQA---------------------------AS---IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYY  225 (395)
T ss_pred             -h-----hhc-ccccc---------------------------cc---cccccccccccccCchhHHHHHHHHhhHHHHH
Confidence             0     000 00000                           00   00011122567899999999999999999999


Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLF  426 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~  426 (543)
                      ..+.|+|.++.|.|+|.++++.+.++..+.+....+....+.+|..     ++++......+++.++.+.+...+....+
T Consensus       226 ~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~-----n~r~~~~~~~~~~l~G~~G~~~~P~~~~~  300 (395)
T COG2807         226 IVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSK-----NQRPLVVLALLLMLVGLVGLLLAPGQLPI  300 (395)
T ss_pred             HHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            9999999999999999999999999999999999999999999853     44566666777777776655432222222


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCC-cchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGV-RHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      ...++.|++.|+.++..-..+.+...+ ++.+.-.|+..-.+.+-.. +||++.|++.|.+|+           |+..++
T Consensus       301 lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa-~GP~l~G~lhDa~gs-----------w~~~~~  368 (395)
T COG2807         301 LWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAA-FGPWLFGFLHDATGS-----------WSAPLV  368 (395)
T ss_pred             HHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHh-hhhhhHhHHHHhcCC-----------hHHHHH
Confidence            236899999999999888887777654 4445666666666665553 789999999999994           999988


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009130          506 IMAFVAFFGSLVAFLL  521 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~~  521 (543)
                      ..+...++..+..+..
T Consensus       369 ~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         369 LLALATLLMLIFGLRA  384 (395)
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            8877666666554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.94  E-value=1.3e-24  Score=219.94  Aligned_cols=348  Identities=11%  Similarity=0.026  Sum_probs=237.3

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhcc-cccchhhHhhhhcccccccccccccccCCchHHHHH-HHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGG-SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFT-GAILCFTGYFLVW  110 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~-g~~~~~~g~~~~~  110 (543)
                      +.+.+.+++++|.|+.+.+++.+...+.. ..+++.|.+.||+|               ||+.++. +.++..++.++  
T Consensus        18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g---------------~r~~~~~~~~~~~~~~~~~--   80 (375)
T TIGR00899        18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQG---------------DRKGLILFCCLLAALACLL--   80 (375)
T ss_pred             hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------CchHHHHHHHHHHHHHHHH--
Confidence            44445678999999999997766665544 47889999999998               8877554 55555566666  


Q ss_pred             HHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCC-CCcch--hHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          111 ASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGH-YSGTI--VGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~rg~~--~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                         ++.+++   ++.+++.|++.|.+.+...+.......++.|+ +|+.+  .++...+.++|.++++++++.+.+..+|
T Consensus        81 ---~~~~~~---~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~  154 (375)
T TIGR00899        81 ---FAWNRN---YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGF  154 (375)
T ss_pred             ---HHhcch---HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhccc
Confidence               556665   78888889999888777777777777888873 45543  5788888899999999999988877778


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ++.++...+..++..+...+.                                                           
T Consensus       155 ~~~f~~~~~~~~~~~~~~~~~-----------------------------------------------------------  175 (375)
T TIGR00899       155 TVMFLTAALAFVLCGVLVWLF-----------------------------------------------------------  175 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-----------------------------------------------------------
Confidence            877776655433322111110                                                           


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                          .++++++++                   ++         +.      ..+.++.++++.++...+..++.......
T Consensus       176 ----~~~~~~~~~-------------------~~---------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (375)
T TIGR00899       176 ----LPSYPRGAP-------------------GA---------LT------RLEVRGLLASRDTRLLFVACTLMWGCNIL  217 (375)
T ss_pred             ----CCCcccCcc-------------------cc---------cC------cchhhhhhcCcchHHHHHHHHHHHHHHHH
Confidence                011100000                   00         00      00112345666666655554444433334


Q ss_pred             hhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchH
Q 009130          348 TMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNL  425 (543)
Q Consensus       348 ~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~  425 (543)
                      ...+.|.+.+ +.|.++.+.+...+...+...+++++.|++.||+++|      +.+.++.+...+.+..+. .++.+..
T Consensus       218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (375)
T TIGR00899       218 YIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR------RLMLLAALAGVAFYTGLAADNSLWAL  291 (375)
T ss_pred             HHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677764 5799999999888888888888999999999999654      444445444444433333 2334444


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      ++..++.|++.+...+....++.|..|+ +++++.|+.+....+|. .++|.+.|.+.|..|            |+..|+
T Consensus       292 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~-~~g~~~~g~~~~~~g------------~~~~~~  357 (375)
T TIGR00899       292 LMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGW-IIAGSVGGILAERWS------------YHAVYW  357 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc------------chhHHH
Confidence            5556677888887777777888888875 56799999988888888 489999999999876            899999


Q ss_pred             HHHHHHHHHHHHHHH
Q 009130          506 IMAFVAFFGSLVAFL  520 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~  520 (543)
                      +.+++.+++.++..+
T Consensus       358 ~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       358 FAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHhe
Confidence            888877777766443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.94  E-value=7e-25  Score=202.90  Aligned_cols=243  Identities=46%  Similarity=0.800  Sum_probs=220.7

Q ss_pred             hHHHHHHHHHHHHHcCCccccccccHHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhcccccccccccccccCCc
Q 009130           12 KWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGP   91 (543)
Q Consensus        12 ~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~   91 (543)
                      ||..++++.+++++.|+.|.|+.+.|++++.+|+|++|.+.++.+..+|..++++.|.+.|++|               +
T Consensus         1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~g---------------p   65 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFG---------------P   65 (250)
T ss_pred             ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcc---------------h
Confidence            7999999999999999999999999999999999999999999999999989999999999999               9


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhH
Q 009130           92 WVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSG  171 (543)
Q Consensus        92 r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~  171 (543)
                      |.++.+|.+...+|+.+.++...+..+++ ++|+++++.++.|.|.+..++.+.....++||++||++.|+..+..++++
T Consensus        66 ~~~l~iG~~~~~~GY~~~~l~~~~~i~~~-~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSa  144 (250)
T PF06813_consen   66 WVVLLIGAVLGFVGYGLLWLAVSGRIPSL-PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSA  144 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccCcc-chHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHH
Confidence            99999999999999999999888876644 58999999999999999888888888899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCC-----CcccchhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 009130          172 AVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTN-----SVDDKKHLNAFSAVAMTLAAYFMVITVMENLL  246 (543)
Q Consensus       172 ~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (543)
                      ++...+...++.++...+.++++..|..++++.++++++.|.+     ++++++.+..+..+.+.++.|++..++.++..
T Consensus       145 ai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~  224 (250)
T PF06813_consen  145 AIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFV  224 (250)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999988642     23445566677888888999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHhhccccc
Q 009130          247 TFSLWARIITFIILLLLLASPLRV  270 (543)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~  270 (543)
                      +.+++.+.....++++++..|+.+
T Consensus       225 ~~s~~~~~~~~~il~llL~~Pl~i  248 (250)
T PF06813_consen  225 KLSRAARVIFAVILLLLLLLPLAI  248 (250)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhc
Confidence            999999988888877777777653

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.94  E-value=2.1e-24  Score=225.14  Aligned_cols=363  Identities=10%  Similarity=0.007  Sum_probs=241.6

Q ss_pred             cccccHHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHH-HHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVV-HFTGAILCFTGYFLVW  110 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~-~~~g~~~~~~g~~~~~  110 (543)
                      .+...|...++.|.+.++++.++.... .....+++|++.||+.          .+|+|||+. +..+.++.+++..+  
T Consensus        31 ~~~~l~~~l~~~g~~~~~ig~~~~~~~-~~~~~~l~gpl~Dr~~----------~~~~Grrr~~ll~~~i~~~~~~~~--   97 (491)
T PRK11010         31 TSGTLQAWMTVENIDLKTIGFFSLVGQ-AYVFKFLWSPLMDRYT----------PPFLGRRRGWLLATQLLLLVAIAA--   97 (491)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHccc----------ccCCCCchHHHHHHHHHHHHHHHH--
Confidence            444567778888999999996533322 2357889999999994          223337764 66777777777766  


Q ss_pred             HHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC-CCchh
Q 009130          111 ASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN-GNPST  188 (543)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~-~~~~~  188 (543)
                         .++.....+++.+.+.+++.|++.+...++..++..||+| +||+++.++...+..+|.++++.+...+.+ ..+|+
T Consensus        98 ---~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr  174 (491)
T PRK11010         98 ---MGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ  174 (491)
T ss_pred             ---HHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence               3333211137788889999999999988988899999998 789999999999999999999998888876 35787


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      ..+....+...+..+...+                                                             
T Consensus       175 ~~f~i~a~l~ll~~l~~~~-------------------------------------------------------------  193 (491)
T PRK11010        175 GMYWLMAALLIPCIIATLL-------------------------------------------------------------  193 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------------------------------------------------------------
Confidence            7776554433222111111                                                             


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                         .++++ +++   +              .+  +       +.  ++....+.++.++++.+|...+..++........
T Consensus       194 ---~~e~~-~~~---~--------------~~--~-------~~--~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~  241 (491)
T PRK11010        194 ---APEPT-DTI---P--------------VP--K-------TL--EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFA  241 (491)
T ss_pred             ---cCCCc-ccc---c--------------cc--c-------ch--hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence               11110 000   0              00  0       00  0001123456777777776665554444333344


Q ss_pred             hhchHHHH-HhhCCCchhhHHHHH-HHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHH---HHhhc--C
Q 009130          349 MNNIAQVG-ESLHYSTTEINSLIS-LWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHI---AIASG--F  421 (543)
Q Consensus       349 ~~~~~~~~-~~~g~s~~~a~~~~~-~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~---~~~~~--~  421 (543)
                      ..+.++++ ++.|+|+++.+.... ...++.++|.+++|+++||+++|      +.+.++.++..+..+   .+...  +
T Consensus       242 ~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~------~~l~i~~~l~~l~~l~~~~l~~~~~~  315 (491)
T PRK11010        242 MSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF------RALMIFGILQGVSNAGYWLLSITDKN  315 (491)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45566665 457999999999875 55679999999999999999754      333333333333222   22222  2


Q ss_pred             cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhH
Q 009130          422 PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFM  501 (543)
Q Consensus       422 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~  501 (543)
                      ...+....++..++.|...+...++..+..+++..++.+|+.+....+|.. +.+.+.|.+.|..|            |+
T Consensus       316 ~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~-~~~~~~G~l~~~~G------------~~  382 (491)
T PRK11010        316 LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRV-YVGPVAGWFVEAHG------------WP  382 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC------------hH
Confidence            222233344444445555556677888899988999999999988899985 55668999999887            99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 009130          502 LSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       502 ~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      ..|.+.+++.+.+.++...++
T Consensus       383 ~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        383 TFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888877766654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.94  E-value=6.2e-24  Score=217.29  Aligned_cols=333  Identities=11%  Similarity=-0.048  Sum_probs=223.8

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      ...+....|.+.++++.+.++.++..+.+.+++. .+++.|++.||+|               ||+++..+.++++++.+
T Consensus        32 ~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~G---------------rr~~l~~~~~~~~~~~~   96 (413)
T PRK15403         32 TDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIG---------------RRPVLITGALIFTLACA   96 (413)
T ss_pred             HHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcC---------------chHHHHHHHHHHHHHHH
Confidence            3455666788999999999999966666666665 7889999999999               99999999999999998


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCc
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP  186 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~  186 (543)
                      +     +..+++   ++.+++.|+++|++.+...+....++.|++| ++|++++++...+..+|..+++.+++.+.+..+
T Consensus        97 ~-----~~~a~~---~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g  168 (413)
T PRK15403         97 A-----TLFTTS---MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH  168 (413)
T ss_pred             H-----HHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8     777776   7899999999999998766767778899998 578999999999999999999999888876667


Q ss_pred             hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          187 STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      |++.+....+..++.++...+                                                           
T Consensus       169 w~~~f~~~~~~~~i~~~~~~~-----------------------------------------------------------  189 (413)
T PRK15403        169 WKVLFAIIAVMGLIAFVGLLL-----------------------------------------------------------  189 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------------
Confidence            888776655543332211110                                                           


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                          ..++++++ +                + .           +. ..+.....+++.+|||.+|...+..++.....+
T Consensus       190 ----~lp~~~~~-~----------------~-~-----------~~-~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~  235 (413)
T PRK15403        190 ----AMPETVKR-G----------------A-V-----------PF-SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMM  235 (413)
T ss_pred             ----hCCCCccc-c----------------C-C-----------CC-ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence                00010000 0                0 0           00 001112345678899999998888777766666


Q ss_pred             hhhhchHHHHHhh-CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-----hc
Q 009130          347 ATMNNIAQVGESL-HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-----SG  420 (543)
Q Consensus       347 ~~~~~~~~~~~~~-g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-----~~  420 (543)
                      .+....|.++++. |+++.+.++.......+..++..+.+.+.++..+     ++. .........++..++.     ..
T Consensus       236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~-----~~~-~~~~~~~~~ig~~l~~~~~~~~~  309 (413)
T PRK15403        236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTE-----PRF-IWRAVPIQLVGLALLIVGNLLWP  309 (413)
T ss_pred             HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----hhH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence            7777788888775 9999999998877777777777766665433221     111 1111111122211111     12


Q ss_pred             Ccc-hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 009130          421 FPG-NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDR  485 (543)
Q Consensus       421 ~~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~  485 (543)
                      +.. ..++..++.++|.+...+......-.. ....+|++.++.+.....+.. .++...+++.+.
T Consensus       310 ~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~-~~~~~~g~~~~~  373 (413)
T PRK15403        310 HVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMA-VSVEIGRWLWFN  373 (413)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence            222 235566677777777666555322211 122468888888777666653 566677777665

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.94  E-value=1.7e-24  Score=216.54  Aligned_cols=330  Identities=16%  Similarity=0.183  Sum_probs=267.8

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      .+..+...|.+.+++|.++.+.+++.+...++.. ..++.|++.||+|               ||+.+..+.++..++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g---------------~r~~~~~~~~~~~~~~~   79 (352)
T cd06174          15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFG---------------RRRVLLLGLLLFALGSL   79 (352)
T ss_pred             hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC---------------CchhhHHHHHHHHHHHH
Confidence            3456677788999999999999977777777665 7889999999999               99999999999999998


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCc
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP  186 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~  186 (543)
                      +     ....++   ++.+++.|++.|++.+...+....++.|++| ++|++++++.....++|..+++.+.+.+.+...
T Consensus        80 ~-----~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  151 (352)
T cd06174          80 L-----LAFASS---LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG  151 (352)
T ss_pred             H-----HHHhcc---HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8     555555   7889999999999999999999999999998 589999999999999999999999888876555


Q ss_pred             hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc
Q 009130          187 STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLAS  266 (543)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (543)
                      |++.+....+..++..+...+                                                           
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  172 (352)
T cd06174         152 WRWLFLILAILGLLLALLLLF-----------------------------------------------------------  172 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------------
Confidence            666555444332221110000                                                           


Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          267 PLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                                                                           .  .     |.++...+..++......
T Consensus       173 -----------------------------------------------------~--~-----~~~~~~~~~~~~~~~~~~  192 (352)
T cd06174         173 -----------------------------------------------------L--L-----RLLLLLALAFFLLSFGYY  192 (352)
T ss_pred             -----------------------------------------------------H--H-----HHHHHHHHHHHHHHhHHH
Confidence                                                                 0  0     556667776666666667


Q ss_pred             hhhhchHHHHHhh-CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchH-HHHHHHHHHHHHHHHHh-hcCcc
Q 009130          347 ATMNNIAQVGESL-HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPI-FMVITLVAMSIGHIAIA-SGFPG  423 (543)
Q Consensus       347 ~~~~~~~~~~~~~-g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~-~~~~~~~~~~i~~~~~~-~~~~~  423 (543)
                      ....+.|.+.++. |.++.+.+...+...++..+++++.+++.||+++|      + .+..+.++..++.+.+. ..+..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~  266 (352)
T cd06174         193 GLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR------RLLLLIGLLLAALGLLLLALAPSLA  266 (352)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHhccHH
Confidence            7778888888776 99999999999999999999999999999999654      4 66677777777766665 34455


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHH
Q 009130          424 NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLS  503 (543)
Q Consensus       424 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~  503 (543)
                      ..++..++.|++.+...+....++.|..|++++++..|+.+....++.. ++|.+.|.+.|..+            |+..
T Consensus       267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~g~l~~~~~------------~~~~  333 (352)
T cd06174         267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGA-LGPLLAGLLLDTGG------------YGGV  333 (352)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccC------------cchH
Confidence            5677788889999999999999999999999999999999999999984 88899999998766            8899


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009130          504 FMIMAFVAFFGSLVAF  519 (543)
Q Consensus       504 f~~~~~~~~~~~i~~~  519 (543)
                      +++.+++.+++.++.+
T Consensus       334 ~~~~~~~~~i~~i~~~  349 (352)
T cd06174         334 FLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHhe
Confidence            9998888887776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.94  E-value=5.2e-26  Score=227.97  Aligned_cols=329  Identities=16%  Similarity=0.169  Sum_probs=233.8

Q ss_pred             cccccH-HHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSS-TLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLV  109 (543)
Q Consensus        32 ~~~~~~-~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~  109 (543)
                      .....| .+.+++|.++.+.+++.+...++.. .+++.|.+.||+|               ||+++.++.++.+++.++ 
T Consensus        15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g---------------~r~~l~~~~~~~~~~~~~-   78 (352)
T PF07690_consen   15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFG---------------RRRVLIIGLLLFALGSLL-   78 (352)
T ss_dssp             HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS----------------HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------CeeeEeehhhhhhhHHHH-
Confidence            455556 8899999999999987777777665 7889999999999               999999999999999555 


Q ss_pred             HHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          110 WASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                          ..++++   ++.+++.|++.|++.+...+....++.|++| ++|++++++...+.++|.++++.+++.+.+..+|+
T Consensus        79 ----~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~  151 (352)
T PF07690_consen   79 ----LAFASN---FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWR  151 (352)
T ss_dssp             ----HHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHC
T ss_pred             ----hhhhhh---HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccc
Confidence                333354   6788999999999999999999999999998 58999999999999999999999999888666777


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      +.+....+..++..+.....                                                            
T Consensus       152 ~~~~~~~~~~~~~~il~~~~------------------------------------------------------------  171 (352)
T PF07690_consen  152 WAFLISAILSLIAAILFILF------------------------------------------------------------  171 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_pred             cccccccchhhhhhhhHhhh------------------------------------------------------------
Confidence            77666555444432211110                                                            


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                         .++++++++   +             +++++++       ++.+++.....++.++++.+|...+..+.........
T Consensus       172 ---~~~~~~~~~---~-------------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (352)
T PF07690_consen  172 ---LPEPPPPRE---R-------------ESPKESE-------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGF  225 (352)
T ss_dssp             ---C---STTTT------------------SSTTTT---------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhcccccc---c-------------ccccccc-------cccccccccccccccccchhhhhhhhhhHHHHHHHHh
Confidence               001111100   0             0000000       0000010012345566676764444444444455557


Q ss_pred             hhchHHH-HHhhCCC-chhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----hcCc
Q 009130          349 MNNIAQV-GESLHYS-TTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA----SGFP  422 (543)
Q Consensus       349 ~~~~~~~-~~~~g~s-~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~  422 (543)
                      ..+.|.+ .++.|++ ..+.+...++..+...+++++.|+++||++++      ...........+....+.    ..+.
T Consensus       226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (352)
T PF07690_consen  226 SFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR------RRLLIAILLLILGALGLLLLPFSSSP  299 (352)
T ss_dssp             HHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHCCSHHHCHH
T ss_pred             hcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH------HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            7788887 4667999 78999999999999999999999999998653      233333333333333322    2234


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      ...++..++.|++.+...+....++.|..|++++|++.|+.+....++.. ++|
T Consensus       300 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-igP  352 (352)
T PF07690_consen  300 VWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGI-IGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HCC
Confidence            55666777889999999999999999999999999999999999999884 665

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.9e-25  Score=224.51  Aligned_cols=336  Identities=14%  Similarity=0.046  Sum_probs=228.6

Q ss_pred             HHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccC
Q 009130           39 LKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLL  117 (543)
Q Consensus        39 l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~  117 (543)
                      +.+|.+....|++.+.+.+.++++ +.+|+|.+.||++               ..+.+....+.+++-.++     +...
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~---------------ls~~l~~~~~~w~~~~~~-----~~~~  131 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP---------------LSKGLSVSGILWGLFGFL-----TAAV  131 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC---------------hHHHHHHHHHHHHHHHHH-----HHHH
Confidence            558999999999999888898987 7889999999997               777777777776666655     4445


Q ss_pred             CCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhc------CCCchhHH
Q 009130          118 PRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVC------NGNPSTYI  190 (543)
Q Consensus       118 ~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~------~~~~~~~~  190 (543)
                      +|   ++.+++.|++.|+.++..+|+...+++.||. ++||+.+|+..+..++|+++++.++..+.      ...+|+|.
T Consensus       132 ~s---~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~  208 (495)
T KOG2533|consen  132 HS---FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWL  208 (495)
T ss_pred             hh---hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceee
Confidence            65   8999999999999999999999999999997 68999999999999999999999999974      34678888


Q ss_pred             HHHHHH-HHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccc
Q 009130          191 LVLALL-PTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLR  269 (543)
Q Consensus       191 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (543)
                      |++.++ ....+++..++++..|++.    +                                                 
T Consensus       209 FiI~G~i~~~~gi~~f~~lp~~P~~~----~-------------------------------------------------  235 (495)
T KOG2533|consen  209 FIIEGVITLVLGIVVFFFLPDNPSKA----W-------------------------------------------------  235 (495)
T ss_pred             hhHHHHHHHHHHheEEEEecCChhhc----c-------------------------------------------------
Confidence            877554 3333344444444333210    0                                                 


Q ss_pred             cccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhh
Q 009130          270 VAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATM  349 (543)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~  349 (543)
                        +..+.|+..            ..++.+++        ..+...++.+....++++++|..|.++++.++.....+.+.
T Consensus       236 --fl~~~ek~~------------~~~~~~~~--------~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~  293 (495)
T KOG2533|consen  236 --FLTDEEKEL------------VVERLRES--------PSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFS  293 (495)
T ss_pred             --ccchHHHHH------------HHHHHHhc--------cCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHH
Confidence              000000000            00000000        00000011344667899999999999999999999999999


Q ss_pred             hchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH-HHHHHHHHHHHh-hcCcchHH
Q 009130          350 NNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT-LVAMSIGHIAIA-SGFPGNLF  426 (543)
Q Consensus       350 ~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~-~~~~~i~~~~~~-~~~~~~~~  426 (543)
                      +|+|.++++ .|+|..++..+..++.++++++.+++|+++||+..-  ..++...... .+...++...+. ........
T Consensus       294 ~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~--~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~  371 (495)
T KOG2533|consen  294 YWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI--FARRLLFIVFLCLYAIIGAISLLAAAVLPGAY  371 (495)
T ss_pred             HHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHhhccchHHh
Confidence            999999998 579999999999999999999999999999995300  0222333333 344445544444 32233344


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcch-hhHHHHHHhhhhhhhhhh
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHM-GTIFNTISIACPVGSYIC  474 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~~ig~~i~  474 (543)
                      .+......+.+...+.....+.+....+.+ -+..+....+.+.++.+.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~  420 (495)
T KOG2533|consen  372 GAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAIS  420 (495)
T ss_pred             HHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhh
Confidence            434444444444455555555555544433 344444455555555433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.93  E-value=2.3e-24  Score=221.54  Aligned_cols=367  Identities=13%  Similarity=0.033  Sum_probs=227.6

Q ss_pred             ccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 009130           31 TFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLV  109 (543)
Q Consensus        31 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~  109 (543)
                      ..+.+..++++++|+++.+.+++.+.+.+... .+++.|++.||+|               ||+++.++..+++++...+
T Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g---------------~r~~~~~~~~~~~~~~~~~   93 (420)
T PRK09528         29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLG---------------LKKHLLWIISGLLVLFGPF   93 (420)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------chHHHHHHHHHHHHHHHHH
Confidence            35666678888899999999977666666665 7899999999999               9999988776665554321


Q ss_pred             HHH-HhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          110 WAS-VVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       110 ~~~-~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                      ... ........ .....+..+++.|.+.....+.... ..+.+++++|+++|......++|.++++++++.+.+. .|+
T Consensus        94 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~~~  170 (420)
T PRK09528         94 FIYVFAPLLQYN-ILLGAIVGGIYLGFGFLAGAGAIEA-YIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-NPQ  170 (420)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhhhhccchhhhhh-HHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-Cch
Confidence            110 00000000 0111222344444333332222222 2233456788899999999999999999998877643 444


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      +.++...+..++..+...+.                                                            
T Consensus       171 ~~f~~~~~~~~~~~~~~~~~------------------------------------------------------------  190 (420)
T PRK09528        171 INFWLGSGSALILLVLLFFA------------------------------------------------------------  190 (420)
T ss_pred             HhHHHHHHHHHHHHHHHhcc------------------------------------------------------------
Confidence            44444333322221111111                                                            


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                          ++++++.+   +.         .     ++++     +++  ++......++.+|+|.+|.+.+..+.........
T Consensus       191 ----~~~~~~~~---~~---------~-----~~~~-----~~~--~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~  242 (420)
T PRK09528        191 ----KPDAPSTA---KV---------A-----NALG-----ANA--SAVSLKDALALLKLPKFWFLVLYVIGVACFYDVF  242 (420)
T ss_pred             ----cccccchh---hh---------c-----cchh-----ccc--ccccHHHHHHHccCCCeEeehHHHHHHHHHHHHH
Confidence                11110000   00         0     0000     000  0011123456788888877665444443333334


Q ss_pred             hhchHHHHHh----hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcc
Q 009130          349 MNNIAQVGES----LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPG  423 (543)
Q Consensus       349 ~~~~~~~~~~----~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~  423 (543)
                      ..+.|.+..+    .+.+..+.+.+.++..+...++.+++|+++||+++|      +.+..+.++..++.+++. .++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~------~~~~~~~~l~~~~~~l~~~~~~~~  316 (420)
T PRK09528        243 DQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK------NALLLAGTIMAVRIIGSGFATGPL  316 (420)
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------hhhHHHHHHHHHHHHHHHhcccHH
Confidence            4455666543    356667788889999999999999999999999754      455556666666655554 44555


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHH-HHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHH
Q 009130          424 NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNT-ISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFML  502 (543)
Q Consensus       424 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~  502 (543)
                      .++...++.|++.+...+....++.|.+|++.+++.++. .++...+|. +++|.+.|++.|..|            |+.
T Consensus       317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~-~ig~~~~G~l~~~~G------------~~~  383 (420)
T PRK09528        317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA-VFLSTLAGNLYDSIG------------FQG  383 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH-HHHHHHHHHHHHhhC------------chH
Confidence            566666777777776666666788899999999988776 567777888 488899999999887            999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 009130          503 SFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       503 ~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .|.+.+++.++..++.+...
T Consensus       384 ~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        384 TYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99988887777666555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.93  E-value=1.3e-23  Score=213.00  Aligned_cols=343  Identities=9%  Similarity=-0.057  Sum_probs=246.0

Q ss_pred             cccHHHHhhcCCChhhHHHHHHHhhhcc-cccchhhHhhhhcccccccccccccccCCchH----HHHHHHHHHHHHHHH
Q 009130           34 IYSSTLKSTQNYDQSTLERVAVFKDMGG-SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWV----VHFTGAILCFTGYFL  108 (543)
Q Consensus        34 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~----~~~~g~~~~~~g~~~  108 (543)
                      ++.|.+.+|+|.|..|++++.+...+.. ..+++.|++.||+|               ||+    .+.++.+++.+.  .
T Consensus        25 p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~---------------~~~~~~~~~~~~~~l~~~~--~   87 (382)
T TIGR00902        25 PFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDAN---------------HIIIALRLLALASAIFAAA--F   87 (382)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------cHHHHHHHHHHHHHHHHHH--H
Confidence            4556788899999999996655555554 47889999999997               533    333333222221  1


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                           +..+++   ++.+++.|+++|.+.+...+...++. ++++++|+++.|....+.++|.+++|++++.+.+..+|+
T Consensus        88 -----~~~~~~---~~~l~~~~~l~~~~~~~~~p~~~al~-~~~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~  158 (382)
T TIGR00902        88 -----SAGAHN---AWLLFIAIGLFALFFSAGMPIGDALA-NTWQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQ  158 (382)
T ss_pred             -----HHhhhh---HHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence                 334454   78999999999988888777766665 455678999999999999999999999999988776777


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      +.+..........++ ..                                                              
T Consensus       159 ~~f~~~~~~~~~~~~-~~--------------------------------------------------------------  175 (382)
T TIGR00902       159 NILAILTAGLAFMLI-GF--------------------------------------------------------------  175 (382)
T ss_pred             HHHHHHHHHHHHHHH-HH--------------------------------------------------------------
Confidence            655432211110000 00                                                              


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                        ..++++++++                  + +++      ++.    ......++.+|+|++|...+..++.......+
T Consensus       176 --~~~~~~~~~~------------------~-~~~------~~~----~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~  224 (382)
T TIGR00902       176 --LIKPTIPPKD------------------A-IPE------DES----QGDSAFIALLKNPMNLRFLAAVCLIQGAHAAY  224 (382)
T ss_pred             --HcCCCCCCCc------------------c-ccc------ccc----ccchhHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence              0011100000                  0 000      000    01123567889999999988888777777777


Q ss_pred             hhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHH
Q 009130          349 MNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFV  427 (543)
Q Consensus       349 ~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~  427 (543)
                      ..+.|.+.++.|.++.+.+.+.++..++.+++.++.+++.||++.|      ..+.++.+...+...++. .++.+.++.
T Consensus       225 ~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~  298 (382)
T TIGR00902       225 YGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR------DLLLISAIACVGRWAIIGAIEAFPLIFL  298 (382)
T ss_pred             HHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH------HHHHHHHHHHHHHHHHHHhHhhHHHHHH
Confidence            8888999999999999999999999999999999999999998544      677788888888777666 455566777


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHH-hhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHH
Q 009130          428 GTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTIS-IACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMI  506 (543)
Q Consensus       428 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~  506 (543)
                      ..++-|++++...+....++.+. |++++++.+++.+ +...+|. .++|.+.|++.|..|            + ..|++
T Consensus       299 ~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~-~~g~~~~G~l~~~~g------------~-~~~~~  363 (382)
T TIGR00902       299 LQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLI-AIFTAFAGFIYPTLG------------A-GTFVF  363 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc------------H-HHHHH
Confidence            78899999999888888888887 8889999999986 4567777 488999999999886            5 56777


Q ss_pred             HHHHHHHHHHH
Q 009130          507 MAFVAFFGSLV  517 (543)
Q Consensus       507 ~~~~~~~~~i~  517 (543)
                      .+++.+++.++
T Consensus       364 ~~~~~~~~~~~  374 (382)
T TIGR00902       364 MAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHH
Confidence            77766655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=1.8e-24  Score=219.96  Aligned_cols=347  Identities=11%  Similarity=0.028  Sum_probs=236.8

Q ss_pred             ccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 009130           31 TFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLV  109 (543)
Q Consensus        31 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~  109 (543)
                      ..+.+.+++++++|++..+.+++.+...+... .+++.|++.||+|               +|+++.++.++.+++.++ 
T Consensus        26 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g---------------~k~~~~~~~~~~~~~~~~-   89 (395)
T PRK10054         26 TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFD---------------KKRYMLLAITAFASGFIA-   89 (395)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------------cchhHHHHHHHHHHHHHH-
Confidence            35566678889999999999977666555554 7889999999999               999999999988888877 


Q ss_pred             HHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          110 WASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                          .+++++   ++.+++.|.+.|.+.+...+.......|.+| ++|+++.|+.....++|.+++|++++.+.+ ..|+
T Consensus        90 ----~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~  161 (395)
T PRK10054         90 ----IPLVNN---VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSIN  161 (395)
T ss_pred             ----HHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccC
Confidence                555555   6777778888888777777777778889887 679999999999999999999999887753 3455


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      ..+....+...+.++...+                                                             
T Consensus       162 ~~f~~~~~~~~i~~i~~~~-------------------------------------------------------------  180 (395)
T PRK10054        162 LPFWLAAICSAFPLVFIQI-------------------------------------------------------------  180 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence            4444333222221110000                                                             


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                        ..++++++++                  +          +++     +..+.++.+|+|.+|...+..++.......+
T Consensus       181 --~~~~~~~~~~------------------~----------~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  225 (395)
T PRK10054        181 --WVQRSEKAIA------------------T----------ETG-----SVWSPSVLLQDKALLWFTCSGFLASFVSGAF  225 (395)
T ss_pred             --HHhccccccc------------------c----------chh-----hhhhhhhhccCceehHHHHHHHHHHHHHHHh
Confidence              0001100000                  0          000     0012256788999988877766655544444


Q ss_pred             hhchHHHHH---hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh--cCcc
Q 009130          349 MNNIAQVGE---SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS--GFPG  423 (543)
Q Consensus       349 ~~~~~~~~~---~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~--~~~~  423 (543)
                      ..+.+.+..   +.+.+....+...+...+.....++..|++.||.++      ++.+..+.++..++...+..  ++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~  299 (395)
T PRK10054        226 ASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANI------RPLMTAGTLCFVIGLVGFIFSGNSLL  299 (395)
T ss_pred             hhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCc------hhHHHHHHHHHHHHHHHHHHcchHHH
Confidence            455566553   335566666777777777777777777888888743      35566666666666655442  2333


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHH
Q 009130          424 NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLS  503 (543)
Q Consensus       424 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~  503 (543)
                      .+.+..++.+++.+...+.....+.+..|++.+++.+|..+ ...+|. .++|.+.|.+.|..|            +...
T Consensus       300 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~-~~Gp~~~G~l~~~~g------------~~~~  365 (395)
T PRK10054        300 LWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGA-AINPLVSGVILTTLP------------PWSL  365 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHH-HHHHHHHHHHHHHcC------------hhhH
Confidence            44556778888887777777788999999999999988765 455777 589999999999987            7777


Q ss_pred             HHHHHHHHHHHHHH
Q 009130          504 FMIMAFVAFFGSLV  517 (543)
Q Consensus       504 f~~~~~~~~~~~i~  517 (543)
                      |++.+....+..++
T Consensus       366 ~~~~~~~~~~~~~~  379 (395)
T PRK10054        366 FVILALAIVAAWLL  379 (395)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77665544444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.93  E-value=1.1e-23  Score=214.58  Aligned_cols=326  Identities=12%  Similarity=0.092  Sum_probs=215.5

Q ss_pred             ccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 009130           31 TFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLV  109 (543)
Q Consensus        31 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~  109 (543)
                      .+....|.+.+++|.++.+.++..+.+.++.. .+++.|++.||+|               ||+.+..+.++++++..+ 
T Consensus        21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g---------------~r~~l~~~~~~~~i~~~~-   84 (392)
T PRK10473         21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSG---------------RKPVAIPGAALFIIASLL-   84 (392)
T ss_pred             HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhC---------------ChHHHHHHHHHHHHHHHH-
Confidence            34467899999999999999977777777765 6789999999999               999999999999999888 


Q ss_pred             HHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          110 WASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                          ...+++   ++.+++.|+++|++.+...+....++.+++| ++|+++.++......+|..++|.++..+.+..+|+
T Consensus        85 ----~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~  157 (392)
T PRK10473         85 ----CSLAET---SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQ  157 (392)
T ss_pred             ----HHHhCc---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence                566665   7888889999999999988889999999998 68999999999999999999988887776666777


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      +.+....+..++......+                                                             
T Consensus       158 ~~~~~~~~~~~i~~~~~~~-------------------------------------------------------------  176 (392)
T PRK10473        158 SLFYTMAAMGILVLLLSLF-------------------------------------------------------------  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence            6655443322221111000                                                             


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                        ..++++++++                  +          ++.    ......++.++++.++...+...+.......+
T Consensus       177 --~~~~~~~~~~------------------~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (392)
T PRK10473        177 --ILKETRPARA------------------P----------AAS----SKPRENSESLLNRFFLSRLVITTLSVTVILTF  222 (392)
T ss_pred             --HcCCCCCccc------------------C----------Ccc----chHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence              0011100000                  0          000    00112345677888776555544443333344


Q ss_pred             hhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcchHH
Q 009130          349 MNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPGNLF  426 (543)
Q Consensus       349 ~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~  426 (543)
                      ..+.|.+.+ +.|+++.+.+...+..+++.++++++.+++.||+++|      +.+..+.++..++.+++.. .+.....
T Consensus       223 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (392)
T PRK10473        223 VNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR------TLMLTSQVLFLAAGITLALSPSHAVSL  296 (392)
T ss_pred             HHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555566654 5699999999999999999999999999999999654      5566666665555554442 2222233


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcch-hhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHM-GTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~-g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      ....+.+.+.+..++.  ....+..|.+++ +.+.++..++..+|+     .+.+++.+..|
T Consensus       297 ~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~-----~~~~~l~~~~g  351 (392)
T PRK10473        297 FGITLICAGFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGS-----SLWIWLAAVLG  351 (392)
T ss_pred             HHHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHH-----HHHHHHHHHhc
Confidence            3333444444333322  223344444333 455555444444444     45666666665

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.93  E-value=1.3e-23  Score=213.03  Aligned_cols=325  Identities=9%  Similarity=-0.055  Sum_probs=219.4

Q ss_pred             ccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 009130           31 TFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLV  109 (543)
Q Consensus        31 ~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~  109 (543)
                      .+....|.+.+++|+++.+.+++.+.+.++.. .+++.|.+.||+|               ||+++..+.++.+++..+ 
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g---------------~~~~~~~~~~~~~i~~~~-   72 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFG---------------RKPVILGGTLVFALAAVA-   72 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcC---------------ChHHHHHHHHHHHHHHHH-
Confidence            35567789999999999999977777777765 6889999999998               999999999999999988 


Q ss_pred             HHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          110 WASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                          +.++++   ++.+++.|+++|++.+...+.....+.+++| ++|++++++...+..+|..+++.+.+.+.+..+|+
T Consensus        73 ----~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  145 (377)
T PRK11102         73 ----CALAQT---IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWH  145 (377)
T ss_pred             ----HHHHcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChH
Confidence                555565   7888999999999999998989999999998 67999999999999999999999988887666676


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      +.+....+..++..+...+                                                             
T Consensus       146 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  164 (377)
T PRK11102        146 AIFWVLALAAILAAALVFF-------------------------------------------------------------  164 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence            6655443332221111000                                                             


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                        ..++++++++                  ++          +. +.++...+.++.++++.++...+..++.......+
T Consensus       165 --~~~~~~~~~~------------------~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (377)
T PRK11102        165 --FIPETLPKER------------------RQ----------PF-HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF  213 (377)
T ss_pred             --hCCccCcccc------------------cC----------CC-ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence              0011100000                  00          00 00011123456788888887777666555555555


Q ss_pred             hhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH-HH--HHh-hc-Cc
Q 009130          349 MNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG-HI--AIA-SG-FP  422 (543)
Q Consensus       349 ~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~-~~--~~~-~~-~~  422 (543)
                      ..+.|.+..+ .|+++++.+...++..++..+++++.|++.||+++|      +.+..+.++..+. ..  ... .. +.
T Consensus       214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL------NMLRFGLWIQFIMGIWLVVSALLDLGF  287 (377)
T ss_pred             HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH------HHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            6666766654 699999999999999999999999999999999654      4555554433222 21  121 11 12


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhh-hhhhhhhhhhh
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIAC-PVGSYICSVRI  478 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~ig~~i~~~~l  478 (543)
                      ....+...+.+.+.+.........+.|..| ++++++.++.+... .++. ++++.+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~-~~g~~~  342 (377)
T PRK11102        288 WALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGA-IVGALL  342 (377)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHH-HHHHHH
Confidence            222223333333334334444455666665 78899998876543 3444 455543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.93  E-value=5.4e-24  Score=216.37  Aligned_cols=349  Identities=11%  Similarity=-0.043  Sum_probs=226.0

Q ss_pred             cHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHh
Q 009130           36 SSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVV  114 (543)
Q Consensus        36 ~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~  114 (543)
                      .+.+.+|++.++.+.+++.+.+.+.+. ++++.|.++||+|               ||+++..+.++++++.++     +
T Consensus        26 ~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~g---------------rr~vl~~~~~~~~~~~~~-----~   85 (393)
T PRK11195         26 AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFP---------------KGRVMFIANGIKLLGCLL-----M   85 (393)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccC---------------CchhhHHHHHHHHHHHHH-----H
Confidence            355678999999999988888877776 7899999999999               999999999999988877     4


Q ss_pred             ccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHH
Q 009130          115 GLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVL  193 (543)
Q Consensus       115 ~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~  193 (543)
                      .++.+   .   ++.|+++|++.+...|...+++.|++| +||+++.|+......+|.+++|.+++.+.+.. |+..+.+
T Consensus        86 ~~~~~---~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i  158 (393)
T PRK11195         86 LFGIH---P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAV  158 (393)
T ss_pred             HHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            33332   2   678999999999999999999999998 68999999999999999999999988875421 1111111


Q ss_pred             HHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccc
Q 009130          194 ALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAIT  273 (543)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (543)
                      ......++.                                                             +   .....+
T Consensus       159 ~~~~~~~~~-------------------------------------------------------------~---~~~~l~  174 (393)
T PRK11195        159 CALIYLLAA-------------------------------------------------------------L---FNLFIP  174 (393)
T ss_pred             HHHHHHHHH-------------------------------------------------------------H---HHhcCC
Confidence            111000000                                                             0   000111


Q ss_pred             cccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchH
Q 009130          274 ADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIA  353 (543)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~  353 (543)
                      +++++++                 +.+.++        ....++.....++++++|.+.......++............+
T Consensus       175 ~~~~~~~-----------------~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (393)
T PRK11195        175 RLGARRP-----------------GQSWNP--------IALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVL  229 (393)
T ss_pred             CCccccc-----------------ccCCCH--------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1110000                 000000        000001112235667777766544443333333334444455


Q ss_pred             HHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHH
Q 009130          354 QVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMI  431 (543)
Q Consensus       354 ~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l  431 (543)
                      .+.++ +|+++.+.+...+..+++..++.+..+++.||.+++      ..+..+..+ .+..+.+. .++.+...+..++
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~------~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~  302 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL------RVLPAGILM-GLVVLLMALQHSLLPAYPLLIL  302 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------chHHHHHHH-HHHHHHHHHHhHHHHHHHHHHH
Confidence            66654 699999999999999999999999999998876432      344444332 23332333 2333334455667


Q ss_pred             HHhhhhhhhhhHHHHHHhhcCCcc-hhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHH
Q 009130          432 VGVCYGSQWSLMPTITSEIFGVRH-MGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFV  510 (543)
Q Consensus       432 ~G~~~g~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~  510 (543)
                      .|++.+...+...+.+.+..|++. +|.+.++.++...++.. ++..+.+.+ +..|            -+..+++....
T Consensus       303 ~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~-~~~~~~~~~-~~~~------------~~~~~~~~~~~  368 (393)
T PRK11195        303 IGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAML-LMLGLYSLL-VKLG------------VPVVAVIVGFG  368 (393)
T ss_pred             HHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHH-HHHHHHHHH-HHcC------------CCHHHHHHHHH
Confidence            788888777667777767644443 69999999999999874 676667644 5555            56677766665


Q ss_pred             HHHHHHHHHHH
Q 009130          511 AFFGSLVAFLL  521 (543)
Q Consensus       511 ~~~~~i~~~~~  521 (543)
                      .++++.+.+..
T Consensus       369 ~~~~~~~~~~~  379 (393)
T PRK11195        369 LLVALAMALLW  379 (393)
T ss_pred             HHHHHHHHHHH
Confidence            56665554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.93  E-value=4.3e-24  Score=217.39  Aligned_cols=350  Identities=12%  Similarity=-0.001  Sum_probs=228.8

Q ss_pred             ccccccccHHHHhhcC--CChhhHHHHHHH--hhhcc----cccchhhHhhhhcccccccccccccccCCchHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQN--YDQSTLERVAVF--KDMGG----SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAI  100 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~--~s~~~~~~~~~~--~~~~~----~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~  100 (543)
                      .+.++...+.+.+++.  .++.+.+.+.+.  +..+.    ..+++.|++.||+|               ||+++..+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g---------------~r~~l~~~~~   73 (394)
T TIGR00883         9 FYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIG---------------RKKTLVITLL   73 (394)
T ss_pred             HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhh---------------hHHHHHHHHH
Confidence            3455666777777754  445555533222  12211    24678999999998               9999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCCh-----HHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHH
Q 009130          101 LCFTGYFLVWASVVGLLPRPVP-----VPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVL  174 (543)
Q Consensus       101 ~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~  174 (543)
                      +..++.++     ++++++...     ...+++.|+++|++.+...+....++.|++| ++|+++.++...+..+|.+++
T Consensus        74 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~  148 (394)
T TIGR00883        74 MMGIGTLL-----IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLA  148 (394)
T ss_pred             HHHHHHHH-----HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHH
Confidence            99999998     666666200     1247789999999999999999999999997 689999999999999999999


Q ss_pred             HHHHHHhc--------CCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 009130          175 TQVYKTVC--------NGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLL  246 (543)
Q Consensus       175 ~~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (543)
                      +.+...+.        +...|++.+....+..++++....                                        
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----------------------------------------  188 (394)
T TIGR00883       149 ALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRR----------------------------------------  188 (394)
T ss_pred             HHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence            87765542        123455444433322221111000                                        


Q ss_pred             cchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhh
Q 009130          247 TFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAM  326 (543)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (543)
                                              ..+++++.++                  + +        +++   +....+.++.+
T Consensus       189 ------------------------~~~~~~~~~~------------------~-~--------~~~---~~~~~~~~~~~  214 (394)
T TIGR00883       189 ------------------------NLEETPVFEK------------------A-Q--------EKH---KKKRGPIRETL  214 (394)
T ss_pred             ------------------------hcCCChhHHH------------------H-H--------hcc---ccccCCHHHHH
Confidence                                    0011100000                  0 0        000   00011234444


Q ss_pred             cchh--HHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          327 CTGN--FWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       327 ~~~~--f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      +++.  ++......++..........+.|.+.+ +.|.++.+.+....+..++..+++++.|+++||++||      +.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~------~~~  288 (394)
T TIGR00883       215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR------PVL  288 (394)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH------HHH
Confidence            4444  666666666555555666777888884 5799999999999999999999999999999999754      333


Q ss_pred             HHHH-HHHHHHHHH-Hh-h--cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHH-Hhhhhhhhhhhhhh
Q 009130          404 VITL-VAMSIGHIA-IA-S--GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTI-SIACPVGSYICSVR  477 (543)
Q Consensus       404 ~~~~-~~~~i~~~~-~~-~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~~~~  477 (543)
                      .... +....+... .. .  .+........++.|++.+...+...+++.|.+|+++++++.|+. ++...+|+ .++|.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~-~~~p~  367 (394)
T TIGR00883       289 IIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFG-GFAPY  367 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHh-hHHHH
Confidence            3222 222222111 11 1  23333445566778888888888899999999999999999985 55566777 48899


Q ss_pred             hhhhhhhhccCCCCccccccchhHHHHHHHHHH
Q 009130          478 IIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFV  510 (543)
Q Consensus       478 l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~  510 (543)
                      +.|.+.|..|.           |+..++...++
T Consensus       368 ~~g~l~~~~g~-----------~~~~~~~~~~~  389 (394)
T TIGR00883       368 IAAALVAMTGD-----------WYAIGYYLAAL  389 (394)
T ss_pred             HHHHHHHHcCc-----------chhHHHHHHHH
Confidence            99999998763           66665555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.93  E-value=4.1e-24  Score=215.64  Aligned_cols=327  Identities=14%  Similarity=0.134  Sum_probs=216.0

Q ss_pred             ccccccccHH-HHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSST-LKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGY  106 (543)
Q Consensus        29 ~~~~~~~~~~-l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~  106 (543)
                      .+.++.+.|. +++++|+|+.+.+++.+...++.. .+++.|++.||+|               ||+++.++.++..++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886        17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFG---------------PRYTTTLSLLLLAIPC   81 (366)
T ss_pred             HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhC---------------chHHHHHHHHHHHHHH
Confidence            4667888885 999999999999988887777775 7889999999999               9999999999999999


Q ss_pred             HHHHHHHhccCC-CCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC-
Q 009130          107 FLVWASVVGLLP-RPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN-  183 (543)
Q Consensus       107 ~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~-  183 (543)
                      ++     +++++ +   ++.+++.|+++|++.+. +++...++++++| ++|++++++......+|..+++.+...+.. 
T Consensus        82 ~~-----~~~~~~~---~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  152 (366)
T TIGR00886        82 LW-----AGLAVQS---YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS  152 (366)
T ss_pred             HH-----HHHHhhh---HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            88     55666 5   78899999999999664 5667788999998 689999999987777777776665544321 


Q ss_pred             ---------CCchhHHH-HH-HHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhH
Q 009130          184 ---------GNPSTYIL-VL-ALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWA  252 (543)
Q Consensus       184 ---------~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (543)
                               ..+|++.+ +. +.+..+..++...+                                             
T Consensus       153 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  187 (366)
T TIGR00886       153 LIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV---------------------------------------------  187 (366)
T ss_pred             HHhcccccccccccchhHHHHHHHHHHHHHHHHHh---------------------------------------------
Confidence                     11344444 21 11111111110000                                             


Q ss_pred             HHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHH
Q 009130          253 RIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFW  332 (543)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  332 (543)
                                         .++.+++++   + +  ++++      .+++.       .. .+++.....++.++++++|
T Consensus       188 -------------------~~~~~~~~~---~-~--~~~~------~~~~~-------~~-~~~~~~~~~~~~~~~~~~~  228 (366)
T TIGR00886       188 -------------------GADTPPGKP---A-T--GKLS------FKGAR-------WS-VGTGALGDQLKVFRDRHTW  228 (366)
T ss_pred             -------------------cccCCcccc---c-c--hhcc------ccccc-------cc-ccchhHHHHHHHHhccchh
Confidence                               111111100   0 0  0000      00000       00 0000112346778899999


Q ss_pred             HHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHH
Q 009130          333 FLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMS  411 (543)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~  411 (543)
                      ...+..++.......+..+.|.++++ +|+++.+++.+.++..+.+.+++++.|+++||+++|      +.+..+.+...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~------~~~~~~~~~~~  302 (366)
T TIGR00886       229 ILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA------RKLLMSFLGVA  302 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc------hhHHHHHHHHH
Confidence            88888777766666777888888865 599999999999999999999999999999999764      23333333333


Q ss_pred             HHHHHH--hhc---CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhh
Q 009130          412 IGHIAI--ASG---FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVG  470 (543)
Q Consensus       412 i~~~~~--~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig  470 (543)
                      .+..++  ...   +.....+...+.+++.|...+...+++++.+| +++|+++|+.+....+|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       303 MGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            333322  222   22222333344444555555556667778776 79999999998877765

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.93  E-value=3.5e-23  Score=211.05  Aligned_cols=330  Identities=12%  Similarity=-0.023  Sum_probs=227.5

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      +.+....|.+.+++|+++.+.+++.+.+.++.. .+++.|+++||+|               ||+++..+.++.+++.++
T Consensus        25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g---------------rr~~~~~~~~~~~~~~~~   89 (394)
T PRK11652         25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVG---------------RRPVILVGMSIFILGTLV   89 (394)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcC---------------ChHHHHHHHHHHHHHHHH
Confidence            344556789999999999999977777777776 6889999999999               999999999999998888


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           ..++++   ++.+++.|++.|++.+...+.......|+++ ++++++.++...+..++..++|++.+.+.+..+|
T Consensus        90 -----~~~~~~---~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  161 (394)
T PRK11652         90 -----ALFAHS---LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW  161 (394)
T ss_pred             -----HHHHcc---HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence                 555565   7889999999999998887777778889998 6799999999999999999999998888766677


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ++.+....+...+..+...+                                                            
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~------------------------------------------------------------  181 (394)
T PRK11652        162 RACYLFLLLLGAGVTFSMAR------------------------------------------------------------  181 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------------------------------------------------------------
Confidence            76665543322211100000                                                            


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                         ..+++++++                   .          ++    ++.....++.++++.+|...+..+........
T Consensus       182 ---~~~~~~~~~-------------------~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (394)
T PRK11652        182 ---WMPETRPAD-------------------A----------RR----TRVLASYRTLLSNRRFNCYLLMLIGTLAGIAV  225 (394)
T ss_pred             ---hCCccCccc-------------------c----------ch----hHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence               001100000                   0          00    00123346677888887666554443333333


Q ss_pred             hhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh---cCcc
Q 009130          348 TMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS---GFPG  423 (543)
Q Consensus       348 ~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---~~~~  423 (543)
                      +....+.+.++ .|+++.+.+.......++..++.++.+++.||.+++     ............+.......   .+..
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (394)
T PRK11652        226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-----MWQSVICCLLAGLLMWIPGWFGVMNVW  300 (394)
T ss_pred             HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            44455666766 799999988888888888888888888888887522     11111122222222222211   2233


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 009130          424 NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDR  485 (543)
Q Consensus       424 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~  485 (543)
                      ......++.+++.+...+.......|.+| ++++++.++.+....+|.. +++.+.+.+.+.
T Consensus       301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~-~~~~~~~~~~~~  360 (394)
T PRK11652        301 TLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSG-LAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHH-HHHHHHHHccCC
Confidence            45556677788888888888888888886 6889999999888888884 777777776554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.93  E-value=1.8e-23  Score=213.91  Aligned_cols=359  Identities=11%  Similarity=0.015  Sum_probs=238.8

Q ss_pred             cccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVW  110 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~  110 (543)
                      ++.+.+.+.+++|++..|+|++.+...++.. .+++.|.++||+|              ++|+++.++.++.+++..+  
T Consensus        22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g--------------~~r~~~~~~~~~~~~~~~~--   85 (418)
T TIGR00889        22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWL--------------SAQKVYAVCHFAGALLLFF--   85 (418)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHHHHHHHH--
Confidence            4667788899999999999988777777765 7889999999996              2588888888888777777  


Q ss_pred             HHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHH-----------hhhcCCCCcchhHHHHHhhhhhHHHHHHHHH
Q 009130          111 ASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTG-----------VMNFGHYSGTIVGILKGFVGLSGAVLTQVYK  179 (543)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~-----------~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~  179 (543)
                         ..+.++   ++.++..|++.|++.+...+...+..           .+.++  |.+..|.      +|.++++.+++
T Consensus        86 ---~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~--~~r~~G~------lG~~ig~~l~g  151 (418)
T TIGR00889        86 ---AAQVTT---PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP--PIRVMGT------IGFIAAMWAVS  151 (418)
T ss_pred             ---HHHhcC---HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--Ceeeehh------HHHHHHHHHHH
Confidence               555665   78888899999988776666554442           22333  4444542      56666666665


Q ss_pred             HhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Q 009130          180 TVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFII  259 (543)
Q Consensus       180 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (543)
                      .+.....|..++..+.+..+. ++                                                        
T Consensus       152 ~l~~~~~~~~f~~~~~~~~~~-~~--------------------------------------------------------  174 (418)
T TIGR00889       152 LLDIELSNIQLYITAGSSALL-GV--------------------------------------------------------  174 (418)
T ss_pred             HhcccchhHHHHHHHHHHHHH-HH--------------------------------------------------------
Confidence            552222233222222221111 00                                                        


Q ss_pred             HHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHH
Q 009130          260 LLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATL  339 (543)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~  339 (543)
                          .    ....+++++.++                  +++        .+.  ++....+.++.+|+|.++.+.+..+
T Consensus       175 ----~----~~~~~e~~~~~~------------------~~~--------~~~--~~~~~~~~~~~~k~~~~~~~~~~~~  218 (418)
T TIGR00889       175 ----F----ALTLPDIPVAKS------------------TAK--------MSI--KVMLGLDAFILFKNKRMAIFFFFSM  218 (418)
T ss_pred             ----H----HhcCCCCCCCcc------------------ccc--------cCH--HHHhhhhHHHHhcCCCeeeHHHHHH
Confidence                0    001111110000                  000        000  0111123456789999888777777


Q ss_pred             hhhchhhhhhhchHHHHHhhCCCc--------hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHH
Q 009130          340 CGMGSGIATMNNIAQVGESLHYST--------TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMS  411 (543)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~g~s~--------~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~  411 (543)
                      +..........+.+.+.++.|.++        +..+...++..+..+++.+..|+++||+++|      +++..+.+...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r------~~l~~~~~~~~  292 (418)
T TIGR00889       219 LLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK------KVMLLSLVAWA  292 (418)
T ss_pred             HHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHH
Confidence            655444444556677777777654        5568888999999999999999999999544      67777777777


Q ss_pred             HHHHHHhh-c-Cc---chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHH-hhhhhhhhhhhhhhhhhhhhh
Q 009130          412 IGHIAIAS-G-FP---GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTIS-IACPVGSYICSVRIIGRIYDR  485 (543)
Q Consensus       412 i~~~~~~~-~-~~---~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~l~~~  485 (543)
                      ++..++.. . +.   ..+++..++.|++.+...+....++.|.+|++++++++|+.+ ....+|. +++|.+.|.+.|.
T Consensus       293 v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~-~iGp~l~G~l~~~  371 (418)
T TIGR00889       293 LRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGS-LLGYILSGVMVEK  371 (418)
T ss_pred             HHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHH
Confidence            76555442 2 12   234556777888888777777888999999999999999997 6677888 5899999999998


Q ss_pred             ccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 009130          486 VASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTR  526 (543)
Q Consensus       486 ~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  526 (543)
                      .|+.      +..+|+..|++.+++.++++++.+++.++.+
T Consensus       372 ~g~~------~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       372 MFAY------GTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             hccc------cCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            6520      1124999999998888888877777766543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.9e-23  Score=208.56  Aligned_cols=397  Identities=11%  Similarity=0.074  Sum_probs=266.8

Q ss_pred             HHhhcC--CChhhHH----HHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           39 LKSTQN--YDQSTLE----RVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        39 l~~~~~--~s~~~~~----~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      +.+.+|  .++.+..    .+.+++.+|.. .+...|.++||+|               ||..+.++.++..++.++..+
T Consensus        45 ~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~G---------------RK~~l~~~~~l~~~~~~~~~~  109 (485)
T KOG0569|consen   45 LIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFG---------------RKNALLLSNLLAVLAALLMGL  109 (485)
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------chHHHHHHHHHHHHHHHHHHH
Confidence            345566  5555544    44556667766 5668999999999               999999999999888888554


Q ss_pred             HHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHH-hc-CCCchh
Q 009130          112 SVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKT-VC-NGNPST  188 (543)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~-l~-~~~~~~  188 (543)
                        +..+++   +..++++|++.|+.+|........++.|.-| +.||..-.....+..+|..++..++.- +. +++.|.
T Consensus       110 --s~~~~~---~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~  184 (485)
T KOG0569|consen  110 --SKSAPS---FEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWP  184 (485)
T ss_pred             --HHHhhh---HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchH
Confidence              333343   8889999999999999999999999999999 569999999888888888888666643 33 556799


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcc-cchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVD-DKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      +.+....+|.++.++..++.++.|..--. +++...+...+                                       
T Consensus       185 ~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl---------------------------------------  225 (485)
T KOG0569|consen  185 YLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKAL---------------------------------------  225 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHH---------------------------------------
Confidence            99999999999999988888777641000 00000000000                                       


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHH-----HHHHHHhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWF-----LCIATLCGM  342 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-----~~l~~~~~~  342 (543)
                            +         .....++++       ++.++..+..++++..+.++.+.+++++++....     +.+......
T Consensus       226 ------~---------~y~G~~~~~-------~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~  283 (485)
T KOG0569|consen  226 ------K---------FYRGKEDVE-------AEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQF  283 (485)
T ss_pred             ------H---------HHhCCCcch-------hHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHh
Confidence                  0         000000000       0000000000111111124466778887654322     222222233


Q ss_pred             chhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----
Q 009130          343 GSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA----  418 (543)
Q Consensus       343 ~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~----  418 (543)
                      .+......+...++++.|+++.++.+.....++.+.+..+++.++.||+||      |++++.+..++.+..+++.    
T Consensus       284 sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gR------RpLll~~~~~~~~~~~~~~~~~~  357 (485)
T KOG0569|consen  284 SGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGR------RPLLLISLSLMAVALLLMSIALF  357 (485)
T ss_pred             cCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445566677788889999999999999999999999999999999965      4788888777766655443    


Q ss_pred             hc--C-cch---HHHHHHHHHhhhhhh-hhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCC
Q 009130          419 SG--F-PGN---LFVGTMIVGVCYGSQ-WSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGED  491 (543)
Q Consensus       419 ~~--~-~~~---~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~  491 (543)
                      ..  . .+.   .+++.++..+.++.. -++.+-+.+|++|++.|+.+.++....+++..++++ ..+..+.+..|.   
T Consensus       358 l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~-~~fp~l~~~~g~---  433 (485)
T KOG0569|consen  358 LSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVG-FAFPPLQNVIGP---  433 (485)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc---
Confidence            11  1 111   123333333333333 345567899999999999999999999999886544 567777787762   


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHh
Q 009130          492 HTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIRR  536 (543)
Q Consensus       492 ~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  536 (543)
                                ..|..+.+.+.+..+..+...+|+|++...+..++
T Consensus       434 ----------~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~  468 (485)
T KOG0569|consen  434 ----------YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEE  468 (485)
T ss_pred             ----------hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHH
Confidence                      67788888888888888888999998776655444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.92  E-value=3.3e-22  Score=202.89  Aligned_cols=342  Identities=11%  Similarity=-0.072  Sum_probs=232.3

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCch----HHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPW----VVHFTGAILCFTGYF  107 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r----~~~~~g~~~~~~g~~  107 (543)
                      ..+.|.+.+|+|.|..+++++.+.+.+... .+++.|++.||+|               ||    +.+.++.++..+  .
T Consensus        24 ~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g---------------~~~~~~~~~~~~~~~~~~--~   86 (382)
T PRK11128         24 LPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPS---------------QLIPALRLLALLTLLFAV--A   86 (382)
T ss_pred             hhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc---------------chHHHHHHHHHHHHHHHH--H
Confidence            344566778899999999977666666655 7889999999998               53    333333222221  1


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                      .     ....++   ++.+++.|++.|++.+...+...++..+| +++|+++.+.......+|.+++|++++.+.+..+|
T Consensus        87 ~-----~~~~~~---~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~  157 (382)
T PRK11128         87 F-----WFGAHS---FWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGE  157 (382)
T ss_pred             H-----HHhccc---HHHHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence            1     223344   88888999999998888777766665554 66788999999999999999999999998877677


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      +..++...+..++..+...                                                             
T Consensus       158 ~~~f~~~~~~~~~~~~~~~-------------------------------------------------------------  176 (382)
T PRK11128        158 QAILWILTAGVASMLLGQL-------------------------------------------------------------  176 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence            7665543322111110000                                                             


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                          ..++  +.+   +++          + +           ++  .++...+.++.+|+|.+|...+..++.......
T Consensus       177 ----~~~~--~~~---~~~----------~-~-----------~~--~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~  223 (382)
T PRK11128        177 ----LRPT--IMP---QGE----------S-R-----------QQ--ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA  223 (382)
T ss_pred             ----ccCC--CCC---ccc----------c-c-----------cc--cccccchHHHHHcChhHHHHHHHHHHHHHHhHh
Confidence                0000  000   000          0 0           00  000113457889999999887776666555555


Q ss_pred             hhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHH
Q 009130          348 TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLF  426 (543)
Q Consensus       348 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~  426 (543)
                      ...+.|.+.++.|+++.+.+.+.++..++..+..++.|++.||+++|      +.+..+.+...++.+++. .++++..+
T Consensus       224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK11128        224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR------DLLLLSAICGVVRWGLMGSTTALPWLI  297 (382)
T ss_pred             HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            66677888888999999999999988899999999999999998544      566667777666665554 44555667


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHH-hhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTIS-IACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      +..++.|++.+...+....+..+. +++++++..+..+ ....+|. .++|.+.|.+.|..|            + ..|+
T Consensus       298 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~-~ig~~i~G~l~~~~g------------~-~~~~  362 (382)
T PRK11128        298 VIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSI-AIMTVLSGFLYQHLG------------A-GVFW  362 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc------------H-HHHH
Confidence            778888888887777777777776 5667788888876 4455565 488999999999886            4 4566


Q ss_pred             HHHHHHHHHH
Q 009130          506 IMAFVAFFGS  515 (543)
Q Consensus       506 ~~~~~~~~~~  515 (543)
                      ..+++.+++.
T Consensus       363 ~~~~~~~~~~  372 (382)
T PRK11128        363 VMALVALPAL  372 (382)
T ss_pred             HHHHHHHHHH
Confidence            6655554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=2.3e-22  Score=204.75  Aligned_cols=349  Identities=10%  Similarity=0.002  Sum_probs=217.3

Q ss_pred             ccccccHHHHhhcCCChhhHHHH-HHHhhhcccccchhhHhhhhcccccccccccccccCCchHHH-HHHHHHHHHHHHH
Q 009130           31 TFSIYSSTLKSTQNYDQSTLERV-AVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVH-FTGAILCFTGYFL  108 (543)
Q Consensus        31 ~~~~~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~-~~g~~~~~~g~~~  108 (543)
                      ..+.+.+++++|+|++.++++++ +.....+...+++.+...||+|               +|+.+ ..+.++.+++..+
T Consensus        34 ~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g---------------~r~~~~~~~~~~~~~~~~~   98 (393)
T PRK15011         34 QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRG---------------DRKSLIVFCCLLGVLACTL   98 (393)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------chhHHHHHHHHHHHHHHHH
Confidence            34566677899999999999966 4455666666666555599998               88765 4555555566666


Q ss_pred             HHHHHhccCCCCChHHHHHHHH-HHHhcCcchhhhhHHHHHhhhcCC-CC--cchhHHHHHhhhhhHHHHHHHHHHhcCC
Q 009130          109 VWASVVGLLPRPVPVPLMCLFI-FTAAHAQNFFNTGNIVTGVMNFGH-YS--GTIVGILKGFVGLSGAVLTQVYKTVCNG  184 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r-~l~G~g~g~~~~~~~~~~~~~fp~-~r--g~~~gi~~~~~~lg~~i~~~l~~~l~~~  184 (543)
                           .+++++   ++.+++.+ ++.|.+ +...+.......++.|+ +|  +...++...+.++|.+++|++++.+.+.
T Consensus        99 -----~~~~~~---~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~  169 (393)
T PRK15011         99 -----FAWNRN---YFVLLFVGVFLSSFG-STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG  169 (393)
T ss_pred             -----HHHhhH---HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence                 445555   66665554 445454 45566666666676653 34  3345788889999999999999998777


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHh
Q 009130          185 NPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLL  264 (543)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (543)
                      .+|++.+....+..++..+...+                                                         
T Consensus       170 ~gw~~~f~~~~~~~~~~~~~~~~---------------------------------------------------------  192 (393)
T PRK15011        170 FSFTVMYLSAAVAFIVCGVMVWL---------------------------------------------------------  192 (393)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHh---------------------------------------------------------
Confidence            77887766554333221111000                                                         


Q ss_pred             hcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhch
Q 009130          265 ASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGS  344 (543)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~  344 (543)
                            ..++.+++++   +              .+++       .+. .        ++  +.+..+......+.....
T Consensus       193 ------~~~~~~~~~~---~--------------~~~~-------~~~-~--------~~--~~~~~~~~~~~~~~~~~~  231 (393)
T PRK15011        193 ------FLPSMRKELP---L--------------ATGT-------LEA-P--------RR--NRRDTLLLFVICTLMWGT  231 (393)
T ss_pred             ------hcCccCCCCc---c--------------cccc-------ccc-c--------cc--ccccHHHHHHHHHHHHHH
Confidence                  0111100000   0              0000       000 0        00  001122222222333333


Q ss_pred             hhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc
Q 009130          345 GIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP  422 (543)
Q Consensus       345 ~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~  422 (543)
                      ...+..+.|.+.+ ++|+++.+++.+.+...+..++++++.|+++||+++|      +.+..+.+...+.+.... .+++
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~------~~~~~~~~~~~~~~~~~~~~~~~  305 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKR------FLMRVAAVAGVCFYAGMLMAHSP  305 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHHHHHHHhhH
Confidence            3445567787775 4699999999888888888889999999999999764      344444443333333222 3344


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHH
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFML  502 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~  502 (543)
                      ....+..++.+++.+...+..+.+..|.+| ++++++.++.+....+|. .++|.+.|.+.|..+            |+.
T Consensus       306 ~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~-~~g~~l~G~i~~~~g------------~~~  371 (393)
T PRK15011        306 AILLGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGW-IIAGSLAGIVAEIWN------------YHA  371 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHhh------------hHH
Confidence            444444555556666655666677788887 469999999888888888 488999999999876            999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 009130          503 SFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       503 ~f~~~~~~~~~~~i~~~~~  521 (543)
                      .|++..++.+++++..+..
T Consensus       372 ~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        372 VFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9888887777766654443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.92  E-value=9e-23  Score=205.10  Aligned_cols=323  Identities=11%  Similarity=-0.012  Sum_probs=217.3

Q ss_pred             cccccHHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHH-HHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVV-HFTGAILCFTGYFLVW  110 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~-~~~g~~~~~~g~~~~~  110 (543)
                      .+...|.+.+|+|+|.+|++++....... ..+++.|++.||++          .+|+||||. ++.+.++.++....  
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~-~~~~~~g~~~Dr~~----------~~~~Grr~~~l~~~~~~~~~~~~~--   73 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLVGLPY-SLKFLWSPLVDTVY----------LPFFGRRRSWLVLTQVLLLSLLLI--   73 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHHHHHhccc----------CCCCCccHHHHHHHHHHHHHHHHH--
Confidence            45567899999999999999775553333 34889999999985          234568776 56677777777666  


Q ss_pred             HHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCc---
Q 009130          111 ASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP---  186 (543)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~---  186 (543)
                         .++..+....+.+....++.+++.+...++..+++.|++| ++|+++.++...+..+|.++++.++..+.+..+   
T Consensus        74 ---l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~  150 (356)
T TIGR00901        74 ---LSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANT  150 (356)
T ss_pred             ---HHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence               4444322135667777788888888888888899999997 689999999999999999999988877754433   


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 009130          187 -----STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILL  261 (543)
Q Consensus       187 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (543)
                           |++.+....+..++.++...+                                                      
T Consensus       151 ~~~~~wr~~f~i~ai~~l~~~~~~~~------------------------------------------------------  176 (356)
T TIGR00901       151 GLITLWGYIFFWTALLILPGLLVTLF------------------------------------------------------  176 (356)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHH------------------------------------------------------
Confidence                 665555444432221111000                                                      


Q ss_pred             HHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchh---HHHHHHHH
Q 009130          262 LLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGN---FWFLCIAT  338 (543)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---f~~~~l~~  338 (543)
                               ..++ +++++                  + +++        + .+++.....++.++++.   ++.+.+..
T Consensus       177 ---------~~~e-~~~~~------------------~-~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (356)
T TIGR00901       177 ---------LAKE-PQEDA------------------S-VPK--------P-LTQAVLKPIREFFQRKNMIQALLLLLLI  218 (356)
T ss_pred             ---------hccC-CCccc------------------c-cch--------h-HHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence                     0011 00000                  0 000        0 00111123456666665   66666665


Q ss_pred             HhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHH-HHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Q 009130          339 LCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWS-IWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAI  417 (543)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~-i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~  417 (543)
                      ++..........+.|.+.++.|+++++.+......+ +...++.+++|++.||+++|      +.+..+.++..+...++
T Consensus       219 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~------~~l~~~~~~~~~~~~~~  292 (356)
T TIGR00901       219 VLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL------YALLLFGIVQALTNAGF  292 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHHHHH
Confidence            655555666777888898889999999998887766 57789999999999999754      34455555554444332


Q ss_pred             h-h-----------cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhh
Q 009130          418 A-S-----------GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACP  468 (543)
Q Consensus       418 ~-~-----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  468 (543)
                      . .           ++...+....++.+++.+...+...+++.|.+|++++|+.+|+.+...+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       293 VWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            2 1           1122344455666888888899999999999999999999999876543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.8e-22  Score=191.72  Aligned_cols=372  Identities=13%  Similarity=0.062  Sum_probs=254.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCc-cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccc
Q 009130           10 NSKWIATVASIWIQCSVGTT-YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRF   87 (543)
Q Consensus        10 ~~~w~~~~~~~~~~~~~g~~-~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~   87 (543)
                      ..|.-.+++..++. .+|.. ....++.|.+++.|+++..|.+.+-.++..++. .++|.|.+.+|+|            
T Consensus        10 ~~~~~~v~~t~lFf-l~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~g------------   76 (422)
T COG0738          10 SVKLAFVLLTSLFF-LWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLG------------   76 (422)
T ss_pred             CceeHHHHHHHHHH-HHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhh------------
Confidence            33444333333332 34543 456789999999999999999988888888886 7889999999999            


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHh
Q 009130           88 LRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGF  166 (543)
Q Consensus        88 ~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~  166 (543)
                         .|+.++.|+.++++|..+++=  .+...+   +..++..-++.|.|.+...+.++.+++...| ++...-+++..+.
T Consensus        77 ---yk~gi~lgL~l~avg~~lF~p--Aa~~~~---y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~f  148 (422)
T COG0738          77 ---YKAGIVLGLLLYAVGAALFWP--AASSKS---YGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAF  148 (422)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHhh--hhhhhh---HHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHh
Confidence               999999999999999999642  122232   7778888999999999999999999999997 4677889999999


Q ss_pred             hhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcc
Q 009130          167 VGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLL  246 (543)
Q Consensus       167 ~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (543)
                      +++|.+++|++++.++..+ |.                    ...     +........   +.                
T Consensus       149 n~lGa~~gp~~g~~lils~-~~--------------------~~~-----~~~~~~~~~---~~----------------  183 (422)
T COG0738         149 NGLGAILGPLLGSSLILSG-VA--------------------LTM-----SAAQILAIK---GA----------------  183 (422)
T ss_pred             hhhHHHHHHHHHHHHHHhh-hh--------------------hcc-----CHHHHHHHH---HH----------------
Confidence            9999999999999886322 00                    000     000000000   00                


Q ss_pred             cchhhHH-HHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHh
Q 009130          247 TFSLWAR-IITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQA  325 (543)
Q Consensus       247 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (543)
                      ....+.+ ...++..++++.+..  ...+.|+.++                   .+          ++..+.++....++
T Consensus       184 ~~~~v~~pYl~~~~~lvll~v~~--~~~k~p~~~~-------------------~~----------~~~~~~~~~~~~~l  232 (422)
T COG0738         184 DASSVQFPYLILAGLLVLLAVLI--LLSKLPDLQV-------------------AA----------PSLGASGSAGLSSL  232 (422)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHH--HhccCCcCCc-------------------cc----------ccccccccchHHHH
Confidence            0000000 000001111111110  0111111100                   00          00001111145788


Q ss_pred             hcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHH
Q 009130          326 MCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMV  404 (543)
Q Consensus       326 ~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~  404 (543)
                      +++|.++.-.+..|+..+.....-.+++.++.+ .|.+..+++...+.+..+.++||+++-++..|+..      .+.+.
T Consensus       233 ~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~------~k~La  306 (422)
T COG0738         233 FQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKP------EKYLA  306 (422)
T ss_pred             HhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH------HHHHH
Confidence            999999999999999999999999999999988 79999999999999999999999999888888843      24455


Q ss_pred             HHHHHHHHHHHHHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 009130          405 ITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYD  484 (543)
Q Consensus       405 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~  484 (543)
                      +..++.++.++.....+......+..+.|+.++..+|...+...+..| ++-..+.+++.+ ..+|+. +-|++.|++.|
T Consensus       307 f~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~m-aivGGA-iiP~l~G~i~d  383 (422)
T COG0738         307 FYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVM-AIVGGA-IIPPLQGVIAD  383 (422)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeee-heecch-HHHHHHHHHHH
Confidence            555444444444443333445556778899999999999999999999 555555555544 446664 45889999999


Q ss_pred             hcc
Q 009130          485 RVA  487 (543)
Q Consensus       485 ~~g  487 (543)
                      ..|
T Consensus       384 ~~g  386 (422)
T COG0738         384 MFG  386 (422)
T ss_pred             hhh
Confidence            987

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.91  E-value=4.5e-22  Score=205.10  Aligned_cols=424  Identities=10%  Similarity=0.011  Sum_probs=277.1

Q ss_pred             cccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVW  110 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~  110 (543)
                      .+...+.+..|+|-+ ....|++....++.. ..++.|.++|.||               ||+.++++.++..+|.+.  
T Consensus        63 ~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfG---------------Rr~~~i~g~~l~vvG~Iv--  124 (599)
T PF06609_consen   63 PASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFG---------------RRYFFIIGSLLGVVGSIV--  124 (599)
T ss_pred             cHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhc---------------chHHHHHHHHHHHhHHHH--
Confidence            344557899999865 555577777777765 6778999999999               999999999999999999  


Q ss_pred             HHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhH
Q 009130          111 ASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY  189 (543)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~  189 (543)
                         ++.+++   ...++.+-.+.|+|.|.... ....++|..| |.|+...++.....-....+++.++..+..+.+|||
T Consensus       125 ---~atA~~---~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw  197 (599)
T PF06609_consen  125 ---CATAQN---MNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW  197 (599)
T ss_pred             ---hhcCCc---HHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence               888888   89999999999999887765 4455899999 568887777776665555567777777777789999


Q ss_pred             HHHHHHHHHHHHHHHH-hheeccCCCC-----cccchhhhhHHHHHHHHH-----HHHHHHHHHhhc-ccchhhHHHHHH
Q 009130          190 ILVLALLPTLVSLLFM-SHVRIYGTNS-----VDDKKHLNAFSAVAMTLA-----AYFMVITVMENL-LTFSLWARIITF  257 (543)
Q Consensus       190 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~  257 (543)
                      .+.+..+...++++.. .+..++++.+     .++++....++++|..+.     .+++..+..+.. .+|.+...+..+
T Consensus       198 ~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~l  277 (599)
T PF06609_consen  198 IFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPL  277 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhH
Confidence            9988777656655443 3444333211     112344566777775542     333333333443 466666665444


Q ss_pred             HHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcc-hhHHHHHH
Q 009130          258 IILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCT-GNFWFLCI  336 (543)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~l  336 (543)
                      .+-.+++..+..+   |....                                     .++..-+.+++|+ |.+....+
T Consensus       278 viG~~~Lv~F~~w---E~~~~-------------------------------------~~~Pl~P~~Lf~~~r~~~~~lv  317 (599)
T PF06609_consen  278 VIGFVLLVAFVVW---EWFGA-------------------------------------PKDPLFPHRLFKDRRGFAALLV  317 (599)
T ss_pred             HHHHHHHHHHHHh---hhhcc-------------------------------------CCCCcCCHHHhccchHHHHHHH
Confidence            3333322222211   11000                                     0011223567776 55666666


Q ss_pred             HHHhhhchhhhhhhchHHHHHh-hCCCc---hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHH
Q 009130          337 ATLCGMGSGIATMNNIAQVGES-LHYST---TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSI  412 (543)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~---~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i  412 (543)
                      ..++....++....+.|+.... ++-|+   .+.++.....+++..+|.++.|.+.-+++|-     |+.++++.+++.+
T Consensus       318 i~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~-----Kw~li~~~~~~ta  392 (599)
T PF06609_consen  318 ISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHI-----KWQLIFGSVLMTA  392 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccch-----hHHHHHHHHHHHH
Confidence            6666555566666666665543 34443   3567788888999999999999998877532     3566667767666


Q ss_pred             HHHHHh---hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhh-c--
Q 009130          413 GHIAIA---SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDR-V--  486 (543)
Q Consensus       413 ~~~~~~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~-~--  486 (543)
                      ++.+++   ..+....+...++.|++.|.........+.-..|+++.|++.|+......+|+. ++.-++..++.. .  
T Consensus       393 ~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGs-Ig~aIy~~I~~n~~~~  471 (599)
T PF06609_consen  393 FCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGS-IGYAIYNAIFTNKLPK  471 (599)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhhhhH
Confidence            555554   234555667788889988887766666666678889999999999776666664 332233222110 0  


Q ss_pred             -------------cCCC----------------------C------------ccccccchhHHHHHHHHHHHHHHHHHHH
Q 009130          487 -------------ASGE----------------------D------------HTCYGTHCFMLSFMIMAFVAFFGSLVAF  519 (543)
Q Consensus       487 -------------g~~~----------------------~------------~~~~~~~~~~~~f~~~~~~~~~~~i~~~  519 (543)
                                   |-++                      +            ....+.++|+++|++...+.+++.+.++
T Consensus       472 ~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~  551 (599)
T PF06609_consen  472 ELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAAL  551 (599)
T ss_pred             hHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         0000                      0            0122456899999999999999999888


Q ss_pred             HHhhcch
Q 009130          520 LLFLRTR  526 (543)
Q Consensus       520 ~~~~~~~  526 (543)
                      ++....+
T Consensus       552 fl~d~~~  558 (599)
T PF06609_consen  552 FLGDIDK  558 (599)
T ss_pred             HcCChHH
Confidence            8765433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.91  E-value=9.4e-23  Score=235.08  Aligned_cols=350  Identities=10%  Similarity=0.009  Sum_probs=234.7

Q ss_pred             HHHhhcCCChhhH-HHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHH--HHHHHHHHHHHHHHHH
Q 009130           38 TLKSTQNYDQSTL-ERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFT--GAILCFTGYFLVWASV  113 (543)
Q Consensus        38 ~l~~~~~~s~~~~-~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~--g~~~~~~g~~~~~~~~  113 (543)
                      .+..+.+.+.... ++..+.+.+.+. ++++.|.++||+|               ||+++..  ...+......++    
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~---------------rk~~~~~~~~~~~~~~~~~~~----  101 (1140)
T PRK06814         41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYD---------------KAKLAKILKFAEIGIAALAIY----  101 (1140)
T ss_pred             HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhcc---------------HHHHHHHHHHHHHHHHHHHHH----
Confidence            4444555554454 466666666664 7899999999998               8887533  221222221221    


Q ss_pred             hccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHH
Q 009130          114 VGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILV  192 (543)
Q Consensus       114 ~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~  192 (543)
                      +...++   ++.+++.|+++|++.+...+...+++.+++| ++|++++|+..++.++|.+++|++++.+....+|++.+.
T Consensus       102 ~~~~~s---~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~  178 (1140)
T PRK06814        102 GFHLNS---VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVA  178 (1140)
T ss_pred             HHHHhh---HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            222244   8999999999999999999999999999998 689999999999999999999999999987767766663


Q ss_pred             HHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccccccc
Q 009130          193 LALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAI  272 (543)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (543)
                      ...+..+.+++....                                                                .
T Consensus       179 ~~~~~~~~~~~~~~~----------------------------------------------------------------~  194 (1140)
T PRK06814        179 LLMGIAVLGWLASLF----------------------------------------------------------------I  194 (1140)
T ss_pred             HHHHHHHHHHHHHhh----------------------------------------------------------------C
Confidence            332222211111111                                                                0


Q ss_pred             ccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhch
Q 009130          273 TADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNI  352 (543)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~  352 (543)
                      ++++++.+   +            . .          .+....+.....++.+.+++.+|...+..++.......+..++
T Consensus       195 ~~~~~~~~---~------------~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (1140)
T PRK06814        195 PKTGNAAP---D------------L-K----------IDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQL  248 (1140)
T ss_pred             CCCCCCCC---C------------C-e----------eccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            11100000   0            0 0          0000001112345678889999998888777766666677788


Q ss_pred             HHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-h-----------
Q 009130          353 AQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-S-----------  419 (543)
Q Consensus       353 ~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~-----------  419 (543)
                      |.++++ +|.++.+.+++.+..+++.++|.++.|+++|+..++      ..+..+.++..++.+.+. .           
T Consensus       249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  322 (1140)
T PRK06814        249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL------LYVPIGALLMGLFGLDLAFASSSVPAEPAQL  322 (1140)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee------eeehHHHHHHHHHHHHHHhcccccccccccc
Confidence            988876 599999999999999999999999999999876543      122222222222221111 1           


Q ss_pred             ---------cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC
Q 009130          420 ---------GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE  490 (543)
Q Consensus       420 ---------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~  490 (543)
                               .+.+.+.+..+++|++.+...+...+++.+..|++++|+++|+.++...++. .+++.+.|.+.+...   
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~-~ig~~~~g~l~~~~~---  398 (1140)
T PRK06814        323 KSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFM-VAGTIILALLQALGF---  398 (1140)
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHH-HHHHHHHHHHHHhcc---
Confidence                     3334455667788888888888888999999999999999999999988887 478888888876543   


Q ss_pred             CccccccchhHHHHHHHHHHHHHHHHH
Q 009130          491 DHTCYGTHCFMLSFMIMAFVAFFGSLV  517 (543)
Q Consensus       491 ~~~~~~~~~~~~~f~~~~~~~~~~~i~  517 (543)
                              ++...+++.+.+.++.+++
T Consensus       399 --------~~~~~~~~~~~~~~~~~~~  417 (1140)
T PRK06814        399 --------SIPWIILFIALANLIVAIL  417 (1140)
T ss_pred             --------CHHHHHHHHHHHHHHHHHH
Confidence                    2666666555544444433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=4.6e-21  Score=199.05  Aligned_cols=410  Identities=10%  Similarity=0.011  Sum_probs=241.9

Q ss_pred             cccccHHHHhhcCCChhhHHHHHHHhh-hcccccchhhHhhhh-cccccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQSTLERVAVFKD-MGGSAGILSGLLFSY-VTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLV  109 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~-~~~~~~~~~G~l~d~-~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~  109 (543)
                      .+.+..++++++|+++++.+++...+. +.+...+++|+++|| +|               ||+++.+|.+++++++++ 
T Consensus        34 ~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G---------------~r~~~~~g~~~~~~g~~~-   97 (489)
T PRK10207         34 QGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG---------------TKRTIVLGAIVLAIGYFM-   97 (489)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc---------------hHHHHHHHHHHHHHHHHH-
Confidence            346677889999999999986655544 555577799999999 88               999999999999999999 


Q ss_pred             HHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-C--CCcchhHHHHHhhhhhHHHHHHHHHHhcCCCc
Q 009130          110 WASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-H--YSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP  186 (543)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~--~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~  186 (543)
                          ++++.+.  ...+++.|+++|+|.|...+.....++|+|| +  +|+.+.++...+.++|.+++|.+++++.+..+
T Consensus        98 ----~~~~~~~--~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207         98 ----TGMSLLK--PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             ----HHHhccc--hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                6666552  3445678999999999999999999999997 4  35789999999999999999999999988888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhheeccCCC---Cccc--chhhhh-HHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 009130          187 STYILVLALLPTLVSLLFMSHVRIYGTN---SVDD--KKHLNA-FSAVAMTLAAYFMVITVMENLLTFSLWARIITFIIL  260 (543)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (543)
                      |++.|++..+....+++.....+...++   +++.  .+.... ....++....+.  .....+..   +..........
T Consensus       172 w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~  246 (489)
T PRK10207        172 YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFV--CAWLMHNV---EVANLVLIVLS  246 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHH--HHHHHhhh---hHHHHHHHHHH
Confidence            9988888765555554444444322111   1111  111111 111111111111  11111111   11111111111


Q ss_pred             HHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHH--H
Q 009130          261 LLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIA--T  338 (543)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~--~  338 (543)
                      ++....+    .+++   .+                               .  +        +.+|+|.+-...+.  .
T Consensus       247 ~i~~~~f----~~~~---~~-------------------------------~--~--------~~~r~r~~~~~~l~~~~  278 (489)
T PRK10207        247 IVVTIIF----FREA---FK-------------------------------L--D--------KTGRNKMFVAFVLMLEA  278 (489)
T ss_pred             HHHHHHH----HHHH---hc-------------------------------C--C--------HHHHHHHHHHHHHHHHH
Confidence            1111111    1110   00                               0  0        12233333322211  2


Q ss_pred             HhhhchhhhhhhchHHHHHh-h-----CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcC-CCchHHHHHHHHHHH
Q 009130          339 LCGMGSGIATMNNIAQVGES-L-----HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLG-WARPIFMVITLVAMS  411 (543)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~-~-----g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~-~~r~~~~~~~~~~~~  411 (543)
                      .+.+..+......++.+.++ .     |+. -....+.++..+..++..++.+++.||+++|+. .+...-+.++.++..
T Consensus       279 ~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~-i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~  357 (489)
T PRK10207        279 VVFYILYAQMPTSLNFFAINNVHHEILGFS-INPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCS  357 (489)
T ss_pred             HHHHHHHHHcccHHHHHHHHhccccccceE-ECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence            22222222333445555543 2     222 123445556666676788888999999987631 122223445555555


Q ss_pred             HHHHHH-------hh----cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhh
Q 009130          412 IGHIAI-------AS----GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIG  480 (543)
Q Consensus       412 i~~~~~-------~~----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g  480 (543)
                      ++++.+       ..    .+.+++....++.|+|.+...+.....+.+..|++.+|.+.|+.++...+|+. ++..+..
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~-lg~~l~~  436 (489)
T PRK10207        358 LGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL-LGGYVAT  436 (489)
T ss_pred             HHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            554321       11    12344556677889999999999999999999999999999999988888884 5544444


Q ss_pred             hhhhhccCCCCcccc--ccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          481 RIYDRVASGEDHTCY--GTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       481 ~l~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .....    ++..+.  ....|.+.|...++..+++.++.++..
T Consensus       437 ~~~~~----~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~  476 (489)
T PRK10207        437 FTAVP----DNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV  476 (489)
T ss_pred             Hhccc----cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33110    000000  011266677777766666665554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.90  E-value=1.9e-21  Score=198.67  Aligned_cols=354  Identities=10%  Similarity=-0.024  Sum_probs=222.0

Q ss_pred             ccHHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhcccccccccccccccCCch-HHHHHHHHHHHHHHHHHHHHH
Q 009130           35 YSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPW-VVHFTGAILCFTGYFLVWASV  113 (543)
Q Consensus        35 ~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r-~~~~~g~~~~~~g~~~~~~~~  113 (543)
                      ..|.+-+|.|+|.+|++++...... ..+++++|++.||++          .+++||| +.+.++.++.+++..+     
T Consensus        21 ~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~----------~~~~g~rr~~l~~~~~~~~l~~~~-----   84 (402)
T PRK11902         21 TLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYT----------PPLLGRRRGWLLLTQVGLAASIAA-----   84 (402)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHccc----------ccCCCcchhHHHHHHHHHHHHHHH-----
Confidence            4466666779999999977665554 468999999999993          1222355 4788888888777777     


Q ss_pred             hccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC-CchhHHH
Q 009130          114 VGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG-NPSTYIL  191 (543)
Q Consensus       114 ~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~-~~~~~~~  191 (543)
                      .++.....+++.+++..++.++..+...++..+++.|++| +||+++.++...+.++|..+++.+...+.+. .+|+..+
T Consensus        85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f  164 (402)
T PRK11902         85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY  164 (402)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence            3343221136777778888888888888888999999998 5699999999999999999999988887764 3677666


Q ss_pred             HHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccc
Q 009130          192 VLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVA  271 (543)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (543)
                      .+..+...+..+...+                                                                
T Consensus       165 ~i~a~~~l~~~l~~~~----------------------------------------------------------------  180 (402)
T PRK11902        165 LLMAGLMLAGALTTLW----------------------------------------------------------------  180 (402)
T ss_pred             HHHHHHHHHHHHHHHh----------------------------------------------------------------
Confidence            5444322221111000                                                                


Q ss_pred             cccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhc
Q 009130          272 ITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNN  351 (543)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~  351 (543)
                      .+++ ++++                  +++          ++.+++.....++.+|+|.++.+.+..++..........+
T Consensus       181 ~~e~-~~~~------------------~~~----------~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~  231 (402)
T PRK11902        181 APEP-EVPA------------------RPP----------RSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSL  231 (402)
T ss_pred             cCCC-cccc------------------ccc----------chhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHH
Confidence            1111 0000                  000          0000011234567889999887776655543332222223


Q ss_pred             h-HHHHHhhCCCchhhHHHHHHHH-HHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHH---HHhh-c-Ccch
Q 009130          352 I-AQVGESLHYSTTEINSLISLWS-IWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHI---AIAS-G-FPGN  424 (543)
Q Consensus       352 ~-~~~~~~~g~s~~~a~~~~~~~~-i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~---~~~~-~-~~~~  424 (543)
                      . +.+.++.|+++++.+......+ ++..++.+++|++.||+++|      +.+..+.++..+..+   ++.. . +...
T Consensus       232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~------~~l~~~~~~~~l~~l~~~~~~~~~~~~~~  305 (402)
T PRK11902        232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY------RSLMLFGVLQAVSNLGYWVLAVTPKHLWT  305 (402)
T ss_pred             HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            3 3344557999999999887655 46889999999999999754      344444443333322   2222 2 2232


Q ss_pred             HHHHHH----HHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130          425 LFVGTM----IVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF  500 (543)
Q Consensus       425 ~~~~~~----l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~  500 (543)
                      +.....    ..|++.+...+....++.+.+|.+++    +.......++..+. +.+.|.+.|..|            |
T Consensus       306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~G~l~~~~G------------~  368 (402)
T PRK11902        306 MALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYV-GPTSGYLVEAYG------------W  368 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHhC------------h
Confidence            333332    34455555555566666666665544    44444445565433 347999999998            9


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 009130          501 MLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       501 ~~~f~~~~~~~~~~~i~~~~  520 (543)
                      +..|.+.+.++++++++...
T Consensus       369 ~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        369 PGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            98898888877777665433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.90  E-value=9.8e-22  Score=227.38  Aligned_cols=359  Identities=13%  Similarity=0.064  Sum_probs=237.2

Q ss_pred             ccccHHHHhhcCCChhh--HHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQST--LERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLV  109 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~--~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~  109 (543)
                      ..+.+.+..+++.+.+.  .+++.+.+.++.. ++++.|+++||+|               ||++++.+.++..++.++.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~g---------------rk~~l~~~~~~~~~~~~~~   94 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFS---------------KNRVIRIVKLFEVGLTLLI   94 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccccc---------------HHHHHHHHHHHHHHHHHHH
Confidence            34445666777766544  4566677777765 7889999999999               9999998887766665553


Q ss_pred             HHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC----
Q 009130          110 WASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG----  184 (543)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~----  184 (543)
                      .+  +..+.+   ++.+++.|+++|++.+...++...++++++| ++|++++|+...+.++|.++++.+++.+...    
T Consensus        95 ~~--~~~~~~---~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~  169 (1146)
T PRK08633         95 VL--AYYLGW---FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGN  169 (1146)
T ss_pred             HH--HHHHcc---HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            22  333344   7999999999999999999999999999998 6899999999999999999999998877543    


Q ss_pred             -----CchhHHHHHHHHHH-HHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Q 009130          185 -----NPSTYILVLALLPT-LVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFI  258 (543)
Q Consensus       185 -----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (543)
                           .+|++.+....+.. ++.++                                                       
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  194 (1146)
T PRK08633        170 TPSEILGRIAPAGLVLLAVAVLGLI-------------------------------------------------------  194 (1146)
T ss_pred             cccccccchHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence                 11122211111111 00000                                                       


Q ss_pred             HHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHH
Q 009130          259 ILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIAT  338 (543)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~  338 (543)
                           +.    ...++.++...   +       .  + + .          .+....+.....++.+++++.++...+..
T Consensus       195 -----~~----~~~~~~~~~~~---~-------~--~-~-~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  241 (1146)
T PRK08633        195 -----FA----YRLPKVPAAAP---E-------V--F-D-K----------KKYLFPKLLWRNLKLLRSDRVLWLAIIGL  241 (1146)
T ss_pred             -----HH----hcCcCCCCCCc---c-------c--c-c-c----------cccccHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                 00    00111111000   0       0  0 0 0          00000111123456677888888777766


Q ss_pred             HhhhchhhhhhhchHHHHHh-hCCCch-hhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHH
Q 009130          339 LCGMGSGIATMNNIAQVGES-LHYSTT-EINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIA  416 (543)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~-~g~s~~-~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~  416 (543)
                      ++..........++|.++++ +|++.. +.+++.+...++.+++.+++|+++||++++      ..+.++.++.++++++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~------~~~~~~~~~~~~~~~~  315 (1146)
T PRK08633        242 SYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL------GLVPLGALGLALSLFL  315 (1146)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc------cchhHHHHHHHHHHHH
Confidence            66555555566677777754 699988 899999999999999999999999998643      3444555555555554


Q ss_pred             Hh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcccc
Q 009130          417 IA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCY  495 (543)
Q Consensus       417 ~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~  495 (543)
                      +. ..+.....+..++.|++.+...+...+++.+..|++.+|+++|+.++...++.. +++.+.+.+.. .+.       
T Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~-~~~~~~~~l~~-~~~-------  386 (1146)
T PRK08633        316 LPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGML-LFLALTTLFSG-LGL-------  386 (1146)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHH-HHHHHHHHHHH-hcc-------
Confidence            44 334445566677888888888888888999999999999999999988888873 55555544433 220       


Q ss_pred             ccchhHHHHHHHHHHHHHHHHH
Q 009130          496 GTHCFMLSFMIMAFVAFFGSLV  517 (543)
Q Consensus       496 ~~~~~~~~f~~~~~~~~~~~i~  517 (543)
                         ++...|++.+.+.++..+.
T Consensus       387 ---~~~~~~~~~~~~~~~~~~~  405 (1146)
T PRK08633        387 ---SPAGLFYLIALVTLIGTLY  405 (1146)
T ss_pred             ---CHHHHHHHHHHHHHHHHHH
Confidence               2445566555554444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.90  E-value=3.1e-24  Score=207.99  Aligned_cols=370  Identities=12%  Similarity=-0.041  Sum_probs=236.9

Q ss_pred             chhhHHHHHHHHHHHHHc-CCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccccc
Q 009130            9 TNSKWIATVASIWIQCSV-GTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTR   86 (543)
Q Consensus         9 ~~~~w~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~   86 (543)
                      .++.++.++...++.+.. ...|...-..+.++++||++++..+++...+.+... ++++.|+++|||+           
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryN-----------   96 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYN-----------   96 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcC-----------
Confidence            344555555555555553 457777778899999999999999988888777765 8999999999999           


Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHH
Q 009130           87 FLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKG  165 (543)
Q Consensus        87 ~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~  165 (543)
                          ||.++.+|..+++++.++     +++...   +|++.++|.+.|+|++...+.+..+++|.|| ++|++++++++.
T Consensus        97 ----R~~v~~vG~~iW~~Av~~-----~~fs~~---Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~  164 (493)
T KOG1330|consen   97 ----RKRVIAVGIFIWTLAVFA-----SGFSNH---FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYF  164 (493)
T ss_pred             ----cceEEeeHHHHHHHHHHH-----HHHHHH---HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhh
Confidence                999999999999999999     777743   9999999999999999999999999999999 589999999999


Q ss_pred             hhhhhHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHH-HHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHh
Q 009130          166 FVGLSGAVLTQVYKTVCNGN-PSTYILVLALLPTLVS-LLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVME  243 (543)
Q Consensus       166 ~~~lg~~i~~~l~~~l~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (543)
                      +...|..+|-++++.+-+.+ +|||.+....+..++. ++..++.                                   
T Consensus       165 ~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~-----------------------------------  209 (493)
T KOG1330|consen  165 AIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV-----------------------------------  209 (493)
T ss_pred             hcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc-----------------------------------
Confidence            99999999977777765544 3776665444333222 1111111                                   


Q ss_pred             hcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHH
Q 009130          244 NLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLL  323 (543)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (543)
                                                   ++++++..+  +              .+.+.      +...+..+..+..+
T Consensus       210 -----------------------------~eP~rga~~--~--------------~~~~~------~~~~~~ts~~kDl~  238 (493)
T KOG1330|consen  210 -----------------------------REPERGARD--E--------------VDGEN------KMVKPFTSVWKDLK  238 (493)
T ss_pred             -----------------------------cCccccccc--c--------------cccCC------cCCCCccchHHHHH
Confidence                                         121111110  0              00000      00011112222334


Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHH----hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCC-C
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGE----SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGW-A  398 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~----~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~-~  398 (543)
                      .+.|++.+....+......+..-.+..|.|.+..    -.|++..+...+..+...++.+|.+++|.++||+.+.++- .
T Consensus       239 ~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~  318 (493)
T KOG1330|consen  239 VLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSG  318 (493)
T ss_pred             HHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhccccc
Confidence            4444444433333332222222234444454432    3477877777888899999999999999999998764321 2


Q ss_pred             chHHHHHHHH----HHHHHHHHHh-hcC-cchHHHHHHHHHhhhhhh-hhhHHHHHHhhcCCcchhhHHHHHHhhhhhhh
Q 009130          399 RPIFMVITLV----AMSIGHIAIA-SGF-PGNLFVGTMIVGVCYGSQ-WSLMPTITSEIFGVRHMGTIFNTISIACPVGS  471 (543)
Q Consensus       399 r~~~~~~~~~----~~~i~~~~~~-~~~-~~~~~~~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~  471 (543)
                      |...-.....    ..+..+.+.. ..+ .....+..+++|...... ++....+..++.|+++|.+++++-.+...+.+
T Consensus       319 ~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fg  398 (493)
T KOG1330|consen  319 TLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFG  398 (493)
T ss_pred             chhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhc
Confidence            2222111111    1122222222 122 222333444555544332 23344567889999999999999865554433


Q ss_pred             hhhhhhhhhhhhhhcc
Q 009130          472 YICSVRIIGRIYDRVA  487 (543)
Q Consensus       472 ~i~~~~l~g~l~~~~g  487 (543)
                      -.-+|++.|.+.|+.-
T Consensus       399 d~~~p~ivGilsd~l~  414 (493)
T KOG1330|consen  399 DAASPYIVGILSDKLR  414 (493)
T ss_pred             cCCCcceehhHHHHhh
Confidence            3456779999988754

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.90  E-value=2.1e-21  Score=198.05  Aligned_cols=362  Identities=11%  Similarity=0.015  Sum_probs=231.0

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      +.+.+++++++|+++.+.+++.+...+... .+++.|+++||+|               ||+.+..+.+..+++...+..
T Consensus        23 ~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~g---------------rr~~~~~~~~~~~~~~~~~~~   87 (396)
T TIGR00882        23 PFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLG---------------LKKHLLWIISGLLVLFAPFFI   87 (396)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------cHHHHHHHHHHHHHHHHHHHH
Confidence            344456778899999999977666666665 7899999999999               999998877666554443211


Q ss_pred             HHhccCCCC--ChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhH
Q 009130          112 SVVGLLPRP--VPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY  189 (543)
Q Consensus       112 ~~~~~~~~~--~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~  189 (543)
                        ....+..  .....+++.|++.|++.+...+.......+. .++++...|......++|.++++++++.+.+ .+|++
T Consensus        88 --~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~  163 (396)
T TIGR00882        88 --YVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV-SRNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQI  163 (396)
T ss_pred             --HHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh-hhhcccccchhhhhcccHHHHHHHHHhhhhc-cCchH
Confidence              1111100  0123345668888888877766665555443 2345667788888889999999988776643 35665


Q ss_pred             HHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccc
Q 009130          190 ILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLR  269 (543)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (543)
                      .+....+..++..+.....                                                             
T Consensus       164 ~f~~~~~~~~~~~~~~~~~-------------------------------------------------------------  182 (396)
T TIGR00882       164 VFWLGSGFALILMLLLMFA-------------------------------------------------------------  182 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------------------------------------------------------------
Confidence            5544333222211111110                                                             


Q ss_pred             cccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhh
Q 009130          270 VAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATM  349 (543)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~  349 (543)
                         ++++++++   +.     +    ++ .++         ++  ++.+..+.++.+|+|.+|.+.+..+..........
T Consensus       183 ---~~~~~~~~---~~-----~----~~-~~~---------~~--~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  235 (396)
T TIGR00882       183 ---KPKAPSSA---TV-----A----NA-LGA---------NA--SAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFD  235 (396)
T ss_pred             ---CCCCchhh---hh-----h----cc-ccc---------cc--CCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence               01100000   00     0    00 000         00  00111235788899998877666554443333444


Q ss_pred             hchHHHHHhh----CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcch
Q 009130          350 NNIAQVGESL----HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGN  424 (543)
Q Consensus       350 ~~~~~~~~~~----g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~  424 (543)
                      .+.+.+.++.    +.+....+...++..+...++.+..|++.||+++|      +.+.++.++.++...+.. .++++.
T Consensus       236 ~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~------~~l~~~~~l~~l~~~~~~~~~~~~~  309 (396)
T TIGR00882       236 QQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK------NALLIAGTIMSVRIIGSSFATTALE  309 (396)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHhcCChHH
Confidence            4566666553    45566778888888899999999999999999654      455666666666555544 455666


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHH-HHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHH
Q 009130          425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNT-ISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLS  503 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~  503 (543)
                      +++..++.|++.+........+..+..+++.+++..+. .+....+|+ .++|.+.|++.|..|            |+.+
T Consensus       310 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~-~~~~~l~G~l~~~~G------------~~~~  376 (396)
T TIGR00882       310 VVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAM-IFLSTLAGNMYDSIG------------FQGA  376 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHH-HHHHHhHHHHHHhcc------------cHHH
Confidence            66667777777665554455567777888888887766 567778888 488899999999887            9999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 009130          504 FMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       504 f~~~~~~~~~~~i~~~~  520 (543)
                      |++.+++.++..++..+
T Consensus       377 f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       377 YLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999888877776554

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.89  E-value=5.4e-21  Score=197.80  Aligned_cols=340  Identities=10%  Similarity=-0.014  Sum_probs=217.2

Q ss_pred             cccHHHHhhcCCChhhHHHHHHHhhhcc-cccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHH
Q 009130           34 IYSSTLKSTQNYDQSTLERVAVFKDMGG-SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWAS  112 (543)
Q Consensus        34 ~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~  112 (543)
                      .+.+.+.+++|+++.+.+++.+...+.. +..++.|.++||.+    +|+||      ||+.++.+.+.++++.+++   
T Consensus        21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~----~r~Gr------rr~~i~~~~~~~~i~~~~~---   87 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTR----TRWGK------FRPWLLIGAIPFSIVLVLL---   87 (437)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCC----CCCCC------cchhHHHhHHHHHHHHHHH---
Confidence            3557788899999999996666655555 58999999999976    34444      4667888888888887773   


Q ss_pred             HhccCCCC---ChHHHHHHHHHHHhcCcchhhhhHHHHHhhhc-C-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC----
Q 009130          113 VVGLLPRP---VPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNF-G-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN----  183 (543)
Q Consensus       113 ~~~~~~~~---~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~f-p-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~----  183 (543)
                        ...++.   .....+++.+++.+++.+...++..+...+.. + ++|++..++...+..+|..+.+.+...+..    
T Consensus        88 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~  165 (437)
T TIGR00792        88 --FTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG  165 (437)
T ss_pred             --HhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              333321   01455666788888888877776667777776 3 679999999888888887777655443321    


Q ss_pred             ---CCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 009130          184 ---GNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIIL  260 (543)
Q Consensus       184 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (543)
                         ...|++.+.+..+..                                                              
T Consensus       166 ~~~~~g~~~~~~i~~~l~--------------------------------------------------------------  183 (437)
T TIGR00792       166 GDDKFGWFMFALVLALIG--------------------------------------------------------------  183 (437)
T ss_pred             CcccccHHHHHHHHHHHH--------------------------------------------------------------
Confidence               012222211111110                                                              


Q ss_pred             HHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHh
Q 009130          261 LLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLC  340 (543)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~  340 (543)
                       ++.........++++++.+                    +++       ++  +.+.....++.+++|.++.+.+..++
T Consensus       184 -~~~~~~~~~~~~e~~~~~~--------------------~~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~  233 (437)
T TIGR00792       184 -VVSLIICFFGTKERYSEIP--------------------KNI-------EK--KLSLKQIFKALFKNDQLLILCLAYLF  233 (437)
T ss_pred             -HHHHHHHHcCCEecCCCCC--------------------ccc-------cc--CCCHHHHHHHHhCCHHHHHHHHHHHH
Confidence             0000111111111110000                    000       00  00112335677899999988877776


Q ss_pred             hhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 009130          341 GMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS  419 (543)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~  419 (543)
                      ............+.+.++ .+ ++.+.+.+..+..++.+++.+++++++||+++|      +.+..+.++.+++.+.+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~------~~~~~~~~~~~~~~~~~~~  306 (437)
T TIGR00792       234 YNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK------ILFAGGILLMVLGYLIFFF  306 (437)
T ss_pred             HHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHH
Confidence            655544444444444443 24 456677777888899999999999999999654      5666666666666554442


Q ss_pred             --cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcC-------CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccC
Q 009130          420 --GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFG-------VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS  488 (543)
Q Consensus       420 --~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~  488 (543)
                        .+.....+..++.|++.+...+...++++|..+       +++.|.++|+.+....+|.. +++.+.|.+.|..|.
T Consensus       307 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~-lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       307 AGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQA-LAGFLVGLILGIIGY  383 (437)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence              233344555667788888888888888888754       56689999999999999884 888899999887763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.89  E-value=3.2e-20  Score=192.68  Aligned_cols=410  Identities=10%  Similarity=-0.029  Sum_probs=244.4

Q ss_pred             cccccHHHHhh--cCCChhhHHHHHHHhhhcc-cccchhhHhhhh-cccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKST--QNYDQSTLERVAVFKDMGG-SAGILSGLLFSY-VTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        32 ~~~~~~~l~~~--~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~-~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      .+.+..+++++  +|+++.+.+.+.+.+.... ...+++|+++|| +|               ||+++.++.++.+++.+
T Consensus        30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G---------------~~~~l~~~~~~~~~g~~   94 (475)
T TIGR00924        30 QGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG---------------TKKTMVLGGIVLMLGHF   94 (475)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcc---------------hHHHHHHHHHHHHHHHH
Confidence            34455566766  9999999996655555554 478899999999 78               99999999999999998


Q ss_pred             HHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CC---CcchhHHHHHhhhhhHHHHHHHHHHhcC
Q 009130          108 LVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HY---SGTIVGILKGFVGLSGAVLTQVYKTVCN  183 (543)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~---rg~~~gi~~~~~~lg~~i~~~l~~~l~~  183 (543)
                      +     .+++++   ++.+++.|++.|+|.|...+.....+++++| ++   |+.+.++...+.++|.++++++.+.+.+
T Consensus        95 ~-----~~~~~~---~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924        95 M-----LAMSIY---PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             H-----HHhccc---HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            8     555555   6778889999999999999999999999997 33   8889999999999999999999999887


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHhheec-cCCCCcccc----hhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Q 009130          184 GNPSTYILVLALLPTLVSLLFMSHVRI-YGTNSVDDK----KHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFI  258 (543)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (543)
                      ..+|++.+....+..+++++...+.++ .++.+.+.+    +..+....                        .......
T Consensus       167 ~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~  222 (475)
T TIGR00924       167 NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKL------------------------LLALLAA  222 (475)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHH------------------------HHHHHHH
Confidence            778888887766555555444433332 211110000    00000000                        0000000


Q ss_pred             HHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHH
Q 009130          259 ILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIAT  338 (543)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~  338 (543)
                      +........   ..++. ....            .....    ..-..-....+. ..++.....+..|...+..+++..
T Consensus       223 ~~~~~~~~~---~~~~~-~~~~------------~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~~~  281 (475)
T TIGR00924       223 LALVFFCAW---LMHHV-VIAN------------ILLMT----VTLAVIIFFFRL-AFKPRLDAVARNKMYAYIVLFLEA  281 (475)
T ss_pred             HHHHHHHHH---HHhcc-HHHH------------HHHHH----HHHHHHHHHHHH-HHhccCCHHHHhHHHHHHHHHHHH
Confidence            000000000   00000 0000            00000    000000000000 000000001111223344444444


Q ss_pred             HhhhchhhhhhhchHHHHHh-hCCCc----hhhHHHHHHHHHHHhhhccccccchhhhhhhcC-CCchHHHHHHHHHHHH
Q 009130          339 LCGMGSGIATMNNIAQVGES-LHYST----TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLG-WARPIFMVITLVAMSI  412 (543)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~-~g~s~----~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~-~~r~~~~~~~~~~~~i  412 (543)
                      .+.+..+....+.++.+.++ .+.+.    ...+++.++..+..++..++..++-.|..||.. .....-+.++.++..+
T Consensus       282 ~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~  361 (475)
T TIGR00924       282 VVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGA  361 (475)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            44444333344445555543 22221    236677778887777777765555555554311 1111113566777666


Q ss_pred             HHHHHh----------hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          413 GHIAIA----------SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       413 ~~~~~~----------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      ++..+.          ..+.+++.+..++.++|.....+...+++.+..|++.+|...|+......+|.. +++.+....
T Consensus       362 ~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~-l~~~~~~~~  440 (475)
T TIGR00924       362 SFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSL-LGGYLATFG  440 (475)
T ss_pred             HHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            665543          134566777888999999999999999999999999999999999999999885 666666666


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       483 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .+..+            +...|...++.+++..++.+++.
T Consensus       441 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       441 AVPQG------------VTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             hcccc------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence            55544            66666666666665555544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=6.3e-21  Score=178.57  Aligned_cols=407  Identities=12%  Similarity=0.020  Sum_probs=257.2

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      .-.+.+.|.+.+.+|.+..|..+++.....+.. .+..+|.++|++|               |||.+.+......+...+
T Consensus        95 m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~g---------------rr~~f~~T~l~t~v~~~i  159 (528)
T KOG0253|consen   95 MLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIG---------------RRKGFNLTFLVTGVFGVI  159 (528)
T ss_pred             HHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhh---------------cchhhhhhHHHHHHHHHh
Confidence            345667789999999999999999888888886 4668999999998               999999888888888888


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           ++..+|   +..++++|.+.|+|.|. .|...++-.+.-| .+|++-+=.. ..+.+|.++...+.-..+.+-+|
T Consensus       160 -----s~~spn---f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gw  229 (528)
T KOG0253|consen  160 -----SGASPN---FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGW  229 (528)
T ss_pred             -----hcCCCC---eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhH
Confidence                 888887   79999999999999998 7777777778778 5788766555 88899999998888888888899


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ||.++....|..+......++++.|.-.--+.+...+...+=.                                     
T Consensus       230 r~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~k-------------------------------------  272 (528)
T KOG0253|consen  230 RYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHK-------------------------------------  272 (528)
T ss_pred             HHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHH-------------------------------------
Confidence            9999988888877766666666655422111111111111100                                     


Q ss_pred             cccccccccccccCCCC-CCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhh
Q 009130          268 LRVAITADREDAMTSPK-LSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI  346 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~  346 (543)
                            -.....++.+- ...++.....++|+.+-++......++.........++.-..++-..|.++.   ...+.++
T Consensus       273 ------iArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwf---gnafsyy  343 (528)
T KOG0253|consen  273 ------IARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWF---GNAFSYY  343 (528)
T ss_pred             ------HHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHH---hhHHHHH
Confidence                  00000000000 0000000001111111000000000000000000011111111222333333   2333333


Q ss_pred             hhhhchHHHHHhh--------------------CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH
Q 009130          347 ATMNNIAQVGESL--------------------HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT  406 (543)
Q Consensus       347 ~~~~~~~~~~~~~--------------------g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~  406 (543)
                      +.+-......+..                    ..+......-..+..+..+-|.++.+++.||+|||      ..++.+
T Consensus       344 g~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRK------kTMal~  417 (528)
T KOG0253|consen  344 GSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRK------KTMALS  417 (528)
T ss_pred             HHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcch------hHHHHH
Confidence            3322222222210                    11222222334567788889999999999999654      788889


Q ss_pred             HHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 009130          407 LVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDR  485 (543)
Q Consensus       407 ~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~  485 (543)
                      +++.+++++++. ..+.....+..+..-++..+.+...+.+++|++|...|++..|.....+.+|+ ++.|+++ ...+.
T Consensus       418 l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIgg-I~~p~iA-~~~e~  495 (528)
T KOG0253|consen  418 LILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGG-IFSPVIA-MRAEL  495 (528)
T ss_pred             HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhh-hhhhHHH-HHhcc
Confidence            888888877655 45555555555555566777788889999999999999999999999999999 5888777 44444


Q ss_pred             ccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 009130          486 VASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRF  528 (543)
Q Consensus       486 ~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~  528 (543)
                      .-            + .+..+...+++++.+...++..|+|.+
T Consensus       496 s~------------s-l~i~vy~~~~ilagIavcffPiEtkGR  525 (528)
T KOG0253|consen  496 ST------------S-LPIFVYGALFILAGIAVCFFPIETKGR  525 (528)
T ss_pred             ce------------e-ehHHHHHHHHHHHHHHheeeeeccCCC
Confidence            32            2 455677777888888888888887764

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.88  E-value=2.5e-21  Score=206.60  Aligned_cols=292  Identities=13%  Similarity=0.024  Sum_probs=187.7

Q ss_pred             cccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVW  110 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~  110 (543)
                      .+...+.++++|+++..+.+++.+.+.+++. ..++.|++.||+|               ||+.+.+|.+++++|.++++
T Consensus        52 ~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~---------------r~~~i~~g~ll~~lg~ll~a  116 (633)
T TIGR00805        52 VNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLH---------------RPIVIGIGCAIMGLGSFLLS  116 (633)
T ss_pred             HHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccC---------------cceEEEecHHHHHHHHHHHh
Confidence            4567799999999999999988888888886 6789999999998               99999999999999999954


Q ss_pred             HHH--hc--------------------c---C-----------------C--CCChHHHHHHHHHHHhcCcchhhhhHHH
Q 009130          111 ASV--VG--------------------L---L-----------------P--RPVPVPLMCLFIFTAAHAQNFFNTGNIV  146 (543)
Q Consensus       111 ~~~--~~--------------------~---~-----------------~--~~~~~~~~~~~r~l~G~g~g~~~~~~~~  146 (543)
                      +.-  .+                    .   .                 .  +. .+..+++.|+++|+|.+..++....
T Consensus       117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~GiG~~~~~~~~~~  195 (633)
T TIGR00805       117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESL-MWLLFLVSQLLRGIGATPIFPLGIS  195 (633)
T ss_pred             ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCc-eehhhHHHHHHHhccCCcchhcCch
Confidence            421  00                    0   0                 0  10 2456778999999999999999999


Q ss_pred             HHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHhheeccC-CCCcccchh--
Q 009130          147 TGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGN-PSTYILVLALLPTLVSLLFMSHVRIYG-TNSVDDKKH--  221 (543)
Q Consensus       147 ~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--  221 (543)
                      ++.||+| ++|++++|+...+..+|+++++.+++.+.+.. .|+.                  ....+ .-.+++.+|  
T Consensus       196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~------------------~~~~~~~l~~~dprWiG  257 (633)
T TIGR00805       196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGS------------------VNTEDVILTPTDPRWIG  257 (633)
T ss_pred             hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhccccccc------------------CCCCCCCCCCCCccHHH
Confidence            9999998 68999999999999999999998888764311 0000                  00000 000011111  


Q ss_pred             --hhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccC
Q 009130          222 --LNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELA  299 (543)
Q Consensus       222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (543)
                        +..|.+.+                             ++.++..+++....++.|++.+. ++.+..+.+. .+    
T Consensus       258 aWwl~Fli~g-----------------------------~l~~l~~v~l~~~p~~lp~~~~~-~~~~~~~~~~-~~----  302 (633)
T TIGR00805       258 AWWIGFLICG-----------------------------GVALLTSIPFFFFPKALPKEGKR-VNVDVHETEK-LE----  302 (633)
T ss_pred             HHHHHHHHHH-----------------------------HHHHHHHHHHHhCccccCCcccc-cchhhhhhhc-cc----
Confidence              11111111                             11111111111111111111000 0000000000 00    


Q ss_pred             CCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHH-HH
Q 009130          300 DDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSI-WN  377 (543)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i-~~  377 (543)
                      +.+++..  .......++.....+++++||.++...+..++.....+.+..++|.++++ +|+++.+++.+.++..+ +.
T Consensus       303 ~~~~~~~--~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~  380 (633)
T TIGR00805       303 KSEDKSR--KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAA  380 (633)
T ss_pred             ccccccc--hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHH
Confidence            0000000  00000111122446788999999999999988888888899999999975 69999999999988776 56


Q ss_pred             hhhccccccchhhhhhh
Q 009130          378 FFGRFGAGYGSDVFLHK  394 (543)
Q Consensus       378 ~ig~~~~G~lsD~~~~~  394 (543)
                      ++|.+++|+++||++.+
T Consensus       381 ~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       381 GLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHhhhhheeeeeccc
Confidence            79999999999999754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.88  E-value=8.2e-20  Score=185.94  Aligned_cols=365  Identities=11%  Similarity=-0.041  Sum_probs=227.5

Q ss_pred             HHHcCCccc-cccccHHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHH
Q 009130           23 QCSVGTTYT-FSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAIL  101 (543)
Q Consensus        23 ~~~~g~~~~-~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~  101 (543)
                      .+..|..+. ...+.|.+.+|.|.+.++++.++.. .+.....++++++.||+.          .||+|+||..++...+
T Consensus        10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~-~l~~~~~~l~~p~~~~~~----------~~~~g~r~~~i~~~~~   78 (390)
T TIGR02718        10 YLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLV-GLPWVVKFLWAPLVDNWW----------SWRLGRRRSWVLPMQC   78 (390)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHhccc----------cccCCcchhHHHHHHH
Confidence            344555543 3456788888999999999966322 233445667777777753          4667788887665533


Q ss_pred             HHH-HHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHH
Q 009130          102 CFT-GYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYK  179 (543)
Q Consensus       102 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~  179 (543)
                      ... ....++  ......+.  ...++..-.+.++..+...+..-....++.+ ++++...+....+..+|.++++.+..
T Consensus        79 ~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~  154 (390)
T TIGR02718        79 LVSACLASLA--LVGPDVAG--AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTL  154 (390)
T ss_pred             HHHHHHHHHH--cCCcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222 122211  01122221  2333334444555666666666667778887 45688888888888899999988777


Q ss_pred             HhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Q 009130          180 TVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFII  259 (543)
Q Consensus       180 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (543)
                      .+.+..+|+..+....+...+..+...+                                                    
T Consensus       155 ~l~~~~gw~~~f~~~a~l~~~~~~~~~~----------------------------------------------------  182 (390)
T TIGR02718       155 VLFGKFGQRPAFLLVACVPLASLVCVLW----------------------------------------------------  182 (390)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHH----------------------------------------------------
Confidence            7776666776555444322221111000                                                    


Q ss_pred             HHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHH
Q 009130          260 LLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATL  339 (543)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~  339 (543)
                                  .++++++++                  +          ++    +.+..+.++.+|+|.+|...+..+
T Consensus       183 ------------~~~~~~~~~------------------~----------~~----~~~~~~~~~~l~~~~~~~~~~~~~  218 (390)
T TIGR02718       183 ------------LKDRAVASP------------------E----------AP----LARRASLFRFFRRPLAWSLLALAL  218 (390)
T ss_pred             ------------cCCCCcCcc------------------c----------cc----hhhHHHHHHHHcCcCHHHHHHHHH
Confidence                        001100000                  0          00    001123567888998887777766


Q ss_pred             hhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHH-HHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH-HHHH
Q 009130          340 CGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSI-WNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG-HIAI  417 (543)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i-~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~-~~~~  417 (543)
                      +..........+.+.+.+|.|+++++.+.......+ ...++.++.|++.||+++|      +.+..+.+...+. ...+
T Consensus       219 l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~------~~l~~~~~~~~~~~~~~~  292 (390)
T TIGR02718       219 LSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW------RTFILGVGLAGSLALLWF  292 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHH
Confidence            665555556667788888999999999999888764 6667899999999999754      3444444433222 2211


Q ss_pred             h--h----cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCC-cchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC
Q 009130          418 A--S----GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGV-RHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE  490 (543)
Q Consensus       418 ~--~----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~  490 (543)
                      .  .    .+....+...++.+++.+..++...+.+.+..++ +++++.+++.+....+|. .++|.+.|.+.|..|   
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~-~~g~~~~G~l~~~~G---  368 (390)
T TIGR02718       293 AQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE-LIASSIAGYLTDRFG---  368 (390)
T ss_pred             HHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc---
Confidence            1  1    1111223333344566677767777777777776 789999999999999998 489999999999887   


Q ss_pred             CccccccchhHHHHHHHHHHHHHHHHH
Q 009130          491 DHTCYGTHCFMLSFMIMAFVAFFGSLV  517 (543)
Q Consensus       491 ~~~~~~~~~~~~~f~~~~~~~~~~~i~  517 (543)
                               |+..|++.+++.+++.++
T Consensus       369 ---------~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       369 ---------YAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             ---------cHHHHHHHHHHHHHHHHH
Confidence                     888888877766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.7e-21  Score=184.84  Aligned_cols=344  Identities=14%  Similarity=0.103  Sum_probs=235.1

Q ss_pred             hhcCCChhhHHHHHHHhhhcc-cccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 009130           41 STQNYDQSTLERVAVFKDMGG-SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPR  119 (543)
Q Consensus        41 ~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~  119 (543)
                      ++.+-+++++|++.....+.. ...++.|.+.||+|               +|..+++|..++...+++     .++..+
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iG---------------y~ipm~~Gl~vmf~sTil-----Fafg~s  158 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIG---------------YKIPMVAGLFVMFLSTIL-----FAFGNS  158 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhc---------------cccHHHHHHHHHHHHHHH-----HHHcch
Confidence            456778888996655555555 48999999999999               999999999999999999     445554


Q ss_pred             CChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCC--CCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 009130          120 PVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGH--YSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLP  197 (543)
Q Consensus       120 ~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~--~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~  197 (543)
                         ++.+++.|.+||+|.++..++..++++|.||+  +||+++|+..++.++|-.++|++++.+.+.-+-...|++..+.
T Consensus       159 ---y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v  235 (464)
T KOG3764|consen  159 ---YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIV  235 (464)
T ss_pred             ---hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHH
Confidence               89999999999999999999999999999983  5899999999999999999999998875432222222211111


Q ss_pred             HHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccc
Q 009130          198 TLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADRE  277 (543)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (543)
                      .++-                                                            ..+.+..   . ++.+
T Consensus       236 ~Lld------------------------------------------------------------~~L~l~v---i-~p~~  251 (464)
T KOG3764|consen  236 LLLD------------------------------------------------------------GALQLLV---I-EPTE  251 (464)
T ss_pred             HHHH------------------------------------------------------------HHHHHhe---e-Cccc
Confidence            1110                                                            0011110   0 1111


Q ss_pred             cccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHH
Q 009130          278 DAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGE  357 (543)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~  357 (543)
                      +.+                              +   ...+....++++++|..+................-..++.+..
T Consensus       252 ~~~------------------------------~---~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~  298 (464)
T KOG3764|consen  252 MDP------------------------------D---STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWML  298 (464)
T ss_pred             cCc------------------------------c---ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHH
Confidence            000                              0   0112244588899999888777665555444445566666554


Q ss_pred             h-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhh
Q 009130          358 S-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVC  435 (543)
Q Consensus       358 ~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~  435 (543)
                      + ...+.-+.+..+....+...+|..++|.+.||+++.    |....+.+++...+.+.... .++...+++-.+..+++
T Consensus       299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~----~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~  374 (464)
T KOG3764|consen  299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL----RWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFG  374 (464)
T ss_pred             HhccCCCcceeeeecccccchhccCchHHHHHHhcCch----hHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHH
Confidence            4 453334888888899999999999999999999752    32223333333333332222 34444566666666666


Q ss_pred             hhhhhhhHHHHHHhhcCCc------chhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHH
Q 009130          436 YGSQWSLMPTITSEIFGVR------HMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAF  509 (543)
Q Consensus       436 ~g~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~  509 (543)
                      .+.+-+........+...+      .+|.++++...+..+|-. +||.++|.+.+..|            |+|...+.++
T Consensus       375 i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a-~GP~~gg~iv~~iG------------F~wl~~iig~  441 (464)
T KOG3764|consen  375 IGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYA-IGPTFGGSLVEAIG------------FEWLMTIIGI  441 (464)
T ss_pred             HHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhh-ccccccchheeehh------------HHHHHHHHHH
Confidence            6665544444444444332      578999999999999984 89999999999998            9998888888


Q ss_pred             HHHHHHHHHHHH
Q 009130          510 VAFFGSLVAFLL  521 (543)
Q Consensus       510 ~~~~~~i~~~~~  521 (543)
                      ..++-.-+..++
T Consensus       442 ~n~iyapvl~ll  453 (464)
T KOG3764|consen  442 LNLIYAPVLLLL  453 (464)
T ss_pred             HHHHHHHHHHHH
Confidence            777765554443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.86  E-value=2.2e-19  Score=187.48  Aligned_cols=408  Identities=11%  Similarity=0.008  Sum_probs=235.2

Q ss_pred             cccHHHHhhcCCChhhHHHHHHHhhhc-ccccchhhHhhhh-cccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           34 IYSSTLKSTQNYDQSTLERVAVFKDMG-GSAGILSGLLFSY-VTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        34 ~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~G~l~d~-~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      .+..++++++|+++++.+++...+... +...++.|+++|| +|               ||+++..+.+++++++.+   
T Consensus        43 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G---------------~r~~~~~g~~~~~ig~~l---  104 (500)
T PRK09584         43 IMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLG---------------TKRVIMLGAIVLAIGYAL---  104 (500)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------hHHHHHHHHHHHHHHHHH---
Confidence            455677899999999988554444333 3345689999999 58               999999999999999888   


Q ss_pred             HHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCC-C--CcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          112 SVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGH-Y--SGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~-~--rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                        ++++++.  .+.+.+.|+++|+|.|...+....+++++||+ +  |+.++++...+.++|.+++|.+.+++.+..+|+
T Consensus       105 --~~~~~~~--~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~  180 (500)
T PRK09584        105 --VAWSGHD--AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS  180 (500)
T ss_pred             --HHHhccc--HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence              5555432  56677889999999999888888899999974 2  456789999999999999999999998888899


Q ss_pred             HHHHHHHHHHHHHHHHHhheec-cCCC---Cccc-chhhhh-HHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 009130          189 YILVLALLPTLVSLLFMSHVRI-YGTN---SVDD-KKHLNA-FSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLL  262 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (543)
                      +.+..+.+...++++...+.+. .+++   ++.+ .+.... ....++....+.... ...+. +   ..........+.
T Consensus       181 ~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~---~~~~~~~~~~~~  255 (500)
T PRK09584        181 VAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATW-LLHNQ-E---IARMALGVVALG  255 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHH-HHhcc-h---HHHHHHHHHHHH
Confidence            9888877665655444333222 2211   1111 111111 111111111111100 00010 0   000000000000


Q ss_pred             HhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhh
Q 009130          263 LLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGM  342 (543)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~  342 (543)
                      ....    ..++.                                    .+.+        +.-+++. +..... ++..
T Consensus       256 ~~~~----~~~~~------------------------------------~~~~--------~~~~~~~-~~~~~~-~~~~  285 (500)
T PRK09584        256 IVVI----FGKEA------------------------------------FAMK--------GAARRKM-IVAFIL-MLEA  285 (500)
T ss_pred             HHHH----HHHHH------------------------------------hhcC--------HHHHHHH-HHHHHH-HHHH
Confidence            0000    00000                                    0000        0001111 111111 1111


Q ss_pred             chhhhhhhchHHHHHh---hCCCc------hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130          343 GSGIATMNNIAQVGES---LHYST------TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG  413 (543)
Q Consensus       343 ~~~~~~~~~~~~~~~~---~g~s~------~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~  413 (543)
                      ..++......+..+..   .+.+.      ...+++.++..+...+..++.+++-+|.++|.  +....+.++.++..++
T Consensus       286 i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~  363 (500)
T PRK09584        286 IIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGA  363 (500)
T ss_pred             HHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHH
Confidence            2222333333433322   11111      23556666777676677777666666665553  3445667777777777


Q ss_pred             HHHHhh--c--------CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhh
Q 009130          414 HIAIAS--G--------FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIY  483 (543)
Q Consensus       414 ~~~~~~--~--------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~  483 (543)
                      ++.+..  .        +..+.....++.|++.+...+....++.+..|++.+|...|+..+...+|+. ++..+.+...
T Consensus       364 f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~-~~g~~~~~~~  442 (500)
T PRK09584        364 FLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL-IAGYVANLMA  442 (500)
T ss_pred             HHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            766431  1        1235667788899999999999999999999999999999999888888875 3333333221


Q ss_pred             hhccCCCCcccc--ccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009130          484 DRVASGEDHTCY--GTHCFMLSFMIMAFVAFFGSLVAFLLFLRT  525 (543)
Q Consensus       484 ~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  525 (543)
                      .    ++.....  ...+|...|...++.+++..++.+.+.++.
T Consensus       443 ~----~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~  482 (500)
T PRK09584        443 V----PDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKL  482 (500)
T ss_pred             c----ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    0000000  112377888888877766555555544433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.2e-20  Score=182.17  Aligned_cols=429  Identities=13%  Similarity=0.021  Sum_probs=255.9

Q ss_pred             chhhHHHHHHHHHHHHHcC-CccccccccHHHHhhc-C-------CChhhHHHHHHHhhhccc-ccchhhHhhhhccccc
Q 009130            9 TNSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQ-N-------YDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNH   78 (543)
Q Consensus         9 ~~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~-~-------~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~   78 (543)
                      +++....+..+.+-.+..+ ..++.+...|.+...+ +       ++..-.+.+.....+|.+ .|++.|++.||+|   
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~G---  112 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFG---  112 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence            3444444443333333343 3567777777665543 2       334444578888888887 6889999999999   


Q ss_pred             ccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCc
Q 009130           79 HHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSG  157 (543)
Q Consensus        79 ~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg  157 (543)
                                  ||++....++++.+++++.++..+--.++ .-++.++++|++.|+|.|.-||.+..+.+|.-. ++||
T Consensus       113 ------------RK~vYG~~liImIi~t~~~~~s~~~~~~~-~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG  179 (538)
T KOG0252|consen  113 ------------RKKVYGKELIIMIICSALSGLSVGTTSPL-GVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRG  179 (538)
T ss_pred             ------------chhhhhHHHHHHHHHHHHhccCCCCCCCc-chhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcccc
Confidence                        99999999999999998733322111221 136678889999999999999999999999887 6799


Q ss_pred             chhHHHHHhhhhhHHHHHHHHHHhc---C----C--------CchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhh
Q 009130          158 TIVGILKGFVGLSGAVLTQVYKTVC---N----G--------NPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHL  222 (543)
Q Consensus       158 ~~~gi~~~~~~lg~~i~~~l~~~l~---~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (543)
                      .-.+.+.+..++|...+.+++..+.   +    .        .-||..+.++++|.++.+..  .+ ..|+.+    + +
T Consensus       180 a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~--Rl-~M~Et~----~-Y  251 (538)
T KOG0252|consen  180 AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF--RL-KMPETA----R-Y  251 (538)
T ss_pred             ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh--hh-cCCcch----h-H
Confidence            9999999999999888876654432   1    0        12555555555554442211  11 011100    0 0


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCc
Q 009130          223 NAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDE  302 (543)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (543)
                      .+   +                                           ...+++...  ++.++.... ..       +
T Consensus       252 ~a---l-------------------------------------------~~~~~~~a~--~d~~k~~~~-~~-------~  275 (538)
T KOG0252|consen  252 TA---L-------------------------------------------VSKKLKQAA--GDMKKVLSV-DI-------E  275 (538)
T ss_pred             HH---H-------------------------------------------hhcCHhhhh--hcccccccc-cc-------c
Confidence            00   0                                           000000000  000000000 00       0


Q ss_pred             cchhcccccccchhhcchhHHHhhc---chhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHH--------HHH
Q 009130          303 SKVTAAFDDKILKDEEDMNLLQAMC---TGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINS--------LIS  371 (543)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~--------~~~  371 (543)
                      ++++.......+++.... +.+.+.   -+.....+...|..-.+.+....+...+++..|+.+.+...        ...
T Consensus       276 ~~~~~~~~~~~~~~~~~~-F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~  354 (538)
T KOG0252|consen  276 AESTAESDVPPPSNSFGL-FSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNL  354 (538)
T ss_pred             hhhccccCCCCcccccch-HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHH
Confidence            000000011111111111 111111   13344555666666667777777778888877776554433        223


Q ss_pred             HHHHHHhh-hccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhc-C-c---ch-HHHHHHHHHhhhhhhhhhHH
Q 009130          372 LWSIWNFF-GRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASG-F-P---GN-LFVGTMIVGVCYGSQWSLMP  444 (543)
Q Consensus       372 ~~~i~~~i-g~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~-~---~~-~~~~~~l~G~~~g~~~~~~~  444 (543)
                      +..+++.+ |-.+...++|++||      ++..+.+.+++.+..+.++.+ + .   .. .....+..-++.-+......
T Consensus       355 iia~~~~vPGyw~tv~~id~iGR------k~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttf  428 (538)
T KOG0252|consen  355 IIAVCSTVPGYWFTVYFIDIIGR------KYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTF  428 (538)
T ss_pred             HHHHHccCCceeEEEEEeehhhh------HHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeE
Confidence            44444444 77888999999965      488888999988888777632 2 1   11 12222222233333334455


Q ss_pred             HHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          445 TITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       445 ~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .+.+|.||.+.|++.+|+....+=+|+ +++...++.+.+..       .+..-+++++|++.+++++++.+..+++. |
T Consensus       429 ivpaE~FParvR~t~hGIsAA~GK~GA-ivg~~~F~~~t~~~-------yp~~~g~~~v~~i~~~~~~~gi~~T~l~p-E  499 (538)
T KOG0252|consen  429 IVPAEIFPARVRSTCHGISAASGKAGA-IVGAFGFLYLTDHN-------YPPNIGVRNVFIILAGCMLLGILFTLLIP-E  499 (538)
T ss_pred             EeehhhchHHHhhhhhhHHHHhccchH-HHHHHHhhHhhhcc-------CCccccchHHHHHHHHHHHHhHheeEEee-c
Confidence            677899999999999999998888888 47776666666621       00112489999999999999998887776 8


Q ss_pred             chhhhHHHH
Q 009130          525 TRRFYNQVV  533 (543)
Q Consensus       525 ~~~~~~~~~  533 (543)
                      ++++..++.
T Consensus       500 tk~~~leei  508 (538)
T KOG0252|consen  500 TKGKSLEEI  508 (538)
T ss_pred             ccccCHHHh
Confidence            877766544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=1.6e-19  Score=187.17  Aligned_cols=356  Identities=10%  Similarity=0.006  Sum_probs=240.5

Q ss_pred             HHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 009130           37 STLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVG  115 (543)
Q Consensus        37 ~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~  115 (543)
                      +.+..+..-|+...+++..+..+... +++++|.++||++               ||++++.+-++.++..+.+++....
T Consensus        34 ~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~d---------------rrrili~~~~~~~~~~~~L~~l~~~   98 (524)
T PF05977_consen   34 AWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFD---------------RRRILILSQLLRALVALLLAVLAFF   98 (524)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45555666678888887777777775 8999999999999               9999999988877766665443222


Q ss_pred             cCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHH
Q 009130          116 LLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLA  194 (543)
Q Consensus       116 ~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~  194 (543)
                      -..   +.+.+++.-++.|++.+...|.-.+++.+..| ++...+.++.....+++.++||.+++.++...+-.+.+.+.
T Consensus        99 ~~~---~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~in  175 (524)
T PF05977_consen   99 GLL---SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLIN  175 (524)
T ss_pred             CcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            222   37889999999999999999999999999999 57889999999999999999988888764221111111111


Q ss_pred             HHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccccccccc
Q 009130          195 LLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITA  274 (543)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (543)
                      .+..++.                                                             +..+   ...++
T Consensus       176 alsfl~~-------------------------------------------------------------i~~l---~~~~~  191 (524)
T PF05977_consen  176 ALSFLIS-------------------------------------------------------------ILAL---LRWKP  191 (524)
T ss_pred             HHHHHHH-------------------------------------------------------------HHHH---HHccc
Confidence            1111000                                                             0000   01111


Q ss_pred             ccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHH
Q 009130          275 DREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQ  354 (543)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~  354 (543)
                      +.++.+                  .          .++...+......+-..++|......+..++.......+...+|.
T Consensus       192 ~~~~~~------------------~----------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl  243 (524)
T PF05977_consen  192 PPPPSS------------------L----------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPL  243 (524)
T ss_pred             cccccc------------------c----------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhH
Confidence            100000                  0          000001112233444455666554444333332223334445677


Q ss_pred             HHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHH
Q 009130          355 VGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPGNLFVGTMIV  432 (543)
Q Consensus       355 ~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~  432 (543)
                      +.++ +|.++...|++.+..+++.++|.++.+++.+|+.      +..++..+.+..+++++.++. ++.+...+..++.
T Consensus       244 ~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~------~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~  317 (524)
T PF05977_consen  244 FARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLS------SRRLVLLASLLFALALLLLALSPSFWLALIALFLA  317 (524)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccC------cchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            7754 6999999999999999999999999888877763      334566667777777666663 4455556677788


Q ss_pred             HhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHH
Q 009130          433 GVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAF  512 (543)
Q Consensus       433 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~  512 (543)
                      |++.....+...+.+.+..|++.+|.+.++..+....+. .+|..+.|.+.|..|            .+.++.+.++..+
T Consensus       318 G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~-~lGsll~G~la~~~g------------~~~al~~a~~~ll  384 (524)
T PF05977_consen  318 GAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGM-PLGSLLWGFLADHFG------------VRTALLIAGAALL  384 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC------------HHHHHHHHHHHHH
Confidence            888888888888889999999999999999987776665 478889999999987            7778777776666


Q ss_pred             HHHHHHHHH
Q 009130          513 FGSLVAFLL  521 (543)
Q Consensus       513 ~~~i~~~~~  521 (543)
                      ++.++....
T Consensus       385 l~~~~~~~~  393 (524)
T PF05977_consen  385 LSALIALRF  393 (524)
T ss_pred             HHHHHHHHh
Confidence            666555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.86  E-value=3.4e-21  Score=173.97  Aligned_cols=369  Identities=14%  Similarity=0.084  Sum_probs=237.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCc--cc-cccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccc
Q 009130           10 NSKWIATVASIWIQCSVGTT--YT-FSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRT   85 (543)
Q Consensus        10 ~~~w~~~~~~~~~~~~~g~~--~~-~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~   85 (543)
                      .+|.++++..++  +-.|+.  |. -+.+..+.++|.+++.++..++-+.+....+ ...+.|++.||.           
T Consensus        40 ~hr~m~lv~mc~--lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~-----------  106 (459)
T KOG4686|consen   40 GHRFMALVFMCL--LGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR-----------  106 (459)
T ss_pred             hhHHHHHHHHHH--hcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh-----------
Confidence            345665543222  224443  33 3467778888899998888877777777776 677999999984           


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHH
Q 009130           86 RFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILK  164 (543)
Q Consensus        86 ~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~  164 (543)
                         +|.|+...+=+++..+|.+.++   ++-..+  ++|.+.++|++.|+|.-.....-+++...||. |+.+.++|+..
T Consensus       107 ---fgir~gtii~~~fv~~GqliFa---~Ggi~~--aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlql  178 (459)
T KOG4686|consen  107 ---FGIRLGTIILCIFVFLGQLIFA---AGGISH--AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQL  178 (459)
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHH---hchHHH--HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHH
Confidence               3688877777777788888865   444444  49999999999999988777888889999997 88999999998


Q ss_pred             HhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHH--HHHHHHHHHH
Q 009130          165 GFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTL--AAYFMVITVM  242 (543)
Q Consensus       165 ~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  242 (543)
                      ...-+|+.+--.+.+++.+.       +-.               ..|.         ..-..+|+.+  ....+...  
T Consensus       179 SvAR~GstvNf~lm~~ly~~-------~~~---------------~~~~---------~ghT~LG~~l~~~~~tc~~s--  225 (459)
T KOG4686|consen  179 SVARLGSTVNFLLMPFLYDT-------MGR---------------MFPG---------VGHTLLGLWLCFEVKTCKQS--  225 (459)
T ss_pred             HHHHhhceeeeeecHHHHHH-------HHH---------------hccc---------chHHHHHHHHHHHHHHHHHH--
Confidence            88888876543333322110       000               0000         0000111000  00000000  


Q ss_pred             hhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhH
Q 009130          243 ENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNL  322 (543)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (543)
                                      ....+.   ..  +.++..++..  +           .|+...         .++++      .
T Consensus       226 ----------------lical~---lg--~~D~rAeril--h-----------~e~g~~---------Ge~pk------L  256 (459)
T KOG4686|consen  226 ----------------LICALS---LG--LSDDRAERIL--H-----------LEEGFL---------GEEPK------L  256 (459)
T ss_pred             ----------------HHHHHH---hh--hhhhHHHHHH--h-----------hhcCcc---------cCCcc------c
Confidence                            000000   00  0011111110  0           000000         00000      0


Q ss_pred             HHhh-cchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCch
Q 009130          323 LQAM-CTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARP  400 (543)
Q Consensus       323 ~~~~-~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~  400 (543)
                      .+.. -.|.||.+.+..++.....+.++..-|.++++ .|+|+..++.+.+.......+.++++|.++||.|++.     
T Consensus       257 tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----  331 (459)
T KOG4686|consen  257 TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----  331 (459)
T ss_pred             ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----
Confidence            0000 25789999888888777777777777777766 5999999999999888889999999999999998652     


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhh
Q 009130          401 IFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIG  480 (543)
Q Consensus       401 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g  480 (543)
                      +.+..+.+....+...+.+ +....+..+.+.|+.+.........+++.+.|+++.|+++|.+....++|-. +-|++.|
T Consensus       332 ~wv~~a~~~tl~~H~~l~F-t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla-~i~Iiag  409 (459)
T KOG4686|consen  332 WWVASACILTLLGHSGLFF-TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLA-FIPIIAG  409 (459)
T ss_pred             hhHHHHHHHHHHHhhhHHh-hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhh-HHhhhhh
Confidence            3333344444444443332 2233467788999998887777888899999999999999999999999975 6789999


Q ss_pred             hhhhhccC
Q 009130          481 RIYDRVAS  488 (543)
Q Consensus       481 ~l~~~~g~  488 (543)
                      .+.|..|+
T Consensus       410 ~i~d~~g~  417 (459)
T KOG4686|consen  410 FIADGDGS  417 (459)
T ss_pred             eeecCCCc
Confidence            99998773

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.86  E-value=5.4e-20  Score=182.34  Aligned_cols=352  Identities=8%  Similarity=-0.085  Sum_probs=221.3

Q ss_pred             ccccccccHHHHhhcCCChhh-HHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQST-LERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGY  106 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~-~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~  106 (543)
                      .-+.+...|++.+|+|+|+.| .+.+.+.+..++. ..+|.|.++||+|               .|+++.++.+.+.+.+
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG---------------~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLR---------------YKPVLVLQALSFVCVW  106 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC---------------chHHHHHHHHHHHHHH
Confidence            456788889999999999999 8888888888886 7889999999999               9999999999999999


Q ss_pred             HHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCC
Q 009130          107 FLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGN  185 (543)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~  185 (543)
                      ++     .+++++   +..+.+.|++.|+++|..+ +...++.+||| ++|++++|+..++..+|.++++++++. ....
T Consensus       107 ~L-----~~fa~S---l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~  176 (511)
T TIGR00806       107 LL-----LLLGTS---VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL  176 (511)
T ss_pred             HH-----HHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            99     666665   7999999999999999999 89999999999 689999999999999999999999998 4455


Q ss_pred             chhHHHHHHHH---HHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 009130          186 PSTYILVLALL---PTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLL  262 (543)
Q Consensus       186 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (543)
                      +|++...+..+   ..+++++..++++.++++         .                                      
T Consensus       177 gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~s---------l--------------------------------------  209 (511)
T TIGR00806       177 GWISYSTLNIISLVFMTFSVFLALFLKRPKRS---------L--------------------------------------  209 (511)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCCCCchh---------h--------------------------------------
Confidence            67766655443   333333333333322110         0                                      


Q ss_pred             HhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhh
Q 009130          263 LLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGM  342 (543)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~  342 (543)
                              .++++++.+    +....+.+...++++ .++.+... ......-+.-..+.++..+|+......+...+..
T Consensus       210 --------~f~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~  275 (511)
T TIGR00806       210 --------FFNRLEDVR----GALPCELDQMVPGPG-GKLEDYLG-TCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNS  275 (511)
T ss_pred             --------hhccccccc----cccccccccCCCCCc-cccchhhh-hhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHh
Confidence                    000000000    000000000000000 00000000 0000000111233455566776554444444444


Q ss_pred             chhhhhhhchHHHHHhhCC-CchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hc
Q 009130          343 GSGIATMNNIAQVGESLHY-STTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SG  420 (543)
Q Consensus       343 ~~~~~~~~~~~~~~~~~g~-s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~  420 (543)
                      .+++-+.++...+.++..- .+.-.|..-++..+.+++..+..|++-.+..+.   + ...+.+..++....++++. .+
T Consensus       276 ~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~---~-~l~l~v~s~~~~gll~~m~~t~  351 (511)
T TIGR00806       276 AGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW---S-KLLIAVVSAIQAGLVFWMSQSH  351 (511)
T ss_pred             hHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh---H-HHHHHHHHHHHHHHhhhhhccc
Confidence            4444445444444444311 112455566677777788888888885544211   1 1233333333333344444 45


Q ss_pred             CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhh
Q 009130          421 FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVG  470 (543)
Q Consensus       421 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig  470 (543)
                      +.+..++.-++++..+....++...-++.....+.+|..+|+-+....+-
T Consensus       352 ~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~L  401 (511)
T TIGR00806       352 DIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATAL  401 (511)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHH
Confidence            66677888888888888877777777888888888899999875544333

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.85  E-value=3.5e-19  Score=187.33  Aligned_cols=386  Identities=12%  Similarity=0.045  Sum_probs=248.4

Q ss_pred             hHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHH
Q 009130           49 TLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMC  127 (543)
Q Consensus        49 ~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  127 (543)
                      +.+++.+...++.. .+++.|+++|++|               ||++++++.+++.+|.++     ++++++   +..++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~G---------------Rk~~l~~~~~~~~iG~ii-----~~~a~~---~~~l~  146 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIG---------------RKKTLLLAVVLFLIGAII-----IALAPS---WYQLI  146 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHHHHHHHHHHHHH-----HHHhhh---HHHHH
Confidence            45788888888886 7889999999999               999999999999999999     777887   89999


Q ss_pred             HHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHHHH
Q 009130          128 LFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG--NPSTYILVLALLPTLVSLLF  204 (543)
Q Consensus       128 ~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~  204 (543)
                      ++|+++|+|.|....+...+++|.-| +.||...+.......+|..++ .+.+...++  .+||..+.+..+|.++..++
T Consensus       147 ~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  147 VGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             HHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 579999999999999887777 555555544  37999999999998888887


Q ss_pred             HhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCC
Q 009130          205 MSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPK  284 (543)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (543)
                      +.++++.|..-.+..+...+...+.              ...                           ...+++.    
T Consensus       226 ~~~~pesp~~L~~~g~~~~a~~~l~--------------~l~---------------------------g~~~~~~----  260 (513)
T KOG0254|consen  226 MLFLPESPRWLIEKGRLEEAKRSLK--------------RLR---------------------------GLSPEDV----  260 (513)
T ss_pred             HHhCCCChHHHHHcCChHHHHHHHH--------------HHh---------------------------CCCCcch----
Confidence            6666654431101000000000000              000                           0000000    


Q ss_pred             CCCCCCCCCCccccCCCccchhcccccccchhhcchhHH----HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhC
Q 009130          285 LSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLL----QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLH  360 (543)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  360 (543)
                            +...++.+      .....+....+  .+....    +..+++.++...+..+..........++.+++++..|
T Consensus       261 ------~~~~~~~~------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g  326 (513)
T KOG0254|consen  261 ------EVELELLK------IKLLVEAEVAE--GKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG  326 (513)
T ss_pred             ------HHHHHHHH------HHHHHhhhccc--ccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC
Confidence                  00000000      00000000000  000111    1233445555666666666555667888889988888


Q ss_pred             CCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-----cC----c----chHHH
Q 009130          361 YSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-----GF----P----GNLFV  427 (543)
Q Consensus       361 ~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-----~~----~----~~~~~  427 (543)
                      .+... .....+.++.+.++..+..++.||+||      +++++.+...+.+++++++.     ..    .    ...++
T Consensus       327 ~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gR------r~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (513)
T KOG0254|consen  327 LKSDT-FLASIILGVVNFLGTLVATYLVDRFGR------RKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIV  399 (513)
T ss_pred             CCCch-HHHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHH
Confidence            87544 455567777788888888999999954      47888888888888776541     11    1    11122


Q ss_pred             HHHHHHhhhhhh-hhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHH
Q 009130          428 GTMIVGVCYGSQ-WSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMI  506 (543)
Q Consensus       428 ~~~l~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~  506 (543)
                      ..++.-..++.. .++...+.+|.+|.+.|+++.++....+.....++. ..+..+.+..+            ....|..
T Consensus       400 ~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~-~~~~~~~~~~~------------~~~~f~~  466 (513)
T KOG0254|consen  400 FLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS-FFFPFITEALG------------IGGTFGY  466 (513)
T ss_pred             HHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHhcc------------ccchHHH
Confidence            222222222222 234446789999999999999999888888776542 23333333321            1355666


Q ss_pred             HHHHHHHHHH-HHHHHhhcchhhhHHHHHHhh
Q 009130          507 MAFVAFFGSL-VAFLLFLRTRRFYNQVVIRRL  537 (543)
Q Consensus       507 ~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~  537 (543)
                      ..+.+.+..+ ..++..+|+|.+..++.+++.
T Consensus       467 f~~~~~~~~~~fv~~~~pETkg~sleei~~~~  498 (513)
T KOG0254|consen  467 FGGICLLSLIIFVFFFVPETKGLTLEEINELF  498 (513)
T ss_pred             HHHHHHHHHHHHheEEcccCCCCcHHHHHHHH
Confidence            6666666666 677778899888777655543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.84  E-value=6e-20  Score=177.80  Aligned_cols=411  Identities=13%  Similarity=0.074  Sum_probs=266.0

Q ss_pred             ccchhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccc
Q 009130            7 LSTNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTR   84 (543)
Q Consensus         7 ~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~   84 (543)
                      +..++||.++++..++.++.+. --.|+....+....++ +..-..|++..+++.++ .++++-++.||+|         
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~G---------  107 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFG---------  107 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccc---------
Confidence            5788999999999988888764 4568888888888899 44444488888877776 7889999999998         


Q ss_pred             ccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHH--HHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhH
Q 009130           85 TRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVP--LMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVG  161 (543)
Q Consensus        85 ~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g  161 (543)
                            -|.+..++..+..+|..+=.++..-+.++  .++  ....+..+.+.++-.....+..+.+-||| ++|..|..
T Consensus       108 ------LR~a~llgt~ln~iGa~Ir~iss~p~v~~--~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~  179 (480)
T KOG2563|consen  108 ------LRTALLLGTVLNGIGAWIRLISSLPFVPP--LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATV  179 (480)
T ss_pred             ------hHHHHHHHHHHHHHHHHHhhhccCccccc--cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhh
Confidence                  99999999999999999944322222223  244  55667788888888777777788899997 79999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHH
Q 009130          162 ILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITV  241 (543)
Q Consensus       162 i~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (543)
                      +-..++.+|.+++..+...++.+.                          +    +.++..+.+..+-....        
T Consensus       180 ~~v~~n~LGvavg~llppilV~~~--------------------------~----~~~~~~~~~~~~f~~~~--------  221 (480)
T KOG2563|consen  180 LGVMGNPLGVAVGFLLPPILVPSS--------------------------K----DSEDNSWLFFTLFLGVE--------  221 (480)
T ss_pred             HHHhcchHHHHHHhhccceecCCC--------------------------C----CcchhHHHHHHHHHHHH--------
Confidence            999999999999865554443211                          0    11111111110000000        


Q ss_pred             HhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchh
Q 009130          242 MENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMN  321 (543)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (543)
                                       .+.++.........+++|+-+.   +.                  .     ++.+.+.+...+
T Consensus       222 -----------------~l~~l~l~l~~~~~~~~P~tPp---s~------------------s-----~~~~~~~~f~~s  258 (480)
T KOG2563|consen  222 -----------------CLAALLLALVLFVFTKKPPTPP---SA------------------S-----QAALQDASFPKS  258 (480)
T ss_pred             -----------------HHHHHHHHHHHHhcCCCCCCCC---ch------------------h-----HhhhhcCcHHHH
Confidence                             0000000000011111111100   00                  0     000001224467


Q ss_pred             HHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchH
Q 009130          322 LLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPI  401 (543)
Q Consensus       322 ~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~  401 (543)
                      .++.++|++|....+++.+..+.+++....+-..+...|++...+|....+..+++++|.++.|.+.||.++.     +.
T Consensus       259 i~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f-----k~  333 (480)
T KOG2563|consen  259 IKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF-----KL  333 (480)
T ss_pred             HHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH-----HH
Confidence            7889999999999999888777666655555444555699989999999999999999999999999998543     23


Q ss_pred             HHHHHHHHHHHH-HHHHh-h---cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          402 FMVITLVAMSIG-HIAIA-S---GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       402 ~~~~~~~~~~i~-~~~~~-~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      ++.+......++ +.+.. .   .....++....++|++..+..|+..-+-.|...|..-++..|+.++.+.+-+.++ .
T Consensus       334 ~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~-~  412 (480)
T KOG2563|consen  334 TTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVIL-V  412 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHH-H
Confidence            444444444433 22222 1   2234466667788888888888887788888777888889999887777666433 4


Q ss_pred             hhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhhhH
Q 009130          477 RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRFYN  530 (543)
Q Consensus       477 ~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~  530 (543)
                      ++.+...+..+.        +..+...-+.+...++++.++..+++.+.||.+.
T Consensus       413 ~~~~~~~~~~~~--------~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~  458 (480)
T KOG2563|consen  413 FIMGILAEDLGP--------PGNTFPANIFLTVSALLGAILVAFFRPDYRRLRA  458 (480)
T ss_pred             HHHHHHhhccCC--------CCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence            566666655541        1123334455556666676776777665555444

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.82  E-value=1.4e-23  Score=217.89  Aligned_cols=380  Identities=13%  Similarity=0.080  Sum_probs=238.2

Q ss_pred             hhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCC---CCChH
Q 009130           48 STLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLP---RPVPV  123 (543)
Q Consensus        48 ~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~---~~~~~  123 (543)
                      .+.+++.+...++.. .+++.|.++||+|               ||+++.++.++..++.++     .++++   +   +
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~G---------------Rk~~~~~~~~~~~i~~~~-----~~~~~~~~~---~  102 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYG---------------RKPALIISALLMIIGSIL-----IAFAPSYNN---F  102 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccccc---------------cccccccccccccccccc-----ccccccccc---c
Confidence            345677777777876 6778999999999               999999999999999999     88887   5   7


Q ss_pred             HHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC---CCchhHHHHHHHHHHH
Q 009130          124 PLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN---GNPSTYILVLALLPTL  199 (543)
Q Consensus       124 ~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~---~~~~~~~~~~~~~~~~  199 (543)
                      +.+++.|+++|+|.|...+....++.|..| ++||+...+...+..+|..++..+......   ++.||+.+....+|.+
T Consensus       103 ~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l  182 (451)
T PF00083_consen  103 WMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSL  182 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999998 679999999999999998888766544422   2458888888888877


Q ss_pred             HHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccc
Q 009130          200 VSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDA  279 (543)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (543)
                      +.++...++++.|..-.                                                       .+.+.++.
T Consensus       183 ~~~~~~~~~pESP~wL~-------------------------------------------------------~~~~~~~A  207 (451)
T PF00083_consen  183 LVLLLRFFLPESPRWLL-------------------------------------------------------SKGRDEEA  207 (451)
T ss_pred             cccccccccccccceec-------------------------------------------------------cccccccc
Confidence            66555555555443100                                                       00100100


Q ss_pred             cCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchh----HHHHHHHHHhhhchh-hhhhhchHH
Q 009130          280 MTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGN----FWFLCIATLCGMGSG-IATMNNIAQ  354 (543)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----f~~~~l~~~~~~~~~-~~~~~~~~~  354 (543)
                      +.  ..++-..++. ++++.+++.+    +.++  .++.+.+.++.++++.    .........+....+ .....+.+.
T Consensus       208 ~~--~l~~~~~~~~-~~~~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~  278 (451)
T PF00083_consen  208 EK--VLRKLRGKEI-EDEEIEEIKA----EKKE--SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPS  278 (451)
T ss_pred             cc--cccccccccc-cccccccccc----cccc--ccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence            00  0000000000 0000000000    0000  0001123344444432    222222222222222 234445566


Q ss_pred             HHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh------hcC----cch
Q 009130          355 VGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA------SGF----PGN  424 (543)
Q Consensus       355 ~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~------~~~----~~~  424 (543)
                      +.+..|.+..  -....+..+...++.++..++.||+|||      +++..+.+.++++++.+.      ..+    ...
T Consensus       279 i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T PF00083_consen  279 IFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRR------KLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL  350 (451)
T ss_pred             cccccccccc--cccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccc
Confidence            6677777765  2233455567778888888999999765      456666655555444331      112    111


Q ss_pred             HHHHHHHHHhhhh-hhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHH
Q 009130          425 LFVGTMIVGVCYG-SQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLS  503 (543)
Q Consensus       425 ~~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~  503 (543)
                      .++...+...+++ +..+....+++|.+|.+.|+++.|+....+.+++. +.|.+...+.+..+            ....
T Consensus       351 ~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~-i~~~~~~~~~~~~~------------~~~~  417 (451)
T PF00083_consen  351 SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGF-IIPFLFPYLFNNLG------------GWGV  417 (451)
T ss_pred             cceeeeecccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc------------cccc
Confidence            2222222222233 23345557889999999999999999988888884 67777777777654            2356


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhhHHHHHH
Q 009130          504 FMIMAFVAFFGSLVAFLLFLRTRRFYNQVVIR  535 (543)
Q Consensus       504 f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  535 (543)
                      +.+.+++++++.++.+++.+|+|++..++.++
T Consensus       418 ~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  418 FLIFAGVCLIAIIFVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             chhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence            77777777888888888889999888766554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09669 putative symporter YagG; Provisional

Probab=99.80  E-value=2.2e-17  Score=170.98  Aligned_cols=345  Identities=11%  Similarity=0.026  Sum_probs=200.8

Q ss_pred             ccHHHHhhcCCChhhHHHHHHHhh-hcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHH
Q 009130           35 YSSTLKSTQNYDQSTLERVAVFKD-MGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASV  113 (543)
Q Consensus        35 ~~~~l~~~~~~s~~~~~~~~~~~~-~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~  113 (543)
                      +...+.+++|++..+.+.+..... ...+..++.|.++||.+    +|+||      ||+.++.+.+.+++...+..   
T Consensus        32 l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~----~r~Gr------rrp~il~~~~~~~i~~~l~f---   98 (444)
T PRK09669         32 LAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTR----TRHGQ------FRPYLLWFAIPFGVVCLLTF---   98 (444)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCC----CCCCC------cchhHHHHHHHHHHHHHHHH---
Confidence            456788899999999995555444 45568999999999974    45566      67778788888877776622   


Q ss_pred             hccCCCC---ChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC--CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          114 VGLLPRP---VPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG--HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       114 ~~~~~~~---~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp--~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                        ..++.   .....+++..++.+.+..+...+-.+..+++.+  ++|.+..+....+..+|..+++.+...+..     
T Consensus        99 --~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~-----  171 (444)
T PRK09669         99 --YTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVD-----  171 (444)
T ss_pred             --hCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence              22211   013445555666666666666666678888884  579888888887777777777644322210     


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                                           ..+.+ .++.++.......++                             ...+.....
T Consensus       172 ---------------------~~~~~-~~~~g~~~~~~i~~i-----------------------------i~~v~~~~~  200 (444)
T PRK09669        172 ---------------------ILGKG-DEQKGYFYAMMVMGL-----------------------------LGVVLFFCC  200 (444)
T ss_pred             ---------------------HhCCC-chhhhHHHHHHHHHH-----------------------------HHHHHHHHH
Confidence                                 00000 001111111111110                             000000000


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                      ....|++.+  +                   ++        + +  +++.....++.+||+.++.+.+..++........
T Consensus       201 ~~~~~e~~~--~-------------------~~--------~-~--~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~  248 (444)
T PRK09669        201 FFMTKERYT--P-------------------EV--------D-N--SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTR  248 (444)
T ss_pred             hCCeEEecC--C-------------------CC--------c-C--CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            111111100  0                   00        0 0  0111234577889999988877666543333222


Q ss_pred             hhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHH-HHh--hcCcchH
Q 009130          349 MNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHI-AIA--SGFPGNL  425 (543)
Q Consensus       349 ~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~-~~~--~~~~~~~  425 (543)
                      .....++.+..--+++..+.+.....+..+++.+++++++||+++|      ..+..+.+..++..+ ++.  ..+...+
T Consensus       249 ~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (444)
T PRK09669        249 GGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRV------RAFKWTIVAFVILSALIFFIPPSNVWLI  322 (444)
T ss_pred             hhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHHHHHHhCcchHHHH
Confidence            2222333233221233344455566677888999999999999654      444444444333222 222  2233445


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcC-------CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCC
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFG-------VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASG  489 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~  489 (543)
                      ++..++.|++.+...+..+++++|..+       ++..|..+|..+....+|.. +++.+.|.+.|..|-.
T Consensus       323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~a-lg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLA-IGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCC
Confidence            666778899999988888999988874       34457788888888888874 8888899998887743

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.80  E-value=5e-18  Score=179.45  Aligned_cols=384  Identities=14%  Similarity=0.057  Sum_probs=235.2

Q ss_pred             hhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 009130           41 STQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPR  119 (543)
Q Consensus        41 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~  119 (543)
                      +.+..+.....+..+.+.+|.. ..++.|+++||+|               ||++++.+.++..++.++     ++++++
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~G---------------Rk~~~~~~~~~~~i~~~~-----~a~a~~  170 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFG---------------RKPVLLVSLLLFIIFGIL-----TAFAPN  170 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcc---------------cHHHHHHHHHHHHHHHHH-----HHHhCc
Confidence            4556666666677788888887 5668999999999               999999999999999998     888888


Q ss_pred             CChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 009130          120 PVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPT  198 (543)
Q Consensus       120 ~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~  198 (543)
                         ++.+++.|+++|++.+........+++|+++ ++|+.+..+ ....-.++.++++.+.++..  .|||......+|.
T Consensus       171 ---~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~  244 (521)
T KOG0255|consen  171 ---YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPS  244 (521)
T ss_pred             ---HHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence               8999999999999999999999999999996 789999999 77788888888888888876  8999999988888


Q ss_pred             HHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccccccccccccc
Q 009130          199 LVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADRED  278 (543)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (543)
                      ...++..++.++.|.....+++...+...                                                .++
T Consensus       245 ~~~~~~~~l~~Es~rwl~~~g~~~~a~~~------------------------------------------------l~~  276 (521)
T KOG0255|consen  245 GLFLLLWFLPPESPRWLLSKGRIDEAIKI------------------------------------------------LKK  276 (521)
T ss_pred             HHHHHHHHccCcChHHHHHcCchHHHHHH------------------------------------------------HHH
Confidence            87766633433332210000000000000                                                000


Q ss_pred             ccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh
Q 009130          279 AMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES  358 (543)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~  358 (543)
                      ..   +.++...++      .+..+......++.....+++....+.++.+++....+...+.+........-++.....
T Consensus       277 ~a---~~n~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~  347 (521)
T KOG0255|consen  277 IA---KLNGRKLSV------KELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG  347 (521)
T ss_pred             HH---hhcCCCCCc------HHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh
Confidence            00   000000000      000000000000011111122446777888754333333333321111111122222233


Q ss_pred             hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCc-c--hHHHHHHHHHh
Q 009130          359 LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFP-G--NLFVGTMIVGV  434 (543)
Q Consensus       359 ~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~-~--~~~~~~~l~G~  434 (543)
                      +|.+..   ....+.+..........+...|++|      |+.....+..+..++++.... ... .  ...+...+..+
T Consensus       348 lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~g------R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (521)
T KOG0255|consen  348 LGGNIY---LNFTLSGLVELPAYFRNGLLLPEFG------RRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF  418 (521)
T ss_pred             cCchHH---HHHHHHHHHHhhHHHHHHHHHHHhC------cHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            444332   2223333355555566678888884      457788888888887776662 222 2  23334444455


Q ss_pred             hhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHH
Q 009130          435 CYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFG  514 (543)
Q Consensus       435 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~  514 (543)
                      +.+..+.....+..|.+|+..|..+.|.......++++ ++|.+........             ....+.+.+....+.
T Consensus       419 ~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i-~ap~~~~~~~~~~-------------~~~~~~~~~~~~~l~  484 (521)
T KOG0255|consen  419 FIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSI-LAPLFPLLLRQMF-------------PLLGLILFGWLALLL  484 (521)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhc-------------ccchHHHHHHHHHHH
Confidence            66666777788999999999999999999999999984 7775543332221             112223345555566


Q ss_pred             HHHHHHHhhcchhhhH
Q 009130          515 SLVAFLLFLRTRRFYN  530 (543)
Q Consensus       515 ~i~~~~~~~~~~~~~~  530 (543)
                      ..++..+.++++.+..
T Consensus       485 ~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  485 GLLSLLLLPETKGKPL  500 (521)
T ss_pred             HHHHHhcCcccCCCCC
Confidence            6566566667666544

>PRK09848 glucuronide transporter; Provisional

Probab=99.79  E-value=3.7e-17  Score=169.55  Aligned_cols=161  Identities=13%  Similarity=0.018  Sum_probs=115.3

Q ss_pred             hHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCc
Q 009130          321 NLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWAR  399 (543)
Q Consensus       321 ~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r  399 (543)
                      .+++++|||.++...+..++............+++.++ +|.++...+.......++.+++.++.+++.||+++|     
T Consensus       220 ~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~-----  294 (448)
T PRK09848        220 SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK-----  294 (448)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----
Confidence            35778999999988888777766655555566666665 476655555444455667788999999999999643     


Q ss_pred             hHHHHHHHHHHHHHHHHHhh-c--CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCc-------chhhHHHHHHhhhhh
Q 009130          400 PIFMVITLVAMSIGHIAIAS-G--FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVR-------HMGTIFNTISIACPV  469 (543)
Q Consensus       400 ~~~~~~~~~~~~i~~~~~~~-~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~i  469 (543)
                       +.+.++.++.+++++.+.. +  +.+..++..++.|+|.+...+...++.+|..+.+       +.|..+|+.+....+
T Consensus       295 -~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl  373 (448)
T PRK09848        295 -NTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC  373 (448)
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence             5666677776666655442 2  2233445566788888888888888888877643       458999999998889


Q ss_pred             hhhhhhhhhhhhhhhhccC
Q 009130          470 GSYICSVRIIGRIYDRVAS  488 (543)
Q Consensus       470 g~~i~~~~l~g~l~~~~g~  488 (543)
                      |.. +++.+.|.+.+..|.
T Consensus       374 g~a-ig~~i~g~~l~~~G~  391 (448)
T PRK09848        374 GQA-IGGSIPAFILGLSGY  391 (448)
T ss_pred             HHH-HHHHHHHHHHHHcCC
Confidence            885 788888888877663

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.79  E-value=7.8e-16  Score=157.68  Aligned_cols=416  Identities=10%  Similarity=0.021  Sum_probs=224.0

Q ss_pred             cccccc-ccHHHHhhcCCChhhHHHHHHHhhhc-ccccchhhHhhhhc-ccccccccccccccCCchHHHHHHHHHHHHH
Q 009130           29 TYTFSI-YSSTLKSTQNYDQSTLERVAVFKDMG-GSAGILSGLLFSYV-TLNHHHHQTRTRFLRGPWVVHFTGAILCFTG  105 (543)
Q Consensus        29 ~~~~~~-~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~G~l~d~~-g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g  105 (543)
                      .|.+.. +..++++++|+++.+.+.+...+... +...+++|+++||+ |               ||+++.+|.++.+++
T Consensus        25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilG---------------rrr~iliG~il~~lg   89 (493)
T PRK15462         25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLG---------------NRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------------cHHHHHHHHHHHHHH
Confidence            454443 34456778999999999555554444 44677999999999 8               999999999999999


Q ss_pred             HHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-C--CCcchhHHHHHhhhhhHHHHHHHHHHhc
Q 009130          106 YFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-H--YSGTIVGILKGFVGLSGAVLTQVYKTVC  182 (543)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~--~rg~~~gi~~~~~~lg~~i~~~l~~~l~  182 (543)
                      .++     .+...+.  ...+.....+.++|.|...+...++++|.|| +  +|..+.++...+.++|+.++|.+.+.+.
T Consensus        90 ~ll-----l~~~~~~--~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~  162 (493)
T PRK15462         90 HVV-----LGASEIH--PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ  162 (493)
T ss_pred             HHH-----HHHhhcc--hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence            877     3322211  2223333334445666666666788999998 3  5899999999999999999999999998


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHhheecc-CCC----CcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Q 009130          183 NGNPSTYILVLALLPTLVSLLFMSHVRIY-GTN----SVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITF  257 (543)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (543)
                      +..+|++.+..+.+..+++++.....+.. +++    ++..++........+.................. .++......
T Consensus       163 ~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  241 (493)
T PRK15462        163 EEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFW-KEWSVYALI  241 (493)
T ss_pred             hhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            88889988887776666665554443321 111    111111111111111111111000000000000 011111111


Q ss_pred             HHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHH
Q 009130          258 IILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIA  337 (543)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~  337 (543)
                      ...+.....+.. ..+ .+.+                                    ++++    ++   -..+..+++.
T Consensus       242 ~~~~~~~~~~~~-~~~-~~~~------------------------------------~~er----~r---~~~~~~l~~~  276 (493)
T PRK15462        242 VATIIGLGVLAK-IYR-KAEN------------------------------------QKQR----KE---LGLIVTLTFF  276 (493)
T ss_pred             HHHHHHHHHHHH-HHH-hcCC------------------------------------HHHH----hh---HHHHHHHHHH
Confidence            111111111110 000 0000                                    0000    00   0111122221


Q ss_pred             HHhhhchhhhhhhchHHHHHh------hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH-HHHHHHHH
Q 009130          338 TLCGMGSGIATMNNIAQVGES------LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF-MVITLVAM  410 (543)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~------~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~-~~~~~~~~  410 (543)
                      ..+.+..+.-....+..+.++      .|++ -.+++..++..+..++..++.+++=.|..+|++....+. +.+++++.
T Consensus       277 ~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~  355 (493)
T PRK15462        277 SMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLM  355 (493)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence            111111111111222223322      1332 246677788888888888888887777644322222222 55667776


Q ss_pred             HHHHHHHh----h------cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhh-hhhhhhhhhhhh
Q 009130          411 SIGHIAIA----S------GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIAC-PVGSYICSVRII  479 (543)
Q Consensus       411 ~i~~~~~~----~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~ig~~i~~~~l~  479 (543)
                      .++++++.    .      .++.+++...++.++|.-...|...+.++++.|++.+|..+|+..+.. .+|+. ++..+.
T Consensus       356 g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~-~~g~~~  434 (493)
T PRK15462        356 SAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANY-LAGVIA  434 (493)
T ss_pred             HHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            76665442    1      133456667778888988889999999999999999999999997743 57764 444444


Q ss_pred             hhhhhhccCCCCccccccchhHHHHHHHHHHHHHH
Q 009130          480 GRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFG  514 (543)
Q Consensus       480 g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~  514 (543)
                      +...+...+.+.........|...|...+...++.
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        435 DQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            43322110000000001224777777777655544

>TIGR01272 gluP glucose/galactose transporter

Probab=99.77  E-value=9.9e-17  Score=157.04  Aligned_cols=285  Identities=10%  Similarity=0.025  Sum_probs=187.9

Q ss_pred             hHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 009130          122 PVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLV  200 (543)
Q Consensus       122 ~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~  200 (543)
                      +++.+++.-++.|.|.+...+..+.++++..| +++.+.+++.+..+++|..++|.+++.+.....              
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~--------------   74 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGA--------------   74 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--------------
Confidence            38999999999999999999999999999997 678999999999999999999999887752100              


Q ss_pred             HHHHHhheeccCC--CCc--ccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccccccccccc
Q 009130          201 SLLFMSHVRIYGT--NSV--DDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADR  276 (543)
Q Consensus       201 ~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (543)
                              .+...  +..  +..++...+..++.                            +..++...+..  . +.|
T Consensus        75 --------~~~~~~~~~~~~~~~~~~~~yl~ia~----------------------------~~~~~~i~~~~--~-~~p  115 (310)
T TIGR01272        75 --------GDLSMQVATANAEAAKVHTPYLLLAG----------------------------ALAVLAIIFAF--L-PLP  115 (310)
T ss_pred             --------cchhhhhhhhhHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH--c-cCC
Confidence                    00000  000  00001111111110                            10111111111  1 111


Q ss_pred             ccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHH
Q 009130          277 EDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVG  356 (543)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~  356 (543)
                      +.++                ++.++++      .++  .    ...++.+++|.++...+..++..+....+..|.+.|+
T Consensus       116 ~~~~----------------~~~~~~~------~~~--~----~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl  167 (310)
T TIGR01272       116 ELQE----------------ADVARVS------SGD--T----TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFL  167 (310)
T ss_pred             CCCc----------------ccccccc------ccc--c----cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1100                0000000      000  0    0113456788888888888888888888999999999


Q ss_pred             Hh---hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q 009130          357 ES---LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVG  433 (543)
Q Consensus       357 ~~---~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G  433 (543)
                      ++   .|+++++++...+.+..+.++||++.+++.||++++      +.+.++.++.+++.++....+.....+..++.|
T Consensus       168 ~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~------~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g  241 (310)
T TIGR01272       168 SDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG------RYLAFNAFLAVLLSIGAALTHGYVAMWFVLALG  241 (310)
T ss_pred             HhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            75   489999999999999999999999999999999654      345556555555554443323333344566889


Q ss_pred             hhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHH
Q 009130          434 VCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA  508 (543)
Q Consensus       434 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~  508 (543)
                      ++.+..+|...+...+.+|+ +.+++.++. ..+.+|+ .+.|++.|.+.|..|            .+.+|++..
T Consensus       242 ~~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg-~i~P~l~G~lad~~g------------~~~a~~v~~  301 (310)
T TIGR01272       242 LFNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGG-AIVPLLQGSLADCLG------------IQLAFALPV  301 (310)
T ss_pred             HHHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcc-hHHHHHHHHHHHhcc------------chHHHHHHH
Confidence            99999999988888888874 456666765 4456777 478889999999886            777777443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.77  E-value=9.2e-17  Score=158.80  Aligned_cols=186  Identities=16%  Similarity=0.170  Sum_probs=142.3

Q ss_pred             hHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhh----CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcC
Q 009130          321 NLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESL----HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLG  396 (543)
Q Consensus       321 ~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~  396 (543)
                      ...+++|+|++|.+.+........+..+....+.|.+++    +.+.+..+.+.++.-+..++.-.+..++.+|+|.|  
T Consensus       212 ~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k--  289 (412)
T PF01306_consen  212 DVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAK--  289 (412)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH--
Confidence            357889999999988876666566666666667666654    44556678888888888999999999999999654  


Q ss_pred             CCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHH-Hhhhhhhhhhh
Q 009130          397 WARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTI-SIACPVGSYIC  474 (543)
Q Consensus       397 ~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~  474 (543)
                          +.++++.+++.+=....+ .++++.+.+.-.+-++-.+.......=++.+.+|+|..++.+.+. +.+..++..+ 
T Consensus       290 ----~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i-  364 (412)
T PF01306_consen  290 ----NLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIII-  364 (412)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHH-
T ss_pred             ----hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHH-
Confidence                677778888888777776 567777777777878877777766777899999999999999996 6778888864 


Q ss_pred             hhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009130          475 SVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRT  525 (543)
Q Consensus       475 ~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  525 (543)
                      .+.+.|.++|..|            ++..|++++.+.+...+++.+..++.
T Consensus       365 ~s~~~G~lyd~~G------------~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  365 LSPLAGYLYDRIG------------FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HhhhHHhhHhhcC------------cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            4568999999998            99999999988887777777765443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.76  E-value=4.7e-16  Score=159.65  Aligned_cols=186  Identities=17%  Similarity=0.177  Sum_probs=147.3

Q ss_pred             hhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCC
Q 009130          320 MNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWA  398 (543)
Q Consensus       320 ~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~  398 (543)
                      ...+++.|.|+...+.+..++..-+...++.....+.+ ++|++..+...+..+..+..++|.+++|++.||+|.|.   
T Consensus       272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~---  348 (477)
T PF11700_consen  272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKT---  348 (477)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch---
Confidence            45567778888888888877765555555666666665 68999999999999999999999999999999998651   


Q ss_pred             chHHHHHHHHHH-HHHHHHHh--------hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhh
Q 009130          399 RPIFMVITLVAM-SIGHIAIA--------SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPV  469 (543)
Q Consensus       399 r~~~~~~~~~~~-~i~~~~~~--------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i  469 (543)
                       +.++..+.+.. .++...+.        ..+.+.+++..++.|+..|+..+..-++.+++.|+++.+.-+|+..+.+-.
T Consensus       349 -~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~  427 (477)
T PF11700_consen  349 -KRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKA  427 (477)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence             13444444333 33333222        345667888899999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          470 GSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       470 g~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      .+ .+||.+.|.+.|.+|+           .|.++....++.+++.++...+
T Consensus       428 ss-~lGPll~g~i~~~tg~-----------~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  428 SS-WLGPLLFGLITDATGS-----------QRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HH-HHHHHHHHHHHHHhCC-----------chhHHHHHHHHHHHHHHHHhhc
Confidence            98 4999999999999984           8899998888888888775444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.75  E-value=2.4e-15  Score=151.52  Aligned_cols=189  Identities=18%  Similarity=0.137  Sum_probs=137.2

Q ss_pred             hHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhC-CCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCc
Q 009130          321 NLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLH-YSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWAR  399 (543)
Q Consensus       321 ~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r  399 (543)
                      +..+++|+|++..+.+..++.....-.+..+.+.++++.| ++.+..+...++..++.++.-...+++..|++.      
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~------  272 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGI------  272 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------
Confidence            3468899999988877777766666667777888899987 787788888888888888877777777777754      


Q ss_pred             hHHHHHHHHHHHHHHHHHhhc-Cc-chHHHHH----HHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHh-hhhhhhh
Q 009130          400 PIFMVITLVAMSIGHIAIASG-FP-GNLFVGT----MIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISI-ACPVGSY  472 (543)
Q Consensus       400 ~~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~~----~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~ig~~  472 (543)
                      +.++.++.+..++=..+++.. ++ +..++..    .+-|+.++..+.....++.+..|++.+++++|+... ..++|. 
T Consensus       273 ~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~-  351 (400)
T PF03825_consen  273 KWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG-  351 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH-
Confidence            478888888888877776632 33 3322222    347899998888889999999999999999999864 567888 


Q ss_pred             hhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          473 ICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       473 i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .+|..++|+++|..|...      ...|...+.+.++..++..++..++.
T Consensus       352 ~iG~~igG~l~~~~g~~~------~~~~~~~~~v~a~~~~~~~~~f~~~f  395 (400)
T PF03825_consen  352 AIGSLIGGWLYDAFGARG------MFDWSAVFLVFAVMALVILVLFVILF  395 (400)
T ss_pred             HHHHHHHHHHHHHhcchh------hhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence            488899999999987311      11244455555555555555544443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.74  E-value=5.8e-16  Score=160.51  Aligned_cols=364  Identities=11%  Similarity=0.008  Sum_probs=223.9

Q ss_pred             HHHcCCcc-ccccccHHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHH
Q 009130           23 QCSVGTTY-TFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAIL  101 (543)
Q Consensus        23 ~~~~g~~~-~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~  101 (543)
                      .++-|..+ ......|.+.+++|++.++++.+.+...+.....+++|++.||++     .+|+     -||+.++++.++
T Consensus        35 y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~-----i~G~-----rRr~~l~~~~~l  104 (468)
T TIGR00788        35 LFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFP-----LFGY-----TKRWYLVLSGLL  104 (468)
T ss_pred             HHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCc-----cchHHHHHHHHH
Confidence            34445432 344667888889999999999777777788778888999999996     1222     156667777666


Q ss_pred             HH-HHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcc---hhHHHHHhhhhhHHHHHHH
Q 009130          102 CF-TGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGT---IVGILKGFVGLSGAVLTQV  177 (543)
Q Consensus       102 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~---~~gi~~~~~~lg~~i~~~l  177 (543)
                      .. +....     .+..++  ......+..++.+++.+...++.-....|..++++..   +.+......++|.++++.+
T Consensus       105 ~~~~~~~~-----l~~~~~--~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l  177 (468)
T TIGR00788       105 GSAILYGL-----LPGKVS--SAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLL  177 (468)
T ss_pred             HHHHHHHh-----cccccc--hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence            53 33222     333344  1444455888999999999999999999999844433   3344444455888999888


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Q 009130          178 YKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITF  257 (543)
Q Consensus       178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (543)
                      ++.+.+..+|+..+.+.....++..+...++                                                 
T Consensus       178 ~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~-------------------------------------------------  208 (468)
T TIGR00788       178 GGPLLDKTLTRILFLITAALLLLQLFVSNLS-------------------------------------------------  208 (468)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHhc-------------------------------------------------
Confidence            8888766667666554433222221111111                                                 


Q ss_pred             HHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHH
Q 009130          258 IILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIA  337 (543)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~  337 (543)
                                     +|++....  ++.++  .+     ........    ....+..++.....++.+++|..|...+.
T Consensus       209 ---------------~E~~~~~~--~~~~~--~~-----~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~i~~~l~f  260 (468)
T TIGR00788       209 ---------------KERRAFVR--PRIGT--YL-----EMNMALLT----LGVLANVKVQILGLRGAIQLLEIAKPLIF  260 (468)
T ss_pred             ---------------cccccccc--ccccc--cc-----hhhhhhhh----hhHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence                           11100000  00000  00     00000000    00000011112334566788888875544


Q ss_pred             HHh-h-hchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHH
Q 009130          338 TLC-G-MGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHI  415 (543)
Q Consensus       338 ~~~-~-~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~  415 (543)
                      .++ . .........+. ...+.+|+++++.+....+.+++.+++..+.+++.+|++      .+.++.++.++.+++.+
T Consensus       261 ifl~~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~------~r~~l~~~~~l~~~~~~  333 (468)
T TIGR00788       261 IFLSYANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFP------YRLLFGVTTLLYTLSSL  333 (468)
T ss_pred             HHHHHhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCC------HHHHHHHHHHHHHHHHh
Confidence            444 1 11111111111 111357999999999999999888888888888776664      44677777777766553


Q ss_pred             HHh-----h------cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 009130          416 AIA-----S------GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYD  484 (543)
Q Consensus       416 ~~~-----~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~  484 (543)
                      ...     .      ++........++.+++.+..+.....++.+..|+++.|+.+++.....++|.. +++.++|.+.+
T Consensus       334 ~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~-v~~~~gg~l~~  412 (468)
T TIGR00788       334 FDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSS-VSGFLGVLLME  412 (468)
T ss_pred             CceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            321     0      12223444566778888888888889999999999999999999998999984 88888999998


Q ss_pred             hccC
Q 009130          485 RVAS  488 (543)
Q Consensus       485 ~~g~  488 (543)
                      ..|.
T Consensus       413 ~~g~  416 (468)
T TIGR00788       413 TIGI  416 (468)
T ss_pred             HcCC
Confidence            8773

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.74  E-value=1.4e-15  Score=158.48  Aligned_cols=349  Identities=7%  Similarity=-0.044  Sum_probs=201.6

Q ss_pred             ccHHHHhhcCCChhhHHHH-HHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHH
Q 009130           35 YSSTLKSTQNYDQSTLERV-AVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASV  113 (543)
Q Consensus        35 ~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~  113 (543)
                      +..++++.+|+++.+++.+ ...-....+..++.|.++||.    |+|+||      ||+.++.+.+.++++..++.   
T Consensus        29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t----~sr~Gr------rrp~il~g~i~~~i~~~llf---   95 (473)
T PRK10429         29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNT----RSRWGK------FKPWILIGTLANSVVLFLLF---   95 (473)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcC----CCCCCC------cchhHhhhhHHHHHHHHHHH---
Confidence            4567788889999999944 444444455789999999985    355566      68888889888888876632   


Q ss_pred             hccCCCCC---hHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC--CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          114 VGLLPRPV---PVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG--HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       114 ~~~~~~~~---~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp--~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                        ..++..   .+..+++..++.+++..+..++-.+...+.-+  ++|.+..+.-..+.++|+.+.+.+...++      
T Consensus        96 --~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~------  167 (473)
T PRK10429         96 --SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFV------  167 (473)
T ss_pred             --cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence              222110   13334455566677777777777778888773  57998888866666666665543322211      


Q ss_pred             HHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          189 YILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                                          ...+.. ++...+.    ..+...+                         +..++.....
T Consensus       168 --------------------~~~g~~-~~~~g~~----~~~~i~~-------------------------~~~~~~~~~~  197 (473)
T PRK10429        168 --------------------NYVGGG-DRGFGFQ----MFTLVLI-------------------------AFFIVSTIIT  197 (473)
T ss_pred             --------------------HHhCCC-chhhhHH----HHHHHHH-------------------------HHHHHHHHHH
Confidence                                000000 0000000    0100000                         0001111111


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIAT  348 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~  348 (543)
                      ....||+++..+                ++.           +++++.+.....+.+++|+.++.+.+..++........
T Consensus       198 ~~~~~e~~~~~~----------------~~~-----------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~  250 (473)
T PRK10429        198 LRNVHEVYSSDN----------------QVS-----------AEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNII  250 (473)
T ss_pred             HcCceecCCccc----------------ccc-----------ccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            111122110000                000           00000111233455678999888777766665444444


Q ss_pred             hhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh------hcCc
Q 009130          349 MNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA------SGFP  422 (543)
Q Consensus       349 ~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~------~~~~  422 (543)
                      ....+++.+...-++...+.+.+...+..+++.+++++++||+|+|      +.+.++.++.+++.+.+.      ..+.
T Consensus       251 ~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (473)
T PRK10429        251 NGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRR------ILWAGASIFPVLSCGVLLLMGLAAPHNA  324 (473)
T ss_pred             hhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH------HHHHHHHHHHHHHHHHHHHHhccCchhH
Confidence            4444444444433555566666777788899999999999999754      455555554444333221      1222


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcC-------CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccC
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFG-------VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS  488 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~  488 (543)
                      ..+++..++.|++.+...+..+++++|..+       .+..|..+|......-++.. +++.+.|.+.+..|.
T Consensus       325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~a-l~~~i~g~~l~~~Gy  396 (473)
T PRK10429        325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSA-FAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence            334555667788888888888888888844       45567788998888888874 778888998887764

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.72  E-value=3.3e-15  Score=152.42  Aligned_cols=386  Identities=13%  Similarity=0.039  Sum_probs=216.1

Q ss_pred             HHHHhhcCCChhhHHHHHHHhh-hcccccchhhHhhhhcccccccccccccccCCchHHHHH-HHHHHHHHHHHHHHHHh
Q 009130           37 STLKSTQNYDQSTLERVAVFKD-MGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFT-GAILCFTGYFLVWASVV  114 (543)
Q Consensus        37 ~~l~~~~~~s~~~~~~~~~~~~-~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~-g~~~~~~g~~~~~~~~~  114 (543)
                      +.+.+++|.+..+.+.+..... .+.+.+++.|.++||--           .|+|||+.++. +.+...++..+     .
T Consensus        28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~-----------sr~GRRrp~il~g~~~~~~~l~l-----l   91 (477)
T TIGR01301        28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCT-----------SRFGRRRPFIAAGAALVAFAVIL-----I   91 (477)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCC-----------CCCCChHHHHHHHHHHHHHHHHH-----H
Confidence            3456789999999995544444 44458999999999631           23337777666 46666666666     3


Q ss_pred             ccCCCCC-----------hH---HHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCC--cchhHHHHHhhhhhHHHHHHH
Q 009130          115 GLLPRPV-----------PV---PLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYS--GTIVGILKGFVGLSGAVLTQV  177 (543)
Q Consensus       115 ~~~~~~~-----------~~---~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~r--g~~~gi~~~~~~lg~~i~~~l  177 (543)
                      +++++..           ..   +.+++.-.+..++.+...++..++++|.+| ++|  +.+.++.....++|+++++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~  171 (477)
T TIGR01301        92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA  171 (477)
T ss_pred             HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333210           00   122223334445777788888899999998 433  689999999999999999877


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCccc-c----hhhhhHHHHHHHHHHHHHHHHHHhhcccchhhH
Q 009130          178 YKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDD-K----KHLNAFSAVAMTLAAYFMVITVMENLLTFSLWA  252 (543)
Q Consensus       178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (543)
                      ++....                        ....|...++. +    +....| .++.                      
T Consensus       172 g~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~F-~i~a----------------------  204 (477)
T TIGR01301       172 GAYSGL------------------------YKIFPFTKTEACGVSCANLKSCF-LIDI----------------------  204 (477)
T ss_pred             HHHHhH------------------------HHhcccccccccccccchHHHHH-HHHH----------------------
Confidence            664310                        00000000000 0    011111 1110                      


Q ss_pred             HHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhc--chh
Q 009130          253 RIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMC--TGN  330 (543)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  330 (543)
                            +.+++.........+|.+...+   + +   .    +++|.+++       ++.+ .........+.++  -+.
T Consensus       205 ------~~l~i~~l~t~~~v~E~~~~~~---~-~---~----~~~~~~~~-------~~~~-~~~~~~~i~~~~~~mP~~  259 (477)
T TIGR01301       205 ------ILLAILTYIALSAVKENPLIGS---D-D---F----INSEAAPP-------SKHG-EEAFFGELFGAFKYLPRP  259 (477)
T ss_pred             ------HHHHHHHHHHeeeeeccCCCcc---c-c---c----hhhhcccc-------cccc-hhhhHHHHHHHHHHCCHH
Confidence                  1111112222222333221100   0 0   0    00000000       0000 0001112222222  367


Q ss_pred             HHHHHHHHHhhhchhhhhhhchHHHHHh--hCCCch------hh---H-HHHHHHHHHHhhhccccccchhhhhhhcCCC
Q 009130          331 FWFLCIATLCGMGSGIATMNNIAQVGES--LHYSTT------EI---N-SLISLWSIWNFFGRFGAGYGSDVFLHKLGWA  398 (543)
Q Consensus       331 f~~~~l~~~~~~~~~~~~~~~~~~~~~~--~g~s~~------~a---~-~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~  398 (543)
                      +|.+++..++.+.+.+.+..+..++..+  ++-++.      +.   + +....+++...+.+++.-++.+|+|     +
T Consensus       260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g-----~  334 (477)
T TIGR01301       260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWG-----A  334 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c
Confidence            8999999999999888887777766543  232221      11   1 2223334444444444444444443     2


Q ss_pred             chHHHHHHHHHHHHHHHHHh-hcC---------------------cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCC--c
Q 009130          399 RPIFMVITLVAMSIGHIAIA-SGF---------------------PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGV--R  454 (543)
Q Consensus       399 r~~~~~~~~~~~~i~~~~~~-~~~---------------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~  454 (543)
                      |+.+..++.++.++++.... ..+                     .+..++...+.|+..+...++.++++++..++  +
T Consensus       335 ~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~  414 (477)
T TIGR01301       335 GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGA  414 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCC
Confidence            34666677666666655432 111                     13455667788999999999999999999984  5


Q ss_pred             chhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 009130          455 HMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTR  526 (543)
Q Consensus       455 ~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  526 (543)
                      +.|...|+.|....+..+ +.....|.+.+..|+          +-.+.+.+.++..++++++++++.++.+
T Consensus       415 ~~G~~mgilN~~I~lpQi-i~sl~~g~~~~~~g~----------~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       415 GQGLSMGVLNLAIVIPQI-IVSLGSGPWDQLFGG----------GNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             CCcchhhHHHHHHHHHHH-HHHHHHHHHHHHcCC----------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            669999999998888875 444566776666653          2456788888888899988888776654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.72  E-value=4.4e-16  Score=160.41  Aligned_cols=350  Identities=13%  Similarity=0.082  Sum_probs=226.5

Q ss_pred             cccHHHHhhcCCChhhHHHHHHH-hhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHH
Q 009130           34 IYSSTLKSTQNYDQSTLERVAVF-KDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWAS  112 (543)
Q Consensus        34 ~~~~~l~~~~~~s~~~~~~~~~~-~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~  112 (543)
                      .+.+.+.+.+|+++...+.+... -....+..++.|.++||.    |+|+||      ||+.+++|.++.+++..++...
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~----~tr~Gr------rrp~~l~g~i~~~~~~~llf~~   92 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRT----RTRWGR------RRPWILIGAILLALSFFLLFSP   92 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeee----cccccc------cceEeehhhHHHHHHHHHhhcc
Confidence            34567788899999999955444 444455899999999975    366777      8888889999999988884321


Q ss_pred             -HhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC--CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhH
Q 009130          113 -VVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG--HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY  189 (543)
Q Consensus       113 -~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp--~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~  189 (543)
                       +....... ....+++..++..++......+-.+...+..+  ++|.+..+.-..+..+|..+.+.+...+.+      
T Consensus        93 ~p~~~~~~~-~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~------  165 (428)
T PF13347_consen   93 PPAGLSFTA-KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVS------  165 (428)
T ss_pred             ccchhhhhh-HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh------
Confidence             11111110 12334556666688888888888888899996  479999999888888877666555444321      


Q ss_pred             HHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccc
Q 009130          190 ILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLR  269 (543)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (543)
                                          ..+.+. ..+++......++                             +...+......
T Consensus       166 --------------------~~g~~~-~~~~~~~~~~v~~-----------------------------iv~~v~~~i~~  195 (428)
T PF13347_consen  166 --------------------WFGGGD-TSNGYRWMALVLA-----------------------------IVGLVFFLITF  195 (428)
T ss_pred             --------------------hhccCc-cchHHHHHHHHHH-----------------------------HHHHHHhhhhh
Confidence                                011000 0001111111111                             01111111111


Q ss_pred             cccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhh
Q 009130          270 VAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATM  349 (543)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~  349 (543)
                      ...||+.++.                              ++++++.+.....++.++||.++.+.+..++.........
T Consensus       196 ~~~ke~~~~~------------------------------~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~  245 (428)
T PF13347_consen  196 FFVKERSVEV------------------------------TEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMN  245 (428)
T ss_pred             heeeeccccc------------------------------cccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhh
Confidence            1112200000                              0011111223446788899999988888887766665556


Q ss_pred             hchHHHHHhh-CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-h--cCcchH
Q 009130          350 NNIAQVGESL-HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-S--GFPGNL  425 (543)
Q Consensus       350 ~~~~~~~~~~-g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~--~~~~~~  425 (543)
                      ...+++.++. |.+ ...+....+..+...++.+++++++||+|+|      +.+..+.++.+++.+++. .  .+.+..
T Consensus       246 ~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (428)
T PF13347_consen  246 TFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKK------KVYIIGLLLAALGFLLLFFLGPGSPWLV  318 (428)
T ss_pred             hHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccce------eehhhhHHHHHHHHHHHHHHHhhhHHHH
Confidence            6667777664 544 5667777888999999999999999999765      466677777776665544 2  466778


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcC-------CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccC
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFG-------VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS  488 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~  488 (543)
                      ++..++.|++.+..+...+++.+|..+       +++.|..+|+.+...-++.. +++.+.+.+.+..|.
T Consensus       319 ~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~-la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  319 LILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG-LAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH-HHHHHHHHHHHHhCc
Confidence            888889999999999888899988876       34568888998888888874 667778888777664

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.72  E-value=2.2e-16  Score=149.49  Aligned_cols=333  Identities=10%  Similarity=0.005  Sum_probs=199.1

Q ss_pred             HHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHH
Q 009130           50 LERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCL  128 (543)
Q Consensus        50 ~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  128 (543)
                      .|.+++.+.+.-. .++.+|.++||||               ||+++++|++..++.+.+     -+.+.+   +..+..
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yG---------------Rkpvll~c~~~va~s~ll-----~~~S~~---F~afv~  126 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYG---------------RKPVLLACLIGVALSYLL-----WALSRN---FAAFVL  126 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhC---------------chHHHHHHHHHHHHHHHH-----HHHHHH---HHHHHH
Confidence            3477777777765 6888999999998               999999999999998888     444454   756666


Q ss_pred             HHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHH
Q 009130          129 FIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCN---GNPSTYILVLALLPTLVSLLF  204 (543)
Q Consensus       129 ~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~  204 (543)
                      .|++.|+.-|-.. +..++++|.++ ++|+++++.+...+++|-++||.+++++..   .....++.+.+....+.    
T Consensus       127 aR~l~Gi~kgnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~----  201 (451)
T KOG2615|consen  127 ARFLGGIFKGNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFIL----  201 (451)
T ss_pred             HHHhhhhccCchH-HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHH----
Confidence            7999999988764 46789999997 689999999999999999999999998743   11111111101100000    


Q ss_pred             HhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCC
Q 009130          205 MSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPK  284 (543)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (543)
                                                                              .......+.+..+|+...+++.  
T Consensus       202 --------------------------------------------------------a~~~v~~~~~~lpETL~~rk~~--  223 (451)
T KOG2615|consen  202 --------------------------------------------------------AAGDVTFFPWFLPETLPLRKRN--  223 (451)
T ss_pred             --------------------------------------------------------HHHHHHHHHHhCCccccchhhc--
Confidence                                                                    0000000111122221111111  


Q ss_pred             CCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhH------HH-HHHHHHhhhchhhhhhhchHHHH-
Q 009130          285 LSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNF------WF-LCIATLCGMGSGIATMNNIAQVG-  356 (543)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f------~~-~~l~~~~~~~~~~~~~~~~~~~~-  356 (543)
                         .|..+..+.  .+++++..+      ..+   .....+++|++-      |. +.+..+.....+..+.++...+. 
T Consensus       224 ---~~~~~~~~~--~~~~~~~~~------~~~---~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~  289 (451)
T KOG2615|consen  224 ---DEHSTLQEA--ADDRLALLK------FAR---IFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTH  289 (451)
T ss_pred             ---ccccchhhh--hhhhhhhcc------hhh---hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence               000000000  000000000      000   000111222211      11 11111222111222222223222 


Q ss_pred             HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhh
Q 009130          357 ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVC  435 (543)
Q Consensus       357 ~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~  435 (543)
                      ..+|+++.+.+.+.+..++.+.+-+.......||.+..    -+-.+...+..+.-..+++. ...+..++....+..+.
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~----~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~  365 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN----IKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFS  365 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccc----hhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence            34699999999999999988888887777777776421    11223333333333333333 34556677788888888


Q ss_pred             hhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          436 YGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       436 ~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      .....+....++....|++++|++.|+....++++-. +||.+.|.+..+..
T Consensus       366 ~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRa-iGPlv~g~i~~Ws~  416 (451)
T KOG2615|consen  366 TASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARA-IGPLVSGVIFSWSQ  416 (451)
T ss_pred             HHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH-hhhhhhheeEEEec
Confidence            7777888889999999999999999999999999995 89988888877653

>PRK11462 putative transporter; Provisional

Probab=99.70  E-value=1.6e-14  Score=149.65  Aligned_cols=345  Identities=9%  Similarity=0.016  Sum_probs=187.7

Q ss_pred             ccHHHHhhcCCChhhHHHHHHH-hhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHH
Q 009130           35 YSSTLKSTQNYDQSTLERVAVF-KDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASV  113 (543)
Q Consensus        35 ~~~~l~~~~~~s~~~~~~~~~~-~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~  113 (543)
                      +.....+..|+++..++.+... -..-.+.-++.|.++||.    |+|+||      ||+-+++|.+.++++.+++...+
T Consensus        32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t----~~r~Gr------~rp~il~g~i~~~i~~~llf~~p  101 (460)
T PRK11462         32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRT----RSRWGK------FRPWVLFGALPFGIVCVLAYSTP  101 (460)
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccC----CCCCCC------cchhHhHHHHHHHHHHHHHHhCC
Confidence            4456678899999999954444 344445789999999985    467777      88888889888888877733211


Q ss_pred             hccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC--CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHH
Q 009130          114 VGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG--HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYIL  191 (543)
Q Consensus       114 ~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp--~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~  191 (543)
                       ....+. ....+++..++..++..+...+-.+...+.-+  +||.+..++-..+..+|..+++.+...+.+        
T Consensus       102 -~~s~~~-~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~--------  171 (460)
T PRK11462        102 -DLSMNG-KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVN--------  171 (460)
T ss_pred             -CCCcch-HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence             111111 12334445556677777777766677777775  579999999988888887777654332210        


Q ss_pred             HHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccc
Q 009130          192 VLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVA  271 (543)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (543)
                                        ..+.+ ++...+.....+++                             ++..+........
T Consensus       172 ------------------~~g~~-~~~~g~~~~~~i~~-----------------------------ii~~i~~~i~~~~  203 (460)
T PRK11462        172 ------------------LIGGD-NKPLGFQGGIAVLS-----------------------------VVAFMMLAFCFFT  203 (460)
T ss_pred             ------------------HhCCC-chhhhHHHHHHHHH-----------------------------HHHHHHHHHHHhc
Confidence                              00100 00000111110111                             0000111011101


Q ss_pred             cccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhc
Q 009130          272 ITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNN  351 (543)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~  351 (543)
                      .||+++++                              ++   +.+.....+..++|+.++.+....++...........
T Consensus       204 ~kE~~~~~------------------------------~~---~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~  250 (460)
T PRK11462        204 TKERVEAP------------------------------PT---TTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGA  250 (460)
T ss_pred             ceeccCCC------------------------------cc---CCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH
Confidence            11110000                              00   0011234567788988877765554443333222233


Q ss_pred             hHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHH-HHHHHhhcC--cchHHHH
Q 009130          352 IAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSI-GHIAIASGF--PGNLFVG  428 (543)
Q Consensus       352 ~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~~~--~~~~~~~  428 (543)
                      ..++.+...-++...+.+.....++++++.+++++++||+++|      ..+..+.+..++ +.+.+..++  ....++.
T Consensus       251 ~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (460)
T PRK11462        251 MMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKV------TIFWWTNALLAVISLAMFFVPMQASITMFVF  324 (460)
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Confidence            3334443322333445566788888899999999999999754      333323222222 222222222  2233444


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhcC-------CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          429 TMIVGVCYGSQWSLMPTITSEIFG-------VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       429 ~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      .++.|++.+...+...++++|..+       .+.-|..++......-+|.. +++.+.|.+.+..|
T Consensus       325 ~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a-lg~~i~g~iL~~~G  389 (460)
T PRK11462        325 IFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA-FGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence            556677766666655667776654       34446666666666666663 56667777776654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.4e-13  Score=137.64  Aligned_cols=353  Identities=11%  Similarity=0.032  Sum_probs=217.1

Q ss_pred             ccHHHHhhcCCChhhHHHH-HHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHH
Q 009130           35 YSSTLKSTQNYDQSTLERV-AVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASV  113 (543)
Q Consensus        35 ~~~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~  113 (543)
                      +.-..++.+|+++...|.+ ...=.+-++.-++.|.+.||.    +.|+||      +||-++.+.+.+++.+.+.....
T Consensus        35 Ll~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t----~~r~Gr------fRP~lL~g~ip~~i~~~l~F~~p  104 (467)
T COG2211          35 LLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRT----RSRWGR------FRPWLLWGAIPFAIVAVLLFITP  104 (467)
T ss_pred             HHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccc----cccccc------ccHHHHHHhHHHHHHHHHHHcCC
Confidence            3346678899999999944 444444455789999999975    378888      88889999999999888844322


Q ss_pred             hccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC--CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHH
Q 009130          114 VGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG--HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYIL  191 (543)
Q Consensus       114 ~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp--~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~  191 (543)
                      -.-...  .....++-..+.+++-.+...+-.+..++.-+  +||.+..+.-+.+.++|..+...+...+.         
T Consensus       105 ~~~~~~--k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv---------  173 (467)
T COG2211         105 DFSMTG--KLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLV---------  173 (467)
T ss_pred             CcccCc--chHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            100012  35556667778888888888877777788774  68998888888888777666654433322         


Q ss_pred             HHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccc
Q 009130          192 VLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVA  271 (543)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (543)
                                       ...+.++ ...++......++                             +...+..+++...
T Consensus       174 -----------------~~~g~~~-~~~g~~~~~~~~~-----------------------------vi~~i~~l~~~~~  206 (467)
T COG2211         174 -----------------KLFGGGD-KALGYQGTALVLG-----------------------------VIGVILLLFCFFN  206 (467)
T ss_pred             -----------------HHhCCCc-chhhHHHHHHHHH-----------------------------HHHHHHHHHHHHH
Confidence                             1111100 0111111110111                             1111111222222


Q ss_pred             cccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhc
Q 009130          272 ITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNN  351 (543)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~  351 (543)
                      .||+..+.+                  +          .+...+.+........++|+++..+++...+...........
T Consensus       207 v~ER~~~~~------------------~----------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~  258 (467)
T COG2211         207 VKERVVETQ------------------P----------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSI  258 (467)
T ss_pred             hhcccCccc------------------c----------CcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhh
Confidence            233222111                  0          000011112233456789999988888666554433333333


Q ss_pred             hHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hc--CcchHHH
Q 009130          352 IAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SG--FPGNLFV  427 (543)
Q Consensus       352 ~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~--~~~~~~~  427 (543)
                      ..+|.+. +|.++............+.+++.++...+.+|+|+|      +++..+.++.+++.+.+. .+  +....++
T Consensus       259 ~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk------~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~  332 (467)
T COG2211         259 MVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKK------KLFLIGLLLLAVGYLLLYFTPAGSVVLIVV  332 (467)
T ss_pred             hheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH------HHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Confidence            3444443 477777777777788888888899999999999654      677778888777776654 22  3344555


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhcC-------CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC
Q 009130          428 GTMIVGVCYGSQWSLMPTITSEIFG-------VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE  490 (543)
Q Consensus       428 ~~~l~G~~~g~~~~~~~~~~~~~~~-------~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~  490 (543)
                      ..++.+++.+...+...++++|..+       .+.-|..+|.+....=+|.. ++..+.|++.+..|..+
T Consensus       333 ~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a-la~~~~g~~L~~~Gyv~  401 (467)
T COG2211         333 ALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA-LAGFIPGWILGAIGYVP  401 (467)
T ss_pred             HHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCC
Confidence            6678889999998888899887754       34457888888766666664 55557777777776443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.63  E-value=5.6e-14  Score=136.11  Aligned_cols=184  Identities=16%  Similarity=0.167  Sum_probs=144.5

Q ss_pred             hhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCC
Q 009130          320 MNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWA  398 (543)
Q Consensus       320 ~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~  398 (543)
                      .+.++.+++++...+.+..++..=+..........+.. ++|++..+...+....++..+.|.++.|++.||++.|    
T Consensus       243 ~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k----  318 (438)
T COG2270         243 STFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSK----  318 (438)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----
Confidence            45677777787777666666654444445555555665 7899999999999999999999999999999999754    


Q ss_pred             chHHHHHHHHHHHHHHH-HHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhh
Q 009130          399 RPIFMVITLVAMSIGHI-AIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVR  477 (543)
Q Consensus       399 r~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~  477 (543)
                        +++..++++..+.++ .+....+..+++..+++|+..|+..+..-++..+..|+++.+..+|+.++.+..++ +++|+
T Consensus       319 --~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S-~~gp~  395 (438)
T COG2270         319 --PVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAAS-FLGPF  395 (438)
T ss_pred             --eeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHH-HHHHH
Confidence              455566655554444 34344566677778899999999999999999999999999999999999999999 49999


Q ss_pred             hhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          478 IIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       478 l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      +.+.+.+.+|+           -|..+.....+..++.++...+
T Consensus       396 lv~v~t~iTg~-----------~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         396 LVAVITQITGS-----------SRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             HHHHHHHHhcc-----------hhhHHHHHHHHHHhhHhhEEee
Confidence            99999999985           7788887777777776654333

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.62  E-value=1e-12  Score=130.22  Aligned_cols=416  Identities=10%  Similarity=-0.016  Sum_probs=242.9

Q ss_pred             cccc-ccccHHHHhhcC----CChhhHH-HHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHH
Q 009130           29 TYTF-SIYSSTLKSTQN----YDQSTLE-RVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILC  102 (543)
Q Consensus        29 ~~~~-~~~~~~l~~~~~----~s~~~~~-~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~  102 (543)
                      .|.+ +++..++..+++    +++++.. +.+.+..+.+...+++|+++||+              +|+|++++.|.++.
T Consensus        37 yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~--------------LG~~~tI~lGail~  102 (498)
T COG3104          37 YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV--------------LGTRRTIVLGAILM  102 (498)
T ss_pred             hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh--------------cchhHHHHHHHHHH
Confidence            3443 456677777777    9999887 77888888888899999999998              48999999999999


Q ss_pred             HHHHHHHHHHHhccCC-CCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-C--CCcchhHHHHHhhhhhHHHHHHHH
Q 009130          103 FTGYFLVWASVVGLLP-RPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-H--YSGTIVGILKGFVGLSGAVLTQVY  178 (543)
Q Consensus       103 ~~g~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~--~rg~~~gi~~~~~~lg~~i~~~l~  178 (543)
                      ++|.++     .+..+ .  ....+.+.-++.++|.|..-+...+++.|.+| +  +|-...++...+-++|+.+.|.+.
T Consensus       103 ~iGh~~-----L~~~~~~--~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~  175 (498)
T COG3104         103 AIGHLV-----LAISSVS--GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT  175 (498)
T ss_pred             HHHHHH-----Hhccccc--cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence            999999     44432 2  15667777777779999999999999999996 3  578889999999999999999999


Q ss_pred             HHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCC------cccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhH
Q 009130          179 KTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNS------VDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWA  252 (543)
Q Consensus       179 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (543)
                      +++.++.+|+.-|-.+.+-...+++..+..+..-.+.      ...+.........++.........   -.......+.
T Consensus       176 ~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~  252 (498)
T COG3104         176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALL---TLLLNQNTFS  252 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            9999999999999999999888888777665321111      011111111111111111111100   0011111111


Q ss_pred             HHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHH
Q 009130          253 RIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFW  332 (543)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  332 (543)
                      +.... ..+...........+.     +                             +..+ ++      +++   ..+.
T Consensus       253 ~~~~~-~~i~~~~~~~~~~~~~-----~-----------------------------~~~~-er------~r~---~~~~  287 (498)
T COG3104         253 GVLLV-ISILIAIIYFAEAFRS-----P-----------------------------KVFD-ER------RRL---LAAI  287 (498)
T ss_pred             HHHHH-HHHHHHHHHHHHHhcc-----C-----------------------------ccHH-HH------HHH---HHHH
Confidence            11111 1111111110000000     0                             0000 00      011   1111


Q ss_pred             HHHHHHHhhhchhhhhhhchHHHHH---h---hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchH-HHHH
Q 009130          333 FLCIATLCGMGSGIATMNNIAQVGE---S---LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPI-FMVI  405 (543)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~---~---~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~-~~~~  405 (543)
                      .+++...+.+..+.-..+.+..+.+   +   .|++ -..++..++..+.-++..++..++-.|.+++++..+.+ -..+
T Consensus       288 ~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFal  366 (498)
T COG3104         288 PLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFAL  366 (498)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHH
Confidence            1111111111111111112222222   1   2322 34566777888888888888888888866654333222 2444


Q ss_pred             HHHHHHHHHHHHh-----hc------CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhh
Q 009130          406 TLVAMSIGHIAIA-----SG------FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYIC  474 (543)
Q Consensus       406 ~~~~~~i~~~~~~-----~~------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~  474 (543)
                      +..++..+++++.     ..      +.++++...++.+++--...+...+++....|+.-.+...+...+....+.. +
T Consensus       367 Gl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~-l  445 (498)
T COG3104         367 GLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQT-L  445 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-h
Confidence            5555555544332     11      2345666777888888888888889999999999999999999888888774 4


Q ss_pred             hhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          475 SVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       475 ~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      +..+.+...+ ++     ..+....+...|+..+...++..+..+.+
T Consensus       446 ~g~va~~~~~-~~-----~~~~~~~~~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         446 GGQVAGLTAV-TD-----PAYTAFIEGRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             hceecccccc-cc-----hhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            4334442111 00     00011135566776666555555444433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.62  E-value=1.1e-12  Score=127.61  Aligned_cols=375  Identities=12%  Similarity=0.034  Sum_probs=232.6

Q ss_pred             HHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 009130           37 STLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGL  116 (543)
Q Consensus        37 ~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~  116 (543)
                      -.+..|++++..-.+.......+..-..+..|..+|+++    +-+|+     -|-+-++.|.++++.+..+......-.
T Consensus         4 RVMIvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~----s~~G~-----rRtPyI~~G~~~~~~g~~~ap~a~~~l   74 (403)
T PF03209_consen    4 RVMIVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHP----SILGW-----RRTPYIWGGTLLQAGGLAIAPFALLLL   74 (403)
T ss_pred             hhHHHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCc----ccCcC-----CchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            456778999988888554554544456788999999864    23333     133446677777777666544332222


Q ss_pred             CC-------CCChHHH--HHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCc
Q 009130          117 LP-------RPVPVPL--MCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNP  186 (543)
Q Consensus       117 ~~-------~~~~~~~--~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~  186 (543)
                      ..       +. ..+.  ....-++.|+|.+...++-.+.++|.-| ++|+++.++.....-+|.+++..+.+.+.++++
T Consensus        75 ~~~~~~~~~~~-~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   75 AESGQQSSGPF-WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             ccccccccccc-HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            23       21 1222  2335678999999999999999999997 689999999999999999999888887765432


Q ss_pred             h-hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhh
Q 009130          187 S-TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLA  265 (543)
Q Consensus       187 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (543)
                      . +..-.....+.+.                                                          .++.++.
T Consensus       154 ~~rL~~v~~~~a~i~----------------------------------------------------------~~l~~ia  175 (403)
T PF03209_consen  154 PERLIQVIQGVALIA----------------------------------------------------------LLLNLIA  175 (403)
T ss_pred             HHHHHHHHHHHHHHH----------------------------------------------------------HHHHHHH
Confidence            1 1111111111000                                                          0000000


Q ss_pred             cccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchh
Q 009130          266 SPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSG  345 (543)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~  345 (543)
                      .     ++.+++.++                . .+         .+++++.+....+++.+.+|+...+....++....+
T Consensus       176 ~-----wg~E~r~~~----------------~-~~---------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~  224 (403)
T PF03209_consen  176 L-----WGQEPRRSR----------------R-AA---------AAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAF  224 (403)
T ss_pred             H-----HhcccCCcc----------------c-cc---------CCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            0     111111110                0 00         001111222344567777777766666555554444


Q ss_pred             hhhhhchHHHH-HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH--h--hc
Q 009130          346 IATMNNIAQVG-ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAI--A--SG  420 (543)
Q Consensus       346 ~~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~--~--~~  420 (543)
                      +.-...+-+|. +.+|++..+...+....+.+..+|-...|++..|-.     +++....+++...++++.++  +  ..
T Consensus       225 ~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~-----~~~~~a~~G~~~~~~~f~lii~a~~~~  299 (403)
T PF03209_consen  225 FMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRL-----GKKRTAALGCLLGALAFALIILAGPLG  299 (403)
T ss_pred             HhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33333333444 346999999999999999999999999998877422     22234445555555544432  2  34


Q ss_pred             CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130          421 FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF  500 (543)
Q Consensus       421 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~  500 (543)
                      +++.+....+++|++.|......-+.+.++..+++.|...|.+..+++++.. ++..++|.+.|....-.+.  ....+|
T Consensus       300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G-lg~~~GG~~~D~~~~~~~~--~~~~aY  376 (403)
T PF03209_consen  300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG-LGTFLGGALRDLVRALFGN--SPALAY  376 (403)
T ss_pred             cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccC--CcchHH
Confidence            5677888899999999987777777888999999999999999999888874 6777888877753210000  012358


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 009130          501 MLSFMIMAFVAFFGSLVA  518 (543)
Q Consensus       501 ~~~f~~~~~~~~~~~i~~  518 (543)
                      ...|.+-+...+++.++.
T Consensus       377 ~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  377 GVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888887777776666553

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.3e-13  Score=135.10  Aligned_cols=176  Identities=13%  Similarity=0.181  Sum_probs=159.3

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      ...+.+.++.|......+.....+|++.+|+|.|..+++.+.+.|+.+..++.++...+.||+      +||+++...+.
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~------~Rr~lLl~~l~   86 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL------ERRRLLLGLLA   86 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHHH
Confidence            345667777777777888899999999999999999999999999999999999999999999      55688888999


Q ss_pred             HHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          409 AMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       409 ~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      +.+++.++.+ .++...+.++.++.|+..|..++...+++.++.|+++++++.++++.+..++. ++|.+++.++.|..|
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~-v~GvPLGt~ig~~~G  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT-VLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH-HHhccHHHHHHHHhh
Confidence            9999988777 57778899999999999999999999999999999999999999999999998 589889999999998


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          488 SGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       488 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                                  ||.+|++.+++.++..+..+...+
T Consensus       166 ------------WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         166 ------------WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                        999999999999888887776666

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.48  E-value=5e-15  Score=154.28  Aligned_cols=394  Identities=14%  Similarity=-0.001  Sum_probs=3.0

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      +.....++++|+++.+|.|++.+.+-++.. ..++..++.+|..               |-+.+-+|.+++++|++++++
T Consensus        23 ~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~h---------------rprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   23 NSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGH---------------RPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------------CcceeeecHHHHHHHHHHHhc
Confidence            345579999999999999999999999886 5667778877754               555577788888888888654


Q ss_pred             --HHhcc-------------------C---------------------CCCChHHHHHHHHHHHhcCcchhhhhHHHHHh
Q 009130          112 --SVVGL-------------------L---------------------PRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGV  149 (543)
Q Consensus       112 --~~~~~-------------------~---------------------~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~  149 (543)
                        ...+-                   .                     .....+..++++.++.|+|....++...+++-
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence              00100                   0                     00002455667899999999999999999999


Q ss_pred             hhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHH
Q 009130          150 MNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAV  228 (543)
Q Consensus       150 ~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (543)
                      |+.+ ++-+..+|+..+...+|+++|-.+++...+-                      ++. .+..+.+.          
T Consensus       168 Dnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~----------------------yvD-~~~~~~~~----------  214 (539)
T PF03137_consen  168 DNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRI----------------------YVD-FPKVPPDG----------  214 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCccchhhhhHHhhccHHHHHHHHHHHHhc----------------------eeC-CccccccC----------
Confidence            9997 5688999999999999999997776655321                      111 11100000          


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHH--HHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchh
Q 009130          229 AMTLAAYFMVITVMENLLTFSLWAR--IITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVT  306 (543)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (543)
                                ..+..+...|-..+|  .++.+.+.++..+|+..+-|+-|+.++..++.+.++.+...++++...+++..
T Consensus       215 ----------~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (539)
T PF03137_consen  215 ----------VGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSK  284 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccc
Confidence                      000111222222222  23333445555666655444433331111111111101000000000000000


Q ss_pred             cccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHH-HHhhhcccc
Q 009130          307 AAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSI-WNFFGRFGA  384 (543)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i-~~~ig~~~~  384 (543)
                        ....+..+......+++++||.|....+...+......++..+.|.|++. ++.++++++.+.....+ +.++|.+++
T Consensus       285 --~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llG  362 (539)
T PF03137_consen  285 --KSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLG  362 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --cchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheE
Confidence              00001122334567889999999999998888877788889999999975 69999999998876655 677899999


Q ss_pred             ccchhhhhhhcCCCchHHHHHHHHHHHHH---HHHHhhc--------Ccc------------------------------
Q 009130          385 GYGSDVFLHKLGWARPIFMVITLVAMSIG---HIAIASG--------FPG------------------------------  423 (543)
Q Consensus       385 G~lsD~~~~~~~~~r~~~~~~~~~~~~i~---~~~~~~~--------~~~------------------------------  423 (543)
                      |++..|+.-+.+ +-.+...+..++..+.   .+++..+        .++                              
T Consensus       363 G~ivkk~kl~~~-~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G  441 (539)
T PF03137_consen  363 GYIVKKFKLSAR-GAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPG  441 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEecCcHH-HHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCC
Confidence            999999864421 1111111122221111   1111000        000                              


Q ss_pred             --------hHHHH---HHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          424 --------NLFVG---TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       424 --------~~~~~---~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                              .++..   .++.-+..+........++-...++++|+.+.|+..+...+-+.+=+|+++|.+.|.+-
T Consensus       442 ~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~tC  516 (539)
T PF03137_consen  442 KCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDSTC  516 (539)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             CcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhhh
Confidence                    01111   11111222222233334556788999999999999766665555788999999999763

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.47  E-value=6.7e-13  Score=137.00  Aligned_cols=173  Identities=17%  Similarity=0.147  Sum_probs=136.2

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      +.++...+..++.......+...+|.+.+++|+|+++.++..+.+.++..+++++.|++.||+++|      +.+.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~~~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR------YFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc------hhHHHHHH
Confidence            334444444444444444566778899999999999999999999999999999999999999654      57777777


Q ss_pred             HHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          409 AMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       409 ~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      +..++.++.. .++...+++..++.|++.|..++....++.|.+|+++++++.|+.+.+..+|.. ++|.+.+.+.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~~g  175 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGA-LIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccc
Confidence            7777776665 445555666677788888888888888999999999999999999999999984 88888999988776


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          488 SGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       488 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                                  |++.|++.++..++..++..+
T Consensus       176 ------------w~~~f~~~~i~~~~~~~~~~~  196 (434)
T PRK11663        176 ------------WRYGMMIAGIIAIVVGLFLCW  196 (434)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHH
Confidence                        999999887766655444333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.45  E-value=2.1e-12  Score=131.00  Aligned_cols=176  Identities=12%  Similarity=0.136  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      +.++.+.+..+............+|.+.+++|++.++.++..+...++..+++++.|++.||++||      +.+..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK------HILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH------HHHHHHHH
Confidence            456666666666666666777788999999999999999999999999999999999999999654      67777887


Q ss_pred             HHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          409 AMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       409 ~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      +.+++.++.. .++...+++..++.|++.+...+....++.|.+++++++.+.|....+..++. .++|++.+.+.+..+
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~g  155 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVAN-LLGIPLGTYLSQEFS  155 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHH-HHhccHHHHHhhhcc
Confidence            7777777665 45667788888999999998888888889999999999999999988888888 478888888888776


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          488 SGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       488 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                                  |+..|++.++..++..+......+
T Consensus       156 ------------wr~~f~~~~~~~~~~~~~~~~~lp  179 (382)
T PRK10091        156 ------------WRYTFLLIAVFNIAVLASIYFWVP  179 (382)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                        999999988776666554443333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.44  E-value=2.8e-12  Score=130.19  Aligned_cols=161  Identities=11%  Similarity=0.174  Sum_probs=133.0

Q ss_pred             hhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcc
Q 009130          345 GIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPG  423 (543)
Q Consensus       345 ~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~  423 (543)
                      ........|.+.+++|.|+++.++..+.+.++..++.++.|+++||++||      +.+..+.++..++.+... .++..
T Consensus        21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r------~~~~~~~~~~~~~~~~~~~~~~~~   94 (385)
T TIGR00710        21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR------PVLLLGLFIFALSSLGLALSNNIE   94 (385)
T ss_pred             HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh------HHHHHHHHHHHHHHHHHHHHccHH
Confidence            34455667888889999999999999999999999999999999999654      677777777777766655 45556


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHH
Q 009130          424 NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLS  503 (543)
Q Consensus       424 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~  503 (543)
                      .+++..++.|++.+...+...+++.|.+|+++++++.|+.+....++. .++|.+.+.+.+..+            |+..
T Consensus        95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~------------~~~~  161 (385)
T TIGR00710        95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAP-AVAPLLGGYILVWLS------------WHAI  161 (385)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC------------HHHH
Confidence            677778899999998888899999999999999999999999999998 488889999888776            9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 009130          504 FMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       504 f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      |++.++..++..++..+..++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (385)
T TIGR00710       162 FAFLSLAGILLSALIFFILPE  182 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            998888777776665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.43  E-value=3.9e-12  Score=129.48  Aligned_cols=174  Identities=9%  Similarity=0.129  Sum_probs=137.4

Q ss_pred             HHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHH
Q 009130          331 FWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAM  410 (543)
Q Consensus       331 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~  410 (543)
                      ++.+.+..++.....+.....+|.+.+++|.|+++.++..+.+.++..++.+..|+++||++||      +++..+.++.
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~   84 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR------KLLIGLFVLF   84 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH------HHHHHHHHHH
Confidence            4444444444322233344457888899999999999999999999999999999999999654      6777788777


Q ss_pred             HHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCC
Q 009130          411 SIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASG  489 (543)
Q Consensus       411 ~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~  489 (543)
                      .++++... .++.+.+++..++.|++.+...+...+++.|.+|+|+|+++.|+...+..+|. .++|++.+.+.+..+  
T Consensus        85 ~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~-~ig~~l~~~l~~~~g--  161 (390)
T PRK03545         85 IASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAM-VLGLPLGRVIGQYLG--  161 (390)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH-HHHhhHHHHHHHHhc--
Confidence            77776665 45666777788888998888788888899999999999999999999999998 488888998888776  


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          490 EDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       490 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                                |++.|++.+++.++..+......+
T Consensus       162 ----------w~~~f~~~~~~~~l~~~~~~~~~~  185 (390)
T PRK03545        162 ----------WRTTFLAIGGGALITLLLLIKLLP  185 (390)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                      999999988877766655444333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.43  E-value=4.9e-12  Score=126.94  Aligned_cols=158  Identities=8%  Similarity=-0.012  Sum_probs=111.5

Q ss_pred             cccchhhHHHHHHHHHHHHHcCCcc--ccccccHHHHh-hcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccc
Q 009130            6 RLSTNSKWIATVASIWIQCSVGTTY--TFSIYSSTLKS-TQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHH   81 (543)
Q Consensus         6 ~~~~~~~w~~~~~~~~~~~~~g~~~--~~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~   81 (543)
                      .+.++.+|..+.++.+.++..+..+  .....-|++++ |.+-+++..|++.....++-. ..+..|.-..|.+      
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~------   99 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTG------   99 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccC------
Confidence            3455667777766666665544322  12334466665 677778888877666666665 6777877777765      


Q ss_pred             cccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhh-hcCCCCcchh
Q 009130           82 QTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVM-NFGHYSGTIV  160 (543)
Q Consensus        82 ~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~-~fp~~rg~~~  160 (543)
                        +      .|+.++.|.+++.+|.++- ++.....++  .-+.+++.|++.|+|.|.... .-.++++ -.+++|-+++
T Consensus       100 --~------~k~Pli~s~ii~~~g~llY-~~l~~~~~~--~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~rA~  167 (488)
T KOG2325|consen  100 --S------VKKPLIVSFLIAIIGNLLY-LALAYVPNG--VKYLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPRAF  167 (488)
T ss_pred             --C------cccCHHHHHHHHHHHHHHH-HHHHhcccc--hHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHHHH
Confidence              1      3888999999999999983 232344443  378889999999999887644 5556665 4468999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHh
Q 009130          161 GILKGFVGLSGAVLTQVYKTV  181 (543)
Q Consensus       161 gi~~~~~~lg~~i~~~l~~~l  181 (543)
                      +....+..+|.++||.+...+
T Consensus       168 a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  168 AATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHhhhHHHHHHHHhHHHHHHH
Confidence            999999999999998776554

>PRK10504 putative transporter; Provisional

Probab=99.43  E-value=2.8e-12  Score=134.09  Aligned_cols=176  Identities=14%  Similarity=0.192  Sum_probs=144.7

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      +.+|.+++..++.......+..++|.+.+++|.++.+.++..+.+.++..++.++.|+++||++||      +.+..+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r------~~~~~~~~   83 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR------NIFFTAIV   83 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH------HHHHHHHH
Confidence            457777777777766666778889999999999999999999999999999999999999999654      55666666


Q ss_pred             HHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          409 AMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       409 ~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      +..++.+... .++...+++..++.|++.+...+....++.|.+|++++++++|+......+|. .++|.+.|.+.|..+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~g~l~~~~g  162 (471)
T PRK10504         84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGP-LLGPALGGLLVEYAS  162 (471)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhhcc
Confidence            6666655544 44556677788899999999888888999999999999999999999988998 589999999998876


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          488 SGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       488 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                                  |++.|++...+..++.++.....+
T Consensus       163 ------------w~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        163 ------------WHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence                        999999988777777666555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.42  E-value=4.4e-12  Score=129.91  Aligned_cols=182  Identities=14%  Similarity=0.108  Sum_probs=137.9

Q ss_pred             HHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHH
Q 009130          331 FWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAM  410 (543)
Q Consensus       331 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~  410 (543)
                      +...++.+++............|.+.+++|.+.++.++..+.+.++..++.+..|+++||+|||      +.+..+.++.
T Consensus        10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r------~~~~~~~~~~   83 (412)
T TIGR02332        10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR------RWIAGIMVLW   83 (412)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH------HHHHHHHHHH
Confidence            3344444444444444455556777788999999999999999999999999999999999654      6777777777


Q ss_pred             HHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCC
Q 009130          411 SIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASG  489 (543)
Q Consensus       411 ~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~  489 (543)
                      .++.++.. .++...+++..++.|++.+...+....++.|.+|+++|+++.|+.+....+|. ++++.+.+++.+..+- 
T Consensus        84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~-  161 (412)
T TIGR02332        84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTM-ALGLILSGYILALDGL-  161 (412)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCC-
Confidence            77776665 46667788889999999999888888889999999999999999999999988 4788888887643100 


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009130          490 EDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRT  525 (543)
Q Consensus       490 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  525 (543)
                           ....+||+.|++.++..++..++..+..+++
T Consensus       162 -----~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~  192 (412)
T TIGR02332       162 -----MALKGWQWLFLLEGFPSVILGVMTWFWLDDS  192 (412)
T ss_pred             -----CCccchhHHHHHHHHHHHHHHHHHhhccCCC
Confidence                 0012499999998877766655555444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10054 putative transporter; Provisional

Probab=99.42  E-value=3.6e-12  Score=129.76  Aligned_cols=174  Identities=14%  Similarity=0.088  Sum_probs=132.8

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL  407 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~  407 (543)
                      ++++.+.+..++..........++|.+++ ++|+|+.+.++..+...+...+++++.|+++||+++|      +.+.++.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k------~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK------RYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc------hhHHHHH
Confidence            44677777777776666667777887775 5799999999999999999999999999999999654      5666676


Q ss_pred             HHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 009130          408 VAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV  486 (543)
Q Consensus       408 ~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~  486 (543)
                      +...++.+.+. .++.+.+++...+.|.+.+...+....+..|.+|+++++++.|+......+|. .++|.+.+.+.+ .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~-~igp~l~~~l~~-~  158 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGW-TVGPPLGTLLVM-Q  158 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-h
Confidence            66666666555 34444444445566666666667778888999999999999999999889988 488988888875 4


Q ss_pred             cCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          487 ASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       487 g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      +            |+..|++.+++.+++.++..+..
T Consensus       159 g------------~~~~f~~~~~~~~i~~i~~~~~~  182 (395)
T PRK10054        159 S------------INLPFWLAAICSAFPLVFIQIWV  182 (395)
T ss_pred             c------------cCcHHHHHHHHHHHHHHHHHHHH
Confidence            4            88999988877777655544433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.42  E-value=5.1e-12  Score=128.63  Aligned_cols=154  Identities=10%  Similarity=0.172  Sum_probs=129.9

Q ss_pred             hhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc
Q 009130          344 SGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP  422 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~  422 (543)
                      ..+.....+|.+.+++|.++++.++..+...++..+++++.|+++||++||      +.+..+.++.+++.+... .++.
T Consensus        35 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~  108 (394)
T PRK10213         35 VEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR------YVVILFAVLLTLSCLLVSFANSF  108 (394)
T ss_pred             HHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH------HHHHHHHHHHHHHHHHHHHHChH
Confidence            334445567888899999999999999999999999999999999999654      677788888777766655 4566


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHH
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFML  502 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~  502 (543)
                      +.+++..++.|++.+...+....++.|.+|+|+++.+.++...+..++. .++|.+.+.+.+..+            |+.
T Consensus       109 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~-~ig~~l~~~l~~~~g------------w~~  175 (394)
T PRK10213        109 SLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL-VIAAPLGSFLGELIG------------WRN  175 (394)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcC------------HHH
Confidence            7788888999999999889999999999999999999999999999988 589999999998876            999


Q ss_pred             HHHHHHHHHHHHHH
Q 009130          503 SFMIMAFVAFFGSL  516 (543)
Q Consensus       503 ~f~~~~~~~~~~~i  516 (543)
                      .|++.+.+.++..+
T Consensus       176 ~f~~~~~l~~~~~l  189 (394)
T PRK10213        176 VFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988766555443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.42  E-value=9.5e-13  Score=127.44  Aligned_cols=177  Identities=17%  Similarity=0.098  Sum_probs=144.4

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      +-|..+++.+......--.+....|.+.++.++|.+|.+.+.+.+.++..++.++.|.++||.+.      +..+..+++
T Consensus        29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~np------r~fm~~gLi  102 (448)
T COG2271          29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNP------RYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC------ceeehHHHH
Confidence            34455555554444444456667788888899999999999999999999999999999999954      468888999


Q ss_pred             HHHHHHHHHhh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhh--hhhhhh
Q 009130          409 AMSIGHIAIAS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRII--GRIYDR  485 (543)
Q Consensus       409 ~~~i~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~--g~l~~~  485 (543)
                      +.++..+++.+ ++...+.+...+.|+..|..++...-.+..-|++++||+..++.+++.++|+. +.|++.  +++.++
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGa-l~~~~~~la~~~~~  181 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGA-LAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccc-hHHHHHHHHHHHhc
Confidence            99999988884 34455666777889999999999999999999999999999999999999996 555667  777776


Q ss_pred             ccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          486 VASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       486 ~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .+            |+.+|++-+++.++..++.+++.+.
T Consensus       182 ~~------------w~~~f~~pgiiaiival~~~~~~rd  208 (448)
T COG2271         182 GG------------WRAAFYFPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             cc------------hhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            65            9999999998888777776666554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.41  E-value=1.5e-12  Score=130.27  Aligned_cols=165  Identities=19%  Similarity=0.231  Sum_probs=134.3

Q ss_pred             HHhhhchhhhhhhchH-HHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHH
Q 009130          338 TLCGMGSGIATMNNIA-QVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIA  416 (543)
Q Consensus       338 ~~~~~~~~~~~~~~~~-~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~  416 (543)
                      .++...........+| .+.+++|.|+.+.++..+...++..++.++.|+++||+|||      +.+..+.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR------RVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe------eeEeehhhhhhhHHHH
Confidence            3333344444555667 56678899999999999999999999999999999999654      6788888888777444


Q ss_pred             Hhh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcccc
Q 009130          417 IAS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCY  495 (543)
Q Consensus       417 ~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~  495 (543)
                      ... .+.+.+++..++.|++.+...+....++.|.+|+|+|+++.|+......+|. +++|.+.+.+.+..+        
T Consensus        79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~~--------  149 (352)
T PF07690_consen   79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGS-ILGPLLGGFLISYFG--------  149 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHH-HHHHHHHHHCCCHCH--------
T ss_pred             hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhh-hcccchhhhhhhccc--------
Confidence            433 5555778888899999999999999999999999999999999999999998 588999999987776        


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          496 GTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       496 ~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                          |+..|++.+++.++..++...+
T Consensus       150 ----~~~~~~~~~~~~~~~~il~~~~  171 (352)
T PF07690_consen  150 ----WRWAFLISAILSLIAAILFILF  171 (352)
T ss_dssp             ----HCCHHHHHHHHHHHHHHHHHCC
T ss_pred             ----cccccccccchhhhhhhhHhhh
Confidence                9999999999888887754333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.40  E-value=7.6e-12  Score=134.61  Aligned_cols=185  Identities=12%  Similarity=0.077  Sum_probs=132.1

Q ss_pred             cchhHHHHHHHHHhhhchh----hhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          327 CTGNFWFLCIATLCGMGSG----IATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       327 ~~~~f~~~~l~~~~~~~~~----~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      ..+..|.+.+..++.....    ..+...+|.+..+.|.+..+.+++.+.+.++.++|.+++|+++||+|||      +.
T Consensus       161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR------~~  234 (742)
T TIGR01299       161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK------QC  234 (742)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HH
Confidence            3455565554443332221    1234446777778899999999999999999999999999999999654      66


Q ss_pred             HHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGR  481 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~  481 (543)
                      +.++.++..++.++.. .++...+++..++.|++.++..+..++++.|.+|+++|+...+++.+...+|.. +++.+...
T Consensus       235 lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~i-la~~la~~  313 (742)
T TIGR01299       235 LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI-YAAAMAWA  313 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            6667766666665554 456667788899999999999999999999999999999999999988888884 66666655


Q ss_pred             hhhhccCCC-CccccccchhHHHHHHHHHHHHHHHHHH
Q 009130          482 IYDRVASGE-DHTCYGTHCFMLSFMIMAFVAFFGSLVA  518 (543)
Q Consensus       482 l~~~~g~~~-~~~~~~~~~~~~~f~~~~~~~~~~~i~~  518 (543)
                      +....|... .+..+...+|+..+++.++..++..++.
T Consensus       314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~  351 (742)
T TIGR01299       314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL  351 (742)
T ss_pred             HHHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            554332100 0111233469998888776665554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.39  E-value=3.3e-12  Score=128.42  Aligned_cols=169  Identities=11%  Similarity=-0.036  Sum_probs=132.5

Q ss_pred             HHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130          334 LCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG  413 (543)
Q Consensus       334 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~  413 (543)
                      +....++...........+|.+..+.+.++.+.++..+...++..++.++.|+++||++||      +.+..+.++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK------KVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh------HHHHHHHHHHHHH
Confidence            3444444444444455667888888999999999999999999999999999999999654      5666666655554


Q ss_pred             HHHHh-hc-----CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          414 HIAIA-SG-----FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       414 ~~~~~-~~-----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      ..+.. ..     +.+.+++..++.|++.+...+...+++.|.+|+++|+++.|.......+|. +++|.+.+.+.+..+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~l~~~l~~~~g  156 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFY-IVGPGIGGLMYATLG  156 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence            44333 22     556677788888999998888899999999999999999999999999998 589989999988876


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          488 SGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       488 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                                  |+..|++.++..+++.++...+
T Consensus       157 ------------~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       157 ------------IKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHhc
Confidence                        9999988877666665544443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.38  E-value=4e-12  Score=132.27  Aligned_cols=172  Identities=17%  Similarity=0.183  Sum_probs=140.2

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHh---hCCCchhhHHHHHHHHHHHhhhccccccchhh-hhhhcCCCchHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGES---LHYSTTEINSLISLWSIWNFFGRFGAGYGSDV-FLHKLGWARPIFMV  404 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~-~~~~~~~~r~~~~~  404 (543)
                      +.+|.+.+..++....++....++|.|+++   +|++..+++...+.+.++..++++++|+++|| +|||      +++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~------~~l~   83 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK------KTMV   83 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH------HHHH
Confidence            345666666666667777888889999865   79999999999999999999999999999999 7554      6888


Q ss_pred             HHHHHHHHHHHHHhh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcc---hhhHHHHHHhhhhhhhhhhhhhhhh
Q 009130          405 ITLVAMSIGHIAIAS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRH---MGTIFNTISIACPVGSYICSVRIIG  480 (543)
Q Consensus       405 ~~~~~~~i~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~ig~~i~~~~l~g  480 (543)
                      ++.++.+++.+++.. .+...+++...+.|++.|...+...++++|.+|+++   ++.++++.+.+.++|. +++|.+.+
T Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~-~ig~~l~g  162 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGS-FISPLLAG  162 (475)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHH-HHHHHHHH
Confidence            888888888777764 344556667778899998888889999999998764   8889999999999998 48999999


Q ss_pred             hhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHH
Q 009130          481 RIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAF  519 (543)
Q Consensus       481 ~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~  519 (543)
                      ++.+..+            |+..|++.++.++++.+..+
T Consensus       163 ~l~~~~g------------~~~~f~~~~~~~~~~~l~~~  189 (475)
T TIGR00924       163 VIAENYG------------YHVGFNLAAVGMVIGLLTFF  189 (475)
T ss_pred             HHHHhcC------------hHHHHHHHHHHHHHHHHHHH
Confidence            9998776            99999988866666554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.37  E-value=2.5e-12  Score=130.69  Aligned_cols=158  Identities=16%  Similarity=0.187  Sum_probs=130.2

Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNL  425 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~  425 (543)
                      .+....|.+.+++|.++.+.++..+...++..++.++.|+++||+|||      +.+..+.++..++..+.. .++...+
T Consensus        12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (399)
T TIGR00893        12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGAR------KTLAVFIVIWGVFTGLQAFAGAYVSL   85 (399)
T ss_pred             hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcc------eeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence            344556777788999999999999999999999999999999999755      456666666666666555 4566677


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      ++..++.|++.+...+....++.|.+|+|+|+++.|+......+|. +++|.+.+.+.+..+            |+..|+
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~------------~~~~~~  152 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG-IIGGPLVGWILIHFS------------WQWAFI  152 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHhCC------------chHHHH
Confidence            8888999999999999999999999999999999999999999998 488888998888776            999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 009130          506 IMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~~~~  523 (543)
                      +.++..++..++.++..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893       153 IEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HHHHHHHHHHHHhhheec
Confidence            888777776665554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.37  E-value=9.1e-12  Score=128.79  Aligned_cols=179  Identities=16%  Similarity=0.082  Sum_probs=127.6

Q ss_pred             cchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH
Q 009130          327 CTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT  406 (543)
Q Consensus       327 ~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~  406 (543)
                      +++.++...+...........+....|.+. +.|+|+++.++..+.+.++..++.++.|+++||+++|      +.+..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~------~~~~~~   97 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPR------VFLPAG   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCc------eehHHH
Confidence            344455554444443333333444455544 5699999999999999999999999999999999754      456666


Q ss_pred             HHHHHHHHHHHhh-----cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhh
Q 009130          407 LVAMSIGHIAIAS-----GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGR  481 (543)
Q Consensus       407 ~~~~~i~~~~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~  481 (543)
                      .++.+++.++...     .+...+++..++.|++.+..++.....+.|.+|+++|+++.|+.+.+..+++. ++|.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~l~~~  176 (438)
T TIGR00712        98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGG-IPPLLVLL  176 (438)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhH-HHHHHHHH
Confidence            6666666555432     12233455667788888887777888889999999999999999999888885 66666665


Q ss_pred             hhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          482 IYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       482 l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      ..+...           +|+..|++.++++++..++.+++.++
T Consensus       177 ~~~~~~-----------~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       177 GMAWFN-----------DWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             HHHHhh-----------hhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            554332           29999999888887766665555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.37  E-value=8.1e-12  Score=131.11  Aligned_cols=174  Identities=10%  Similarity=0.019  Sum_probs=140.5

Q ss_pred             HHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHH
Q 009130          332 WFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMS  411 (543)
Q Consensus       332 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~  411 (543)
                      ..+++..++...-.......+|.+.+++|.+.++.++..+.+.++..++.+..|+++||+|||      +.+..+.++..
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk------~~l~~~~~~~~   82 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK------RLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHH
Confidence            344444555544455566678999999999999999999999999999999999999999654      78888888888


Q ss_pred             HHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhc-CCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCC
Q 009130          412 IGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIF-GVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASG  489 (543)
Q Consensus       412 i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~  489 (543)
                      ++.++.. .++.+.+++..++.|++.+...+.....+.+.+ |+++|+++.|+......+|. .++|.+.|.+.+..+  
T Consensus        83 ~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~-~~gp~lgg~l~~~~g--  159 (495)
T PRK14995         83 LASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGA-AFGPLVGGILLEHFY--  159 (495)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCC--
Confidence            8877766 466677888889999998887777777776766 67899999999999999998 589999999999876  


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          490 EDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       490 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                                |++.|++...+.++..++..+..++
T Consensus       160 ----------wr~~f~i~~~~~~~~~~l~~~~l~~  184 (495)
T PRK14995        160 ----------WGSVFLINVPIVLVVMGLTARYVPR  184 (495)
T ss_pred             ----------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                      9999999887777776665555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.37  E-value=3.2e-11  Score=125.83  Aligned_cols=168  Identities=10%  Similarity=0.123  Sum_probs=117.3

Q ss_pred             hhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc
Q 009130          344 SGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP  422 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~  422 (543)
                      ..+......|.+.+++|++.++.++..+.+.++..++.++.|+++||+|+|      +++..+.+...++.++.. ..+.
T Consensus        51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r------~~~~~~~~~~~~~~~~~~~~~s~  124 (476)
T PLN00028         51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR------YGSAFLLMLTAPAVFCMSLVSSA  124 (476)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHhcCH
Confidence            334455566778888999999999999999999999999999999999654      566666666666666555 3455


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHH
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFML  502 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~  502 (543)
                      ..+++..++.|++.+... ....++.|.+|+++|+.+.|+.+....+|.. +++.+.+.+.+......   +.+..+||+
T Consensus       125 ~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~-~~~~~~~~i~~~~~~~~---~~~~~gWr~  199 (476)
T PLN00028        125 TGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGG-VTQLLMPLVFPLIKDAG---APSFTAWRI  199 (476)
T ss_pred             HHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC---CcchhhhHH
Confidence            566667778888877543 3455788999999999999998766666653 44444444332110000   001125999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 009130          503 SFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       503 ~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .|++.+++.++..++.+++.
T Consensus       200 ~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        200 AFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHc
Confidence            99999888777666655543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.37  E-value=5.1e-12  Score=132.60  Aligned_cols=172  Identities=16%  Similarity=0.193  Sum_probs=139.8

Q ss_pred             HHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130          334 LCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG  413 (543)
Q Consensus       334 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~  413 (543)
                      +.+..++............|.+.+++|.++.+.++..+.+.++..++.++.|+++||+|||      +.+..+.++..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~   80 (485)
T TIGR00711         7 LMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR------RLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH------HHHHHHHHHHHHH
Confidence            3334444434444456667888899999999999999999999999999999999999654      6777788887777


Q ss_pred             HHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCc
Q 009130          414 HIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDH  492 (543)
Q Consensus       414 ~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~  492 (543)
                      .++.. .++...+++..++.|++.+...+...+++.|.+|+++|+++.|+......+|. .++|.+.+++.+..+     
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~~-----  154 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAP-ALGPTLGGWIIENYH-----  154 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHh-hhhhccHhHhccCcC-----
Confidence            77666 45666778888899999998888899999999999999999999999999998 488999999988776     


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          493 TCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       493 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                             |++.|++.+.+.++..++..+..++
T Consensus       155 -------w~~~f~~~~~~~~~~~~~~~~~~~~  179 (485)
T TIGR00711       155 -------WRWIFLINVPIGIIVVVVAFFILPR  179 (485)
T ss_pred             -------ceehhhhhhHHHHHHHHHHHHHcCC
Confidence                   9999998887777766665555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.36  E-value=1.5e-11  Score=125.23  Aligned_cols=164  Identities=12%  Similarity=0.103  Sum_probs=131.6

Q ss_pred             chhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcC
Q 009130          343 GSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGF  421 (543)
Q Consensus       343 ~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~  421 (543)
                      .........+|.+.+++|.|+.+.++..+.+.++..++.++.|+++||++||      +.+..+.+...++..... .++
T Consensus        17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r------~~l~~~~~~~~i~~~~~~~~~~   90 (392)
T PRK10473         17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK------PVAIPGAALFIIASLLCSLAET   90 (392)
T ss_pred             HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh------HHHHHHHHHHHHHHHHHHHhCc
Confidence            3334455678888899999999999999999999999999999999999654      677777777777766655 345


Q ss_pred             cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhH
Q 009130          422 PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFM  501 (543)
Q Consensus       422 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~  501 (543)
                      ...+++..++.|++.+...+...+++.|.+++++|+++.|..+....++. +++|.+.+.+.+..+            |+
T Consensus        91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~-~~~~~i~~~l~~~~g------------~~  157 (392)
T PRK10473         91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIP-VLAPVLGHLIMLKFP------------WQ  157 (392)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcC------------hH
Confidence            55667777888998888888888999999999999999999988888887 478888888777665            99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Q 009130          502 LSFMIMAFVAFFGSLVAFLLFLRT  525 (543)
Q Consensus       502 ~~f~~~~~~~~~~~i~~~~~~~~~  525 (543)
                      ..|++.+++.++..++.+...+++
T Consensus       158 ~~~~~~~~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        158 SLFYTMAAMGILVLLLSLFILKET  181 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999998887777776655554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.35  E-value=2.1e-11  Score=124.86  Aligned_cols=159  Identities=15%  Similarity=0.123  Sum_probs=125.6

Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNL  425 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~  425 (543)
                      ......|.+.+++|.++++.++..+...++..++.++.|+++||+|||      +.+..+.++..++.++.. ..+...+
T Consensus        33 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (406)
T PRK11551         33 SAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK------RILIVSVALFGLFSLATAQAWDFPSL  106 (406)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            344456778888999999999999999999999999999999999654      566666666666555444 4566667


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      .+..++.|++.+...+...+++.|.+|+++++++.|+.+....+|.. +++.+.+.+.+..+            |+..|+
T Consensus       107 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~------------~~~~~~  173 (406)
T PRK11551        107 LVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGA-LASVIGVLAAGDAA------------WRHIFY  173 (406)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccccC------------HHHHHH
Confidence            77888999999988888899999999999999999999998888884 77777777766655            999998


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 009130          506 IMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~~~~~  524 (543)
                      +.+++.++..++.....++
T Consensus       174 ~~~~~~~~~~~~~~~~l~~  192 (406)
T PRK11551        174 VGGVGPLLLVPLLMRWLPE  192 (406)
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            8776666555544443333

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.35  E-value=2.7e-11  Score=123.82  Aligned_cols=167  Identities=17%  Similarity=0.214  Sum_probs=129.9

Q ss_pred             HHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHH
Q 009130          331 FWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAM  410 (543)
Q Consensus       331 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~  410 (543)
                      +...++..+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||      +.+..+.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r------~~~~~~~~~~   87 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR------LPMVTSIVLF   87 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHH
Confidence            3344444444444444455666778888999999999999999999999999999999999654      5666777777


Q ss_pred             HHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCC
Q 009130          411 SIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASG  489 (543)
Q Consensus       411 ~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~  489 (543)
                      .++.++.. .++...+++..++.|++.+...+...+++.|.+|+++++.+.|+...+..+|. ++++.+.+.+.+..+. 
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~l~~~~~~-  165 (405)
T TIGR00891        88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGA-VVAAQVYSLVVPVWGD-  165 (405)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCc-
Confidence            76666555 45666677788899999999888889999999999999999999999999998 4788888887776431 


Q ss_pred             CCccccccchhHHHHHHHHHHHHHH
Q 009130          490 EDHTCYGTHCFMLSFMIMAFVAFFG  514 (543)
Q Consensus       490 ~~~~~~~~~~~~~~f~~~~~~~~~~  514 (543)
                               +|+..|++.++..++.
T Consensus       166 ---------~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       166 ---------GWRALFFISILPIIFA  181 (405)
T ss_pred             ---------cHHHHHHHHHHHHHHH
Confidence                     3898888765544444

>TIGR00895 2A0115 benzoate transport

Probab=99.35  E-value=7.2e-12  Score=127.60  Aligned_cols=159  Identities=15%  Similarity=0.142  Sum_probs=128.0

Q ss_pred             hhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcch
Q 009130          346 IATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGN  424 (543)
Q Consensus       346 ~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~  424 (543)
                      .......|.+.+++|.++.+.+++.+...++..++.++.|+++||++||      +.+..+.++..++.++.. .++...
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~  107 (398)
T TIGR00895        34 AAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK------RVLLWSILLFSVFTLLCALATNVTQ  107 (398)
T ss_pred             HHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHccchHH
Confidence            3445567778888999999999999999999999999999999999654      667777777666666555 445556


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHH
Q 009130          425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSF  504 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f  504 (543)
                      +++..++.|++.+...+...+++.|.+|+++++++.|+......+|. .++|.+.+.+.+..+            |+..|
T Consensus       108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~g------------~~~~~  174 (398)
T TIGR00895       108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGA-AVGGFLAGWLIPVFG------------WRSLF  174 (398)
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHH-HHHHHHHHHHhhccc------------ceeeh
Confidence            77778889999998889999999999999999999999999999998 488888889888776            88888


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 009130          505 MIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       505 ~~~~~~~~~~~i~~~~~~~  523 (543)
                      ++.+++..+..++.....+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~  193 (398)
T TIGR00895       175 YVGGIAPLLLLLLLMRFLP  193 (398)
T ss_pred             hhhhhHHHHHHHHHHHhCC
Confidence            8876555555554444433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.34  E-value=2.1e-11  Score=124.93  Aligned_cols=162  Identities=13%  Similarity=0.081  Sum_probs=130.0

Q ss_pred             hhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc
Q 009130          344 SGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP  422 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~  422 (543)
                      ........+|.+.+++|.+.++.++..+++.++..++.+++|+++||+|||      +++..+.++..++.++.. .++.
T Consensus        31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr------~~l~~~~~~~~~~~~~~~~a~~~  104 (413)
T PRK15403         31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR------PVLITGALIFTLACAATLFTTSM  104 (413)
T ss_pred             HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch------HHHHHHHHHHHHHHHHHHHcCCH
Confidence            334456667788888999999999999999999999999999999999654      677777777777766655 4566


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHH
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFML  502 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~  502 (543)
                      ..+++..++.|++.+...+....++.|.+++++++++.++......++. .++|.+.+.+.+..+            |++
T Consensus       105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~lg~~l~~~~g------------w~~  171 (413)
T PRK15403        105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAP-IIGPLSGAALMHFVH------------WKV  171 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC------------HHH
Confidence            6778888899998776556666788899999999999999999999998 488888888887766            999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q 009130          503 SFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       503 ~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .|++.++..+++.+..++..++
T Consensus       172 ~f~~~~~~~~i~~~~~~~~lp~  193 (413)
T PRK15403        172 LFAIIAVMGLIAFVGLLLAMPE  193 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC
Confidence            9999888777776654443344

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.33  E-value=1.8e-11  Score=128.20  Aligned_cols=179  Identities=15%  Similarity=0.150  Sum_probs=135.8

Q ss_pred             HHhhcch-hHHHHHHHHHhhhchhhhhhhchHHHH-HhhCCCchhhHHHHHHHHHHHhhhccccccchhh-hhhhcCCCc
Q 009130          323 LQAMCTG-NFWFLCIATLCGMGSGIATMNNIAQVG-ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDV-FLHKLGWAR  399 (543)
Q Consensus       323 ~~~~~~~-~f~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~-~~~~~~~~r  399 (543)
                      .+.+++| .+|..+...++....++.+..+++.++ +++|++.++++...+.+........+++|+++|| +|||     
T Consensus        14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r-----   88 (500)
T PRK09584         14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK-----   88 (500)
T ss_pred             hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----
Confidence            3445666 488877777777777778888888887 5689999998888877776666666789999999 5654     


Q ss_pred             hHHHHHHHHHHHHHHHHHhh-c-CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcc--hhhHHHHHHhhhhhhhhhhh
Q 009130          400 PIFMVITLVAMSIGHIAIAS-G-FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRH--MGTIFNTISIACPVGSYICS  475 (543)
Q Consensus       400 ~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~ig~~i~~  475 (543)
                       +.+..+.++..++..++.. . +...+++..++.|++.|...+...+++.|.+|+++  +..++++.+.+.++|+ .++
T Consensus        89 -~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~-~~g  166 (500)
T PRK09584         89 -RVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGS-FFS  166 (500)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHH-HHH
Confidence             6777788887777666653 2 23345556678888888888888889999998654  4567888889999998 489


Q ss_pred             hhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          476 VRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       476 ~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                      |.+.|++.|..|            |++.|++.++..+++.+..++
T Consensus       167 p~i~g~l~~~~g------------~~~~F~i~~i~~~i~~i~~~~  199 (500)
T PRK09584        167 MLATPWLAAKYG------------WSVAFALSVVGMLITVVNFAF  199 (500)
T ss_pred             HHHHHHHHHhhC------------HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999877            999999887766666544333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.33  E-value=5.1e-11  Score=121.51  Aligned_cols=174  Identities=10%  Similarity=0.131  Sum_probs=132.6

Q ss_pred             HHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHH
Q 009130          332 WFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMS  411 (543)
Q Consensus       332 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~  411 (543)
                      +......++...........+|.+.+++|.|+.+.++..+...++..++.++.|+++||++||      +.+..+.+...
T Consensus        11 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr------~~~~~~~~~~~   84 (394)
T PRK11652         11 FMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR------PVILVGMSIFI   84 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh------HHHHHHHHHHH
Confidence            333344444444444455667888899999999999999999999999999999999999654      56666776666


Q ss_pred             HHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC
Q 009130          412 IGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE  490 (543)
Q Consensus       412 i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~  490 (543)
                      ++.+... .++...+++..++.|++.+...+....+..|.+++++++.+.+..+++..++. .++|.+.+.+.+..+   
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~~g---  160 (394)
T PRK11652         85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSP-LLAPLIGGLLTTLFG---  160 (394)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccC---
Confidence            6665544 44556677778888988887777777788899998999999999998888888 588888998888766   


Q ss_pred             CccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          491 DHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       491 ~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                               |+..|++.++..++..++..+..+|
T Consensus       161 ---------~~~~f~~~~~~~~~~~~~~~~~~~~  185 (394)
T PRK11652        161 ---------WRACYLFLLLLGAGVTFSMARWMPE  185 (394)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence                     9999998877666555444444343

>PRK03699 putative transporter; Provisional

Probab=99.33  E-value=2.1e-11  Score=124.34  Aligned_cols=173  Identities=9%  Similarity=0.103  Sum_probs=132.7

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      +.+|..++.+++.......+-..+|.+.+++|+|.++.++..+...++..++.++.|++.||++||      +.+..+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r------~~~~~~~~   80 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK------RQLIFGFA   80 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHH
Confidence            345555555555544445566667888899999999999999999999999999999999999665      56777777


Q ss_pred             HHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          409 AMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       409 ~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      +..++.++.. .++...+++..++.|++.+...+....++.|.+|+++|+.+.+..+....+++. ++|.+.+.+.+...
T Consensus        81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~  159 (394)
T PRK03699         81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGM-IFPIIAAYLLARSI  159 (394)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence            7777666555 345556677788889988888888888999999999999999988877778774 67777777765432


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHHHH
Q 009130          488 SGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAF  519 (543)
Q Consensus       488 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~  519 (543)
                                 +|+..|.+.++..++..++.+
T Consensus       160 -----------gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        160 -----------EWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHH
Confidence                       399999988776666554433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.33  E-value=2e-11  Score=123.72  Aligned_cols=159  Identities=11%  Similarity=0.203  Sum_probs=131.8

Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNL  425 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~  425 (543)
                      .+...+|.+.+++|.|+++.++..+...++..+++++.|+++||++|      ++.+..+.++..++..++. .++...+
T Consensus         9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~------~~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGR------KPVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCC------hHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            34567888899999999999999999999999999999999999964      4677777777777766655 4555667


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      ++..++.|++.+...+...+++.|.+++++++++.|+......+|. .++|.+.+.+.+..+            |+..|+
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~------------~~~~~~  149 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP-LLAPIIGGWLLVWFS------------WHAIFW  149 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC------------hHHHHH
Confidence            7778888999888888888999999999999999999999888888 488889999988776            999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 009130          506 IMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~~~~~  524 (543)
                      +.+...++..++..+..++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~  168 (377)
T PRK11102        150 VLALAAILAAALVFFFIPE  168 (377)
T ss_pred             HHHHHHHHHHHHHHHhCCc
Confidence            8888777776665544443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.32  E-value=4.7e-11  Score=122.30  Aligned_cols=175  Identities=15%  Similarity=0.080  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchh-----hHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHH
Q 009130          330 NFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTE-----INSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMV  404 (543)
Q Consensus       330 ~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~  404 (543)
                      .+...++..++...........+|.+.+++|.+..+     .+...++..+...++.++.|+++||++||      +.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~   88 (408)
T PRK09874         15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK------IMLL   88 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH------HHHH
Confidence            344444555554444445666788899999988655     37788899999999999999999999654      5666


Q ss_pred             HHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhh
Q 009130          405 ITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIY  483 (543)
Q Consensus       405 ~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~  483 (543)
                      .+.+...++..++. .++.+.+++..++.|++.+ ..+.....+.+.+++++++.+.|+......+|. +++|.+.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~  166 (408)
T PRK09874         89 RSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGA-LLGPLAGGLLA  166 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            67766666665554 3455667777778888654 456666788899999999999999998888888 58888999998


Q ss_pred             hhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          484 DRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       484 ~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      +..+            |+..|++.+++.++..+...+..++
T Consensus       167 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  195 (408)
T PRK09874        167 DSYG------------LRPVFFITASVLFLCFLVTLFCIRE  195 (408)
T ss_pred             HHhC------------HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8776            9999999888777776665554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.32  E-value=2.4e-11  Score=122.09  Aligned_cols=158  Identities=13%  Similarity=0.053  Sum_probs=122.9

Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcchH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPGNL  425 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~  425 (543)
                      .+...+|.+.+|+|.|+++.+++.+.+.++..++++..|+++||+|||      +++.........+...... ++...+
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr------~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKR------WFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch------HHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            455677888899999999999999999999999999999999999754      4444444333333322232 466678


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      ++..++.|++.+.. ......++|.+|+|+|+++.++...+..+|.. +++.+.+.+.+..|            ||..|+
T Consensus        83 ~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~-l~~~~~~~l~~~~g------------Wr~~f~  148 (368)
T TIGR00903        83 LACQLLAALGQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGII-FALAAGLKIYTAGG------------LQLLII  148 (368)
T ss_pred             HHHHHHHHhHhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccc------------hHHHHH
Confidence            88899999998864 44445568999999999999999999999984 78888888887766            999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 009130          506 IMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~~~~~  524 (543)
                      +.+++.++..++..+..++
T Consensus       149 ~~~~l~~~~~~~~~~~lp~  167 (368)
T TIGR00903       149 PIAAVAAAGIILVLAALPA  167 (368)
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence            9888777776665555544

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.31  E-value=3.6e-11  Score=123.52  Aligned_cols=173  Identities=16%  Similarity=0.231  Sum_probs=133.1

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhh-hhhcCCCchHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVF-LHKLGWARPIFMVIT  406 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~-~~~~~~~r~~~~~~~  406 (543)
                      +.++..+.........++.+..++|.++++ +|+++.+++...+.+.....++.+++|+++||+ |||      +.+.++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr------r~iliG   82 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR------MAVMLG   82 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH------HHHHHH
Confidence            445666666555566677788888888765 699999999999999999999999999999999 765      567778


Q ss_pred             HHHHHHHHHHHhhc--CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCc--chhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          407 LVAMSIGHIAIASG--FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVR--HMGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       407 ~~~~~i~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      .++..++.+++...  +....++...+..++.|...+..+++++|.+|++  +|.+++++.....++|+ .++|.+.|++
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~-~iap~l~g~L  161 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGS-IIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHH-HHHHHHHHHH
Confidence            88888777665532  2233444444555667776677788999999976  68999999988888998 5899999999


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       483 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                      .+..|            |+..|.+.++.++++.+..+.
T Consensus       162 ~~~~G------------w~~~F~iaaigm~l~li~~~~  187 (493)
T PRK15462        162 QEEYS------------WAMGFGLAAVGMIAGLVIFLC  187 (493)
T ss_pred             HhhhC------------hHHHHHHHHHHHHHHHHHHHH
Confidence            88776            999999877766666555433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.31  E-value=7.6e-11  Score=119.83  Aligned_cols=190  Identities=12%  Similarity=0.111  Sum_probs=128.5

Q ss_pred             chhHHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH
Q 009130          328 TGNFWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT  406 (543)
Q Consensus       328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~  406 (543)
                      +|.++...+.++.....-+.+....+.+.+ ++|+|++|.+++.++..+...++++..|++.||+|.|      +++.++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R------~v~~~~  106 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR------RWTVFS  106 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHH
Confidence            356776666665554444444444555555 6899999999999999999999999999999999754      456666


Q ss_pred             HHHHHHHHHHHhh------cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhh---hhhhh
Q 009130          407 LVAMSIGHIAIAS------GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSY---ICSVR  477 (543)
Q Consensus       407 ~~~~~i~~~~~~~------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~---i~~~~  477 (543)
                      .++..+..+....      ++...+++..++.|++ +..++.....+++.||++++|++.|+....+.+|..   ++.|.
T Consensus       107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            6666666555442      3555677888899997 777888888999999999999999999544444442   23333


Q ss_pred             hhh-hhhhhccCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          478 IIG-RIYDRVASGEDHTCYG-THCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       478 l~g-~l~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      +.+ .+.+..|........| ..+++.+.++...+.++..++.++..++
T Consensus       186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            332 2334333211111111 3358888888888777777776665443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.31  E-value=4.6e-12  Score=128.07  Aligned_cols=162  Identities=20%  Similarity=0.197  Sum_probs=128.2

Q ss_pred             hhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc
Q 009130          344 SGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP  422 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~  422 (543)
                      ....+....|.+.+++|.|+.+.+++.+...++..++.++.|+++||++||      +.+..+.++..++.++.. .++.
T Consensus        10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~   83 (379)
T TIGR00881        10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR------VFLPIGLILCAIVNLFFGFSTSL   83 (379)
T ss_pred             hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe------ehhHHHHHHHHHHHHHHHHhhhH
Confidence            334455567777788899999999999999999999999999999999654      567777777777766655 4556


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh-hhhhhhhhhccCCCCccccccchhH
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV-RIIGRIYDRVASGEDHTCYGTHCFM  501 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~-~l~g~l~~~~g~~~~~~~~~~~~~~  501 (543)
                      ..+++..++.|++.+...+...+++.|.+|+++|+++.|+.+....+|.. ++| .+.+.+.+..+            |+
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~------------~~  150 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGG-LLPPLVLFGIAELYS------------WH  150 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHH-HHHHHHHHHHHhcCC------------ch
Confidence            66777888889999988889999999999999999999999999999884 677 45555555554            89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 009130          502 LSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       502 ~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      ..|++.+++.++..++.++..++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~  173 (379)
T TIGR00881       151 WVFIVPGIIAIIVSLICFLLLRD  173 (379)
T ss_pred             hHHHHHHHHHHHHHHHHheeeCC
Confidence            99988887776665555544433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.31  E-value=1.2e-11  Score=127.16  Aligned_cols=179  Identities=13%  Similarity=0.063  Sum_probs=134.5

Q ss_pred             HHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          323 LQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       323 ~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      +...+++.++.+.+..++...........+|.+.++.+.++.+.++..+...++..++.++.|+++||++||      +.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~------~~   84 (417)
T PRK10489         11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRK------KL   84 (417)
T ss_pred             HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCc------eE
Confidence            344568888887777666655555566677888888888999999999999999999999999999999765      33


Q ss_pred             HHHHHHHHHHHHHHHh------hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAIA------SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      +..+.++.+++.....      .++...+++..++.|++.+...+...+.+.|.+|+++++++.++......+|. +++|
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~  163 (417)
T PRK10489         85 ILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGS-VISP  163 (417)
T ss_pred             EEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHH-HhHH
Confidence            4444444443332221      12334455667777888777777778889999999999999999998888988 5899


Q ss_pred             hhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          477 RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       477 ~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                      .+.|.+.+..+            |++.|++.+...++..++.+.
T Consensus       164 ~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~  195 (417)
T PRK10489        164 ALGGLLIAAGG------------VAWNYGLAAAGTFITLLPLLR  195 (417)
T ss_pred             HHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHh
Confidence            99999988776            888888877766665554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.31  E-value=4.2e-11  Score=122.60  Aligned_cols=160  Identities=10%  Similarity=0.028  Sum_probs=126.5

Q ss_pred             hhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcch
Q 009130          346 IATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGN  424 (543)
Q Consensus       346 ~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~  424 (543)
                      ..+...+|.+.+++|.|+.+.++..+.+.++..++.++.|+++||++||      +.+..+.+...++.+... .++...
T Consensus        30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~  103 (406)
T PRK15402         30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR------PVMLAGVAFFILTCLAILLAQSIEQ  103 (406)
T ss_pred             hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHccHHH
Confidence            3355567778889999999999999999999999999999999999654      567777766666665554 455566


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHH
Q 009130          425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSF  504 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f  504 (543)
                      +++..++.|++.+...+...+.+.|.++++++.++.++......++. .++|.+.+.+.+..+            |+..|
T Consensus       104 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~~~------------w~~~~  170 (406)
T PRK15402        104 FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAP-LLGPLVGAALIHVLP------------WRGMF  170 (406)
T ss_pred             HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccC------------ccHHH
Confidence            77778888988887777788889999999999999998877777776 588888888888765            99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 009130          505 MIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       505 ~~~~~~~~~~~i~~~~~~~~  524 (543)
                      ++.+++.+++.+......++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~  190 (406)
T PRK15402        171 VLFAALAALSFFGLWRAMPE  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            98888777766655444443

>TIGR00897 2A0118 polyol permease family

Probab=99.31  E-value=3.6e-11  Score=122.90  Aligned_cols=174  Identities=13%  Similarity=0.048  Sum_probs=124.1

Q ss_pred             hHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHH
Q 009130          330 NFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVA  409 (543)
Q Consensus       330 ~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~  409 (543)
                      .+....+..++..........+++++.+++|.++++.++..+.+.++..++.++.|++.||++||      +.+..+.++
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k------~~l~~~~~~   87 (402)
T TIGR00897        14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL------KTMMIGLLL   87 (402)
T ss_pred             hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH------HHHHHHHHH
Confidence            34444444444444444455677888899999999999999999999999999999999999654      667677776


Q ss_pred             HHHHHHHH---hh--cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 009130          410 MSIGHIAI---AS--GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYD  484 (543)
Q Consensus       410 ~~i~~~~~---~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~  484 (543)
                      ..++.+.+   ..  .+...+++..++.|++.+...+.....+.+.+++|+++++.|+......+|..+++|.+.+.+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~  167 (402)
T TIGR00897        88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP  167 (402)
T ss_pred             HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            66655432   22  23444566677778887776666667788999999999999999988888853477878888887


Q ss_pred             hccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          485 RVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       485 ~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      ..|            ++..++....+..+..++..++
T Consensus       168 ~~g------------~~~~~~~~~~~~~~~~~~~~~~  192 (402)
T TIGR00897       168 AFG------------EMNTLWSALAFVLTGGVIALFS  192 (402)
T ss_pred             ccc------------hHHHHHHHHHHHHHHHHHHHhc
Confidence            766            5555555444444444444343

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.31  E-value=5.1e-11  Score=122.84  Aligned_cols=156  Identities=15%  Similarity=0.084  Sum_probs=125.1

Q ss_pred             HHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130          334 LCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG  413 (543)
Q Consensus       334 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~  413 (543)
                      ..+..+.............|.+.++.|.|+.+.++..+...++..++.++.|+++||+|||      +++..+.+...++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r------~~l~~~~~~~~~~   96 (426)
T PRK12307         23 AWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK------PLMMWSIVAYSVG   96 (426)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHHHH
Confidence            3333333333333445556777788999999999999999999999999999999999654      7788888888777


Q ss_pred             HHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCc
Q 009130          414 HIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDH  492 (543)
Q Consensus       414 ~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~  492 (543)
                      .++.. .++...+++..++.|++.+..++....++.|.+|+|+|+++.|+...+..+|.. +++.+.+.+.+..+     
T Consensus        97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~-~~~~l~~~l~~~~~-----  170 (426)
T PRK12307         97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNI-IAAYFMPSFAEAYG-----  170 (426)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHH-HHHHHHHHHcccCC-----
Confidence            76655 455667788889999999988888899999999999999999999998889984 77777888777665     


Q ss_pred             cccccchhHHHHHHHH
Q 009130          493 TCYGTHCFMLSFMIMA  508 (543)
Q Consensus       493 ~~~~~~~~~~~f~~~~  508 (543)
                             |+..|++..
T Consensus       171 -------w~~~f~i~~  179 (426)
T PRK12307        171 -------WRAAFFVGL  179 (426)
T ss_pred             -------HHHHHHHHH
Confidence                   999988754

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.31  E-value=6.9e-11  Score=120.57  Aligned_cols=171  Identities=13%  Similarity=0.116  Sum_probs=133.7

Q ss_pred             HHHHHHHHhhhchhhhhhhchHHHH-HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHH
Q 009130          332 WFLCIATLCGMGSGIATMNNIAQVG-ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAM  410 (543)
Q Consensus       332 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~  410 (543)
                      +.+....++.....+.....++.++ +++|.|+.+.++..+...+...+.+++.|+++||+++      |+.+..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~------k~~l~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGA------KPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCc------hHHHHHHHHHH
Confidence            3344445555555555666666665 5689999999999999999999999999999999965      46777788887


Q ss_pred             HHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCC
Q 009130          411 SIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASG  489 (543)
Q Consensus       411 ~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~  489 (543)
                      .++++.+. .++.+.+++..++.|++.+...+...+++.|.+|+|+++++.|+......+|. .++|.+.|.+. ..+  
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~-~ig~~l~g~l~-~~g--  162 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGA-VIGALLGSWLL-QYD--  162 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-Hhh--
Confidence            77777665 45556677778888988877777778889999999999999999999999998 48998999988 445  


Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          490 EDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       490 ~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                                |+..|++.+...++..++.....
T Consensus       163 ----------~~~~f~~~~~~~~~~~i~~~~~~  185 (400)
T PRK11646        163 ----------FRLVCATGAVLFVLAAAFNAWLL  185 (400)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHHhC
Confidence                      99999988877776655544433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.30  E-value=2.1e-11  Score=123.09  Aligned_cols=161  Identities=13%  Similarity=0.121  Sum_probs=125.8

Q ss_pred             hchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hc
Q 009130          342 MGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SG  420 (543)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~  420 (543)
                      .+..+.+....|.+.+++|.|.++.++..+.+.++..+++++.|+++||+|||      +.+..+.++.+++.+... .+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r------~~~~~~~~~~~~~~~~~~~~~   89 (377)
T TIGR00890        16 SGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPR------AVAMLGGILYGLGFTFYAIAD   89 (377)
T ss_pred             hhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCcc------chhHHhHHHHHHHHHHHHHHH
Confidence            33345556677888889999999999999999999999999999999999655      566777777777776655 45


Q ss_pred             CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130          421 FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF  500 (543)
Q Consensus       421 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~  500 (543)
                      +...+++...+.|++.+..++.....+.+.++ |+|+++.++...+..+|.. +++++.+.+.+..+            |
T Consensus        90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~------------~  155 (377)
T TIGR00890        90 SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSF-ILSPLITSVINLEG------------V  155 (377)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHh-HHHHHHHHHHhccc------------H
Confidence            55667777778899888877777777777776 6799999999999888885 44446666666555            9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 009130          501 MLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       501 ~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      +..|++.+++.++..+..++..
T Consensus       156 ~~~f~~~~~~~~~~~~~~~~~~  177 (377)
T TIGR00890       156 PAAFIYMGIIFLLVIVLGAFLI  177 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhe
Confidence            9999998887777766655443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.30  E-value=4.9e-10  Score=114.82  Aligned_cols=352  Identities=13%  Similarity=0.053  Sum_probs=202.5

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWAS  112 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~  112 (543)
                      ....|.+++++|++++|++.+.....+.-...++.|.++|.+-          +-.+.||+-++++.++.+++....++ 
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~p----------i~G~rr~~Y~~i~~~~~~~~~~~~~~-   78 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFP----------IFGYRRKPYMIIGWLLGAVSALVLAL-   78 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhccccc----------ccCCcchHHHHHHHHHHHHHHHHHHh-
Confidence            3456899999999999999888888888889999999999985          11223777788888887666555332 


Q ss_pred             HhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhc---CCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhH
Q 009130          113 VVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNF---GHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTY  189 (543)
Q Consensus       113 ~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~f---p~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~  189 (543)
                       ......  +.....++-++..+|.......+-....|.-   |++||...+.......+|++++..+.+.+.+....++
T Consensus        79 -~~~~~~--s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~  155 (433)
T PF03092_consen   79 -LPASES--SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQG  155 (433)
T ss_pred             -cccccc--hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeE
Confidence             121111  2555666777888899999998888888876   3347888888888888999999888877765443333


Q ss_pred             HHHH-HHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhccc
Q 009130          190 ILVL-ALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPL  268 (543)
Q Consensus       190 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (543)
                      .+.+ +.+|.+..+....+.                                                            
T Consensus       156 ~f~i~~~~~~l~~~~~~~~~------------------------------------------------------------  175 (433)
T PF03092_consen  156 VFLISAALPLLMLIVALFLL------------------------------------------------------------  175 (433)
T ss_pred             EehHHHHHHHHHHHHHHHhh------------------------------------------------------------
Confidence            3322 222222211111110                                                            


Q ss_pred             ccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHH-HHHhhhchhhh
Q 009130          269 RVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCI-ATLCGMGSGIA  347 (543)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l-~~~~~~~~~~~  347 (543)
                           ++.++++   +.      +.   ....++++.    ......++.....++.++++..|...+ ..++...... 
T Consensus       176 -----~e~~~~~---~~------~~---~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-  233 (433)
T PF03092_consen  176 -----EERKVRP---AD------EV---FSFGKEEVP----CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPS-  233 (433)
T ss_pred             -----hhccccc---cc------hh---hcccccccc----hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC-
Confidence                 1100000   00      00   000000000    000001223345678888888887666 3222211110 


Q ss_pred             hhhchHHHH--HhhC---CCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHH---Hh-
Q 009130          348 TMNNIAQVG--ESLH---YSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIA---IA-  418 (543)
Q Consensus       348 ~~~~~~~~~--~~~g---~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~---~~-  418 (543)
                      .......+.  ...+   +|+...+.+..+.+++..+|..+..    ++.++.  +-+.++..+.++.++..+.   +. 
T Consensus       234 ~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~----~~~~~~--~~R~~~~~t~~~~~~~~l~~~~lv~  307 (433)
T PF03092_consen  234 ISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYR----KYFSNW--SWRRIFVVTTLVSVLASLFDLLLVT  307 (433)
T ss_pred             CCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHH----HHHhCC--CHHHHHHHHHHHHHHHhcccEEEEE
Confidence            000000111  1234   8877777777666666666666553    333322  2234555555554443332   10 


Q ss_pred             -------hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          419 -------SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       419 -------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                             .++......-.++..+.....+-....+++++.|+..-|+.++++....++|.. ++..+...+.+..+
T Consensus       308 ~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~-~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  308 RWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSS-VSSTLGAFLMELFG  382 (433)
T ss_pred             EEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence                   111222233344555555555555667899999999999999999888888884 66667777777666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK11043 putative transporter; Provisional

Probab=99.30  E-value=1e-10  Score=119.64  Aligned_cols=157  Identities=13%  Similarity=0.160  Sum_probs=124.4

Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNL  425 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~  425 (543)
                      .+...+|.+.+++|.++++.++..+++.++..++.++.|+++||++||      +.+..+.++..++.+... .++...+
T Consensus        24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~l   97 (401)
T PRK11043         24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK------PVLLAGLSLFALGSLGMLWVESAAQL   97 (401)
T ss_pred             HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc------HHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            344455666788899999999999999999999999999999999654      567777766666665554 4455566


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      ++..++.|++.+...+...+.+.|.+++++++.+.+..+....++. .++|.+.+.+.+..+            |+..|+
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~i~~~l~~~~g------------~~~~~~  164 (401)
T PRK11043         98 LVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSP-ALAPLLGAWLLNHFG------------WQAIFA  164 (401)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC------------hHHHHH
Confidence            7777888888777777777889999999999999998888788887 478888999988876            999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 009130          506 IMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~~~  522 (543)
                      +.+++.++..++.+.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~  181 (401)
T PRK11043        165 TLFAITLLLILPTLRLK  181 (401)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            88877777666554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.29  E-value=4.4e-11  Score=120.60  Aligned_cols=181  Identities=16%  Similarity=0.172  Sum_probs=124.7

Q ss_pred             hHHHHHHHHHhhhchhhhhhhchHH-HHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          330 NFWFLCIATLCGMGSGIATMNNIAQ-VGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       330 ~f~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      .+|..++.++......+.+....|. +.+++|+|+.+.++..+...++..++.++.|+++||+|||      +.+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~   75 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR------YTTTLSLL   75 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHH
Confidence            4666777777666666777778885 6678999999999999999999999999999999999654      66777777


Q ss_pred             HHHHHHHHHh-hc-CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 009130          409 AMSIGHIAIA-SG-FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV  486 (543)
Q Consensus       409 ~~~i~~~~~~-~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~  486 (543)
                      +..++.++.. .+ +...+++..++.|++.+ .+.....++.|.+|+++|+++.++......+|.. +++.+.+.+.+..
T Consensus        76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~l~~~~  153 (366)
T TIGR00886        76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGG-VAQFVMPPIIGSL  153 (366)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHH-HHHHHHHHHHHHH
Confidence            7777776665 34 55566777888888754 4555677899999999999999998766656653 4544444444321


Q ss_pred             cCCCCccccccchhHHHHHH-HHHHHHHHHHHHHH
Q 009130          487 ASGEDHTCYGTHCFMLSFMI-MAFVAFFGSLVAFL  520 (543)
Q Consensus       487 g~~~~~~~~~~~~~~~~f~~-~~~~~~~~~i~~~~  520 (543)
                      ....+  .....+|++.|++ .+++..+..++.+.
T Consensus       154 ~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~  186 (366)
T TIGR00886       154 IFGAG--LPAHLAWGWAFVIVPAGILLLPALLIFF  186 (366)
T ss_pred             Hhccc--ccccccccchhHHHHHHHHHHHHHHHHH
Confidence            10000  0011248888843 34444444333333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.29  E-value=7.5e-11  Score=122.45  Aligned_cols=157  Identities=18%  Similarity=0.164  Sum_probs=116.3

Q ss_pred             hhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhc-----Ccc
Q 009130          349 MNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASG-----FPG  423 (543)
Q Consensus       349 ~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-----~~~  423 (543)
                      ....|.+.++ |+++++.++..+...++..++.++.|+++||+|+|      +++..+.++.+++.+++...     +..
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k------~~l~~~~~~~~i~~~~~~~~~~~~~~~~  121 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGLILAAAVMLFMGFVPWATSSIA  121 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc------hhHHHHHHHHHHHHHHHHhhhcccccHH
Confidence            3455666666 99999999999999999999999999999999654      57777777777666655421     233


Q ss_pred             hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHH
Q 009130          424 NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLS  503 (543)
Q Consensus       424 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~  503 (543)
                      .+++..++.|++.+...+.....+.|.+|+++++++.|+.+.+..+|+.+.+|.+...+....+            |+..
T Consensus       122 ~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g------------w~~~  189 (452)
T PRK11273        122 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND------------WHAA  189 (452)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc------------HHHH
Confidence            4566677888888877777777888999999999999999888888864455543322322223            9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 009130          504 FMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       504 f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      |++.+++.++..++.+++.++
T Consensus       190 f~i~~~~~~~~~~l~~~~~~~  210 (452)
T PRK11273        190 LYMPAFAAILVALFAFAMMRD  210 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999887777766655554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.28  E-value=4.5e-11  Score=121.62  Aligned_cols=166  Identities=13%  Similarity=0.080  Sum_probs=128.6

Q ss_pred             chhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHH
Q 009130          328 TGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL  407 (543)
Q Consensus       328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~  407 (543)
                      +|+|+.+.+..++............+.+.++++.++.+.++..+.+.+...+..++.|+++||++||      +++..+.
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr------~vl~~~~   75 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKG------RVMFIAN   75 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCc------hhhHHHH
Confidence            4667777777777655444445555666788899999999999999999999999999999999654      6777777


Q ss_pred             HHHHHHHHHHhh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 009130          408 VAMSIGHIAIAS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV  486 (543)
Q Consensus       408 ~~~~i~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~  486 (543)
                      ++..++.+.+.. .++   ++..++.|++.+...+...++++|.+|+|+++++.|+......++. ++||.++|.+.+..
T Consensus        76 ~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~-~~Gp~lgG~l~~~~  151 (393)
T PRK11195         76 GIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAI-LLGTVLGGALADPH  151 (393)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            766665554332 222   5567788999999999999999999999999999999999888888 58999999998853


Q ss_pred             cCCCCccccccchhHHHHHHHHHHHHHHHH
Q 009130          487 ASGEDHTCYGTHCFMLSFMIMAFVAFFGSL  516 (543)
Q Consensus       487 g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i  516 (543)
                                   |+..+.+.+...+++.+
T Consensus       152 -------------~~~~~~i~~~~~~~~~~  168 (393)
T PRK11195        152 -------------AEAALAVCALIYLLAAL  168 (393)
T ss_pred             -------------HHHHHHHHHHHHHHHHH
Confidence                         66666666555444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.27  E-value=1.8e-12  Score=126.66  Aligned_cols=178  Identities=16%  Similarity=0.205  Sum_probs=143.3

Q ss_pred             HHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHH
Q 009130          333 FLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSI  412 (543)
Q Consensus       333 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i  412 (543)
                      .+++...+...-.+.+....+...+.+|.+++..+++.+.+.+..++..+++|+++||+      +|++++.++.++..+
T Consensus        37 il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry------NR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY------NRKRVIAVGIFIWTL  110 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc------CcceEEeeHHHHHHH
Confidence            34444444444445555555666666799999999999999999999999999999999      555788888888777


Q ss_pred             HHHHHhh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCC
Q 009130          413 GHIAIAS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGED  491 (543)
Q Consensus       413 ~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~  491 (543)
                      +.+...+ ...+.+.+...+.|+|.+...+..+++++|.|+.++|+..+++.+.+..+|+. +|-+..+.+.+.++.   
T Consensus       111 Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsg-lG~vvgs~va~~~~~---  186 (493)
T KOG1330|consen  111 AVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSG-LGYVVGSVVASLTFW---  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccc-eeEEeeeeeccCccc---
Confidence            7666553 34466777899999999999999999999999999999999999999999984 675556666666653   


Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 009130          492 HTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRRF  528 (543)
Q Consensus       492 ~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~  528 (543)
                              ||++|++.+++.++..++..++.++.+|+
T Consensus       187 --------Wr~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  187 --------WRWAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             --------eEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence                    99999999999999999888887766554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.26  E-value=6.6e-11  Score=123.30  Aligned_cols=170  Identities=14%  Similarity=0.142  Sum_probs=133.6

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhh-hhhhcCCCchHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDV-FLHKLGWARPIFMVIT  406 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~-~~~~~~~~r~~~~~~~  406 (543)
                      +.+|.++...+.--..++.+...++.|++ ++|++.+++++..+.+.....+..+++|+++|| +||      ++++..+
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~------r~~~~~g   87 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT------KRTIVLG   87 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch------HHHHHHH
Confidence            44666666666666677777777777764 589999999999999988888888999999999 855      4788888


Q ss_pred             HHHHHHHHHHHhh-cCc-chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcc--hhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          407 LVAMSIGHIAIAS-GFP-GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRH--MGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       407 ~~~~~i~~~~~~~-~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      .++..++.+.+.. .+. ..+++..++.|++.|...+...+++.|.+|+++  ++.+++...++.++|+. ++|.+.|++
T Consensus        88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~-~g~~l~g~l  166 (489)
T PRK10207         88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSL-ISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence            8888888776653 232 234567778899999988889999999998874  57789999999999984 889899999


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHHHHH
Q 009130          483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLV  517 (543)
Q Consensus       483 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~  517 (543)
                      .+..|            |++.|++..+..+++.+.
T Consensus       167 ~~~~g------------w~~~F~i~~i~~~~~~~~  189 (489)
T PRK10207        167 ADKFG------------YSVTYNLCGAGLIIALLV  189 (489)
T ss_pred             HHhhC------------hHHHHHHHHHHHHHHHHH
Confidence            98876            999999876544444433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.25  E-value=9.1e-11  Score=123.53  Aligned_cols=161  Identities=17%  Similarity=0.204  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHH
Q 009130          330 NFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVA  409 (543)
Q Consensus       330 ~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~  409 (543)
                      .+..+++..++............|.+.+++|.|+.+.++..+...++..++.++.|+++||+|||      +.+..+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~   94 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR------LAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHH
Confidence            34455555555444444555567888888999999999999999999999999999999999654      677777777


Q ss_pred             HHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccC
Q 009130          410 MSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS  488 (543)
Q Consensus       410 ~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~  488 (543)
                      ..++.++.. ..+...+++..++.|++.+...+....++.|.+++++++.+.|+...+..+|. +++|.+.+.+.+..+ 
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~-  172 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA-VVAAQVYSLVVPVWG-  172 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCC-
Confidence            777766655 34556677788899999998888888999999999999999999999999998 488888998888766 


Q ss_pred             CCCccccccchhHHHHHHHHH
Q 009130          489 GEDHTCYGTHCFMLSFMIMAF  509 (543)
Q Consensus       489 ~~~~~~~~~~~~~~~f~~~~~  509 (543)
                                 |+..|++...
T Consensus       173 -----------w~~~f~~~~~  182 (496)
T PRK03893        173 -----------WRALFFIGIL  182 (496)
T ss_pred             -----------HHHHHHHHHH
Confidence                       9998876543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.25  E-value=1.3e-10  Score=115.99  Aligned_cols=169  Identities=19%  Similarity=0.310  Sum_probs=137.3

Q ss_pred             HHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130          334 LCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG  413 (543)
Q Consensus       334 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~  413 (543)
                      +....+.............|.+.++.|.++.+.+...+...++..++.++.|+++||++||      +.+..+.+...++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r------~~~~~~~~~~~~~   77 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR------RVLLLGLLLFALG   77 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc------hhhHHHHHHHHHH
Confidence            3344444444445566677888888999999999999999999999999999999999654      5777777777777


Q ss_pred             HHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCc
Q 009130          414 HIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDH  492 (543)
Q Consensus       414 ~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~  492 (543)
                      .+... .++...+++..++.|++.+...+...+++.|.+|+|+|+++.++......+|. .++|.+.+.+.+..+     
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-----  151 (352)
T cd06174          78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA-LLGPLLGGLLAESLG-----  151 (352)
T ss_pred             HHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhh-----
Confidence            76655 45566677788899999999899999999999999999999999999999998 488989999988776     


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          493 TCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       493 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                             |+..+++.+...++..+...++
T Consensus       152 -------~~~~~~~~~~~~~~~~~~~~~~  173 (352)
T cd06174         152 -------WRWLFLILAILGLLLALLLLFL  173 (352)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHH
Confidence                   8999988887777766654433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.23  E-value=5.8e-11  Score=123.82  Aligned_cols=158  Identities=15%  Similarity=0.058  Sum_probs=119.2

Q ss_pred             hhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh------hcC
Q 009130          348 TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA------SGF  421 (543)
Q Consensus       348 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~------~~~  421 (543)
                      +....|.+.+++|.+.++.+++.+.+.++..++.++.|+++||+|+|      +++..+.++..+....+.      .++
T Consensus        48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~  121 (467)
T PRK09556         48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTK------QFLPFLLILSAICMLGFGASLGSGSVS  121 (467)
T ss_pred             hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCcc------chHHHHHHHHHHHHHHHHHHHhcccch
Confidence            44557888889999999999999999999999999999999999755      555555555444433322      245


Q ss_pred             cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhH
Q 009130          422 PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFM  501 (543)
Q Consensus       422 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~  501 (543)
                      ...+++..++.|++.+...+....+++|.+|+++||.+.|+...+..+|+. +++.+..++.+...         ..+|+
T Consensus       122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~-l~~~i~~~~~~~~~---------~~~~~  191 (467)
T PRK09556        122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA-GAGGVALWGANYFF---------DGHVI  191 (467)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh-HHHHHHHHHHHhhc---------cCcch
Confidence            556777788899999988888889999999999999999999998889885 66666666555421         01277


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 009130          502 LSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       502 ~~f~~~~~~~~~~~i~~~~~  521 (543)
                      ..|.+.+.+.++..++.+++
T Consensus       192 ~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        192 GMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHh
Confidence            78877776666555554444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.22  E-value=3.5e-10  Score=115.15  Aligned_cols=150  Identities=13%  Similarity=0.086  Sum_probs=124.1

Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchH
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNL  425 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~  425 (543)
                      .....+|.+.+++|.|..+.++..+.+.++..++.++.|++.||+|||      +++..+.++.+++.+... .++...+
T Consensus        27 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r------~~l~~~~~l~~~~~~~~~~a~~~~~l  100 (393)
T PRK09705         27 SVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER------RSVAISLLLIAVGALMRELYPQSALL  100 (393)
T ss_pred             ccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch------HHHHHHHHHHHHHHHHHHHCcchHHH
Confidence            345667888899999999999999999999999999999999999654      788899999999988776 5667778


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      ++..++.|++.+...+..+.++.+.++ ++++.+.|....+...|. .+++.+.+.+.+...           +|+..+.
T Consensus       101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~-~~g~~~~~~l~~~~~-----------~w~~~~~  167 (393)
T PRK09705        101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGG-GLGAAITPWLVQHSE-----------TWYQTLA  167 (393)
T ss_pred             HHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcC-----------CHHHHHH
Confidence            888999999999988888889999887 789999999988888887 477778888777653           2888877


Q ss_pred             HHHHHHHHHH
Q 009130          506 IMAFVAFFGS  515 (543)
Q Consensus       506 ~~~~~~~~~~  515 (543)
                      +.++..++..
T Consensus       168 ~~~~~~~~~~  177 (393)
T PRK09705        168 WWALPAVVAL  177 (393)
T ss_pred             HHHHHHHHHH
Confidence            6655544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.22  E-value=2.1e-10  Score=116.45  Aligned_cols=151  Identities=11%  Similarity=0.070  Sum_probs=123.3

Q ss_pred             chhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHH
Q 009130          328 TGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL  407 (543)
Q Consensus       328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~  407 (543)
                      ++.++.+.+..++...........+|.+.+++|.|..+.++..+.+.++..+++++.|+++||+|||      +.+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k------~~~~~~~   78 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN------RSYYLAS   78 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHH
Confidence            3457777777776666656677788999999999999999999999999999999999999999765      5666777


Q ss_pred             HHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 009130          408 VAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDR  485 (543)
Q Consensus       408 ~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~  485 (543)
                      ++..++..... .++.+.+++..++.|++.+...+.....+.+..++++++++.|.......+|. .++|.+.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~l~~~  156 (381)
T PRK03633         79 LIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGT-VLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccc
Confidence            77777666555 45666677788899999888777777777788888999999999999899998 4888888887665

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.21  E-value=1.3e-10  Score=121.45  Aligned_cols=152  Identities=20%  Similarity=0.258  Sum_probs=115.0

Q ss_pred             hhhchHHHHHhhCCC--------chhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-
Q 009130          348 TMNNIAQVGESLHYS--------TTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-  418 (543)
Q Consensus       348 ~~~~~~~~~~~~g~s--------~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-  418 (543)
                      +...++....+.+++        ..+.++..+.+.++..++.++.|+++||+|||      +.+..+.++..++.++.. 
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr------~~~~~~~~~~~~~~~~~~~  120 (481)
T TIGR00879        47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK------KSLLIIALLFVIGAILMGL  120 (481)
T ss_pred             hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH------HHHHHHHHHHHHHHHHHHH
Confidence            333445555555555        88999999999999999999999999999654      667777777776666553 


Q ss_pred             hcC---cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhh---hhhhhhccCCCCc
Q 009130          419 SGF---PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRII---GRIYDRVASGEDH  492 (543)
Q Consensus       419 ~~~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~---g~l~~~~g~~~~~  492 (543)
                      ..+   ...+++..++.|++.+...+....++.|.+|+++|+.+.++.+....+|. ++++.+.   +...+..+     
T Consensus       121 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~-----  194 (481)
T TIGR00879       121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI-LVAYGFGSGKVSLNNTLG-----  194 (481)
T ss_pred             hccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH-HHHHHHHHHhhcCCCCcc-----
Confidence            222   22577788899999999988889999999999999999999999888988 4777666   34334433     


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHH
Q 009130          493 TCYGTHCFMLSFMIMAFVAFFGSLVA  518 (543)
Q Consensus       493 ~~~~~~~~~~~f~~~~~~~~~~~i~~  518 (543)
                             |+..|++.+...++..+..
T Consensus       195 -------w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       195 -------WRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             -------HHHHHHHHHHHHHHHHHHH
Confidence                   9999998666555554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=99.21  E-value=2.8e-10  Score=116.00  Aligned_cols=163  Identities=14%  Similarity=0.059  Sum_probs=119.8

Q ss_pred             chhHHHHHHHHHhhhchhhhhhhchHHHH-HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH
Q 009130          328 TGNFWFLCIATLCGMGSGIATMNNIAQVG-ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT  406 (543)
Q Consensus       328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~  406 (543)
                      ++.++.+.+..++...........+|.+. +++|.|+.+.++..+.+.+...+++++.|+++||+|||      +.+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r------~~l~~~   87 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAK------RSALQG   87 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcch------HHHHHH
Confidence            34455555555555444444556667654 67899999999999999999999999999999999654      566666


Q ss_pred             HHHHHHHHHH---Hh-h-----cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhh
Q 009130          407 LVAMSIGHIA---IA-S-----GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVR  477 (543)
Q Consensus       407 ~~~~~i~~~~---~~-~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~  477 (543)
                      .+...++.+.   .. .     .+...+++..++.|++.+...+...+++.|.+|+|+|+++.|....+...+. .++|.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~-~~g~~  166 (392)
T PRK12382         88 MLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGAL-AAGAP  166 (392)
T ss_pred             HHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHH-HHHHH
Confidence            5554443322   11 1     1234466778888998887777777888999999999999999988888887 58888


Q ss_pred             hhhhhhhhccCCCCccccccchhHHHHHHHHH
Q 009130          478 IIGRIYDRVASGEDHTCYGTHCFMLSFMIMAF  509 (543)
Q Consensus       478 l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~  509 (543)
                      +.+.+.+..|            |+..+.+...
T Consensus       167 ~~~~l~~~~g------------~~~~~~~~~~  186 (392)
T PRK12382        167 LGLLLHSHFG------------FAALALTTMV  186 (392)
T ss_pred             HHHHHHhccC------------hHHHHHHHHH
Confidence            8888888766            8776555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.19  E-value=3.3e-10  Score=117.59  Aligned_cols=154  Identities=13%  Similarity=0.092  Sum_probs=120.7

Q ss_pred             hhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHH
Q 009130          348 TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLF  426 (543)
Q Consensus       348 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~  426 (543)
                      +..+.+.+.+++|.+.++.++..+.+.+...++.++.|+++||++||      +.+..+.++..+++++.. .++...++
T Consensus        38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~l~  111 (455)
T TIGR00892        38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR------PVVIAGGLLASLGMILASFSSNVIELY  111 (455)
T ss_pred             hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch------HHHHhhHHHHHHHHHHHHHhhhHHHHH
Confidence            44557788888999999999999999999999999999999999654      567777777777666655 34444444


Q ss_pred             HH-HHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          427 VG-TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       427 ~~-~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      +. .++.|++.+...+....++.+.++ ++|+++.|+.+.+..+|.. ++|.+.+.+.+..|            |+.+|+
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~-~~~~l~~~l~~~~g------------wr~~f~  177 (455)
T TIGR00892       112 LTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLS-TLAPLNQYLFESFG------------WRGSFL  177 (455)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHH-HHHHHHHHHHHHhC------------hHHHHH
Confidence            43 367788888766666677788885 7899999999999999984 78889999998876            999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 009130          506 IMAFVAFFGSLVAFLL  521 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~~  521 (543)
                      +.+++.++..+..+++
T Consensus       178 ~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       178 ILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9988777666554444

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=9.5e-11  Score=112.38  Aligned_cols=149  Identities=20%  Similarity=0.191  Sum_probs=132.1

Q ss_pred             hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHHHHhhhh
Q 009130          359 LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASG-FPGNLFVGTMIVGVCYG  437 (543)
Q Consensus       359 ~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~l~G~~~g  437 (543)
                      .+-+.++.+++++..++.+.+.+++.|.+.||+|+|      ..+.++++.+..+.+++++. +...++++..+-|+|.+
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~------ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA  174 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYK------IPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA  174 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccc------cHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence            456678999999999999999999999999999765      67888999999999999865 45668889999999999


Q ss_pred             hhhhhHHHHHHhhcCCcc-hhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHH
Q 009130          438 SQWSLMPTITSEIFGVRH-MGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSL  516 (543)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~-~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i  516 (543)
                      +..+...++++|.||+++ |+++.|+.....++|- +++|+++|.++|..|            ++.+|.++++++++-..
T Consensus       175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~-lvgPpfGGilYe~~G------------k~aPFlVL~~v~Lld~~  241 (464)
T KOG3764|consen  175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGV-LVGPPFGGILYEFAG------------KSAPFLVLAIVLLLDGA  241 (464)
T ss_pred             HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccc-eecCCcccchHhhcC------------CcCcHHHHHHHHHHHHH
Confidence            999999999999999876 6999999999999998 699999999999998            88999999999999998


Q ss_pred             HHHHHhhcch
Q 009130          517 VAFLLFLRTR  526 (543)
Q Consensus       517 ~~~~~~~~~~  526 (543)
                      +.+++...++
T Consensus       242 L~l~vi~p~~  251 (464)
T KOG3764|consen  242 LQLLVIEPTE  251 (464)
T ss_pred             HHHheeCccc
Confidence            8887765443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.18  E-value=3e-10  Score=118.04  Aligned_cols=177  Identities=16%  Similarity=0.148  Sum_probs=126.6

Q ss_pred             cchhHHHHHHHHHhhhchh-hh---hhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          327 CTGNFWFLCIATLCGMGSG-IA---TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       327 ~~~~f~~~~l~~~~~~~~~-~~---~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      ++++++..+..+.+..... +.   ....++++.+|+|-+ ....++.+...+...++.++.|.++|.+||      ++.
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGR------r~~  110 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGR------RYF  110 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcc------hHH
Confidence            4566666554444432222 12   233456777888865 567788888999999999999999999965      488


Q ss_pred             HHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGR  481 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~  481 (543)
                      ++.+.++.+++.++.+ .++...++....+.|++.|... .....++|..|.|.|....++......+.. ..+|.+...
T Consensus       111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~-~~~~~ia~~  188 (599)
T PF06609_consen  111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITT-WISPLIAQL  188 (599)
T ss_pred             HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhh-cccHHHHHH
Confidence            9999999999999887 5667778888999999977665 456668999999999887776654443333 245544444


Q ss_pred             hhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          482 IYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       482 l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      +....            +||+.|++..++..+++++.+++++.
T Consensus       189 ~~~~~------------~WRw~~~~~~i~~~i~~vl~~~fY~P  219 (599)
T PF06609_consen  189 FAAHS------------GWRWIFYIFIIWSGIALVLIFFFYFP  219 (599)
T ss_pred             hccCC------------CcchHHHHHHHHHHHHHHHHHHHhCC
Confidence            43332            39999999999888888776665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.17  E-value=4.4e-10  Score=114.79  Aligned_cols=165  Identities=14%  Similarity=0.047  Sum_probs=123.8

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHH-HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVG-ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL  407 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~  407 (543)
                      +++..+.+..++...........+|.+. +++|.|+.+.++..+.+.++..+++++.|+++||+|||      +++..+.
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r------~~l~~~~   88 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPK------KAVVFGL   88 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCc------chHHHHH
Confidence            4555566666655555555566677755 56899999999999999999999999999999999655      5666666


Q ss_pred             HHHHHHHHHHh---h-cC-----cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhh
Q 009130          408 VAMSIGHIAIA---S-GF-----PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRI  478 (543)
Q Consensus       408 ~~~~i~~~~~~---~-~~-----~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l  478 (543)
                      ++..++.....   . .+     ...+++..++.|++.+...+....++.|.+++|+|+++.|+......+|. +++|.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~l  167 (399)
T PRK05122         89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGAL-AIGAPL  167 (399)
T ss_pred             HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHH-HHHHHH
Confidence            65554433221   1 11     22456677889999888888888888999999999999999888888877 588888


Q ss_pred             hhhhhhhccCCCCccccccchhHHHHHHHHHHHH
Q 009130          479 IGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAF  512 (543)
Q Consensus       479 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~  512 (543)
                      .+.+.+..|            |+..+++...+.+
T Consensus       168 ~~~l~~~~g------------~~~~~~~~~~~~~  189 (399)
T PRK05122        168 GVLLYHWGG------------LAGLGLLIMLLAL  189 (399)
T ss_pred             HHHHHHccc------------HHHHHHHHHHHHH
Confidence            888888776            8887776555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.16  E-value=3e-10  Score=116.82  Aligned_cols=178  Identities=12%  Similarity=0.063  Sum_probs=115.6

Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      ..++++.+|.+.+.+++.......+..++|.++++ +|+|+.+.+...+...++..+++++.|+++||+++|      +.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r------~~   78 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLK------KH   78 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------HH
Confidence            34567889998888887776666677888888876 899999999999999999999999999999999764      44


Q ss_pred             HHHHHHHHHHHHH---HHhhcCc-c-hHHHH----HHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhh
Q 009130          403 MVITLVAMSIGHI---AIASGFP-G-NLFVG----TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYI  473 (543)
Q Consensus       403 ~~~~~~~~~i~~~---~~~~~~~-~-~~~~~----~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i  473 (543)
                      +.++.....++..   ....... . .....    .+..|.+.....+....+..+ . .++++..+|.......+|. .
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~-~  155 (420)
T PRK09528         79 LLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGW-A  155 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHH-H
Confidence            4443333322221   1111000 0 11111    222232222222233333322 2 2456778888888888888 4


Q ss_pred             hhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          474 CSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       474 ~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      ++|++.|.+.+. +            |+..|++.++..++..++.+..++
T Consensus       156 i~~~~~g~l~~~-~------------~~~~f~~~~~~~~~~~~~~~~~~~  192 (420)
T PRK09528        156 LCAFIAGILFNI-N------------PQINFWLGSGSALILLVLLFFAKP  192 (420)
T ss_pred             HHHHHHHHHHhc-C------------chHhHHHHHHHHHHHHHHHhcccc
Confidence            788888988774 3            788898888777766655554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.15  E-value=5.1e-10  Score=117.30  Aligned_cols=150  Identities=17%  Similarity=0.105  Sum_probs=110.2

Q ss_pred             CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh----------cC---cchHH
Q 009130          360 HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS----------GF---PGNLF  426 (543)
Q Consensus       360 g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----------~~---~~~~~  426 (543)
                      +.++.+.++..+.+.++..++.+++|+++||+|||      +++..+.++.+++.+..+.          .+   ...++
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr------~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR------DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV  124 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence            78888999999999999999999999999999654      6777777776666554332          11   12356


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHH
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMI  506 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~  506 (543)
                      +..++.|++.|+..+..+++++|.+|+++|+++.|+...+..+|.. +++.+.+.+......    ......+||+.|++
T Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~-~~~~~~~~~~~~~~~----~~~~~~gWr~~f~~  199 (479)
T PRK10077        125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL-VVYFVNYFIARSGDA----SWLNTDGWRYMFAS  199 (479)
T ss_pred             HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhccCcc----cccccCChHHHHHH
Confidence            7788999999999999999999999999999999999888888874 555444433221100    00012359999998


Q ss_pred             HHHHHHHHHHHHHH
Q 009130          507 MAFVAFFGSLVAFL  520 (543)
Q Consensus       507 ~~~~~~~~~i~~~~  520 (543)
                      .++..++..+..++
T Consensus       200 ~~~~~~~~~~~~~~  213 (479)
T PRK10077        200 EAIPALLFLMLLYF  213 (479)
T ss_pred             HHHHHHHHHHHHHc
Confidence            87777666554433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.14  E-value=1.6e-10  Score=120.54  Aligned_cols=147  Identities=16%  Similarity=0.181  Sum_probs=119.9

Q ss_pred             hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh---hcCcchHHHHHHHHHh
Q 009130          358 SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA---SGFPGNLFVGTMIVGV  434 (543)
Q Consensus       358 ~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~G~  434 (543)
                      +++++..+.+.+.+.+.++..++.++.|+++||+++|      +.+..+.++..++.++..   ..+...+++..++.|+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~  143 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFK------WSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGL  143 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcc------hhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            5688999999999999999999999999999999654      566666666665554432   2334567778889999


Q ss_pred             hhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc-cCCCCccccccchhHHHHHHHHHHHHH
Q 009130          435 CYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV-ASGEDHTCYGTHCFMLSFMIMAFVAFF  513 (543)
Q Consensus       435 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~-g~~~~~~~~~~~~~~~~f~~~~~~~~~  513 (543)
                      +.+...+....+++|.+|+++|+++.|+...+..+|.. ++|++.+.+.+.. +            |+..|++.++..++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~l~~~l~~~~~g------------w~~~f~i~~~~~~~  210 (465)
T TIGR00894       144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTF-IFLPISGWLCESWGG------------WPMIFYVFGIVGCA  210 (465)
T ss_pred             hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCC------------CCeehhhhhHHHHH
Confidence            99999999999999999999999999999999999984 7888999988874 5            99999998887766


Q ss_pred             HHHHHHHHhh
Q 009130          514 GSLVAFLLFL  523 (543)
Q Consensus       514 ~~i~~~~~~~  523 (543)
                      ..++.+.+.+
T Consensus       211 ~~~~~~~~~~  220 (465)
T TIGR00894       211 WSLLWFVFPA  220 (465)
T ss_pred             HHHHHHHHhc
Confidence            6655555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.14  E-value=6.2e-10  Score=112.56  Aligned_cols=162  Identities=9%  Similarity=0.022  Sum_probs=115.9

Q ss_pred             hhhhhhchHHHH-HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc
Q 009130          345 GIATMNNIAQVG-ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP  422 (543)
Q Consensus       345 ~~~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~  422 (543)
                      .......+|.++ +++|.|+.+.++..+.+.+...+..++.|.++||+|||     +..+..+.+...++.++.. .++.
T Consensus        13 ~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r-----~~~~~~~~~~~~~~~~~~~~~~~~   87 (375)
T TIGR00899        13 GALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDR-----KGLILFCCLLAALACLLFAWNRNY   87 (375)
T ss_pred             HHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHHHHHHhcchH
Confidence            334455666665 56899999999999999999999999999999999754     2344444555445544444 3444


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhH--HHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTI--FNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF  500 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~  500 (543)
                      ..+++..++.|.+.+...+...++..|..+++.++.+  .+.......+|. .++|.+.+.+.+..+            |
T Consensus        88 ~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ig~~~~~~l~~~~~------------~  154 (375)
T TIGR00899        88 FLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAW-VIGPPLAFWLALGFG------------F  154 (375)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHH-HHhhhHHHHHHHhcc------------c
Confidence            4555556666766666666666777888777766644  577777777887 588888999888776            9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          501 MLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       501 ~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      +..|++.+...++..++.++..++
T Consensus       155 ~~~f~~~~~~~~~~~~~~~~~~~~  178 (375)
T TIGR00899       155 TVMFLTAALAFVLCGVLVWLFLPS  178 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999988777776665554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.12  E-value=1.3e-09  Score=108.97  Aligned_cols=160  Identities=9%  Similarity=0.019  Sum_probs=130.4

Q ss_pred             hhchHHHHHhhCCCchh-hHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHH
Q 009130          349 MNNIAQVGESLHYSTTE-INSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLF  426 (543)
Q Consensus       349 ~~~~~~~~~~~g~s~~~-a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~  426 (543)
                      ....|++.+++|+++++ .+.+.+.+..+..+..+..|+++||+|.|      +++..+.+...+...+.. ..+...+.
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K------~vL~l~~l~Wsl~t~L~~fa~Sl~~L~  119 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK------PVLVLQALSFVCVWLLLLLGTSVWHMQ  119 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456677789999999 99999999999999999999999999754      677777777777666655 34667788


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHH
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMI  506 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~  506 (543)
                      +..++.|++.|+.+ ....++.+.+|+++|+++.|+.+.+..+|.. +++++.+.+. ..|         -+.|+...++
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~-Ia~~L~qll~-s~g---------Wr~y~~Ln~I  187 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVF-LSSVLGQLLV-TLG---------WISYSTLNII  187 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hcC---------chhHHHHHHH
Confidence            89999999999999 8889999999999999999999999999995 7777777743 333         2347777778


Q ss_pred             HHHHHHHHHHHHHHHhhcch
Q 009130          507 MAFVAFFGSLVAFLLFLRTR  526 (543)
Q Consensus       507 ~~~~~~~~~i~~~~~~~~~~  526 (543)
                      ..+...+++++++++.+.+|
T Consensus       188 sl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       188 SLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHHHHHhCCCCch
Confidence            88888888888888765444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.12  E-value=8.9e-10  Score=112.43  Aligned_cols=173  Identities=14%  Similarity=0.089  Sum_probs=118.7

Q ss_pred             chhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH
Q 009130          328 TGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT  406 (543)
Q Consensus       328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~  406 (543)
                      ||.+|.+....++.......+..++|.++++ +|+++.+.+...+...+...+++++.|+++||+|||      +.+..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr------~~~~~~   74 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLK------KHLLWI   74 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHH
Confidence            5788888888887777766777788888765 799999999999999999999999999999999765      444444


Q ss_pred             HHHHHHHHH---HHhhcC------cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhh
Q 009130          407 LVAMSIGHI---AIASGF------PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVR  477 (543)
Q Consensus       407 ~~~~~i~~~---~~~~~~------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~  477 (543)
                      .+...++..   .+....      .....+..++.|++.+...+....+..+.-  ++++..+|.......+|. .++|.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~-~~g~~  151 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGW-ALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHH-HHHHH
Confidence            333332222   111111      111233345667777666666666666643  234556777777777887 47888


Q ss_pred             hhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          478 IIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       478 l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      +.|.+.+. +            |+..|++.+.+.++..++.+...
T Consensus       152 ~~g~l~~~-~------------~~~~f~~~~~~~~~~~~~~~~~~  183 (396)
T TIGR00882       152 IAGILFSI-D------------PQIVFWLGSGFALILMLLLMFAK  183 (396)
T ss_pred             HHhhhhcc-C------------chHHHHHHHHHHHHHHHHHHHhC
Confidence            88877654 4            88999988877777665554433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.10  E-value=1.8e-09  Score=110.29  Aligned_cols=181  Identities=12%  Similarity=0.001  Sum_probs=131.2

Q ss_pred             HHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHH
Q 009130          331 FWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAM  410 (543)
Q Consensus       331 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~  410 (543)
                      ++.++..++.............|.+.+++|.|+.+.+++.+...++..++.+..|++.||+|+|      +.+..+.++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r------~~~~~g~~l~   78 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK------AGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------HHHHHHHHHH
Confidence            4555555444433333334666888888999999999999999999999999999999999654      7888888888


Q ss_pred             HHHHHHHhh----cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 009130          411 SIGHIAIAS----GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV  486 (543)
Q Consensus       411 ~i~~~~~~~----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~  486 (543)
                      +++.+++..    ++...+.+..++.|++.|...+..++++.+..|++++++..++.+....+|. .++|.+.+.+....
T Consensus        79 ~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~-~~g~~i~~~l~~~~  157 (410)
T TIGR00885        79 ALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGS-IIGMVVAQQLILSN  157 (410)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence            888776531    2445567778889999999988888899999999999999999988888888 47887777665321


Q ss_pred             cCCC---C-------cc----ccccchhHHHHHHHHHHHHHHHHHH
Q 009130          487 ASGE---D-------HT----CYGTHCFMLSFMIMAFVAFFGSLVA  518 (543)
Q Consensus       487 g~~~---~-------~~----~~~~~~~~~~f~~~~~~~~~~~i~~  518 (543)
                      ....   +       ..    .....+|+.+|++.+++.++..++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1000   0       00    0011358999988887666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.08  E-value=3.3e-09  Score=111.15  Aligned_cols=292  Identities=15%  Similarity=-0.002  Sum_probs=185.6

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      ......+++.|+++.++.|++.+.+-++.. ...+..+...|..               |-+.+-+|.+++++|.+++.+
T Consensus       117 ~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~H---------------rPr~Ig~G~~~m~lgsll~al  181 (735)
T KOG3626|consen  117 NSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGH---------------RPRWIGIGLVLMGLGSLLFAL  181 (735)
T ss_pred             hhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccC---------------ccceeeechhHHHHHHHHHhC
Confidence            344568899999999999999999999987 4558888888876               666677888888888888543


Q ss_pred             H------------H---hcc-----------------------------CCCCChHHHHHHHHHHHhcCcchhhhhHHHH
Q 009130          112 S------------V---VGL-----------------------------LPRPVPVPLMCLFIFTAAHAQNFFNTGNIVT  147 (543)
Q Consensus       112 ~------------~---~~~-----------------------------~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~  147 (543)
                      =            .   ...                             ..+...+..++++-++.|+|....++....+
T Consensus       182 PHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisY  261 (735)
T KOG3626|consen  182 PHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISY  261 (735)
T ss_pred             hHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcc
Confidence            1            0   000                             0010023345668999999999999999999


Q ss_pred             HhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheec--cCCC-Ccccchhhh
Q 009130          148 GVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRI--YGTN-SVDDKKHLN  223 (543)
Q Consensus       148 ~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~  223 (543)
                      +-|+.. ++....+|+......+|+++|-.+++...+-                      .+..  .+.+ .+.+.+|.-
T Consensus       262 iDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~l----------------------YvD~~~~~~~it~~DPrWIG  319 (735)
T KOG3626|consen  262 IDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKL----------------------YVDFGLSPIGITPTDPRWIG  319 (735)
T ss_pred             ccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHe----------------------eeccccCCCCCCCCCcchhh
Confidence            999997 5688999999999999999997777665321                      1111  0000 011111111


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCcc
Q 009130          224 AFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDES  303 (543)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (543)
                      + .++                        .-.+.+.+..+..+++.++-|+.|+..++   .+..+.+...++++..+++
T Consensus       320 A-WWl------------------------GFLi~g~~~~~~a~p~f~fPk~lp~~~~~---~~~~~~~~~k~~~~~~~~~  371 (735)
T KOG3626|consen  320 A-WWL------------------------GFLICGALLLFSAVPLFFFPKELPKSQKR---KRARDLHVLKTESGGAKSD  371 (735)
T ss_pred             H-HHH------------------------HHHHHHHHHHHHHHHHHhCcccCcccccc---chhhhhcccccccccccCC
Confidence            0 111                        11223344455555555554444332211   0000000000000000000


Q ss_pred             chhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHH-Hhhhc
Q 009130          304 KVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIW-NFFGR  381 (543)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~-~~ig~  381 (543)
                      .     ...+.-+......+++++||.|....+...+-.....++..++|-|++. +|.+++.+..+....++. ..+|.
T Consensus       372 ~-----~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi  446 (735)
T KOG3626|consen  372 K-----TFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGI  446 (735)
T ss_pred             c-----chhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhh
Confidence            0     0000112334667889999999999999888888888899999999965 699999999999765554 56799


Q ss_pred             cccccchhhhhhh
Q 009130          382 FGAGYGSDVFLHK  394 (543)
Q Consensus       382 ~~~G~lsD~~~~~  394 (543)
                      +++|++..|+..+
T Consensus       447 ~lGG~iikkfkl~  459 (735)
T KOG3626|consen  447 FLGGLIIKKFKLS  459 (735)
T ss_pred             hccceeeeeeccc
Confidence            9999999988543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.07  E-value=8.1e-08  Score=95.08  Aligned_cols=352  Identities=8%  Similarity=-0.000  Sum_probs=196.3

Q ss_pred             cccccHHHHhh-cCCChhhHH-HHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKST-QNYDQSTLE-RVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        32 ~~~~~~~l~~~-~~~s~~~~~-~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      -+.+.|++.+. .|+|..|+. -+.=...-++. ..+|...+.|..+               .|++++++.+...+...+
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~---------------Ykpviil~~~~~i~t~~l   87 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLR---------------YKPVIILQALSYIITWLL   87 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh---------------hhHHHHHHHHHHHHHHHH
Confidence            34566777775 899999987 33333333333 5668999999998               999999988876666555


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCC--
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGN--  185 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~--  185 (543)
                           .-+.++   ...+-+.-+..|++.+. ..+-.+++-...| ++--++++..-+..-+|-.+++.+++.+.+-.  
T Consensus        88 -----ll~~~s---v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~  158 (412)
T PF01770_consen   88 -----LLFGTS---VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGV  158 (412)
T ss_pred             -----HHHHCc---HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                 223455   78888888888888776 3445555655556 46678898888888888888888888776432  


Q ss_pred             chhHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhh
Q 009130          186 PSTYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLA  265 (543)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (543)
                      +-.....+......++++...+++..+++.                                                  
T Consensus       159 sy~~L~~isl~~~~~a~~~~~fLP~~~~S~--------------------------------------------------  188 (412)
T PF01770_consen  159 SYFQLNYISLASVSLALLIALFLPMPKRSL--------------------------------------------------  188 (412)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCccc--------------------------------------------------
Confidence            223333444444444444444444332210                                                  


Q ss_pred             cccccccccccccccCCCCCCCCCCCCCCccccCC-Cccchhccccc--ccchhhcchhHHHhhcchhHHHHHHHHHhhh
Q 009130          266 SPLRVAITADREDAMTSPKLSTPQQDPLAYHELAD-DESKVTAAFDD--KILKDEEDMNLLQAMCTGNFWFLCIATLCGM  342 (543)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~  342 (543)
                           .+++.+++..   +.++.+.++..+.++.+ ++++.......  ...-+....+.++..++|......+...+..
T Consensus       189 -----~f~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~at  260 (412)
T PF01770_consen  189 -----FFHRKPPAEQ---DANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFAT  260 (412)
T ss_pred             -----ceeccCcccc---ccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence                 0011111000   00000000000000000 00000000000  0000111234455667787666666666665


Q ss_pred             chhhhhhhchHHHHHhh---CCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-
Q 009130          343 GSGIATMNNIAQVGESL---HYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-  418 (543)
Q Consensus       343 ~~~~~~~~~~~~~~~~~---g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-  418 (543)
                      .+..-..++.....++.   +-+..-.|..-++..+.+.++.+..|++..+..+.   + ...+....++.+..++++. 
T Consensus       261 cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~---~-~l~l~~~S~l~a~~L~lm~~  336 (412)
T PF01770_consen  261 CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW---G-ELALGVFSLLQAGLLFLMSF  336 (412)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH---H-HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555   33334556677788888888888888884444321   1 1233333334444444444 


Q ss_pred             hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhh
Q 009130          419 SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPV  469 (543)
Q Consensus       419 ~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i  469 (543)
                      ..+.+..++..++++..+....+....-++.....+.+|.++|+-.....+
T Consensus       337 t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~  387 (412)
T PF01770_consen  337 TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALV  387 (412)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHH
Confidence            445566677777777766666666666666667778888888886554433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.06  E-value=3.8e-09  Score=110.60  Aligned_cols=182  Identities=12%  Similarity=0.005  Sum_probs=127.1

Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      +..++++.+.+....+............+|.++++.|.|.++.+... ..+... ++++++|+++||+.+.+.-+|+..+
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~l   84 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWL   84 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCCCchHHH
Confidence            33445555555555555544555566778889999999998888863 222222 6889999999998322110223456


Q ss_pred             HHHHHHHHHHHHHHhhc----CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhh
Q 009130          404 VITLVAMSIGHIAIASG----FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRII  479 (543)
Q Consensus       404 ~~~~~~~~i~~~~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~  479 (543)
                      ..+.+..+++...++..    +...+.+..++.+++.+...+...++..|.+|+|+|+++.++...+..+|. ++++.+.
T Consensus        85 l~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~-llg~~l~  163 (491)
T PRK11010         85 LATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM-LVSGGLA  163 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence            56666666665554421    223455566777888887778888999999999999999999999999998 4777788


Q ss_pred             hhhhh-hccCCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          480 GRIYD-RVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       480 g~l~~-~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                      +.+.+ ..|            |+..|++.++..++..+..++
T Consensus       164 ~~l~~~~~G------------Wr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        164 LWLADRYLG------------WQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             HHHHhcccC------------HHHHHHHHHHHHHHHHHHHHh
Confidence            88887 345            999999998877776655444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.05  E-value=1.6e-09  Score=109.98  Aligned_cols=160  Identities=9%  Similarity=0.023  Sum_probs=114.1

Q ss_pred             HHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHH
Q 009130          332 WFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMS  411 (543)
Q Consensus       332 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~  411 (543)
                      +.+.+.++...........++|.++++.|+|.++.+...+...+...++.+++|.++||++|+..  .+..+..+..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~--~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII--ALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHH
Confidence            33445555554444556778899999999999999999999999999999999999999975321  1112222221222


Q ss_pred             HHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC
Q 009130          412 IGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE  490 (543)
Q Consensus       412 i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~  490 (543)
                      +  .... .++.+.+++...+.+.+.+...+...+++.+.  ++++++++|.......+|. +++|++.|.+.+..|   
T Consensus        85 ~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~-~~g~~l~g~l~~~~g---  156 (382)
T TIGR00902        85 A--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAF-IIGSALFGGLIGMFD---  156 (382)
T ss_pred             H--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHH-HHHHHHHHHHHHHcC---
Confidence            1  1122 34455566666677777777777766666553  4778999999999999998 589999999999887   


Q ss_pred             CccccccchhHHHHHHHHHH
Q 009130          491 DHTCYGTHCFMLSFMIMAFV  510 (543)
Q Consensus       491 ~~~~~~~~~~~~~f~~~~~~  510 (543)
                               |+..|++....
T Consensus       157 ---------~~~~f~~~~~~  167 (382)
T TIGR00902       157 ---------EQNILAILTAG  167 (382)
T ss_pred             ---------hhHHHHHHHHH
Confidence                     99988877654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PTZ00207 hypothetical protein; Provisional

Probab=99.03  E-value=4e-09  Score=110.44  Aligned_cols=159  Identities=11%  Similarity=0.041  Sum_probs=116.6

Q ss_pred             chhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh---
Q 009130          343 GSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS---  419 (543)
Q Consensus       343 ~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~---  419 (543)
                      +..+.+....+.+.+++|+|.++.+.+.++.... ....++.|++.||+|+      ++++.++.++..++.++...   
T Consensus        41 g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~G~------R~vllig~ll~~iG~ll~ala~~  113 (591)
T PTZ00207         41 SFMYAFNLISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYLGP------RPIFVLSMTVFCLGTLLFALTFQ  113 (591)
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344555666777788999999999888764433 3566678999999954      47888888888888876653   


Q ss_pred             ----cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcccc
Q 009130          420 ----GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCY  495 (543)
Q Consensus       420 ----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~  495 (543)
                          .+.+.+++..++.|++.+...+.....+.+.|| ++||.+.|+......+|+.+++++..+++.+  +        
T Consensus       114 ~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~--------  182 (591)
T PTZ00207        114 EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--N--------  182 (591)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h--------
Confidence                244556777888898888777777777888886 7889999999999999997666655555432  2        


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          496 GTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       496 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                          ++..|++.+++.++..++.+.+.+
T Consensus       183 ----~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        183 ----TSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhee
Confidence                667777777777666666555443

>TIGR00896 CynX cyanate transporter

Probab=99.03  E-value=2.2e-09  Score=107.73  Aligned_cols=149  Identities=16%  Similarity=0.119  Sum_probs=115.7

Q ss_pred             hhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHH
Q 009130          348 TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFV  427 (543)
Q Consensus       348 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~  427 (543)
                      ....+|.+.+++|+|.++.++..+.+.++..++.++.|+++||+++|      +.+..+.+...++.+....++...+++
T Consensus        19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~l~~   92 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE------RSVAAGLLLIAAGILIRSAPGTALLFA   92 (355)
T ss_pred             CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch------HHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45567888999999999999999999999999999999999999654      566666666655555443445556677


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHH
Q 009130          428 GTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIM  507 (543)
Q Consensus       428 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~  507 (543)
                      ..++.|++.+...+..+..+.|.++ ++++++.|+.+....+|.. +++.+.+.+.+..+.          .|+..|.+.
T Consensus        93 ~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-i~~~~~~~l~~~~~~----------~w~~~f~~~  160 (355)
T TIGR00896        93 GTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAA-LAAAATVPLAQHSGG----------HWQQALAWW  160 (355)
T ss_pred             HHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh----------hHHHHHHHH
Confidence            7888899888877777788888886 6899999999988888884 777788877765431          288888776


Q ss_pred             HHHHHHH
Q 009130          508 AFVAFFG  514 (543)
Q Consensus       508 ~~~~~~~  514 (543)
                      ++..++.
T Consensus       161 ~~~~~~~  167 (355)
T TIGR00896       161 ALPALLA  167 (355)
T ss_pred             HHHHHHH
Confidence            6544443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.03  E-value=9.2e-09  Score=107.94  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=96.0

Q ss_pred             HHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcc--------hHHHHHHHHHhhhhhhh
Q 009130          370 ISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPG--------NLFVGTMIVGVCYGSQW  440 (543)
Q Consensus       370 ~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~--------~~~~~~~l~G~~~g~~~  440 (543)
                      .+...++..+|.+++|+++||+|||      +++.++.+++.++.++.+. ++..        .+.+..++.|++.|+.+
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr------~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~  136 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQ------KILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEY  136 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhH
Confidence            4666788889999999999999654      7888888888888877663 3432        26677889999999999


Q ss_pred             hhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHH
Q 009130          441 SLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFF  513 (543)
Q Consensus       441 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~  513 (543)
                      +....++.|.+|+++||...++...+..+|.. +++.+...+....+..    .....+||..|++.+...++
T Consensus       137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~-lg~~~~~~~~~~~~~~----~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV-LGAGVVVLISTIVGEA----NFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHH----HhcCccHHHHHHHHHHHHHH
Confidence            99999999999999999999998877766663 5554433332211000    00012499999987654444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.03  E-value=5.2e-09  Score=109.07  Aligned_cols=175  Identities=16%  Similarity=0.095  Sum_probs=135.5

Q ss_pred             HHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          323 LQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       323 ~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      +..+|+|.|..+++...+...+........+-+..+..-|+...++......+-.++..++.|.+.||+.|      |++
T Consensus         4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~dr------rri   77 (524)
T PF05977_consen    4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDR------RRI   77 (524)
T ss_pred             cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------hHH
Confidence            45578899988888887776665555555566666666678888888888888899999999999999954      466


Q ss_pred             HHHHHHHHHHHHHHH---h---hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAI---A---SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~---~---~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      ++.+-++..+....+   .   ..+++.+++..++.|.+.....+...++++|+.|+++...+.++..+..++.. ++||
T Consensus        78 li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar-~iGP  156 (524)
T PF05977_consen   78 LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIAR-IIGP  156 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH-hccc
Confidence            766665554433222   1   23456677788899999988889999999999999999999999999988888 5899


Q ss_pred             hhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHH
Q 009130          477 RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSL  516 (543)
Q Consensus       477 ~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i  516 (543)
                      .++|.+....|            ....|.+.++..++..+
T Consensus       157 algG~Lva~~G------------~~~~f~inalsfl~~i~  184 (524)
T PF05977_consen  157 ALGGILVAFFG------------AAAAFLINALSFLISIL  184 (524)
T ss_pred             hHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence            99999998887            67788877765555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.03  E-value=5.2e-09  Score=106.63  Aligned_cols=178  Identities=9%  Similarity=0.000  Sum_probs=113.7

Q ss_pred             chhHHHHHHHHHhhhchhhhhhhchHHHH-HhhCCCchhhHHHHHHHHH-HHhhhccccccchhhhhhhcCCCchHHHHH
Q 009130          328 TGNFWFLCIATLCGMGSGIATMNNIAQVG-ESLHYSTTEINSLISLWSI-WNFFGRFGAGYGSDVFLHKLGWARPIFMVI  405 (543)
Q Consensus       328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i-~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~  405 (543)
                      |.+.+.+.+..++.......+...+|.+. +++|.|+++.++..+...+ +..++.+..++ +||+++|     +.++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r-----~~~~~~   87 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDR-----KSLIVF   87 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccch-----hHHHHH
Confidence            44456666666665555555566677765 5679999999999876655 55556666666 9999764     234444


Q ss_pred             HHHHHHHHHHHHhh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcch--hhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          406 TLVAMSIGHIAIAS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHM--GTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       406 ~~~~~~i~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      +.+...+...++.. ++...+++...+.+...+...+....+..+..+++++  +...+..+.+..+|. +++|++.+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~-~~g~~i~~~l  166 (393)
T PRK15011         88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAW-VIGPPLAYAL  166 (393)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence            44544444444443 3333333333333433344455556667776665544  344577788888988 5899999999


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       483 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .|..|            |+..|++.+...++..+...+..++
T Consensus       167 ~~~~g------------w~~~f~~~~~~~~~~~~~~~~~~~~  196 (393)
T PRK15011        167 AMGFS------------FTVMYLSAAVAFIVCGVMVWLFLPS  196 (393)
T ss_pred             HHhcC------------hHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            98877            9999999887777766655554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.03  E-value=5.6e-09  Score=106.78  Aligned_cols=160  Identities=14%  Similarity=0.049  Sum_probs=114.6

Q ss_pred             hhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhc-C--
Q 009130          345 GIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASG-F--  421 (543)
Q Consensus       345 ~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-~--  421 (543)
                      .......+|.++++.|+|.++.+++..+...  .+.++++|+++||+..+..-+|++.+..+.+..++++..+... +  
T Consensus        15 ~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~   92 (402)
T PRK11902         15 LALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHA   92 (402)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccc
Confidence            3345667899999999999999998766665  5889999999999921100022346666666666655554422 1  


Q ss_pred             -cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130          422 -PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF  500 (543)
Q Consensus       422 -~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~  500 (543)
                       .+.+++..++.+++.+...+...++++|.+|+|+|+++.++...+..+|. ++++.+.+.+.+...           +|
T Consensus        93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~-i~g~~l~~~l~~~~~-----------gw  160 (402)
T PRK11902         93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAM-LVSGGLALWLADRVL-----------GW  160 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHH-HHHhHHHHHHHhccc-----------CH
Confidence             22344444556666777777888899999999999999999999888887 477777888877532           29


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 009130          501 MLSFMIMAFVAFFGSLVA  518 (543)
Q Consensus       501 ~~~f~~~~~~~~~~~i~~  518 (543)
                      +..|++.++..++..+..
T Consensus       161 ~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        161 GNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999888776655543

>PRK10133 L-fucose transporter; Provisional

Probab=99.02  E-value=5.2e-09  Score=107.97  Aligned_cols=146  Identities=14%  Similarity=0.047  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHH
Q 009130          330 NFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVA  409 (543)
Q Consensus       330 ~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~  409 (543)
                      .+..+.+.++.............|.+.+++|.|+.+.++..+.+.++..++.++.|++.||+|+|      +++..+.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r------~~l~~g~~~  100 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH------HHHHHHHHH
Confidence            45555555555555555566678888888999999999999999999999999999999999654      788888888


Q ss_pred             HHHHHHHH---h-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          410 MSIGHIAI---A-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       410 ~~i~~~~~---~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      ..++.+++   . .++...+++..++.|++.+...+..+.++.|..+++++....++......+|. .++|.+.+.+
T Consensus       101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~-~~g~~~g~~l  176 (438)
T PRK10133        101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA-IIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            88887654   2 34555677788999999999998888888887666666667888888877887 4777665544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.02  E-value=1.2e-09  Score=93.13  Aligned_cols=133  Identities=14%  Similarity=0.201  Sum_probs=104.5

Q ss_pred             HHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHh
Q 009130          371 SLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSE  449 (543)
Q Consensus       371 ~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~  449 (543)
                      +...++..++.++.|++.||++||      +.+..+.....++.+... ..+.....+..++.|++.+...+....++.|
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   78 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRK------PVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD   78 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchh------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            355678888999999999999654      566666666666655554 3455556667788899988888888899999


Q ss_pred             hcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          450 IFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       450 ~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .+|+++++++.|+.+....++. .++|.+.+.+.+..+            |+..+++.....+++.+....+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880        79 IYPPEERGVALGLMSAGIALGP-LLGPPLGGVLAQFLG------------WRAPFLFLAILALAAFILLAFLL  138 (141)
T ss_pred             HCChhhhhHHHHHHHHhHHHHH-HHhHHhHHHHhcccc------------hHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999998 488889999887765            88888888877777666655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.01  E-value=3.2e-09  Score=103.37  Aligned_cols=177  Identities=14%  Similarity=0.130  Sum_probs=122.1

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      ++.|.-.+.+..+......+....+.+-++.|+|+.|.+++.++..+.+.+.|+..|.+.||+|.|      +...++.+
T Consensus        14 ~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR------~~~~~s~~   87 (417)
T COG2223          14 RNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGR------KWTILSML   87 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCch------HHHHHHHH
Confidence            344444444444333333333334455578899999999999999999999999999999999743      34445555


Q ss_pred             HHHHHHHHHh--hc--CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 009130          409 AMSIGHIAIA--SG--FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYD  484 (543)
Q Consensus       409 ~~~i~~~~~~--~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~  484 (543)
                      +..+-++...  ..  +.+.+++..++.|++ |+.++.....+++.||+|++|.+.|+.. .+++|.. +..++...+..
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a-v~q~~~P~v~~  164 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA-VAQLVAPLVAV  164 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHH-HHHHHHHHHHH
Confidence            5444444333  22  233667777788887 5667888889999999999999999997 6667764 44555555555


Q ss_pred             hccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          485 RVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       485 ~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      ..+.         ..|+.+..+.....++..+..++..+
T Consensus       165 ~~g~---------~~w~~~~~i~~~~l~v~~v~~~~~~~  194 (417)
T COG2223         165 AFGF---------LAWRNVAGIYVVALAIAAVLAWLGMN  194 (417)
T ss_pred             HHhh---------HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5430         12788888888888887777666554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.00  E-value=1e-09  Score=117.67  Aligned_cols=166  Identities=11%  Similarity=0.108  Sum_probs=124.1

Q ss_pred             hhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhc--------
Q 009130          349 MNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASG--------  420 (543)
Q Consensus       349 ~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--------  420 (543)
                      ...++++-++++++..+.+++.+.+.++..++.++.|++.||.+||      +.+.++.+++.++.++++.+        
T Consensus        53 ~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~------~~i~~g~ll~~lg~ll~alphf~~~~y~  126 (633)
T TIGR00805        53 NSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRP------IVIGIGCAIMGLGSFLLSLPHFLSGRYS  126 (633)
T ss_pred             HhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcc------eEEEecHHHHHHHHHHHhChHHhcCCcc
Confidence            3445666677899999999999999999999999999999998654      56667777777777665421        


Q ss_pred             ------------------------------------------C--cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcch
Q 009130          421 ------------------------------------------F--PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHM  456 (543)
Q Consensus       421 ------------------------------------------~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~  456 (543)
                                                                +  ...++++.++.|+|.+..++...+++.|.+|++++
T Consensus       127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~  206 (633)
T TIGR00805       127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNS  206 (633)
T ss_pred             ccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcccc
Confidence                                                      0  12355788999999999999999999999999999


Q ss_pred             hhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC----C--cccc-cc---chhHHHHHHHHHHHHHHHHHHHHH
Q 009130          457 GTIFNTISIACPVGSYICSVRIIGRIYDRVASGE----D--HTCY-GT---HCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       457 g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~----~--~~~~-~~---~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      +...|+......+|+ .+++.+++.+.+...+.+    +  .... .+   .+|+..|++.+++.++..+..+++
T Consensus       207 ~~~~~i~~~~~~iG~-~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       207 PLYIGILESIAVFGP-AFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHhhh-HHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999998 489888888876532110    0  0000 11   137777888777766665544433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.00  E-value=7.7e-08  Score=98.22  Aligned_cols=311  Identities=11%  Similarity=0.034  Sum_probs=182.8

Q ss_pred             cccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcc--h
Q 009130           62 SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQN--F  139 (543)
Q Consensus        62 ~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g--~  139 (543)
                      ...+..|.++|++|               ||..+....+...+..+.     ..+..    +|.++    +.|+..+  +
T Consensus        77 i~s~~iG~lSD~~g---------------rk~~L~~~~~~~~l~~~~-----~~~~~----~~~~~----~~~l~g~~~~  128 (463)
T KOG2816|consen   77 ISSPLIGALSDRYG---------------RKVVLLLPLFGTILPALC-----LLFQG----YWFFL----LLGLSGGFSA  128 (463)
T ss_pred             HHHhhhHHhhhhhh---------------hhhhHHHHHHHHHHhHHH-----HHHHH----HHHhh----hcccccchhh
Confidence            35778999999998               999999888887777776     32221    34333    5554333  3


Q ss_pred             hhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccCCCCccc
Q 009130          140 FNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNSVDD  218 (543)
Q Consensus       140 ~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (543)
                      .+....++++|.-. ++|....|+.....+.+..++|.+++.+....+-...+.++....++                  
T Consensus       129 ~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~------------------  190 (463)
T KOG2816|consen  129 IFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGIL------------------  190 (463)
T ss_pred             hhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHH------------------
Confidence            44556677888887 67999999999999999999998888775332221122111111111                  


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCcccc
Q 009130          219 KKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHEL  298 (543)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (543)
                                                                   ........++|+..+++.      ++.+.  .+.+
T Consensus       191 ---------------------------------------------~~~y~~~~l~Esl~~~~~------~~~~~--~~~~  217 (463)
T KOG2816|consen  191 ---------------------------------------------SLLYMLLFLPESLQEKER------SDATL--RELT  217 (463)
T ss_pred             ---------------------------------------------HHHHHhhccccccCcccc------ccccc--cccC
Confidence                                                         111111122222211110      00000  0000


Q ss_pred             CCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh-hhhchHHHHH-hhCCCchhhHHHHHHHHHH
Q 009130          299 ADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA-TMNNIAQVGE-SLHYSTTEINSLISLWSIW  376 (543)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~  376 (543)
                      ..+....    ...+    ......+.-.+|..+.+++..++....... ..-..+.++. ..++++.+.+.+.+..++.
T Consensus       218 ~~~~~~~----~~~~----~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~  289 (463)
T KOG2816|consen  218 PGSLDSS----HVAD----AFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSIL  289 (463)
T ss_pred             CCcccch----hhhh----hhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHH
Confidence            0000000    0000    001111122345555555544433222211 1112222332 3599999999999999999


Q ss_pred             Hhhhccccc-cchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCc
Q 009130          377 NFFGRFGAG-YGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVR  454 (543)
Q Consensus       377 ~~ig~~~~G-~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~  454 (543)
                      ..++.++.. .+.-.++.|      .++..++....+....+++ ..++..+....+. ...+...+..-+.++...+++
T Consensus       290 ~~i~~l~~~~~l~~~l~~~------~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~~  362 (463)
T KOG2816|consen  290 GIISQLLLLPLLSSILGEK------RLISLGLLSEFLQLLLFAFATETWMMFAAGVVV-ALAGIVFPAIRAFASILVSPE  362 (463)
T ss_pred             HHHHHHHHHHHHHHHHhhh------hHhhHHHHHHHHHHHHHHHhccchhhhHHHHHH-HhhcchhHHHHhHHHhhcccc
Confidence            999998877 555555432      4777888888888888774 4445545544443 344556677788899999999


Q ss_pred             chhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          455 HMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       455 ~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      ++|++++++.....+.+ +++|.+.+.++..+-
T Consensus       363 e~g~v~~~is~i~~l~~-~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  363 EQGKVFGIISGIEGLSG-VVSPALYGNIFALTL  394 (463)
T ss_pred             cccchhhHHHHHHHHhh-hhhHHHHHHHHHHHH
Confidence            99999999999988888 478888888766553

>TIGR00898 2A0119 cation transport protein

Probab=98.99  E-value=1.9e-09  Score=113.73  Aligned_cols=148  Identities=16%  Similarity=0.205  Sum_probs=118.9

Q ss_pred             chHHHHHhhCCC---chhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHH
Q 009130          351 NIAQVGESLHYS---TTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLF  426 (543)
Q Consensus       351 ~~~~~~~~~g~s---~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~  426 (543)
                      ..+.+.++.+++   +.+.++..+++.++..++.++.|+++||+|||      +.+.++.++..++.++.. .++...++
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr------~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRK------KVLLLSTLVTAVSGVLTAFSPNYTVFL  184 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccch------HHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            456667788888   88999999999999999999999999999654      677777777777766655 45666778


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHH
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMI  506 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~  506 (543)
                      +..++.|++.+...+....++.|.+|+++|+.+.++...+..+|. +++|.+.+.+.+               |+..|++
T Consensus       185 ~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~---------------wr~~~~~  248 (505)
T TIGR00898       185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGL-VLLPLVAYFIPD---------------WRWLQLA  248 (505)
T ss_pred             HHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhH---------------HHHHHHH
Confidence            888999999999999999999999999999999999988888887 466655544322               8899988


Q ss_pred             HHHHHHHHHHHHHH
Q 009130          507 MAFVAFFGSLVAFL  520 (543)
Q Consensus       507 ~~~~~~~~~i~~~~  520 (543)
                      .++..++..+..++
T Consensus       249 ~~i~~~~~~~~~~~  262 (505)
T TIGR00898       249 VSLPTFLFFLLSWF  262 (505)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88777766655533

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.99  E-value=1.2e-08  Score=105.22  Aligned_cols=157  Identities=15%  Similarity=0.144  Sum_probs=104.6

Q ss_pred             hhhhchHHHHHhhC---CCchh---hHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-
Q 009130          347 ATMNNIAQVGESLH---YSTTE---INSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-  419 (543)
Q Consensus       347 ~~~~~~~~~~~~~g---~s~~~---a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-  419 (543)
                      .+....|.+.++.+   .+..+   .+..++...++..+|.+++|+++||+|||      +.+..+.++..++.+..+. 
T Consensus        40 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr------~~l~~~~~~~~~~~~~~~~~  113 (432)
T PRK10406         40 VYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRK------KSMLISVCMMCFGSLVIACL  113 (432)
T ss_pred             HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHhhc
Confidence            33444455666653   44443   33344555666669999999999999654      7888888888887776653 


Q ss_pred             cCc--------chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCC
Q 009130          420 GFP--------GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGED  491 (543)
Q Consensus       420 ~~~--------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~  491 (543)
                      ++.        ..+.+..++.|++.|+.++...+++.|.+|+++|+.+.++...+...|. ++++.+...+....++.+ 
T Consensus       114 ~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~-  191 (432)
T PRK10406        114 PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQ-LLALLVVVVLQQTLEDAE-  191 (432)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHH-
Confidence            332        2467788899999999999999999999999999999998877666665 355444333321110000 


Q ss_pred             ccccccchhHHHHHHHHHHHHHH
Q 009130          492 HTCYGTHCFMLSFMIMAFVAFFG  514 (543)
Q Consensus       492 ~~~~~~~~~~~~f~~~~~~~~~~  514 (543)
                         ....+||..|++.++..++.
T Consensus       192 ---~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        192 ---LREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             ---HhccchHHHHHHHHHHHHHH
Confidence               00124999998876655543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.98  E-value=1.7e-08  Score=103.47  Aligned_cols=176  Identities=12%  Similarity=0.066  Sum_probs=117.6

Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCch-HHHHHHHHHHHHHHHHHhh-cCc--
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARP-IFMVITLVAMSIGHIAIAS-GFP--  422 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~-~~~~~~~~~~~i~~~~~~~-~~~--  422 (543)
                      ....++++|++++|.+....+....+..+.+.+..++.|+++||...|.  +|+ +.+..+.+..+++++++.. .+.  
T Consensus        22 l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~--GRRrp~il~g~~~~~~~l~ll~~~~~~~~   99 (477)
T TIGR01301        22 LQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF--GRRRPFIAAGAALVAFAVILIGFAADIGH   99 (477)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC--CChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence            3455677788899999999999999999999999999999999632221  333 3444445555555555542 111  


Q ss_pred             ---------------chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcch--hhHHHHHHhhhhhhhhhhhhhhhhhh--h
Q 009130          423 ---------------GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHM--GTIFNTISIACPVGSYICSVRIIGRI--Y  483 (543)
Q Consensus       423 ---------------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~ig~~i~~~~l~g~l--~  483 (543)
                                     ....+...+..++.+...+...++++|..|++++  +.+++......++|+ ++++.+.+..  .
T Consensus       100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~-ilg~~~g~~~~~~  178 (477)
T TIGR01301       100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN-VLGYAAGAYSGLY  178 (477)
T ss_pred             hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Confidence                           0112223344556777777778899999998865  678998888888888 4777666553  2


Q ss_pred             hhccCCCCccc-cccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009130          484 DRVASGEDHTC-YGTHCFMLSFMIMAFVAFFGSLVAFLLFLRT  525 (543)
Q Consensus       484 ~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  525 (543)
                      +..+-..+..| ....+++..|++.+++.+++.++.++..+|.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            22221111111 1233689999999998888888887766654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.98  E-value=5.3e-09  Score=89.19  Aligned_cols=119  Identities=12%  Similarity=0.104  Sum_probs=99.3

Q ss_pred             ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhh
Q 009130           63 AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNT  142 (543)
Q Consensus        63 ~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~  142 (543)
                      .+++.|++.||+|               ||+.+..+..+..++.+.     ....++   .+.+.+.+++.|++.+...+
T Consensus        14 ~~~~~g~~~d~~g---------------~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~g~~~~~~~~   70 (141)
T TIGR00880        14 YSPLSGLLTDRFG---------------RKPVLLVGLFIFVLSTAM-----FALSSN---ITVLIIARFLQGFGAAFALV   70 (141)
T ss_pred             HHhhHHHHHhhcc---------------hhHHHHHHHHHHHHHHHH-----HHHhcc---HHHHHHHHHHHHHHHHHHHH
Confidence            4678889999998               999999999988888887     444555   78888899999999999989


Q ss_pred             hHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Q 009130          143 GNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLF  204 (543)
Q Consensus       143 ~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  204 (543)
                      .....+.|.+| ++|+++.++......+|..+++.+.+.+.+..+|++.+....+..++..+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL  133 (141)
T ss_pred             hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            88899999998 679999999999999999999999999887777877766655554444333

>PRK09952 shikimate transporter; Provisional

Probab=98.97  E-value=3e-08  Score=102.53  Aligned_cols=141  Identities=15%  Similarity=0.149  Sum_probs=98.2

Q ss_pred             CCCchhhHHHH-----HHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcc--------hH
Q 009130          360 HYSTTEINSLI-----SLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPG--------NL  425 (543)
Q Consensus       360 g~s~~~a~~~~-----~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~--------~~  425 (543)
                      +.++.+ +...     ++..++..+|.++.|+++||+|||      +.+..+.++..++.++.+. ++..        .+
T Consensus        56 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  128 (438)
T PRK09952         56 QVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK------RMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLL  128 (438)
T ss_pred             CCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            566553 3332     234455678888999999999654      6788888888888777663 3432        36


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      .+..++.|++.|+.++....++.|.+|+++|+...+....+..+|.. +++.+...+....+..    .+...+||..|+
T Consensus       129 ~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~-l~~~~~~~l~~~~~~~----~~~~~gWr~~f~  203 (438)
T PRK09952        129 VTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLL-LSTGLVSLISMMTTDE----QFLSWGWRIPFL  203 (438)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHH----HhhccChHHHHH
Confidence            66788999999999988889999999999999999998888888874 5554554443221100    001124999998


Q ss_pred             HHHHHHH
Q 009130          506 IMAFVAF  512 (543)
Q Consensus       506 ~~~~~~~  512 (543)
                      +.++..+
T Consensus       204 ~~~~~~l  210 (438)
T PRK09952        204 FSIVLVL  210 (438)
T ss_pred             HHHHHHH
Confidence            7766543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.97  E-value=5.4e-09  Score=106.09  Aligned_cols=151  Identities=9%  Similarity=0.022  Sum_probs=108.6

Q ss_pred             hhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcch
Q 009130          346 IATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGN  424 (543)
Q Consensus       346 ~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~  424 (543)
                      ..+...+|.+.++.|.|..+.+...+.+.+...++.++.|.++||++|++. . +..+.+..+..  ...... .++.+.
T Consensus        21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~   96 (382)
T PRK11128         21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIP-A-LRLLALLTLLF--AVAFWFGAHSFWL   96 (382)
T ss_pred             HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHH-H-HHHHHHHHHHH--HHHHHHhcccHHH
Confidence            345677888999999999999999999999999999999999999987421 1 11222222111  111122 244455


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHH
Q 009130          425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSF  504 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f  504 (543)
                      +++..++.|++.+...+...+++.+.  .++++.++|.....+.+|. .++|.+.+++.+..|            |+..|
T Consensus        97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~-~igp~lgg~l~~~~g------------~~~~f  161 (382)
T PRK11128         97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAF-VIGSALTGKLVSWFG------------EQAIL  161 (382)
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHH-HHHHHHHHHHHHHcC------------hhHHH
Confidence            56666777888777777666666664  4567888888888888887 589999999999887            99999


Q ss_pred             HHHHHHHHHHH
Q 009130          505 MIMAFVAFFGS  515 (543)
Q Consensus       505 ~~~~~~~~~~~  515 (543)
                      ++.++..++..
T Consensus       162 ~~~~~~~~~~~  172 (382)
T PRK11128        162 WILTAGVASML  172 (382)
T ss_pred             HHHHHHHHHHH
Confidence            87776544443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.96  E-value=4e-09  Score=105.06  Aligned_cols=176  Identities=18%  Similarity=0.233  Sum_probs=138.7

Q ss_pred             HHHHHHHHHhhhchhhhhhhchHHHHH-h----hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHH
Q 009130          331 FWFLCIATLCGMGSGIATMNNIAQVGE-S----LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVI  405 (543)
Q Consensus       331 f~~~~l~~~~~~~~~~~~~~~~~~~~~-~----~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~  405 (543)
                      ++.++..=+.=-+++|++-..+..|+. +    +|+|++++..+++.+..-.=+..+++||++||+-     ++++++..
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~L-----G~~~tI~l   97 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVL-----GTRRTIVL   97 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----chhHHHHH
Confidence            344443333333344444444444442 2    4599999999999998888889999999999983     66789999


Q ss_pred             HHHHHHHHHHHHhhc---CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcc--hhhHHHHHHhhhhhhhhhhhhhhhh
Q 009130          406 TLVAMSIGHIAIASG---FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRH--MGTIFNTISIACPVGSYICSVRIIG  480 (543)
Q Consensus       406 ~~~~~~i~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~ig~~i~~~~l~g  480 (543)
                      +.++++++.++++..   .+..++++.+++++|.|..=+...+++.|.+|+++  |-..+++..++.++|+ +++|++.+
T Consensus        98 Gail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs-l~~p~i~~  176 (498)
T COG3104          98 GAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS-LIAPIITG  176 (498)
T ss_pred             HHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH-HHHHHHHH
Confidence            999999999988843   46778999999999999988999999999999764  5567777789999998 59999999


Q ss_pred             hhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          481 RIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       481 ~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      ++.+..|            |+..|-..++-+..+.+..+..+++
T Consensus       177 ~~~~~~g------------~~~gF~~aavGm~~gl~~f~~~~r~  208 (498)
T COG3104         177 LLAINYG------------WHVGFGLAAVGMIIGLVIFLLGRRH  208 (498)
T ss_pred             HHHHhhC------------HHHHHHHHHHHHHHHHHHHHHccch
Confidence            9999987            9999999999999998877666543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.95  E-value=1.7e-08  Score=106.37  Aligned_cols=150  Identities=16%  Similarity=0.145  Sum_probs=107.4

Q ss_pred             CCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cC------cchHHHHHHHHH
Q 009130          361 YSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GF------PGNLFVGTMIVG  433 (543)
Q Consensus       361 ~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~------~~~~~~~~~l~G  433 (543)
                      .+..+.+++.+...++..++.+++|+++||+|||      +.+.++.++..++.++... .+      ...+++..++.|
T Consensus        53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G  126 (502)
T TIGR00887        53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRK------RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG  126 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHH
Confidence            4455678889999999999999999999999654      6777777777666655442 22      245777888999


Q ss_pred             hhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccC----CC-C----ccc--cccchhHH
Q 009130          434 VCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVAS----GE-D----HTC--YGTHCFML  502 (543)
Q Consensus       434 ~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~----~~-~----~~~--~~~~~~~~  502 (543)
                      ++.|...+..+.++.|.+|+++|+.+.++......+|. ++++.+...+......    .+ .    ..+  ....+||.
T Consensus       127 ~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~  205 (502)
T TIGR00887       127 VGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGI-LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRI  205 (502)
T ss_pred             HHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccccccccccccccccchhcccHHH
Confidence            99999999999999999999999999999988888887 4666665544331110    00 0    000  01125999


Q ss_pred             HHHHHHHHHHHHHHH
Q 009130          503 SFMIMAFVAFFGSLV  517 (543)
Q Consensus       503 ~f~~~~~~~~~~~i~  517 (543)
                      .|.+.++..++..+.
T Consensus       206 ~~~~~~ip~~i~~~~  220 (502)
T TIGR00887       206 LIGFGAVPALLALYF  220 (502)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            997776655554444

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00901 2A0125 AmpG-related permease

Probab=98.94  E-value=1.4e-08  Score=102.01  Aligned_cols=169  Identities=14%  Similarity=0.018  Sum_probs=114.9

Q ss_pred             hhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchH-HHHHHHHHHHHHHHHHhhc----Cc
Q 009130          348 TMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPI-FMVITLVAMSIGHIAIASG----FP  422 (543)
Q Consensus       348 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~-~~~~~~~~~~i~~~~~~~~----~~  422 (543)
                      ....+|.+.++.|+|.++.+..... .+...+ ++++|+++||+..|+ ++|++ .+..+.+...+....+...    +.
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~-~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l   83 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPF-FGRRRSWLVLTQVLLLSLLLILSFLVPSTDL   83 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCC-CCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence            3456788899999999999988655 444444 889999999985321 23444 4555666665554444421    11


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHH
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFML  502 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~  502 (543)
                      ..+....++.+++.+...+...+++.|.+|+|+|+.+.|+...+..+|. ++++.+.+.+.+..+..+    ....+|+.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~-~~~~~l~~~l~~~~g~~~----~~~~~wr~  158 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGM-LLSGSLALVLASPEFANT----GLITLWGY  158 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHH-HHHHHHHHHHhhhccccc----ccccccHH
Confidence            2233344455666666667778899999999999999999999998988 478888888877654100    12235999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Q 009130          503 SFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       503 ~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .|++.++..++..+..++..+|
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~e  180 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAKE  180 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhccC
Confidence            9998888777766555544444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.94  E-value=5.1e-09  Score=107.28  Aligned_cols=148  Identities=16%  Similarity=0.219  Sum_probs=126.7

Q ss_pred             hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh---hcCcchHHHHHHHHHh
Q 009130          358 SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA---SGFPGNLFVGTMIVGV  434 (543)
Q Consensus       358 ~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~l~G~  434 (543)
                      ++.++.++-+++++....+.+++.+..|++.||+|.|      +++..+.++.++..++..   ..+.+.+++..++.|+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r------~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl  140 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGAR------RVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL  140 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCch------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence            3578899999999999999999999999999999754      577777777777766654   2344567888999999


Q ss_pred             hhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhh-ccCCCCccccccchhHHHHHHHHHHHHH
Q 009130          435 CYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDR-VASGEDHTCYGTHCFMLSFMIMAFVAFF  513 (543)
Q Consensus       435 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~-~g~~~~~~~~~~~~~~~~f~~~~~~~~~  513 (543)
                      +.|..++....+..+-.|+++|++..++...+..+|.+ ++-++.|++-+. .|            |+..||+.+++.++
T Consensus       141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v-~~mp~sg~lc~s~~G------------W~sifY~~g~~g~i  207 (466)
T KOG2532|consen  141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTI-ITMPVSGLLCESSLG------------WPSIFYVFGIVGLI  207 (466)
T ss_pred             HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccCCC------------CchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999995 666689999998 55            99999999999888


Q ss_pred             HHHHHHHHhhc
Q 009130          514 GSLVAFLLFLR  524 (543)
Q Consensus       514 ~~i~~~~~~~~  524 (543)
                      -.++.+++..+
T Consensus       208 ~~~~w~~~~~d  218 (466)
T KOG2532|consen  208 WFILWFLFYSD  218 (466)
T ss_pred             HHHHHHHHhcC
Confidence            88877766653

>PRK15075 citrate-proton symporter; Provisional

Probab=98.93  E-value=3.2e-08  Score=102.25  Aligned_cols=166  Identities=14%  Similarity=0.094  Sum_probs=109.8

Q ss_pred             HHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHH-HHH-----HHHHhhhccccccchhhhhhhcCCCchHHHHH
Q 009130          332 WFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLI-SLW-----SIWNFFGRFGAGYGSDVFLHKLGWARPIFMVI  405 (543)
Q Consensus       332 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~-~~~-----~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~  405 (543)
                      ...++..++.......+....|.+.++++.++.+.+.+. +..     .+...+|.++.|+++||+|||      +.+..
T Consensus        18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr------~~l~~   91 (434)
T PRK15075         18 LRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR------KGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH------HHHHH
Confidence            344444555545555566677888888988776644332 222     233346888999999999654      67777


Q ss_pred             HHHHHHHHHHHHhh-cCcc--------hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          406 TLVAMSIGHIAIAS-GFPG--------NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       406 ~~~~~~i~~~~~~~-~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      +.++..++.++... ++..        .+++..++.|++.+...+....+++|.+|+++|+++.++......++. .+++
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~-~~g~  170 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV-VFAA  170 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH-HHHH
Confidence            88777777776663 3332        246678899999998888888999999999999999999887776665 3555


Q ss_pred             hhhhhhhhhccCCCCccccccchhHHHHHHHH
Q 009130          477 RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA  508 (543)
Q Consensus       477 ~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~  508 (543)
                      .+++.+........    ....+|+..|++..
T Consensus       171 ~~g~~l~~~~~~~~----~~~~gWr~~f~~~~  198 (434)
T PRK15075        171 LLGYLLNQWLSPAQ----MAEWGWRIPFLIGC  198 (434)
T ss_pred             HHHHHHHHhCCHHH----HhccchHHHHHHHH
Confidence            45444421110000    00123999998754

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.92  E-value=1.8e-07  Score=90.14  Aligned_cols=90  Identities=11%  Similarity=-0.025  Sum_probs=70.2

Q ss_pred             HHHhhcCCChhhHHHHHHHhhhc-ccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 009130           38 TLKSTQNYDQSTLERVAVFKDMG-GSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGL  116 (543)
Q Consensus        38 ~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~  116 (543)
                      .+-+++|.+..|++.+....... .+++.+.|.++||+|               ||+.-++-+++.+++++.     .. 
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~G---------------rk~~cl~~cily~~scl~-----k~-  117 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYG---------------RKKACLLFCILYSLSCLT-----KH-  117 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------chHHHHHHHHHHHHHHHH-----Hh-
Confidence            44468999999999554544444 458999999999999               999888888888888876     33 


Q ss_pred             CCCCChHHHHHHHHHHHhcCcchhhhhHHHHH-hhh
Q 009130          117 LPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTG-VMN  151 (543)
Q Consensus       117 ~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~-~~~  151 (543)
                      .++   ++.++++|++.|++.+..+.+--+.. .|+
T Consensus       118 ~~~---~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh  150 (354)
T PF05631_consen  118 SSN---YPVLLLGRVLGGIATSLLFSAFESWMVHEH  150 (354)
T ss_pred             ccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344   89999999999999999888766543 444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.91  E-value=1.1e-08  Score=118.91  Aligned_cols=178  Identities=12%  Similarity=0.036  Sum_probs=120.9

Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhchHHH----H-HhhCCC-chhhHHHHHHHHHHHhhhccccccchhhhhhhcCC
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQV----G-ESLHYS-TTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGW  397 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~----~-~~~g~s-~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~  397 (543)
                      .+++++.|..+++..++...........++.+    . .+.+.+ ....++..+++.+..++..++.|+++||++||   
T Consensus         6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk---   82 (1140)
T PRK06814          6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKA---   82 (1140)
T ss_pred             hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHH---
Confidence            45677777777777666554432222111111    1 112222 23466677788899999999999999999765   


Q ss_pred             CchHHHHH----HHHHHHHHHHHHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhh
Q 009130          398 ARPIFMVI----TLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYI  473 (543)
Q Consensus       398 ~r~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i  473 (543)
                         +++..    ..+....+...+...+.+.+++..++.|++.+...+...+++.+.+++++++.++|+..++..+|. +
T Consensus        83 ---~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~-~  158 (1140)
T PRK06814         83 ---KLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAI-L  158 (1140)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHH-H
Confidence               33221    112222222222235667788889999999999999999999999999999999999999999998 5


Q ss_pred             hhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          474 CSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       474 ~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                      ++|.++|++.+..+            |+..|.....+.+++.++.+.
T Consensus       159 igp~l~g~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~  193 (1140)
T PRK06814        159 LGTIIGGLATISGN------------FVILVALLMGIAVLGWLASLF  193 (1140)
T ss_pred             HHHHHHHHHHhccc------------cHHHHHHHHHHHHHHHHHHhh
Confidence            89999999998776            888884444444444443333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.88  E-value=5.3e-09  Score=99.98  Aligned_cols=115  Identities=18%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             CchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHhhhhhhh
Q 009130          362 STTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPGNLFVGTMIVGVCYGSQW  440 (543)
Q Consensus       362 s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~G~~~g~~~  440 (543)
                      +...+|.+-+.+++.+++.++.+|.++||+||      |+++..+++..++.+++.+. .+...+.++.++.|+..|- .
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGR------kpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l  138 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGR------KPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-L  138 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-h
Confidence            44578888999999999999999999999955      58898888888888887774 3443455558888887665 5


Q ss_pred             hhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 009130          441 SLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYD  484 (543)
Q Consensus       441 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~  484 (543)
                      +...++++|++++|+++.+++.++++..+|- ++||.++|++..
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGf-ilGPmIGgyla~  181 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGF-ILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcch-hhcchhhhHHHh
Confidence            6788999999999999999999999999997 699999999877

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.85  E-value=2.4e-08  Score=102.60  Aligned_cols=156  Identities=17%  Similarity=0.232  Sum_probs=120.2

Q ss_pred             HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHhhh
Q 009130          357 ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCY  436 (543)
Q Consensus       357 ~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~  436 (543)
                      +|.++...+.+.+.+++.++.+++.+.++.+.||+.-.     +.+...+.+..+.+.+.....+.+.+.+..++.|+..
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls-----~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~e  148 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLS-----KGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFE  148 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            56678888999999999999999999999999999521     1222222333333333333567778888899999999


Q ss_pred             hhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHH
Q 009130          437 GSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSL  516 (543)
Q Consensus       437 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i  516 (543)
                      ++.+|....++...|++++++...|+.+....+|+ ++|.++...+....+.      .+..+|++.|++-++++++..+
T Consensus       149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~-i~ggliA~g~~~~~~~------~~~~gW~~~FiI~G~i~~~~gi  221 (495)
T KOG2533|consen  149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGN-IFGGLIAYGVFKLNGS------GGLAGWRWLFIIEGVITLVLGI  221 (495)
T ss_pred             cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhh-HHHHHHHHHhhhhcCC------CCcCCceeehhHHHHHHHHHHh
Confidence            99999999999999999999999999999999998 4777777665443321      1345699999999999888887


Q ss_pred             HHHHHhhc
Q 009130          517 VAFLLFLR  524 (543)
Q Consensus       517 ~~~~~~~~  524 (543)
                      +.++..+.
T Consensus       222 ~~f~~lp~  229 (495)
T KOG2533|consen  222 VVFFFLPD  229 (495)
T ss_pred             eEEEEecC
Confidence            76665543

>TIGR00889 2A0110 nucleoside transporter

Probab=98.84  E-value=1.8e-08  Score=103.30  Aligned_cols=155  Identities=9%  Similarity=0.041  Sum_probs=107.8

Q ss_pred             ccHHHHhhcCCCh--------hhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHH
Q 009130           35 YSSTLKSTQNYDQ--------STLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTG  105 (543)
Q Consensus        35 ~~~~l~~~~~~s~--------~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g  105 (543)
                      +.+...++.+.++        ++.+...+...+... ..++.|++.||+|               +|+++.++.++.+++
T Consensus       230 ~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g---------------~r~~l~~~~~~~~v~  294 (418)
T TIGR00889       230 FGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG---------------IKKVMLLSLVAWALR  294 (418)
T ss_pred             hHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------cHHHHHHHHHHHHHH
Confidence            3344445566443        445544444444443 5778999999998               999999999998888


Q ss_pred             HHHHHHHHhccCC-CCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHH-HhhhhhHHHHHHHHHHhc
Q 009130          106 YFLVWASVVGLLP-RPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILK-GFVGLSGAVLTQVYKTVC  182 (543)
Q Consensus       106 ~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~-~~~~lg~~i~~~l~~~l~  182 (543)
                      ..+     ..... +....+.+++.+++.|++.+...+.....+++++| ++||+++|+.+ ...++|.+++|++.+.+.
T Consensus       295 ~~l-----~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~  369 (418)
T TIGR00889       295 FGF-----FAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV  369 (418)
T ss_pred             HHH-----HHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            766     22222 11014566778999999999888888889999999 67999999997 678899999999999887


Q ss_pred             CC------CchhHHHHHHHH-HHHHHHHHHhhee
Q 009130          183 NG------NPSTYILVLALL-PTLVSLLFMSHVR  209 (543)
Q Consensus       183 ~~------~~~~~~~~~~~~-~~~~~~~~~~~~~  209 (543)
                      +.      .+|+..+....+ ..+.+++...+++
T Consensus       370 ~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       370 EKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            54      246665554443 3344444444444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.81  E-value=3.2e-08  Score=102.35  Aligned_cols=169  Identities=11%  Similarity=0.110  Sum_probs=110.5

Q ss_pred             hhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc----
Q 009130          349 MNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP----  422 (543)
Q Consensus       349 ~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~----  422 (543)
                      ..+++.+++ +.|+++.+++.+.++..+..++..++.|+++||.++|.+ +|++.+..+.+...++.+++. .++.    
T Consensus        19 ~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~G-rrr~~i~~~~~~~~i~~~~~~~~~~~~~~~   97 (437)
T TIGR00792        19 STYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWG-KFRPWLLIGAIPFSIVLVLLFTTPDFSATG   97 (437)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCC-CcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence            344555554 579999999999999999999999999999999876542 335666667666666655444 2221    


Q ss_pred             --chHHHHHHHHHhhhhhhhhhHHHHHHhhc-CCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccch
Q 009130          423 --GNLFVGTMIVGVCYGSQWSLMPTITSEIF-GVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHC  499 (543)
Q Consensus       423 --~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~  499 (543)
                        ....+..++.+.+.+.......++.+|.. ++++|++..+.......+|.. +.+.+.+.+....+..+     ...+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~-l~~~~~~~l~~~~~~~~-----~~~g  171 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGL-LVAVIVLPLVSYFGGGD-----DKFG  171 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----cccc
Confidence              12233345556666665556667778876 467899999988777777764 44334444443222100     1125


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          500 FMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       500 ~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      |+..+.+.+++.++..++..+..+|
T Consensus       172 ~~~~~~i~~~l~~~~~~~~~~~~~e  196 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIICFFGTKE  196 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEe
Confidence            9988888888777776665544443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.80  E-value=6.4e-08  Score=102.11  Aligned_cols=142  Identities=22%  Similarity=0.237  Sum_probs=113.6

Q ss_pred             hhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhH
Q 009130          365 EINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLM  443 (543)
Q Consensus       365 ~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~  443 (543)
                      +.+++.+...++..+|.++.|+++|++|||      ..+.++.+...++.++.+ ..+...+++..++.|+|.|......
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk------~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~  163 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRK------KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLA  163 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcc
Confidence            348999999999999999999999999654      788889888888888776 5677889999999999999999999


Q ss_pred             HHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          444 PTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       444 ~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      |.+++|+.|++.||...+.......+|- +++ ++.+...++..          .+||..+.+..+.+++..+. .+..+
T Consensus       164 piy~sEiap~~~RG~l~~~~~l~~~~Gi-~~~-~~~~~~~~~~~----------~~Wr~~~~~~~i~~~~~~~~-~~~~p  230 (513)
T KOG0254|consen  164 PVYISEIAPAHIRGTLVSLYQLFITIGI-LLG-YCINYGTSKVY----------AGWRIPLGLALIPAVILALG-MLFLP  230 (513)
T ss_pred             hhhHhhcCChhhhHHHHHHHHHHHHHHH-HHH-HHHhhhhccCC----------ccHHHHHHHHHHHHHHHHHH-HHhCC
Confidence            9999999999999999999988877665 354 44554444320          13998888877777776666 44444


Q ss_pred             cc
Q 009130          524 RT  525 (543)
Q Consensus       524 ~~  525 (543)
                      +.
T Consensus       231 es  232 (513)
T KOG0254|consen  231 ES  232 (513)
T ss_pred             CC
Confidence            43

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.80  E-value=5.4e-08  Score=113.32  Aligned_cols=155  Identities=12%  Similarity=0.058  Sum_probs=112.0

Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhch-HHHHHhhCCCc--hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCch
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNI-AQVGESLHYST--TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARP  400 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~-~~~~~~~g~s~--~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~  400 (543)
                      +.++++.|+.+++..++...........+ +.+..+++.+.  ...++..+++.++..++.+++|+++||+|||      
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk------   77 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN------   77 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH------
Confidence            34566777777766666544333332223 33334444443  3467788899999999999999999999665      


Q ss_pred             HHHHHHHHHHHHHHHHHh----hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          401 IFMVITLVAMSIGHIAIA----SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       401 ~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      +++.++.++.++..++..    ..+...+++..++.|++.+...+...++++|.+++++++.+.|+..++..+|. ++++
T Consensus        78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~-~lg~  156 (1146)
T PRK08633         78 RVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAI-LAGT  156 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHH-HHHH
Confidence            566666554443333221    34556677788899999998888889999999999999999999999999998 5889


Q ss_pred             hhhhhhhhh
Q 009130          477 RIIGRIYDR  485 (543)
Q Consensus       477 ~l~g~l~~~  485 (543)
                      .+++++.+.
T Consensus       157 ~l~~~l~~~  165 (1146)
T PRK08633        157 ALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHh
Confidence            889988776

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=2.3e-06  Score=86.38  Aligned_cols=318  Identities=11%  Similarity=-0.023  Sum_probs=176.5

Q ss_pred             HHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Q 009130           54 AVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTA  133 (543)
Q Consensus        54 ~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~  133 (543)
                      +..+....+.+++.+.+.|+.|               +|+.+.+|....+.-.+.+      +-.|   -+.+++..++.
T Consensus        57 aiiY~~ftv~~l~~psiv~~i~---------------~K~~lv~ga~~y~~f~~gf------l~~N---~y~~yfssall  112 (461)
T KOG3098|consen   57 AIIYAFFTVSCLFAPSIVNFLG---------------PKWALVIGATCYAAFPLGF------LFPN---SYYLYFSSALL  112 (461)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhh---------------HHHHHHHHhHHHHHHHHHH------Hhcc---hHHHHHHHHHh
Confidence            3444444457889999999999               9999999999887766652      1244   57788899999


Q ss_pred             hcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhheeccC
Q 009130          134 AHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYG  212 (543)
Q Consensus       134 G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (543)
                      |+|.+..+..--.+++++.. +++.+..++.-+....+.++|+.+.-.+..                        .....
T Consensus       113 G~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~------------------------~~~~~  168 (461)
T KOG3098|consen  113 GFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ------------------------FSSSS  168 (461)
T ss_pred             hhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE------------------------ecccc
Confidence            99999999988899999997 678999999888888887777643322210                        01100


Q ss_pred             CCCcc-cchhhh-h-HHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCC
Q 009130          213 TNSVD-DKKHLN-A-FSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQ  289 (543)
Q Consensus       213 ~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (543)
                      ...++ +.+... . +..+-+.                       ....+......+........ |.+..         
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~i~-----------------------~~~~v~~~~~~l~~i~~~~~-p~~~~---------  215 (461)
T KOG3098|consen  169 AIITDGTRRLVFEVLFIDFEIK-----------------------VLFGVLLAISVLSIINFDFL-PSKDV---------  215 (461)
T ss_pred             cccccchhhhhcchhhhhHHHH-----------------------HHHHHHHHHHHHHhhheeec-Cccch---------
Confidence            00000 000000 0 0000000                       00000000000000000000 00000         


Q ss_pred             CCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHH---hhCCCch-h
Q 009130          290 QDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGE---SLHYSTT-E  365 (543)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~---~~g~s~~-~  365 (543)
                                ..+.+     ..+....+..+...+++++++...+...++.............|....   ..+.+.. -
T Consensus       216 ----------~~~~~-----~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~  280 (461)
T KOG3098|consen  216 ----------VNCKS-----SSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYL  280 (461)
T ss_pred             ----------hhhhh-----hccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhH
Confidence                      00000     000011111123356677888777776665543333333444444332   2333332 2


Q ss_pred             hHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh--hc--C---------------cchHH
Q 009130          366 INSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA--SG--F---------------PGNLF  426 (543)
Q Consensus       366 a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~--~~--~---------------~~~~~  426 (543)
                      .+......+++..++....+.+++|..+.   +|.+++.++.++..+.+++..  .+  .               .....
T Consensus       281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~f---g~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~  357 (461)
T KOG3098|consen  281 IAIYSIGIGLGEVIGGLDFSILSKRIRGF---GRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLAL  357 (461)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhhhhhc---ccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHH
Confidence            33334455666777777778888777544   777888777777666655432  11  1               01234


Q ss_pred             HHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhh
Q 009130          427 VGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGS  471 (543)
Q Consensus       427 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~  471 (543)
                      +..++.|++-....+..+.++.+.. ++++.++.++.-.-..+++
T Consensus       358 ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s  401 (461)
T KOG3098|consen  358 IIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVAS  401 (461)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHH
Confidence            4556778888887777888888888 5888888888866666655

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.74  E-value=7.3e-08  Score=102.09  Aligned_cols=138  Identities=17%  Similarity=0.062  Sum_probs=116.1

Q ss_pred             hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhh
Q 009130          358 SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCY  436 (543)
Q Consensus       358 ~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~  436 (543)
                      ....+.....+..+++.++..+|.+++|.++||+||      ++++..+.++..++.+..+ .++...+.+..++.|++.
T Consensus       112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GR------k~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~  185 (521)
T KOG0255|consen  112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGR------KPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFG  185 (521)
T ss_pred             eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhccc------HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc
Confidence            346677788888999999999999999999999954      5888889988888876666 567778899999999999


Q ss_pred             hhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHH
Q 009130          437 GSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSL  516 (543)
Q Consensus       437 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i  516 (543)
                      ++.......++.|.+++++|+.+..+ ......++. +.+.+.+++..  +            ||+.+++.....++.++
T Consensus       186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~-~~~~~~a~~~~--~------------Wr~~~~~~~~~~~~~~~  249 (521)
T KOG0255|consen  186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGL-MLPAGAAYITR--D------------WRWLFWIISIPSGLFLL  249 (521)
T ss_pred             cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHH-HHHHHHHHHHh--h------------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 666666664 56667777766  2            99999998888877766


Q ss_pred             H
Q 009130          517 V  517 (543)
Q Consensus       517 ~  517 (543)
                      +
T Consensus       250 ~  250 (521)
T KOG0255|consen  250 L  250 (521)
T ss_pred             H
Confidence            6

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.70  E-value=2.6e-07  Score=93.73  Aligned_cols=131  Identities=19%  Similarity=0.216  Sum_probs=92.4

Q ss_pred             HHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcc--------hHHHHHHHHHhhhhhhhhhHHH
Q 009130          375 IWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPG--------NLFVGTMIVGVCYGSQWSLMPT  445 (543)
Q Consensus       375 i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~--------~~~~~~~l~G~~~g~~~~~~~~  445 (543)
                      +...++.++.|+++||+|||      +.+..+.++..++.++... ++..        .+++..++.|++.+...+..+.
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  119 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRK------KTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAAL  119 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhH------HHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHH
Confidence            34457889999999999654      6777788887777766653 3322        2566678889998888888899


Q ss_pred             HHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHH
Q 009130          446 ITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSL  516 (543)
Q Consensus       446 ~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i  516 (543)
                      ++.|.+++++|+...+....+..+|.. +++.+.+.+.+..+...    ....+|+..|++.+.+.+++..
T Consensus       120 ~~~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       120 YLAEYAPPGKRGFYGSFQQVGAPVGLL-LAALTVLLLSYLLGDDA----LLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HhhhcCCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHH----hhccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888874 67666555433211000    0012489888877665555433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.69  E-value=2.5e-07  Score=96.19  Aligned_cols=153  Identities=12%  Similarity=0.062  Sum_probs=123.7

Q ss_pred             chHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcchHHH-H
Q 009130          351 NIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPGNLFV-G  428 (543)
Q Consensus       351 ~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~-~  428 (543)
                      ..+.+.++++.+..+.+++.++......+..++.+.+.||+|.|      .+.+.+.++..+++++..+ .+.+.+++ .
T Consensus        68 ~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R------~v~i~G~~v~~~g~~lssF~~~i~~l~lt~  141 (509)
T KOG2504|consen   68 LFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCR------TVMIAGGLVAALGLLLSSFATSLWQLYLTF  141 (509)
T ss_pred             hHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCch------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34556667788888899999999999999999999999999654      7888899888888887663 44444443 4


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHH
Q 009130          429 TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA  508 (543)
Q Consensus       429 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~  508 (543)
                      -++.|+|.+..+.....++...|. ++|+.+.|+...+..+|.+++ |.+..++.+..|            |+..+++.+
T Consensus       142 gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~~G------------~r~~~l~~~  207 (509)
T KOG2504|consen  142 GVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVF-PPLLKYLLSKYG------------WRGALLIFG  207 (509)
T ss_pred             HHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeH-HHHHHHHHHHhC------------cHHHHHHHH
Confidence            667788988888777777776665 899999999999999999765 458888999988            999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 009130          509 FVAFFGSLVAFLLFL  523 (543)
Q Consensus       509 ~~~~~~~i~~~~~~~  523 (543)
                      .+.+-.++....+++
T Consensus       208 ~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  208 GISLNVLVAGALLRP  222 (509)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            888777777666655

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.67  E-value=3.1e-07  Score=93.48  Aligned_cols=170  Identities=11%  Similarity=-0.022  Sum_probs=104.8

Q ss_pred             HHHHhhhchhhhhhhchHHHHHhhCCCchhhHHH--HHHHHHHHhhhcccc-ccchhhhhhhcCCCchHHHHHHHHHHHH
Q 009130          336 IATLCGMGSGIATMNNIAQVGESLHYSTTEINSL--ISLWSIWNFFGRFGA-GYGSDVFLHKLGWARPIFMVITLVAMSI  412 (543)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~--~~~~~i~~~ig~~~~-G~lsD~~~~~~~~~r~~~~~~~~~~~~i  412 (543)
                      ..++............+|.++++.|+|.++.+.+  .++..+...+..++. ++.+||.|||+     ..+....++...
T Consensus         8 ~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~-----~~i~~~~~~~~~   82 (390)
T TIGR02718         8 LLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR-----SWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch-----hHHHHHHHHHHH
Confidence            3344333333445678899999999999999997  456677777766666 55788887642     222222222221


Q ss_pred             HHHHHh---hc-C-cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          413 GHIAIA---SG-F-PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       413 ~~~~~~---~~-~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      +...+.   .. + ..+......+..++....-+..-.+..|..++++++...+....+..+|. ++++...+++.+..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~-~~g~~~~~~l~~~~g  161 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGF-FGGGAGTLVLFGKFG  161 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence            122221   11 1 11222223333344444444445566777777777777777777777777 477777888888887


Q ss_pred             CCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          488 SGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       488 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                                  |+..|++.+++.++..+..+++.+
T Consensus       162 ------------w~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       162 ------------QRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHcCC
Confidence                        999999999888777666555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.56  E-value=7.1e-07  Score=92.21  Aligned_cols=181  Identities=10%  Similarity=0.020  Sum_probs=127.0

Q ss_pred             hhhHHHHHHHHHHHHHcCCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccccccc
Q 009130           10 NSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFL   88 (543)
Q Consensus        10 ~~~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~   88 (543)
                      +.|-....+...+....|..........+-.+++|++..|...+.....+.++ +.++.|++.||+|             
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g-------------  345 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFG-------------  345 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------
Confidence            33444334334434445555455555567788999999999866666666655 6778999999999             


Q ss_pred             CCch--HHHHHHHHHHHHHHHHHHH--H--HhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhH
Q 009130           89 RGPW--VVHFTGAILCFTGYFLVWA--S--VVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVG  161 (543)
Q Consensus        89 ~g~r--~~~~~g~~~~~~g~~~~~~--~--~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~g  161 (543)
                        .|  +++.+++++..+-.+...+  .  ..+ .++   -+.+.+..++.|+..|...+.+-++.++..| +|.+..+|
T Consensus       346 --~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g-~~~---~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFg  419 (477)
T PF11700_consen  346 --PKTKRTLLISLILWIIIPLYGLFGFWPSFFG-LKS---PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFG  419 (477)
T ss_pred             --CchhHHHHHHHHHHHHHHHHHHHHhhhcccC-ccc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHH
Confidence              88  8888887777554444111  0  011 233   6889999999999999999999999999999 57899999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHHHHhhee
Q 009130          162 ILKGFVGLSGAVLTQVYKTVCNGNP-STYILVLALLPTLVSLLFMSHVR  209 (543)
Q Consensus       162 i~~~~~~lg~~i~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  209 (543)
                      ++....-.++.++|.+.+.+.+..+ -|+-+....+..+++++.+..++
T Consensus       420 ly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  420 LYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999988875432 44444444444445544444443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09669 putative symporter YagG; Provisional

Probab=98.55  E-value=1.5e-06  Score=90.07  Aligned_cols=168  Identities=10%  Similarity=0.070  Sum_probs=103.4

Q ss_pred             hhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHH-HhhcC--c--
Q 009130          349 MNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIA-IASGF--P--  422 (543)
Q Consensus       349 ~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~-~~~~~--~--  422 (543)
                      ..+++.+++ +.|+|+.+++.++++..+..++..++.|+++||...|.+ +|++.+..+.+...+...+ +..++  .  
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~G-rrrp~il~~~~~~~i~~~l~f~~p~~~~~~  107 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHG-QFRPYLLWFAIPFGVVCLLTFYTPDFGATG  107 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCC-CcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            445555554 579999999999999999999999999999999765532 2355666666665555543 32322  1  


Q ss_pred             --chHHHHHHHHHhhhhhhhhhHHHHHHhhc-CCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccch
Q 009130          423 --GNLFVGTMIVGVCYGSQWSLMPTITSEIF-GVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHC  499 (543)
Q Consensus       423 --~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~  499 (543)
                        ...++..++.+.++........++.+|.. ++++|.+..+.-.....+|.. +++.+...+....+..+     ...+
T Consensus       108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~-i~~~~~~pl~~~~~~~~-----~~~g  181 (444)
T PRK09669        108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGL-IVSVIALPLVDILGKGD-----EQKG  181 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----hhhh
Confidence              12233334556666666666667888887 457788877776666666553 33333333333322100     0124


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          500 FMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       500 ~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      |+..+.+.+++..+..+++++..+
T Consensus       182 ~~~~~~i~~ii~~v~~~~~~~~~~  205 (444)
T PRK09669        182 YFYAMMVMGLLGVVLFFCCFFMTK  205 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeE
Confidence            777777777766666555554433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.54  E-value=4.4e-05  Score=75.90  Aligned_cols=105  Identities=12%  Similarity=0.009  Sum_probs=68.8

Q ss_pred             chhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----hcCcchHHHHHHHHHhhhhh
Q 009130          363 TTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA----SGFPGNLFVGTMIVGVCYGS  438 (543)
Q Consensus       363 ~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~l~G~~~g~  438 (543)
                      ..+..+....+.++..++|--.-.+  |+      ++.+.+.+..++-.+.+++-+    .++.+..++.++..|+..|.
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri------r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa  351 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI------RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA  351 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh------hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence            3456677778898888888654332  22      233444333333222222211    23445555667777999999


Q ss_pred             hhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          439 QWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      .+......+.|..++++|--+.|...++-..|-. ++.
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~-lAg  388 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGIL-LAG  388 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHH-HHH
Confidence            9988888889989999999999999888877763 443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.52  E-value=2.9e-07  Score=91.80  Aligned_cols=176  Identities=17%  Similarity=0.224  Sum_probs=100.3

Q ss_pred             hcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHH
Q 009130          326 MCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMV  404 (543)
Q Consensus       326 ~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~  404 (543)
                      .||+.+|.+...+++..+..-....+.+.++++ .|+|.++.|.+++...+...+.+++.|.++||++.|+    ..+..
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK----~Ll~~   79 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKK----HLLWF   79 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCS----HHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhH----HHHHH
Confidence            367788888887777766655667777888876 7999999999999999999999999999999998652    12223


Q ss_pred             HHHHHHHHHH-HHHhh-cC-cchHHHHHHH----HHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhh
Q 009130          405 ITLVAMSIGH-IAIAS-GF-PGNLFVGTMI----VGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVR  477 (543)
Q Consensus       405 ~~~~~~~i~~-~~~~~-~~-~~~~~~~~~l----~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~  477 (543)
                      +..+....+. ..... +- ....++..++    +++++.+..+..=+++.+. . ++.+--+|=.-+-+.+|-. ++..
T Consensus        80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~-s-r~~~feYG~~R~wGSig~a-i~s~  156 (412)
T PF01306_consen   80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERV-S-RRNGFEYGRARMWGSIGFA-IASL  156 (412)
T ss_dssp             HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHH-H-HHHSS-HHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH-H-HHhcCCcchHHHHhhHHHH-HHHH
Confidence            2332222222 21111 10 0112222333    3333444334333333322 1 2334455555555556553 5556


Q ss_pred             hhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          478 IIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       478 l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      +.|.+.+..             .+..||+..+..++..++.+..
T Consensus       157 ~~G~L~~i~-------------p~~~fwi~s~~~~il~lll~~~  187 (412)
T PF01306_consen  157 LAGILFNIN-------------PNIIFWIASAAAIILLLLLLLL  187 (412)
T ss_dssp             HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HhheeeeeC-------------ccHHHHHHHHHHHHHHHHHHHc
Confidence            788888754             4467776655444444443333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.50  E-value=3.1e-06  Score=82.34  Aligned_cols=166  Identities=13%  Similarity=0.034  Sum_probs=127.7

Q ss_pred             hchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----hcCcchH
Q 009130          350 NNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA----SGFPGNL  425 (543)
Q Consensus       350 ~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~~  425 (543)
                      ..+|.+.+..+.+..++++....+..+..+..+..|++.+|+++|      ..+..++.++++++.++.    ..+...+
T Consensus        34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk------~gi~lgL~l~avg~~lF~pAa~~~~y~~F  107 (422)
T COG0738          34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYK------AGIVLGLLLYAVGAALFWPAASSKSYGFF  107 (422)
T ss_pred             hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhH------HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence            335667677899999999999999999999999999999999765      678889999999998875    2344556


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhc---cCCCCc----cccccc
Q 009130          426 FVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRV---ASGEDH----TCYGTH  498 (543)
Q Consensus       426 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~---g~~~~~----~~~~~~  498 (543)
                      .++.++.+.|.+..-+..+.++..+.+++......++....+.+|. +++|++++.+.+..   +-.++.    +.....
T Consensus       108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa-~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~  186 (422)
T COG0738         108 LVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGA-ILGPLLGSSLILSGVALTMSAAQILAIKGADAS  186 (422)
T ss_pred             HHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHH-HHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHH
Confidence            7778888999999888899999999999888889999999999998 48999998887731   000000    011123


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          499 CFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       499 ~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .++.+|..++...++..+.....+
T Consensus       187 ~v~~pYl~~~~~lvll~v~~~~~k  210 (422)
T COG0738         187 SVQFPYLILAGLLVLLAVLILLSK  210 (422)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcc
Confidence            477788888777666666544443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.47  E-value=2.5e-06  Score=89.21  Aligned_cols=170  Identities=9%  Similarity=0.097  Sum_probs=104.9

Q ss_pred             hhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcC--c
Q 009130          347 ATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGF--P  422 (543)
Q Consensus       347 ~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~--~  422 (543)
                      .+..+++.|+++ .|+++..++.++.+..+..++..++.|+++||...|.+ +|++.+..+.+..++++.++. .++  .
T Consensus        24 ~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~G-rrrp~il~g~i~~~i~~~llf~~p~~~~  102 (473)
T PRK10429         24 IVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWG-KFKPWILIGTLANSVVLFLLFSAHLFEG  102 (473)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCC-CcchhHhhhhHHHHHHHHHHHcCCCCCc
Confidence            344556666665 59999999999999999999999999999997643322 235667777777666654443 221  1


Q ss_pred             c----hHHHHHHHHHhhhhhhhhhHHHHHHhhc-CCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcccccc
Q 009130          423 G----NLFVGTMIVGVCYGSQWSLMPTITSEIF-GVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGT  497 (543)
Q Consensus       423 ~----~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~  497 (543)
                      .    .+.+..++.++++........++.+|+. ++++|.+..+.......+|+.+. +.+...+.+..|..+     ..
T Consensus       103 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~-~~~~~~~~~~~g~~~-----~~  176 (473)
T PRK10429        103 TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT-AGFTLPFVNYVGGGD-----RG  176 (473)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCc-----hh
Confidence            1    1223334556677766677778889988 57889988888666556655322 222222223222100     01


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          498 HCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       498 ~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      .+|+....+.+++.+++.+++++..+
T Consensus       177 ~g~~~~~~i~~~~~~~~~~~~~~~~~  202 (473)
T PRK10429        177 FGFQMFTLVLIAFFIVSTIITLRNVH  202 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCce
Confidence            13666666666665555555444333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.46  E-value=1.1e-06  Score=86.05  Aligned_cols=150  Identities=7%  Similarity=-0.044  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHHHHHcCCccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCC
Q 009130           12 KWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRG   90 (543)
Q Consensus        12 ~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g   90 (543)
                      +-.+.++...+....|.....+.-...-.+++|++..++.++.....+.+. ++++.|+|.||+|               
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg---------------  316 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG---------------  316 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------
Confidence            333344444444445554434333345566999999999977777776665 7889999999999               


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhh
Q 009130           91 PWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGL  169 (543)
Q Consensus        91 ~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~l  169 (543)
                      .|+++.++.++..+..+.     .-+...   -..+.++.++.|...|.....+-++.++..| +|-+..+|++....-.
T Consensus       317 ~k~vl~~~lvi~~~~~~~-----~~~~~~---~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra  388 (438)
T COG2270         317 SKPVLMIGLVILSIAALY-----LIFLEG---ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA  388 (438)
T ss_pred             CceeehHHHHHHHHHHHH-----HHHccc---cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH
Confidence            999999999988877777     333343   3667888999999999999999999999999 5779999999999999


Q ss_pred             hHHHHHHHHHHhcCC
Q 009130          170 SGAVLTQVYKTVCNG  184 (543)
Q Consensus       170 g~~i~~~l~~~l~~~  184 (543)
                      ++.++|.+.+.+.+.
T Consensus       389 ~S~~gp~lv~v~t~i  403 (438)
T COG2270         389 ASFLGPFLVAVITQI  403 (438)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999888877643

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.45  E-value=8.5e-07  Score=91.46  Aligned_cols=169  Identities=15%  Similarity=0.174  Sum_probs=117.9

Q ss_pred             hhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCc-----
Q 009130          349 MNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFP-----  422 (543)
Q Consensus       349 ~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~-----  422 (543)
                      ..+++.++++ .|+++...+.+..+..+.+++..++.|.++||...|.+ +|++.+..+.+..++++.++....|     
T Consensus        21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~p~~~~~   99 (428)
T PF13347_consen   21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWG-RRRPWILIGAILLALSFFLLFSPPPAGLSF   99 (428)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccccc-ccceEeehhhHHHHHHHHHhhccccchhhh
Confidence            3355555555 59999999999999999999999999999996543332 3456677787777777766553211     


Q ss_pred             ----chHHHHHHHHHhhhhhhhhhHHHHHHhhcCC-cchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcccccc
Q 009130          423 ----GNLFVGTMIVGVCYGSQWSLMPTITSEIFGV-RHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGT  497 (543)
Q Consensus       423 ----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~  497 (543)
                          .+..+..+++.+++........++.+|+.++ ++|.+..+.-.....+|.. +...+.+.+.+..+..+.     .
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~-l~~~~~~~l~~~~g~~~~-----~  173 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSL-LASFLAPILVSWFGGGDT-----S  173 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHH-HHHHHhhhhhhhhccCcc-----c
Confidence                1134445555777777777777889999874 6889888888777777773 344456666655553111     0


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          498 HCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       498 ~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .+|+...++.+++.+++.++..+..+|
T Consensus       174 ~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  174 NGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            258888888888888887777776666

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.43  E-value=2e-06  Score=84.76  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=85.5

Q ss_pred             CCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh----cCc----chHHHHHHHH
Q 009130          361 YSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS----GFP----GNLFVGTMIV  432 (543)
Q Consensus       361 ~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~----~~~----~~~~~~~~l~  432 (543)
                      +++...+.......++.++|++++|++.||+|||      .++...+++++++.++...    +++    .++....+++
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK------~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~L  154 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK------KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLL  154 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch------hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHh
Confidence            6666777888899999999999999999999655      6888888888888775541    222    2466678899


Q ss_pred             HhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhh
Q 009130          433 GVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGS  471 (543)
Q Consensus       433 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~  471 (543)
                      |+|.|+=+|+..++++|....+.||+-.+.+...+..|.
T Consensus       155 GiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  155 GIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            999999999999999999999999998888766666654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.43  E-value=2e-06  Score=87.02  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             HhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 009130          339 LCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA  418 (543)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~  418 (543)
                      ++.....-.+..+++.++++.|+|.+|.+.+.++..+..+++.+++|.++||..++     ++.+.+..++..+.+....
T Consensus        12 f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~-----~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen   12 FLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSA-----KRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH-----HHHHHHHHHHHHHHHHHHH
Confidence            33333333456678899999999999999999999999999999999999998643     3455555555555444333


Q ss_pred             -hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcC
Q 009130          419 -SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFG  452 (543)
Q Consensus       419 -~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~  452 (543)
                       ..+.+.+.+..++..+.+.+..+...++..+...
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence             3455556666667777777777777777777665

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.41  E-value=3e-06  Score=85.72  Aligned_cols=188  Identities=11%  Similarity=0.060  Sum_probs=120.0

Q ss_pred             HHHHHHHHHhhhchhhhhhhchHHHHHh--hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHH
Q 009130          331 FWFLCIATLCGMGSGIATMNNIAQVGES--LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLV  408 (543)
Q Consensus       331 f~~~~l~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~  408 (543)
                      .|...+..++.......+....-+|.++  .+-+.+.-|+..+...++.+++.+++|+.+.|.++-     ++.++.+.+
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~-----k~Pli~s~i  110 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSV-----KKPLIVSFL  110 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCc-----ccCHHHHHH
Confidence            4455555554433333333333345555  677888999999999999999999999999998631     345667888


Q ss_pred             HHHHHHHHHh----hc--CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          409 AMSIGHIAIA----SG--FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       409 ~~~i~~~~~~----~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      +++++.++..    .+  ..+.+.++.++.|+|.|. .+..-.++++.--.++|.++.+....+..+|. ++||.+... 
T Consensus       111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~-ilGp~~q~~-  187 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGI-ILGPTIQLA-  187 (488)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHH-HHhHHHHHH-
Confidence            8888877662    12  234567788899998765 45666788887767888888877766555554 355533222 


Q ss_pred             hhhccCCCCccc--cccchhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 009130          483 YDRVASGEDHTC--YGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTR  526 (543)
Q Consensus       483 ~~~~g~~~~~~~--~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  526 (543)
                      +.-.+.++-...  .--+-|..+-|++++++++.+++..+..+|..
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~  233 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY  233 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence            221121110000  11124778888999988888888777665543

>PRK11462 putative transporter; Provisional

Probab=98.40  E-value=7e-06  Score=85.33  Aligned_cols=168  Identities=8%  Similarity=0.016  Sum_probs=108.3

Q ss_pred             hhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcC--cc-
Q 009130          349 MNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGF--PG-  423 (543)
Q Consensus       349 ~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~--~~-  423 (543)
                      ..++..++++ .|+++..++.++.+.-+.+++.-++.|.++||...|.+ +|++.+.++.+...++++++. .+.  .. 
T Consensus        29 ~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~G-r~rp~il~g~i~~~i~~~llf~~p~~s~~~  107 (460)
T PRK11462         29 MLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWG-KFRPWVLFGALPFGIVCVLAYSTPDLSMNG  107 (460)
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCC-CcchhHhHHHHHHHHHHHHHHhCCCCCcch
Confidence            3455555555 69999999999999999999999999999999765543 345666667666666655443 221  11 


Q ss_pred             ---hHHHHHHHHHhhhhhhhhhHHHHHHhhcC-CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccch
Q 009130          424 ---NLFVGTMIVGVCYGSQWSLMPTITSEIFG-VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHC  499 (543)
Q Consensus       424 ---~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~  499 (543)
                         .+.+..++..+++........++.+|+.+ +++|.+..+.-..+..+|.. +++.+...+.+..|+.+     ...+
T Consensus       108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~-~~~~~~~plv~~~g~~~-----~~~g  181 (460)
T PRK11462        108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM-LSTVLMMPLVNLIGGDN-----KPLG  181 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc-----hhhh
Confidence               13333445567777777777788888876 57899999988877777763 44444433444433111     0124


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          500 FMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       500 ~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      |.....+.+++.+++..+++...+
T Consensus       182 ~~~~~~i~~ii~~i~~~i~~~~~k  205 (460)
T PRK11462        182 FQGGIAVLSVVAFMMLAFCFFTTK  205 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcce
Confidence            776666666655555544444333

>TIGR01272 gluP glucose/galactose transporter

Probab=98.33  E-value=4.2e-06  Score=82.09  Aligned_cols=122  Identities=10%  Similarity=0.077  Sum_probs=92.1

Q ss_pred             hcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 009130           42 TQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRP  120 (543)
Q Consensus        42 ~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~  120 (543)
                      ++|+++.+.+...+.+..+.. ..+..+++.||+|               +|+++.++.++..++.++     ....++ 
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g---------------~~~~l~~~~~l~~~~~~l-----~~~~~~-  230 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMIS---------------QGRYLAFNAFLAVLLSIG-----AALTHG-  230 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------HHHHHHHHHHHHHHHHHH-----HHHcCC-
Confidence            379999999966666666655 6778999999998               999998888888777755     222333 


Q ss_pred             ChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCchh
Q 009130          121 VPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPST  188 (543)
Q Consensus       121 ~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~  188 (543)
                        .... ..-++.|++.+..+|...+...+.+|++.+.+.++. ....+|+++.|++.+.+.+..+-+
T Consensus       231 --~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~  294 (310)
T TIGR01272       231 --YVAM-WFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQ  294 (310)
T ss_pred             --HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccch
Confidence              2222 244478899999999999999999998777788876 456689999999999887654433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.32  E-value=1.4e-05  Score=76.68  Aligned_cols=153  Identities=15%  Similarity=0.130  Sum_probs=120.5

Q ss_pred             hchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHH
Q 009130          350 NNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGT  429 (543)
Q Consensus       350 ~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  429 (543)
                      ..++.+-++.|.|.+.++.+.++..++..+..++..++..|++.+      ..+..++++.+++..+=...+...++...
T Consensus        33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~e------r~l~~~Llli~~G~~iR~~~~~~~L~~gt  106 (395)
T COG2807          33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEE------RSLFLALLLIAAGILIRSLGGLPLLFLGT  106 (395)
T ss_pred             hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH------HHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            345556677899999999999999999999999999999999653      56777777777777654444566788889


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHH
Q 009130          430 MIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAF  509 (543)
Q Consensus       430 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~  509 (543)
                      .+.|.+.+......|..+.+.|| |+.+...|++.+...+++. +++.+.-.+.+..+           +|+.+...-+.
T Consensus       107 ~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aa-Laa~lavpla~~~~-----------gW~~aL~~WAl  173 (395)
T COG2807         107 LLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAA-LAAALAVPLAQHSG-----------GWRGALGFWAL  173 (395)
T ss_pred             HHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHH-HHhhhhhHHHHhhc-----------cHHHHHHHHHH
Confidence            99999999999999999999998 7888888998877777764 55545555555543           39999888888


Q ss_pred             HHHHHHHHHHHH
Q 009130          510 VAFFGSLVAFLL  521 (543)
Q Consensus       510 ~~~~~~i~~~~~  521 (543)
                      ..++++++.+.-
T Consensus       174 ~allAl~~WlPq  185 (395)
T COG2807         174 LALLALLIWLPQ  185 (395)
T ss_pred             HHHHHHHHHhhh
Confidence            888877765544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.28  E-value=1.3e-05  Score=74.04  Aligned_cols=151  Identities=7%  Similarity=-0.042  Sum_probs=105.8

Q ss_pred             chhhHHHHHHHHHHHHHcCCccccccccHHHHhhcCCChhhHH-HHHHHhhhcccccchhhHhhhhcccccccccccccc
Q 009130            9 TNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLE-RVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRF   87 (543)
Q Consensus         9 ~~~~w~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~-~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~   87 (543)
                      ++.-|++.+.|....+++-..+..+  ....+|+||+|+...+ ..+....+....+++.|.+.||+|            
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg--~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G------------  328 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLG--PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYG------------  328 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhh--HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhc------------
Confidence            3445777777766555543333332  2457899999999999 667777777788999999999998            


Q ss_pred             cCCchHHHHHHHHHHHHH-HHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHH
Q 009130           88 LRGPWVVHFTGAILCFTG-YFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKG  165 (543)
Q Consensus        88 ~~g~r~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~  165 (543)
                         ++...+.+..+.++. -..+     .+.     ++.=.+...+.|+...+....-...++...| ++.|++.|...+
T Consensus       329 ---~n~~wv~~a~~~tl~~H~~l-----~Ft-----~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qs  395 (459)
T KOG4686|consen  329 ---FNLWWVASACILTLLGHSGL-----FFT-----FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQS  395 (459)
T ss_pred             ---ceehhHHHHHHHHHHHhhhH-----Hhh-----hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHH
Confidence               777766665554443 3331     111     1222345566777766654445566777889 579999999999


Q ss_pred             hhhhhHHHHHHHHHHhcCCCc
Q 009130          166 FVGLSGAVLTQVYKTVCNGNP  186 (543)
Q Consensus       166 ~~~lg~~i~~~l~~~l~~~~~  186 (543)
                      ..++|-++.|.+++.+.+.+.
T Consensus       396 IqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  396 IQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHhhhhhHHhhhhheeecCCC
Confidence            999999999999999987654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.26  E-value=3.8e-05  Score=74.37  Aligned_cols=155  Identities=14%  Similarity=0.071  Sum_probs=111.0

Q ss_pred             HHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHh
Q 009130          355 VGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGV  434 (543)
Q Consensus       355 ~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~  434 (543)
                      .++++|++..+.+.++......+.+...+.|.++||+|||      +.++...++..++++.-..++...+++..++-|+
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk------~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGi  133 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK------KACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGI  133 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999765      5666677777777776667777888999999999


Q ss_pred             hhhhhhhhHHHH-HHhh----cCCcchhhHHHHHH-hhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHH
Q 009130          435 CYGSQWSLMPTI-TSEI----FGVRHMGTIFNTIS-IACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA  508 (543)
Q Consensus       435 ~~g~~~~~~~~~-~~~~----~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~  508 (543)
                      +....++.+-++ +.|+    +|++..+..++... ..+.+-. +.+..+...+.|..+.          +...+|....
T Consensus       134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vA-I~aGv~a~~l~~~~~~----------g~vaPF~~a~  202 (354)
T PF05631_consen  134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVA-IGAGVVANVLADWFGF----------GPVAPFDAAI  202 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHH-HHHhHHHHHHHHHhCC----------CCcchHHHHH
Confidence            999988888764 5554    33333445555444 3344443 3444455566666552          1357888888


Q ss_pred             HHHHHHHHHHHHHhhcch
Q 009130          509 FVAFFGSLVAFLLFLRTR  526 (543)
Q Consensus       509 ~~~~~~~i~~~~~~~~~~  526 (543)
                      .+..++.++....+.|+.
T Consensus       203 ~~l~~~~~~I~~~W~ENy  220 (354)
T PF05631_consen  203 VLLAVAAVLILKTWPENY  220 (354)
T ss_pred             HHHHHHHHHHHhcccccC
Confidence            888888777666666543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.23  E-value=0.00028  Score=75.79  Aligned_cols=157  Identities=10%  Similarity=0.040  Sum_probs=114.1

Q ss_pred             cccHHHHhhcCCChhhHH-HHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHH
Q 009130           34 IYSSTLKSTQNYDQSTLE-RVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWAS  112 (543)
Q Consensus        34 ~~~~~l~~~~~~s~~~~~-~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~  112 (543)
                      ++..++.+.+|+++++.. ....+..+.+...+++|.++|++              +|+++++.++.++..+|..++++.
T Consensus         9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~--------------lG~~~tIl~~~ii~~lG~~llai~   74 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW--------------LGKFKTILYLSIVYVVGHALLSFG   74 (654)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHhc
Confidence            455677888999999888 66666667777899999999996              589999999999999999885432


Q ss_pred             HhccCCC--CChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CC---CcchhHHHHHhhhhhHHHHHHHHHHhcCC--
Q 009130          113 VVGLLPR--PVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HY---SGTIVGILKGFVGLSGAVLTQVYKTVCNG--  184 (543)
Q Consensus       113 ~~~~~~~--~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~---rg~~~gi~~~~~~lg~~i~~~l~~~l~~~--  184 (543)
                        +....  .......+++-.+..+|.|..-+...+...|-|+ ++   |-....+...+.++|+.+++++..++-+.  
T Consensus        75 --a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~  152 (654)
T TIGR00926        75 --AIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVG  152 (654)
T ss_pred             --cCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence              11110  0012234556667778999998988899999995 32   56678888888899999998888877522  


Q ss_pred             -----CchhHHHHHHHHHHHHHHHHHh
Q 009130          185 -----NPSTYILVLALLPTLVSLLFMS  206 (543)
Q Consensus       185 -----~~~~~~~~~~~~~~~~~~~~~~  206 (543)
                           ..|...+.+..+..+++++...
T Consensus       153 ~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       153 CFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             ccccCcchHHHHHHHHHHHHHHHHHHH
Confidence                 2466666666666666655443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.23  E-value=3.7e-06  Score=84.48  Aligned_cols=181  Identities=13%  Similarity=0.064  Sum_probs=123.6

Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhh-hhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIAT-MNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      +++.++....+++...+. +...++ .+++=-.++|.+-.+.--|......-.+.+..=++.+++..|+||      ..+
T Consensus       366 ~~~~s~~~llff~~av~m-G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGH------v~v  438 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVM-GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGH------VNV  438 (618)
T ss_pred             HHhcCCCEEehhHHHHHH-HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcc------cce
Confidence            456666544433332222 222222 222222346666555544544445555555666667777788754      467


Q ss_pred             HHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHH-hhhhhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTIS-IACPVGSYICSVRIIG  480 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~ig~~i~~~~l~g  480 (543)
                      +..++.+..+=++.+. ..++|.....-++-|+..+..+....++++...||+.+.++.|+.. ..-++|- -+|.+++|
T Consensus       439 ~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~-g~GslIGG  517 (618)
T KOG3762|consen  439 MYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGK-GLGSLIGG  517 (618)
T ss_pred             eeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCc-chhhhhhh
Confidence            7777777777666666 6788888888899999999999999999999999999999999984 4455665 36777889


Q ss_pred             hhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          481 RIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       481 ~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .+.++.+            -+..|..+++.+++.+++.+.+.+.
T Consensus       518 ~~v~~fg------------~~ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  518 FVVERFG------------ARTTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             hhheeeh------------hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999887            6788888888888877776665543

>TIGR00788 fbt folate/biopterin transporter

Probab=98.20  E-value=1.8e-05  Score=82.31  Aligned_cols=160  Identities=16%  Similarity=0.119  Sum_probs=103.3

Q ss_pred             hhhhhchHHHHH-hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHH-HHHHHHHhh-cCc
Q 009130          346 IATMNNIAQVGE-SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAM-SIGHIAIAS-GFP  422 (543)
Q Consensus       346 ~~~~~~~~~~~~-~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~-~i~~~~~~~-~~~  422 (543)
                      ......++++++ ++|+|+++.+.+.++..+.-.+-.+ +|.++||++.. +..|++.+.++.++. .+.+..+.. ++.
T Consensus        42 ~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~-G~rRr~~l~~~~~l~~~~~~~~l~~~~~~  119 (468)
T TIGR00788        42 GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLF-GYTKRWYLVLSGLLGSAILYGLLPGKVSS  119 (468)
T ss_pred             HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCC-CccchHHHHHHHHHHHHHHHHhcccccch
Confidence            334445555665 5799999999999999988877544 99999999521 113456666665555 233333332 222


Q ss_pred             ch-HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhh---HHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccc
Q 009130          423 GN-LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGT---IFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTH  498 (543)
Q Consensus       423 ~~-~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~---~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~  498 (543)
                      .. ..+..++.+++.+..-...-++..|..+ |++..   ..+.......+|. ++++.+.|.+.+..+           
T Consensus       120 ~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~-~vg~~l~G~l~~~~~-----------  186 (468)
T TIGR00788       120 AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGG-LISSLLGGPLLDKTL-----------  186 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHH-HHHHHHHHHHHHhcC-----------
Confidence            22 2335566777777777777788899888 44433   3333333334666 577788999988876           


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 009130          499 CFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       499 ~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                       |+..|++.+.+.++..+...++
T Consensus       187 -~~~~f~~~a~l~ll~~~~~~~~  208 (468)
T TIGR00788       187 -TRILFLITAALLLLQLFVSNLS  208 (468)
T ss_pred             -cchHHHHHHHHHHHHHHHHHhc
Confidence             8999999888777774443333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.19  E-value=1.4e-05  Score=81.46  Aligned_cols=137  Identities=16%  Similarity=0.228  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----hcCcchHHHHHHHHHhhhhhhhhh
Q 009130          367 NSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA----SGFPGNLFVGTMIVGVCYGSQWSL  442 (543)
Q Consensus       367 ~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~  442 (543)
                      +..++.+.+++++|.++.|+++||+|||      ..+.+..++..++.++..    .++...+.+..++.|+..|.....
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK------~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~  136 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRK------NALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGL  136 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcch------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHH
Confidence            4466789999999999999999999765      556666555554444332    345567888999999999999999


Q ss_pred             HHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          443 MPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       443 ~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                      .+.++.|..|.+.||....+..++..+|. +++..++  +-...|+.        ..|...+.+..+..++..+...+
T Consensus       137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~-ll~~~~~--l~~ilGt~--------~~W~~l~~~~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  137 VPMYLTEISPKNLRGALGTLLQIGVVIGI-LLGQVLG--LPSLLGTE--------DLWPYLLAFPLIPALLQLALLPF  203 (485)
T ss_pred             HHHHHhhcChhhhccHHHHHHHHHHHHHH-HHHHHHc--cHHhcCCC--------cchHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999888888887776 4553222  11222321        13777766666666666555433

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.17  E-value=3.1e-05  Score=72.30  Aligned_cols=128  Identities=20%  Similarity=0.149  Sum_probs=88.1

Q ss_pred             hhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh--
Q 009130          341 GMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA--  418 (543)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~--  418 (543)
                      ..+..+.+..+-|++-+.+|+|++|...+.....++..+| ++.|.+.|+++.      +.++.++.+...+++..+.  
T Consensus        14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp------~~~l~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen   14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGP------WVVLLIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777778888889999999999999999998876 788999999954      4678888888888876543  


Q ss_pred             h-c----Ccc-hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          419 S-G----FPG-NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       419 ~-~----~~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      . .    .+. .+.+..++.|.+.....+..-....+.|| ++||++.|+.-...++++.++..
T Consensus        87 ~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~  149 (250)
T PF06813_consen   87 VSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQ  149 (250)
T ss_pred             HhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHH
Confidence            1 1    111 22223333333333332333334457787 68999999998777777765554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.16  E-value=5.6e-05  Score=76.48  Aligned_cols=171  Identities=9%  Similarity=0.071  Sum_probs=116.2

Q ss_pred             hhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH-hhcC---
Q 009130          347 ATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAI-ASGF---  421 (543)
Q Consensus       347 ~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~-~~~~---  421 (543)
                      ....++..+++| .|+++..++.++.+.=+..++.-++.|.++||..+|.+ .|++.++.+.+..++.+.+. ..++   
T Consensus        30 ~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~G-rfRP~lL~g~ip~~i~~~l~F~~p~~~~  108 (467)
T COG2211          30 IVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWG-RFRPWLLWGAIPFAIVAVLLFITPDFSM  108 (467)
T ss_pred             HHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccc-cccHHHHHHhHHHHHHHHHHHcCCCccc
Confidence            345566667766 59999999999999999999999999999999875544 34566666666555554443 3332   


Q ss_pred             ---cchHHHHHHHHHhhhhhhhhhHHHHHHhhcC-CcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcccccc
Q 009130          422 ---PGNLFVGTMIVGVCYGSQWSLMPTITSEIFG-VRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGT  497 (543)
Q Consensus       422 ---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~  497 (543)
                         ....++.-++.++++........++.+++.+ +++|.+..+.-.....+|.. +...+.+.+....++.+.     .
T Consensus       109 ~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~-l~~~~~~plv~~~g~~~~-----~  182 (467)
T COG2211         109 TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGL-LVAVLFPPLVKLFGGGDK-----A  182 (467)
T ss_pred             CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCcc-----h
Confidence               1224455667788888887777788888764 47788888888777777764 333445555555443210     2


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          498 HCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       498 ~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .+|+....+.+++..+..+++++-.+|
T Consensus       183 ~g~~~~~~~~~vi~~i~~l~~~~~v~E  209 (467)
T COG2211         183 LGYQGTALVLGVIGVILLLFCFFNVKE  209 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            257777777776666666666665444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.15  E-value=3.7e-05  Score=75.61  Aligned_cols=131  Identities=16%  Similarity=0.133  Sum_probs=95.6

Q ss_pred             HHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-----hcC-------c
Q 009130          355 VGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-----SGF-------P  422 (543)
Q Consensus       355 ~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-----~~~-------~  422 (543)
                      +..|++.+..-.+.+.++..+... .|+.+|..||+.+.-.+++|.+.+..+.+.+..+..+..     ...       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            345788888888888888887764 799999999997623344566777777777666544322     111       1


Q ss_pred             ch-----HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 009130          423 GN-----LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVA  487 (543)
Q Consensus       423 ~~-----~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g  487 (543)
                      .+     ..++..++|+|.+..-+...+++.|..++|+|+++.+++.+...+|- +++..+.|.+.|...
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~-iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGI-IVSAIVFGRLLDPFS  153 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHH-HHHHHHHHHHccccC
Confidence            11     23345577888888888888999999999999999999977766665 577778888877653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09848 glucuronide transporter; Provisional

Probab=98.12  E-value=4e-05  Score=79.57  Aligned_cols=116  Identities=12%  Similarity=0.118  Sum_probs=72.9

Q ss_pred             hchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHH-HHHHHhhc---Ccc-
Q 009130          350 NNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSI-GHIAIASG---FPG-  423 (543)
Q Consensus       350 ~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i-~~~~~~~~---~~~-  423 (543)
                      .+++.|+++ .|+++.+++.+.++..+..++..++.|+++||.++|.+ .|++.+..+.+...+ +.+++..+   +.. 
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~G-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWG-KFRPFLLFGTAPLMIFSVLVFWVPTDWSHSS  107 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCc-CchHHHHHHHHHHHHHHHHHHhCcCCCCcch
Confidence            344456655 59999999999999999999999999999999976643 334444545443333 33333221   111 


Q ss_pred             -h--HHHHHHHHHhhhhhhhhhHHHHHHhhcCC-cchhhHHHHHHhh
Q 009130          424 -N--LFVGTMIVGVCYGSQWSLMPTITSEIFGV-RHMGTIFNTISIA  466 (543)
Q Consensus       424 -~--~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~  466 (543)
                       .  .++..++.+++++...+...++..++..+ ++|.+..+.-..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~  154 (448)
T PRK09848        108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIA  154 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHH
Confidence             1  23334556777777666666666666544 5677665554433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.11  E-value=8.9e-08  Score=99.51  Aligned_cols=139  Identities=22%  Similarity=0.267  Sum_probs=105.2

Q ss_pred             hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hc---CcchHHHHHHHHHhhhhhh
Q 009130          364 TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SG---FPGNLFVGTMIVGVCYGSQ  439 (543)
Q Consensus       364 ~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~---~~~~~~~~~~l~G~~~g~~  439 (543)
                      .+.++..+...++..+|.+++|+++||+|||      +.+..+.++..++.++.. .+   +...+.+..++.|++.|..
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRK------PALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence            3467888999999999999999999999665      677778888888777665 34   5677888899999999999


Q ss_pred             hhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHH
Q 009130          440 WSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVA  518 (543)
Q Consensus       440 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~  518 (543)
                      .+..+.++.|..|+++|+...++......+|.. ++..+ +.......        +...||..+.+..+..++..+..
T Consensus       120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~-~~~~~-~~~~~~~~--------~~~~Wr~~~~~~~~~~l~~~~~~  188 (451)
T PF00083_consen  120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGIL-LASLI-GYIVSYYS--------DNWGWRILLIFGAIPSLLVLLLR  188 (451)
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccc-cccccccc--------ccccccccccccccccccccccc
Confidence            999999999999999999999999888877763 54432 22222111        01238888777776665544443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.00  E-value=0.00013  Score=72.31  Aligned_cols=128  Identities=12%  Similarity=-0.017  Sum_probs=85.9

Q ss_pred             HHHHhhcCCChhhHH-HHHHHhhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 009130           37 STLKSTQNYDQSTLE-RVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVG  115 (543)
Q Consensus        37 ~~l~~~~~~s~~~~~-~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~  115 (543)
                      ++...+.|++..-.+ .....-..+...+++.|..+||.    ++++||      ||+-+..+..+.+++.++     .+
T Consensus        56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc----~sr~GR------RRPfI~~~s~~i~~~l~L-----ig  120 (498)
T KOG0637|consen   56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRC----TSRYGR------RRPFILAGSLLIAVSLFL-----IG  120 (498)
T ss_pred             cHHHHHcCCCcccccccccccccccceeccccccccccc----cccccc------ccchHHHhhHHHHHHHhh-----hh
Confidence            444557888888777 33344445556899999999996    466677      777778888888888887     44


Q ss_pred             cCCCC--------C------hHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcc-hhHHHHHhhhhhHHHHHHHHH
Q 009130          116 LLPRP--------V------PVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGT-IVGILKGFVGLSGAVLTQVYK  179 (543)
Q Consensus       116 ~~~~~--------~------~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~-~~gi~~~~~~lg~~i~~~l~~  179 (543)
                      ++.+.        .      ....+++.--+.=+....+..++-+.++|... +++-+ +.+......++|+.++-.+++
T Consensus       121 ~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  121 YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            43331        0      11122223333445666778888899999994 44444 899998899999888865554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.98  E-value=9.8e-05  Score=79.17  Aligned_cols=164  Identities=16%  Similarity=0.244  Sum_probs=118.5

Q ss_pred             hhhhchHHHH-HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcC-c--
Q 009130          347 ATMNNIAQVG-ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGF-P--  422 (543)
Q Consensus       347 ~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~-~--  422 (543)
                      ++...+..++ ..+|++.+++..++..+....-+..+++|+++|++-     +|.+.+.++.++..++..+++... +  
T Consensus         5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~l-----G~~~tIl~~~ii~~lG~~llai~a~~~~   79 (654)
T TIGR00926         5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWL-----GKFKTILYLSIVYVVGHALLSFGAIPSS   79 (654)
T ss_pred             ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhccCccc
Confidence            3344444444 447999999988888888888889999999999763     555788888888888887665321 1  


Q ss_pred             ------chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcc---hhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCcc
Q 009130          423 ------GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRH---MGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHT  493 (543)
Q Consensus       423 ------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~  493 (543)
                            ...++...+..+|.|+.-+...+...|.+++++   +-..+.+...+.++|+. +++++.+++.+..+      
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~------  152 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVG------  152 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc------
Confidence                  124556777788899988999999999998654   55677777788888884 77777887765432      


Q ss_pred             ccc-cchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          494 CYG-THCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       494 ~~~-~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      |++ ..+|..+|.+.+++++++.++.....
T Consensus       153 ~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       153 CFGCQDCYPLAFGVPAILMILALIVFMAGS  182 (654)
T ss_pred             ccccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            111 22588999999988888877755433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.00013  Score=66.90  Aligned_cols=98  Identities=11%  Similarity=0.027  Sum_probs=62.1

Q ss_pred             HHHhhcCCChhhHHHHHHHhhhcc-cccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Q 009130           38 TLKSTQNYDQSTLERVAVFKDMGG-SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGL  116 (543)
Q Consensus        38 ~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~  116 (543)
                      ++-+.++.-..|++.+..+..-.. .++.+.|-++||-|               ||+.    ++.+.+-+.+-|+  +-.
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqG---------------RKra----cvtycitYiLsCi--TKh  120 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQG---------------RKRA----CVTYCITYILSCI--TKH  120 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhc---------------cccc----eeeehHHHHHHHH--hhc
Confidence            444577888888884444433333 37888999999988               8874    3445555555333  233


Q ss_pred             CCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCCCcch
Q 009130          117 LPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTI  159 (543)
Q Consensus       117 ~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~  159 (543)
                      .+.   +..++++|++.|++.+..+..--+....-..+||+.-
T Consensus       121 Spq---YkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe  160 (454)
T KOG4332|consen  121 SPQ---YKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE  160 (454)
T ss_pred             CCc---eEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh
Confidence            444   7788999999999999887765443322222355543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.85  E-value=0.027  Score=57.96  Aligned_cols=131  Identities=8%  Similarity=-0.119  Sum_probs=86.1

Q ss_pred             HHHHhhcCCCh-----hhHHHHHHHhhhccc--ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHH
Q 009130           37 STLKSTQNYDQ-----STLERVAVFKDMGGS--AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLV  109 (543)
Q Consensus        37 ~~l~~~~~~s~-----~~~~~~~~~~~~~~~--~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~  109 (543)
                      -.++|.+.++.     ..+.++-+...+...  +.++.+++.+|++               |++.+-.-...+.+-.+++
T Consensus        27 R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~---------------~~~lf~~~~~~F~~~f~lF   91 (472)
T TIGR00769        27 RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILS---------------KEALFYTVISPFLGFFALF   91 (472)
T ss_pred             HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------HHHhHHHHHHHHHHHHHHH
Confidence            56777776643     345566555555443  3678899999998               8888877777777777776


Q ss_pred             HHHHhccCCCC--C---------------------hHHHHHHHHHHHhcCcchhhh-hHHHHHhhhcC-CCCcchhHHHH
Q 009130          110 WASVVGLLPRP--V---------------------PVPLMCLFIFTAAHAQNFFNT-GNIVTGVMNFG-HYSGTIVGILK  164 (543)
Q Consensus       110 ~~~~~~~~~~~--~---------------------~~~~~~~~r~l~G~g~g~~~~-~~~~~~~~~fp-~~rg~~~gi~~  164 (543)
                      +...-......  +                     ..|...++.+...+-...... .-...++|.+. +|-.+-.++..
T Consensus        92 ~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~  171 (472)
T TIGR00769        92 AFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFG  171 (472)
T ss_pred             HHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            55422211110  0                     023444455555554444443 56678899997 56667889999


Q ss_pred             HhhhhhHHHHHHHHHHhc
Q 009130          165 GFVGLSGAVLTQVYKTVC  182 (543)
Q Consensus       165 ~~~~lg~~i~~~l~~~l~  182 (543)
                      .+.++|..+++.+..++.
T Consensus       172 ~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       172 LGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998887764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.68  E-value=0.0028  Score=64.88  Aligned_cols=102  Identities=12%  Similarity=0.028  Sum_probs=59.0

Q ss_pred             hhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHH--HHHHHHHHHHh-h---------cCcchHHHHHHHH
Q 009130          365 EINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL--VAMSIGHIAIA-S---------GFPGNLFVGTMIV  432 (543)
Q Consensus       365 ~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~--~~~~i~~~~~~-~---------~~~~~~~~~~~l~  432 (543)
                      ..-..+..++++..+||.+..+. ..-.+|   .| .+...+.  ++.+..+++.. .         .+.+..++..+++
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~---~~-~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~  382 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKF-MWPDED---SR-WLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLF  382 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhee-EeeCCC---cc-chHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHH
Confidence            34556779999999999966543 111111   22 2222221  11222222221 1         1233456678888


Q ss_pred             HhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhh
Q 009130          433 GVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGS  471 (543)
Q Consensus       433 G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~  471 (543)
                      |+..|...+....+.++..+++++-.+-.++...-.+|-
T Consensus       383 gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl  421 (437)
T TIGR00939       383 GFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGL  421 (437)
T ss_pred             HHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999888888777888888888777666666655554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.66  E-value=0.0005  Score=70.72  Aligned_cols=157  Identities=19%  Similarity=0.162  Sum_probs=105.8

Q ss_pred             HHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hc----CcchHHH
Q 009130          353 AQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SG----FPGNLFV  427 (543)
Q Consensus       353 ~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~----~~~~~~~  427 (543)
                      +.+.+++|.++++.+.+.++..+-- .-+++.|.++|.+--+ +.+|++.+.++.++..++...++ .+    +.....+
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~-G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIF-GYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhccccccc-CCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            3444668999999888777776554 4678899999987421 11456777777777655544443 11    2233444


Q ss_pred             HHHHHHhhhhhhhhhHHHHHHhhcCC--cchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHH
Q 009130          428 GTMIVGVCYGSQWSLMPTITSEIFGV--RHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFM  505 (543)
Q Consensus       428 ~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~  505 (543)
                      ..++..+|....-...-+++.|....  +.+|...+.......+|+ +++..+.|.+.+..+            ++..|.
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~-lv~~~l~G~l~~~~~------------~~~~f~  158 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGS-LVGSLLSGPLLDSFG------------PQGVFL  158 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHH-HHHHHhhhhhhhcCC------------CeEEeh
Confidence            45556666666666666677776632  336777888888888888 477778889888776            778888


Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 009130          506 IMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       506 ~~~~~~~~~~i~~~~~~~~  524 (543)
                      +.+.+..+..+..+++..|
T Consensus       159 i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  159 ISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhh
Confidence            8887777777766666654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.65  E-value=0.00046  Score=66.76  Aligned_cols=137  Identities=17%  Similarity=0.050  Sum_probs=97.7

Q ss_pred             cccccHHHHhhcCCCh--hhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQ--STLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~--~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      .....+.+.++++.+.  .+.++......+... ..++.|.+.||+|               ||+.+..+.....++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g---------------~~~~~~~~~~~~~~~~~~   85 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYG---------------RRKVLIIGLLLFLLGTLL   85 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhcccccc---------------chHHHHHHHHHHHHHHHH
Confidence            3345566677776665  366666565565555 4578999999988               888888887765555444


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCC--CCcchhHHHHH-hhhhhHHHHHHHHHHhcCC-
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGH--YSGTIVGILKG-FVGLSGAVLTQVYKTVCNG-  184 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~--~rg~~~gi~~~-~~~lg~~i~~~l~~~l~~~-  184 (543)
                           ..+..+ ...+.+.+.|+++|++.+...+.....+.+++|+  +|+...+.... ...+|..+++.+...+... 
T Consensus        86 -----~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (338)
T COG0477          86 -----LALAPN-VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGAL  159 (338)
T ss_pred             -----HHhCcc-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 333333 1278889999999999999999999999999996  78988888888 4777777777555554322 


Q ss_pred             -CchhH
Q 009130          185 -NPSTY  189 (543)
Q Consensus       185 -~~~~~  189 (543)
                       ..|++
T Consensus       160 ~~~~~~  165 (338)
T COG0477         160 LWGWRA  165 (338)
T ss_pred             hcchHH
Confidence             34554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.64  E-value=0.0012  Score=63.71  Aligned_cols=141  Identities=11%  Similarity=0.031  Sum_probs=97.9

Q ss_pred             hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhh
Q 009130          359 LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYG  437 (543)
Q Consensus       359 ~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g  437 (543)
                      .|.+..+..++......+..+|...+|.++|++|||      +...++....++.-++-. .++..++++...+.|+|.|
T Consensus       108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr------~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g  181 (528)
T KOG0253|consen  108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRR------KGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG  181 (528)
T ss_pred             hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcc------hhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence            488888889999999999999999999999999876      334444444444433333 4566778888889999999


Q ss_pred             hhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHH
Q 009130          438 SQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLV  517 (543)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~  517 (543)
                      + .+...++-.|..|..++.+-.=+. ....+|.. +...+.=.+..+.|            |++-+........+.+.+
T Consensus       182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v-~ea~law~vm~~~g------------wr~~l~~~~~pl~~~a~f  246 (528)
T KOG0253|consen  182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQV-FEALLAWGVMSNFG------------WRYLLFTSSTPLMFAARF  246 (528)
T ss_pred             C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHH-HHHHHHHHHHHhhh------------HHHHHHHHHhHHHHHHHH
Confidence            8 777777778888888877644333 55666663 44444444445555            888777666555444444


Q ss_pred             HHH
Q 009130          518 AFL  520 (543)
Q Consensus       518 ~~~  520 (543)
                      ..+
T Consensus       247 ~~w  249 (528)
T KOG0253|consen  247 LVW  249 (528)
T ss_pred             Hhh
Confidence            443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.64  E-value=0.017  Score=58.53  Aligned_cols=80  Identities=13%  Similarity=0.234  Sum_probs=50.4

Q ss_pred             hhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC----------------Cccc-c--ccchh
Q 009130          440 WSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGE----------------DHTC-Y--GTHCF  500 (543)
Q Consensus       440 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~----------------~~~~-~--~~~~~  500 (543)
                      +....+.=+++.+|..-|+.+.+.|+..++|+. ....+.=++.|+....+                ...| .  |..|-
T Consensus       423 FVai~AFharISDP~IGGTYMTLLNTvSNLGGt-WP~~~vL~lVD~fT~~~C~~~~t~~~~c~~~~~k~~Ct~~~GG~C~  501 (544)
T PF13000_consen  423 FVAIMAFHARISDPAIGGTYMTLLNTVSNLGGT-WPRTFVLWLVDYFTVATCTVPGTNSFSCSSDAEKEQCTKAGGGTCV  501 (544)
T ss_pred             HHHHHHHHhhccCcccchHHHHHHHHHHhcCCC-chHHHHHHHhhhccccccCCCCCCCceeccHHHHHHHhhCCCCeEE
Confidence            444445556777888899999999999999986 66656666777653221                1124 2  33332


Q ss_pred             --HHHHHHHHHHHHHHHHHHHH
Q 009130          501 --MLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       501 --~~~f~~~~~~~~~~~i~~~~  520 (543)
                        +-.||+..++|++..++.++
T Consensus       502 i~rDGYYi~~~lCvviGi~~~~  523 (544)
T PF13000_consen  502 IIRDGYYITNILCVVIGIVLWF  523 (544)
T ss_pred             EEeccchhhhHHHHHHHHHHHH
Confidence              44567777766666555443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.55  E-value=0.031  Score=56.87  Aligned_cols=144  Identities=11%  Similarity=0.002  Sum_probs=86.5

Q ss_pred             HHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchH
Q 009130          322 LLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPI  401 (543)
Q Consensus       322 ~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~  401 (543)
                      ++.-++++.|..- +...+.+..-.++-.....|+...|+++...+..-+...+.++.|.++..++.+|+|.-      +
T Consensus       252 w~~Y~~q~vflas-~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlv------r  324 (432)
T PF06963_consen  252 WRTYFRQPVFLAS-FALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLV------R  324 (432)
T ss_pred             HHHHHhCHHHHHH-HHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------h
Confidence            4445556655433 33332223233445555677778899999999999999999999999999999999643      3


Q ss_pred             HHHHHHHHHHHHHH----HHh-hcCc-chHHHHHHHHHhhh--hhhh---hhHHHHHHhhcCCcchhhHHHHHHhhhhhh
Q 009130          402 FMVITLVAMSIGHI----AIA-SGFP-GNLFVGTMIVGVCY--GSQW---SLMPTITSEIFGVRHMGTIFNTISIACPVG  470 (543)
Q Consensus       402 ~~~~~~~~~~i~~~----~~~-~~~~-~~~~~~~~l~G~~~--g~~~---~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig  470 (543)
                      .-.++......++.    .+. ..++ .......++.|+..  -+.+   -...-++-|..|+++||...|+-+..+.+.
T Consensus       325 ~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf  404 (432)
T PF06963_consen  325 AGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLF  404 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHH
Confidence            34444444333322    222 2222 12222222223211  1111   233346678889999999999998877777


Q ss_pred             hh
Q 009130          471 SY  472 (543)
Q Consensus       471 ~~  472 (543)
                      ..
T Consensus       405 ~l  406 (432)
T PF06963_consen  405 EL  406 (432)
T ss_pred             HH
Confidence            63

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.49  E-value=0.00034  Score=52.39  Aligned_cols=59  Identities=14%  Similarity=0.058  Sum_probs=49.8

Q ss_pred             HHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhh
Q 009130          336 IATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHK  394 (543)
Q Consensus       336 l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~  394 (543)
                      ..+++..+..-.+..++|.+.++.|+|+.+.+.+.++..+...++.+++|.++||++++
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            33444445555677888999999999999999999999999999999999999999754

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.30  E-value=0.0065  Score=60.52  Aligned_cols=112  Identities=16%  Similarity=0.073  Sum_probs=72.5

Q ss_pred             hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh--hcC--cchHH-----HHH
Q 009130          359 LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA--SGF--PGNLF-----VGT  429 (543)
Q Consensus       359 ~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~--~~~--~~~~~-----~~~  429 (543)
                      +| +.+.+.++..++.+..+.-.+.+-|+.||+|-|      ....++....+++..+=.  ...  +..+.     ...
T Consensus        75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR------~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq  147 (480)
T KOG2563|consen   75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLR------TALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQ  147 (480)
T ss_pred             hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchH------HHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhH
Confidence            36 666677777899999999999999999999765      677788888888876522  211  12222     333


Q ss_pred             HHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhh
Q 009130          430 MIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRI  478 (543)
Q Consensus       430 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l  478 (543)
                      .+.+...-......+=+..-.||+++|++|..+..+++.+|.. ++.++
T Consensus       148 ~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGva-vg~ll  195 (480)
T KOG2563|consen  148 SIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVA-VGFLL  195 (480)
T ss_pred             HHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHH-HHhhc
Confidence            3444433333322223445668999999998888777666653 44333

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.18  E-value=0.0047  Score=59.20  Aligned_cols=188  Identities=9%  Similarity=0.048  Sum_probs=99.9

Q ss_pred             HHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCC--chhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCc
Q 009130          322 LLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYS--TTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWAR  399 (543)
Q Consensus       322 ~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r  399 (543)
                      +.+..+||......+...+...+++-..++....-++..-+  ..-.|..=++..+.++++.+..|.+.-...|    .+
T Consensus       227 l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r----~g  302 (433)
T KOG3810|consen  227 LQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR----WG  302 (433)
T ss_pred             HHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch----hh
Confidence            34455677654444444555455554554444444444211  1112223345556666777777777554432    22


Q ss_pred             hHHHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhh
Q 009130          400 PIFMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRI  478 (543)
Q Consensus       400 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l  478 (543)
                      ..++.++.+..+...+.+. ..+.+..++.-+++..-+....++...-+++-...|..|..+|+-....-+-.    .++
T Consensus       303 ~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQ----sil  378 (433)
T KOG3810|consen  303 DLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQ----SIL  378 (433)
T ss_pred             HHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHH----Hhh
Confidence            3455555544444444454 45666677777777777776666777777777888889999988654433322    223


Q ss_pred             hhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHH
Q 009130          479 IGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVA  518 (543)
Q Consensus       479 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~  518 (543)
                      .-.+.|..|-.-+-..+ ..-|..=|.+.+++.+++..+.
T Consensus       379 T~iVvd~~g~~L~ir~Q-~~~Y~~Yf~v~~~i~~~~~~~~  417 (433)
T KOG3810|consen  379 TLIVVDDRGLGLDIRTQ-FVVYSSYFIVLGVIFLIGFGIE  417 (433)
T ss_pred             eEEEEcccccCCCccee-EEEEeehHHHHHHHHHHHHHHH
Confidence            33445544422211111 1112233566666666665553

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.18  E-value=0.0045  Score=63.68  Aligned_cols=131  Identities=14%  Similarity=0.190  Sum_probs=96.4

Q ss_pred             HHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHh--hhhhhhhhHHHHHHhhc
Q 009130          374 SIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGV--CYGSQWSLMPTITSEIF  451 (543)
Q Consensus       374 ~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~--~~g~~~~~~~~~~~~~~  451 (543)
                      ++...+..+..|.++|++|||      ..+....+...+..++..... +++++   +.++  +++..++...++++|..
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk------~~L~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadis  141 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRK------VVLLLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADIS  141 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhh------hhHHHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeecc
Confidence            677888999999999999765      566666666655554444322 22222   4443  34555667778899999


Q ss_pred             CCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 009130          452 GVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRR  527 (543)
Q Consensus       452 ~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~  527 (543)
                      ..++|...+|+++.....+. .++|.+.+.+.+..+            +-..|++..+..++..+...+..+|...
T Consensus       142 ~~~~R~~~~gll~~~~~~~~-~~~p~~~~~~~~~~~------------~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  142 SEEERSSSIGLLSGTFGAGL-VIGPALGGYLVKFLG------------IALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHhcC------------chHHHHHHHHHHHHHHHHHhhccccccC
Confidence            99999999999988777777 477888888888766            7888999998888888887777766543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.12  E-value=0.00078  Score=50.94  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             ccccccccHHHHhhcCCChhhHHHHHHHhhhcccc-cchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHH
Q 009130           29 TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGSA-GILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYF  107 (543)
Q Consensus        29 ~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~-~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~  107 (543)
                      .|.|+.+.|.+++|.++|.+|.+++.+...+|+.. .+...++.++..               +|+.+..+++..++.++
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~   72 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSR---------------PRRLLRAGLLLTVLSTA   72 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------HHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999985 446777788765               78889999999999888


Q ss_pred             HHHHHHhccCCC
Q 009130          108 LVWASVVGLLPR  119 (543)
Q Consensus       108 ~~~~~~~~~~~~  119 (543)
                      .     +++.++
T Consensus        73 ~-----ma~~~~   79 (85)
T PF06779_consen   73 A-----MALTHS   79 (85)
T ss_pred             H-----HHHHhc
Confidence            8     777666

Note that many members are hypothetical proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.06  E-value=0.012  Score=50.65  Aligned_cols=108  Identities=10%  Similarity=-0.059  Sum_probs=80.8

Q ss_pred             CchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHhhhhhhhh
Q 009130          362 STTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWS  441 (543)
Q Consensus       362 s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~  441 (543)
                      ++.......++......++.++.+.+.+++|.|      +.+.++.+..++-...+..++.+.++.+.++.|++.+..++
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K------~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~  108 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKLGPK------WSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWT  108 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhH
Confidence            333444455666777777888888888998654      77888877777655555556667788899999999999999


Q ss_pred             hHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          442 LMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       442 ~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      ....++.+...++++++..|+.......+. ++|.
T Consensus       109 aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~-i~G~  142 (156)
T PF05978_consen  109 AQGTYLTSYSTEETIGRNTGIFWAIFQSSL-IFGN  142 (156)
T ss_pred             hhhHHHHHcCCHHHHhhHHHHHHHHHHHHH-HHHH
Confidence            999999999888999999888766555554 3443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.99  E-value=0.0036  Score=53.95  Aligned_cols=101  Identities=8%  Similarity=-0.126  Sum_probs=79.9

Q ss_pred             hhhcccccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcC
Q 009130           57 KDMGGSAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHA  136 (543)
Q Consensus        57 ~~~~~~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g  136 (543)
                      +....+..++.+.+.+++|               +|+++++|.+..++-...      .+-++   .+.++...++.|+|
T Consensus        47 Y~~~~~s~l~~P~iv~~lg---------------~K~sm~lg~~~y~~y~~~------~~~~~---~~~l~~~s~l~G~~  102 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNKLG---------------PKWSMILGSLGYAIYIAS------FFYPN---SYTLYPASALLGFG  102 (156)
T ss_pred             HHHHHHHHHhHHHHHHHHh---------------hHHHHHHHHHHHHHHHHH------HHhhh---HHHHHHHHHHHhhh
Confidence            3333445677888999999               999999999988754444      23344   57888899999999


Q ss_pred             cchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHh
Q 009130          137 QNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTV  181 (543)
Q Consensus       137 ~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l  181 (543)
                      .+..++..-.++.++-. ++|++..++..+....+.++|+.+.-..
T Consensus       103 ~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  103 AALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999899998886 5799999999999998888887554443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.091  Score=51.35  Aligned_cols=169  Identities=9%  Similarity=-0.066  Sum_probs=86.2

Q ss_pred             hhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCc
Q 009130          320 MNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWAR  399 (543)
Q Consensus       320 ~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r  399 (543)
                      +-.+++++-|....++......-..+-+.-...+.-+.|.|++.++.+....+.--.+++.....|..+.+..+-...-|
T Consensus       256 k~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lk  335 (510)
T KOG3574|consen  256 KLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLK  335 (510)
T ss_pred             HHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHH
Confidence            34567777777665555444333333333333445567889998887776655444555555555544432110000001


Q ss_pred             hHHHHHHHHHHHHHHHHHh--hcC-----cchHHHHHH----HHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhh
Q 009130          400 PIFMVITLVAMSIGHIAIA--SGF-----PGNLFVGTM----IVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACP  468 (543)
Q Consensus       400 ~~~~~~~~~~~~i~~~~~~--~~~-----~~~~~~~~~----l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  468 (543)
                      ...+=+........++...  ...     +...++..+    +.+...-..+....+..+++.+|...|+.+.+.++..+
T Consensus       336 a~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsn  415 (510)
T KOG3574|consen  336 AVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSN  415 (510)
T ss_pred             hhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHH
Confidence            1111111111111111111  111     111222222    22222222233444567788889999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhccCC
Q 009130          469 VGSYICSVRIIGRIYDRVASG  489 (543)
Q Consensus       469 ig~~i~~~~l~g~l~~~~g~~  489 (543)
                      +|+. ....+..++.|..+.+
T Consensus       416 LGg~-wp~tv~l~l~D~ltv~  435 (510)
T KOG3574|consen  416 LGGN-WPGTVALWLADGLTVK  435 (510)
T ss_pred             hcCC-cHHHHHHHhcccCcee
Confidence            9986 5556788888876543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.84  E-value=0.056  Score=51.94  Aligned_cols=145  Identities=17%  Similarity=0.227  Sum_probs=94.9

Q ss_pred             hchHHHHHhhCCCc--hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcC--cch
Q 009130          350 NNIAQVGESLHYST--TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGF--PGN  424 (543)
Q Consensus       350 ~~~~~~~~~~g~s~--~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~--~~~  424 (543)
                      ...+.+..+.+.+.  ...+...+...+...++.++.|.++||.|||      ..+..+.....++.++.. ..+  ...
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (338)
T COG0477          23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR------KVLIIGLLLFLLGTLLLALAPNVGLAL   96 (338)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch------HHHHHHHHHHHHHHHHHHhCccchHHH
Confidence            34455555555554  4778888999999999999999999999654      344444433333323322 222  344


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcCC-cchhhHHHHHHh-hhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHH
Q 009130          425 LFVGTMIVGVCYGSQWSLMPTITSEIFGV-RHMGTIFNTISI-ACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFML  502 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~g~~~g~~~~-~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~  502 (543)
                      +.+.....|++.+...+...+++.|.+++ ++++...+.... ...++. +++|.+.+.+.+. .         ..+|+.
T Consensus        97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---------~~~~~~  165 (338)
T COG0477          97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGL-ALGPLLAGLLLGA-L---------LWGWRA  165 (338)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-H---------hcchHH
Confidence            55556567888888888888999999987 678888888877 455565 4666666666655 2         113777


Q ss_pred             HHHHHHHHH
Q 009130          503 SFMIMAFVA  511 (543)
Q Consensus       503 ~f~~~~~~~  511 (543)
                      .|.+.....
T Consensus       166 ~~~~~~~~~  174 (338)
T COG0477         166 AFLLAALLG  174 (338)
T ss_pred             HHHHHHHHH
Confidence            555554443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.83  E-value=0.47  Score=50.40  Aligned_cols=179  Identities=9%  Similarity=0.041  Sum_probs=108.3

Q ss_pred             chhhHHHHHHHHHHHHH-cCCcccc-ccccHHHHhhcCCChhhHH-HHHHHhhhcccccchhhHhhhhcccccccccccc
Q 009130            9 TNSKWIATVASIWIQCS-VGTTYTF-SIYSSTLKSTQNYDQSTLE-RVAVFKDMGGSAGILSGLLFSYVTLNHHHHQTRT   85 (543)
Q Consensus         9 ~~~~w~~~~~~~~~~~~-~g~~~~~-~~~~~~l~~~~~~s~~~~~-~~~~~~~~~~~~~~~~G~l~d~~g~~~~~~~~~~   85 (543)
                      ++.+|.........-.+ -...|.+ +.+..++.+++|.+..++. .++.+........+.+++++|-|-          
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~----------  101 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL----------  101 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh----------
Confidence            45566654433222222 2223333 3456788899998887666 444443333345678999999995          


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHHhcc---------------CCCCC--hHHHHHHHHHHHhcCcchhhhhHHHHH
Q 009130           86 RFLRGPWVVHFTGAILCFTGYFLVWASVVGL---------------LPRPV--PVPLMCLFIFTAAHAQNFFNTGNIVTG  148 (543)
Q Consensus        86 ~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~---------------~~~~~--~~~~~~~~r~l~G~g~g~~~~~~~~~~  148 (543)
                          ||-+++.++.++..+|.+++-+....-               ...+.  ....+....-+..+|.|..-+.....-
T Consensus       102 ----gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fG  177 (571)
T KOG1237|consen  102 ----GRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFG  177 (571)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhc
Confidence                799999999999888866654432111               01100  012334455567789999999888888


Q ss_pred             hhhcCC--C---C--cchhHHHHHhhhhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 009130          149 VMNFGH--Y---S--GTIVGILKGFVGLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVS  201 (543)
Q Consensus       149 ~~~fp~--~---r--g~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~  201 (543)
                      +|-|++  +   +  ..-+..+....++|..+.-.+.-+.-++.+|.+-+-+......++
T Consensus       178 adQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~la  237 (571)
T KOG1237|consen  178 ADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALA  237 (571)
T ss_pred             ccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHH
Confidence            999971  1   2  245566666677777777666665555667766554443333333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.74  E-value=0.00032  Score=73.84  Aligned_cols=126  Identities=12%  Similarity=0.120  Sum_probs=2.8

Q ss_pred             hHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhc-----------
Q 009130          352 IAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASG-----------  420 (543)
Q Consensus       352 ~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-----------  420 (543)
                      ++++-+.++++.++.+.+.+.+-++..+..++..+..+|-      +|.+.+..+.++++++.++++.+           
T Consensus        26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~   99 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE   99 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------CCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence            3444455799999999999999999999999999988774      33456777778877777654310           


Q ss_pred             -C---------------------------------------cchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHH
Q 009130          421 -F---------------------------------------PGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIF  460 (543)
Q Consensus       421 -~---------------------------------------~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~  460 (543)
                       +                                       ...++++.++.|+|....++...+++-|..++++.+...
T Consensus       100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi  179 (539)
T PF03137_consen  100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI  179 (539)
T ss_dssp             ----------------------------------------------------SSS-------------------------
T ss_pred             ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence             0                                       011345677889999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhhh
Q 009130          461 NTISIACPVGSYICSVRIIGRIYD  484 (543)
Q Consensus       461 g~~~~~~~ig~~i~~~~l~g~l~~  484 (543)
                      |++.....+|+. +|-.+++...+
T Consensus       180 Gi~~~~~~lGPa-~Gf~lg~~~L~  202 (539)
T PF03137_consen  180 GILYAMSILGPA-LGFLLGSFCLR  202 (539)
T ss_dssp             ------------------------
T ss_pred             hhhhHHhhccHH-HHHHHHHHHHh
Confidence            999998888884 66555555443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.51  E-value=0.02  Score=57.81  Aligned_cols=108  Identities=16%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHh---hcCc-------chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcc---hhhHHHHHHhhh
Q 009130          401 IFMVITLVAMSIGHIAIA---SGFP-------GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRH---MGTIFNTISIAC  467 (543)
Q Consensus       401 ~~~~~~~~~~~i~~~~~~---~~~~-------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---~g~~~g~~~~~~  467 (543)
                      ++++++.++.++|.+++.   .+..       ..++++..++++|.|+.=++..+...|.+++++   +-..+.....+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            467778888888887733   2222       357888889999999999999999999998763   455666778888


Q ss_pred             hhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          468 PVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       468 ~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                      ++|+ ++++.+.+++.++.+            |...|.+.++..+++.+..+.-
T Consensus        82 n~G~-~~~~~~~~~i~~~~~------------~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   82 NIGS-LFSPTLVPYIQQNYG------------WFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHH-HHHHHCCCHHHHCS-------------HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhh-Hhhcccchhhccccc------------hhhhhhHHHHHHHHHHHHHHhC
Confidence            8998 477778888888876            9999999998888887765443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.35  E-value=0.0085  Score=63.90  Aligned_cols=160  Identities=15%  Similarity=0.165  Sum_probs=110.9

Q ss_pred             hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhc-----------------
Q 009130          358 SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASG-----------------  420 (543)
Q Consensus       358 ~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~-----------------  420 (543)
                      ..+++.++.+++.+.+-+++.+...+..+...|.      .|.+.+.++.++++++.++.+.+                 
T Consensus       126 RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~------HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~  199 (735)
T KOG3626|consen  126 RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG------HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS  199 (735)
T ss_pred             hcCCCCCcceeEeeecccchhhhhHhHHHhcccc------CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence            3589999999999999999999888888887776      33456667777777766654210                 


Q ss_pred             --Cc--------------------------------c--hHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHH
Q 009130          421 --FP--------------------------------G--NLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTIS  464 (543)
Q Consensus       421 --~~--------------------------------~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~  464 (543)
                        ++                                .  .++++.++.|+|....++...+++-|...+++-+...|++.
T Consensus       200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~  279 (735)
T KOG3626|consen  200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY  279 (735)
T ss_pred             ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence              00                                0  13445667889988999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhccCC-C--Ccccc-cc---chhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          465 IACPVGSYICSVRIIGRIYDRVASG-E--DHTCY-GT---HCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       465 ~~~~ig~~i~~~~l~g~l~~~~g~~-~--~~~~~-~~---~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      ....+|+. +|-.++++......+. .  .+... .+   ..|-..|++.+.+.++..+..+++.++
T Consensus       280 ~~~~lGPa-iGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~  345 (735)
T KOG3626|consen  280 SMAILGPA-IGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE  345 (735)
T ss_pred             HHHHhhhH-HHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99999984 7766666654433222 1  11111 11   235556777777777777666655543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.19  E-value=0.013  Score=59.75  Aligned_cols=122  Identities=12%  Similarity=0.040  Sum_probs=87.9

Q ss_pred             hhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 009130           41 STQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPR  119 (543)
Q Consensus        41 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~  119 (543)
                      ||.+-.+.-.|..+.....+=+ +-++++++..|+|               +-+++..++...++=.+.     .++.+|
T Consensus       399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiG---------------Hv~v~~lgLa~~~~Rf~~-----~S~L~n  458 (618)
T KOG3762|consen  399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIG---------------HVNVMYLGLACNVGRFLY-----YSYLQN  458 (618)
T ss_pred             hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhc---------------ccceeeehhhHHHHHHHH-----HHHhcC
Confidence            4555444444422222222222 2345777777777               999999999998888888     778888


Q ss_pred             CChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhh-hhhHHHHHHHHHHhcCCC
Q 009130          120 PVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFV-GLSGAVLTQVYKTVCNGN  185 (543)
Q Consensus       120 ~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~-~lg~~i~~~l~~~l~~~~  185 (543)
                         .|..+-.-+++|+-.+..+.+..++++...| +-|..+.+++...+ |+|--+|+.+++.+++..
T Consensus       459 ---~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  459 ---PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             ---chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence               5888889999999999999999999999998 45888888877654 566666666666665443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.18  E-value=0.1  Score=52.30  Aligned_cols=160  Identities=11%  Similarity=0.118  Sum_probs=103.4

Q ss_pred             hhchHHHHHh--hCCCchhhHHHH-HHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCcch
Q 009130          349 MNNIAQVGES--LHYSTTEINSLI-SLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFPGN  424 (543)
Q Consensus       349 ~~~~~~~~~~--~g~s~~~a~~~~-~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~~~  424 (543)
                      -.++.+|+.+  .|++.+|...-. .+..=......+....+.|.++.|      +++++..+..++...++. .++...
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk------pviil~~~~~i~t~~lll~~~sv~~   96 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK------PVIILQALSYIITWLLLLFGTSVLA   96 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHCcHHH
Confidence            4455556644  688887765433 333334455666778889999654      777777776666655554 455566


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHH
Q 009130          425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSF  504 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f  504 (543)
                      +-+.-++.|+..+.- ...++++=...++++.-++.+....+..+|.. ++.. .|.+.-..+         ..+|....
T Consensus        97 mq~~q~~yg~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~-~s~~-lgQllvs~~---------~~sy~~L~  164 (412)
T PF01770_consen   97 MQLMQFFYGLATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRF-ISSL-LGQLLVSFG---------GVSYFQLN  164 (412)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHhc---------CCCHHHHH
Confidence            667777878776653 35667777778889988888887666666653 3432 332222222         12488888


Q ss_pred             HHHHHHHHHHHHHHHHHhhcch
Q 009130          505 MIMAFVAFFGSLVAFLLFLRTR  526 (543)
Q Consensus       505 ~~~~~~~~~~~i~~~~~~~~~~  526 (543)
                      ++..+...+++++++++...+|
T Consensus       165 ~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  165 YISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCc
Confidence            8888888888888888765443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.18  E-value=0.2  Score=51.70  Aligned_cols=145  Identities=11%  Similarity=-0.011  Sum_probs=82.0

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCC-----CchhhHHHHHHHHHHHhhh-ccccccchhhhhhhcCCCchHH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHY-----STTEINSLISLWSIWNFFG-RFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~a~~~~~~~~i~~~ig-~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      +.+....+++|+..+.++    .+-+.-.....     +.+...++.+...+...+. .++.+++++|+.|+      .+
T Consensus         7 ~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~------~l   76 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKE------AL   76 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------Hh
Confidence            456666666666543322    12222222333     3355666666555555555 77889999999654      34


Q ss_pred             HHHHHHHHHHHHHHHh-----hcCc---------------------------chHHHHHHHHHhhhhhhhh-hHHHHHHh
Q 009130          403 MVITLVAMSIGHIAIA-----SGFP---------------------------GNLFVGTMIVGVCYGSQWS-LMPTITSE  449 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~-----~~~~---------------------------~~~~~~~~l~G~~~g~~~~-~~~~~~~~  449 (543)
                      .-+........+.++.     ..+.                           +...+.-+..-+......+ .....+.|
T Consensus        77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand  156 (472)
T TIGR00769        77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ  156 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333333222221     1000                           0011112222333344455 67789999


Q ss_pred             hcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 009130          450 IFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYD  484 (543)
Q Consensus       450 ~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~  484 (543)
                      .+.+++..+-++++.+++++|. ++++.+..++.+
T Consensus       157 i~t~~qakRfy~l~~~ganlg~-i~sg~~~~~~~~  190 (472)
T TIGR00769       157 ITTIDEAKRFYALFGLGANVAL-IFSGRTIKYFSK  190 (472)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            9999999999999999999998 477767666653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.03  E-value=0.002  Score=63.16  Aligned_cols=98  Identities=13%  Similarity=0.111  Sum_probs=3.2

Q ss_pred             HHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHH--HHHHHHHHHH-h----------hcCcchHHHHHHHHHh
Q 009130          368 SLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL--VAMSIGHIAI-A----------SGFPGNLFVGTMIVGV  434 (543)
Q Consensus       368 ~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~--~~~~i~~~~~-~----------~~~~~~~~~~~~l~G~  434 (543)
                      ..+..++++..+||.+.++.- +-++    +++++...+.  ++.+..+++. .          ..+.+..++..+++|+
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~-~~~~----~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~  260 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPR-WPGP----SPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF  260 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeE-eccc----ccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH
Confidence            356689999999999887642 1111    1223332211  1111111111 0          1233445666778899


Q ss_pred             hhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhh
Q 009130          435 CYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVG  470 (543)
Q Consensus       435 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig  470 (543)
                      ..|-..+....+.++..+++++..+-.++...-.+|
T Consensus       261 TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~G  296 (309)
T PF01733_consen  261 TNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFG  296 (309)
T ss_dssp             ------HHHH--------------------------
T ss_pred             ccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            988888888888888888777766655554444444

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.02  E-value=0.028  Score=42.59  Aligned_cols=70  Identities=13%  Similarity=-0.027  Sum_probs=56.4

Q ss_pred             hhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh
Q 009130          344 SGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS  419 (543)
Q Consensus       344 ~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~  419 (543)
                      .-+.+...+|.+.+|.++|.++++++.+...++..+|.+...++.++.      ++...+..+.+...+.++.++.
T Consensus         7 gRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    7 GRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS------RPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             HHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999999999999999999999999999887774      2235666677777777666663

Note that many members are hypothetical proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.97  E-value=0.012  Score=43.95  Aligned_cols=55  Identities=13%  Similarity=0.086  Sum_probs=40.2

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhcc-cccchhhHhhhhcccccccccccccccCCchHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGG-SAGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILC  102 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~  102 (543)
                      -++.|...++.|+++.|++.+....-+.. ...+++|.++||++               +++.......++
T Consensus        20 ~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~---------------~~~~~l~~~~~~   75 (77)
T PF12832_consen   20 YPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFG---------------KRKVILLGSLFM   75 (77)
T ss_pred             HhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------ccHHHHHHHHHH
Confidence            34445566689999999996655555554 47889999999998               777776665543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.86  E-value=0.034  Score=55.63  Aligned_cols=125  Identities=11%  Similarity=0.052  Sum_probs=85.1

Q ss_pred             hhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-------
Q 009130          347 ATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-------  419 (543)
Q Consensus       347 ~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-------  419 (543)
                      .=..+++++.+++|.+....+..-...-+.+.+-+++.|..+||..-|.+ +|++.+....+...+++.++..       
T Consensus        50 ~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G-RRRPfI~~~s~~i~~~l~Lig~aaDig~~  128 (498)
T KOG0637|consen   50 LELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYG-RRRPFILAGSLLIAVSLFLIGYAADIGLL  128 (498)
T ss_pred             HHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccc-cccchHHHhhHHHHHHHhhhhhHhhhhHH
Confidence            34677889999999998888877777778888999999999998765543 4456666666666666554321       


Q ss_pred             --cCcc----hHHHHHH-----HHHhhhhhhhhhHHHHHHhhcCCcchhh-HHHHHHhhhhhhhh
Q 009130          420 --GFPG----NLFVGTM-----IVGVCYGSQWSLMPTITSEIFGVRHMGT-IFNTISIACPVGSY  472 (543)
Q Consensus       420 --~~~~----~~~~~~~-----l~G~~~g~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~ig~~  472 (543)
                        .+..    ..-+...     +.-+.........-++..|...++++.+ +++......++|+.
T Consensus       129 lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv  193 (498)
T KOG0637|consen  129 LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV  193 (498)
T ss_pred             hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence              1111    1222233     3334555556667788999988877777 88877777777773

>PRK03612 spermidine synthase; Provisional

Probab=95.53  E-value=0.39  Score=50.57  Aligned_cols=123  Identities=19%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHH--HHHHHHHHHHHHHh---hcCc--chHHHHHH
Q 009130          358 SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMV--ITLVAMSIGHIAIA---SGFP--GNLFVGTM  430 (543)
Q Consensus       358 ~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~--~~~~~~~i~~~~~~---~~~~--~~~~~~~~  430 (543)
                      -+|-+....+...+++..+..+|..+.+++.++..++.     ....  ++.+......++..   ....  ...+...+
T Consensus        44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-----~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~  118 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-----VAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVL  118 (521)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35888888888888898888899988887754332210     1111  11111111111111   1001  11233445


Q ss_pred             HHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhh-hhcc
Q 009130          431 IVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIY-DRVA  487 (543)
Q Consensus       431 l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~-~~~g  487 (543)
                      +.++..|..+|...-+..+. ..++.+...|-+...+.+|+ ++|.++.+++. ...|
T Consensus       119 ~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa-~~G~l~~~~vLlp~lG  174 (521)
T PRK03612        119 LIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGA-LVGGLAFPFLLLPRLG  174 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHH-HHHHHHHHHHHHHhcc
Confidence            56777777766655544432 22345666677777777777 36666666654 3555

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=94.96  E-value=1.3  Score=42.28  Aligned_cols=89  Identities=13%  Similarity=0.149  Sum_probs=54.6

Q ss_pred             cchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhh
Q 009130           64 GILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTG  143 (543)
Q Consensus        64 ~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~  143 (543)
                      .+....+.||+-             +|.|..  +..++-+.+.++     .++..+   .+.-+.+-.+..++.|.....
T Consensus        79 Kl~~Pff~~rfp-------------f~~Ri~--~~v~~sa~s~~l-----Vafs~s---~~~sL~GV~~aSissGlGEiT  135 (409)
T KOG3880|consen   79 KLTAPFFIHRFP-------------FGFRIA--LVVLLSALSFFL-----VAFSNS---VPMSLLGVVFASISSGLGEIT  135 (409)
T ss_pred             HHhchhhhhhcc-------------cchHHH--HHHHHHhcceEE-----EEeccc---hhHHHhhhhhhhhcCCcceee
Confidence            445566677764             556643  344566777777     677665   677777777888888877665


Q ss_pred             HHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHH
Q 009130          144 NIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYK  179 (543)
Q Consensus       144 ~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~  179 (543)
                      -.. ++..+|+.   +.+-...|.|.++.+|+.-..
T Consensus       136 FL~-lss~Y~~~---~i~~WSSGTGgAGliGa~SYa  167 (409)
T KOG3880|consen  136 FLA-LSSRYPSI---VIAGWSSGTGGAGLIGASSYA  167 (409)
T ss_pred             hhh-hhccCCCc---eeccccCCCCcchhhhhhHHH
Confidence            444 34445422   233345666667777764333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.44  E-value=0.15  Score=51.36  Aligned_cols=117  Identities=9%  Similarity=0.034  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcCCC----CcchhHHHHHhh
Q 009130           93 VVHFTGAILCFTGYFLVWASVVGLLP-RPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFGHY----SGTIVGILKGFV  167 (543)
Q Consensus        93 ~~~~~g~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp~~----rg~~~gi~~~~~  167 (543)
                      |++++|.++..+|.+++.++...... +......++++-.+.++|.|..-+......+|-|+++    |......+..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            67889999999999995543222111 0012356777788899999999999999999999632    456677888999


Q ss_pred             hhhHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhhee
Q 009130          168 GLSGAVLTQVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVR  209 (543)
Q Consensus       168 ~lg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (543)
                      ++|+.++..+..++-++.+|.+.|.++.+..+++++....-+
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            999999988888888888999999888888888777665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.16  E-value=7  Score=39.26  Aligned_cols=99  Identities=12%  Similarity=0.062  Sum_probs=55.2

Q ss_pred             hhHHHHHH-HHHHHhhhccccccchhhhhhhcCCCchHHHHHHH---HHHHHHHHHHh------hcCcchHHHHHHHHHh
Q 009130          365 EINSLISL-WSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL---VAMSIGHIAIA------SGFPGNLFVGTMIVGV  434 (543)
Q Consensus       365 ~a~~~~~~-~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~---~~~~i~~~~~~------~~~~~~~~~~~~l~G~  434 (543)
                      ..-..... +++...+|++...+.-+.=       ||.+.....   +.......+..      ..+..+......++|+
T Consensus       283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~-------~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lgl  355 (406)
T KOG1479|consen  283 YALLLVFLSFNVFDLIGSILAALLTWPD-------PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGL  355 (406)
T ss_pred             hHHHHHHHHhHHHHHhhhhhhhcccCCC-------CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHh
Confidence            34444456 8899999988777665542       122222221   11111111111      2345567777888899


Q ss_pred             hhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhh
Q 009130          435 CYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGS  471 (543)
Q Consensus       435 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~  471 (543)
                      ..|-..++...+.++..+++++- +.|.+.....+++
T Consensus       356 snGYltsl~m~~aPk~v~~~e~e-~aG~~m~~fl~~G  391 (406)
T KOG1479|consen  356 SNGYLTSLIMMYAPKQVKPSEKE-AAGNLMVFFLVGG  391 (406)
T ss_pred             ccchHhhheehhcCCCCChHHHH-HHHHHHHHHHHHH
Confidence            88877777777888887765544 4444443343444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.45  E-value=1.2  Score=45.56  Aligned_cols=96  Identities=6%  Similarity=-0.083  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHh
Q 009130          370 ISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSE  449 (543)
Q Consensus       370 ~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~  449 (543)
                      .++......+..++.+.+.|+++.      |+.+.++.....+..+.+...|.+.++....+.|+|.+..+.-...+.+|
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~------K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~  129 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGP------KWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTS  129 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhH------HHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhh
Confidence            678888888999999999999955      48888888888877777777888889999999999999888888889999


Q ss_pred             hcCCcchhhHHHHHHhhhhhhh
Q 009130          450 IFGVRHMGTIFNTISIACPVGS  471 (543)
Q Consensus       450 ~~~~~~~g~~~g~~~~~~~ig~  471 (543)
                      ...+|...++.++.......+.
T Consensus       130 ~st~~tie~Nisi~Wai~~~~l  151 (461)
T KOG3098|consen  130 NSTRETIERNISIFWAIGQSSL  151 (461)
T ss_pred             cCChhhHHHHHHHHHHHHHHHH
Confidence            9998888888888755444443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=92.21  E-value=8.4  Score=39.47  Aligned_cols=55  Identities=9%  Similarity=0.124  Sum_probs=37.1

Q ss_pred             hhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          456 MGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       456 ~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      ....++.+--.=.+.. +++|++.|.+.+..+            +..+..+.++..+++..+=+++..
T Consensus       147 La~~NA~mRRIDL~ck-llaPl~vG~l~t~~s------------~~~~~~~i~~~N~~S~~vEy~~l~  201 (432)
T PF06963_consen  147 LARMNATMRRIDLFCK-LLAPLFVGLLMTFAS------------PVIAAIFIAGWNLASVFVEYFLLA  201 (432)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHhhccC------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444432223344 578888999888765            788888888999998887555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.82  E-value=18  Score=37.71  Aligned_cols=116  Identities=10%  Similarity=-0.102  Sum_probs=62.7

Q ss_pred             HHHHHhhhccc--ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhc----cCCCCC----
Q 009130           52 RVAVFKDMGGS--AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVG----LLPRPV----  121 (543)
Q Consensus        52 ~~~~~~~~~~~--~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~----~~~~~~----  121 (543)
                      .+-....+...  +.....++.++++               +++++-+-...+..-..++++..-.    +.++..    
T Consensus        62 flK~~~vlP~a~~f~~~y~kl~n~~s---------------~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~  126 (491)
T PF03219_consen   62 FLKVWGVLPVAILFTILYSKLSNRLS---------------REKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKL  126 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHh
Confidence            44343444332  4556888888887               8888777766666666665553221    111100    


Q ss_pred             ---------------hHHHHHHHHHHHhcCcchhhh-hHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhc
Q 009130          122 ---------------PVPLMCLFIFTAAHAQNFFNT-GNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVC  182 (543)
Q Consensus       122 ---------------~~~~~~~~r~l~G~g~g~~~~-~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~  182 (543)
                                     ..|.+.++.++.-+-...... .-....++.++ +|-.+..+++..+.++|.++++.+..++.
T Consensus       127 ~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~  204 (491)
T PF03219_consen  127 LAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFS  204 (491)
T ss_pred             hhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           011111222222222222211 23455677776 55666778888888888888877766653

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=91.26  E-value=3  Score=41.19  Aligned_cols=65  Identities=12%  Similarity=-0.013  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchh-----hhhhhcC
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSD-----VFLHKLG  396 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD-----~~~~~~~  396 (543)
                      +++..+...+.. .+.-++....+|.+++..|.|-++.+.....+.=.  --.+++..+.|     |+|||+.
T Consensus        31 ~~illLl~LYll-QGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~Grrks  100 (510)
T KOG3574|consen   31 SSILLLLFLYLL-QGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKS  100 (510)
T ss_pred             hhHHHHHHHHHH-cCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccc
Confidence            344444444433 45555666788999988888766555443333222  24678999999     7777654

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=90.69  E-value=0.57  Score=43.67  Aligned_cols=152  Identities=14%  Similarity=0.041  Sum_probs=84.8

Q ss_pred             HHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHhh
Q 009130          356 GESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVC  435 (543)
Q Consensus       356 ~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~  435 (543)
                      ++.+|+...+.+.++.......+....+.|-+.||-|||+   ...++++..   +++|+.=..+....+.+..++-|+.
T Consensus        64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKr---acvtycitY---iLsCiTKhSpqYkVLmVGR~LGGia  137 (454)
T KOG4332|consen   64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKR---ACVTYCITY---ILSCITKHSPQYKVLMVGRVLGGIA  137 (454)
T ss_pred             ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhcccc---ceeeehHHH---HHHHHhhcCCceEEEeehhhhhhHH
Confidence            3556777777766654433344444556678899998873   222333333   3333322234455677888888988


Q ss_pred             hhhhhhhHHH-HHHhhcCCcchhh-----HHH-HHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHH
Q 009130          436 YGSQWSLMPT-ITSEIFGVRHMGT-----IFN-TISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA  508 (543)
Q Consensus       436 ~g~~~~~~~~-~~~~~~~~~~~g~-----~~g-~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~  508 (543)
                      ....++.+-+ ++.|...++.+..     .++ .....+.+-.+ ++...+..+.|..+-          +.-.+|-..+
T Consensus       138 TsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAi-iaGlfgn~lvd~~sl----------GPVAPFdAAa  206 (454)
T KOG4332|consen  138 TSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAI-IAGLFGNLLVDTFSL----------GPVAPFDAAA  206 (454)
T ss_pred             HHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHH-HHHHHHHHHHHHhcc----------CCCCchHHHH
Confidence            8888887765 5777765444322     111 11334444442 334445566666542          1335666666


Q ss_pred             HHHHHHHHHHHHHhhc
Q 009130          509 FVAFFGSLVAFLLFLR  524 (543)
Q Consensus       509 ~~~~~~~i~~~~~~~~  524 (543)
                      ++..++..+.+--+.+
T Consensus       207 cfLaigmAvil~~W~E  222 (454)
T KOG4332|consen  207 CFLAIGMAVILSSWSE  222 (454)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            6666666555544444

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=90.61  E-value=1.7  Score=46.20  Aligned_cols=160  Identities=17%  Similarity=0.203  Sum_probs=105.2

Q ss_pred             hhhhhhchHHHH-HhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-----
Q 009130          345 GIATMNNIAQVG-ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-----  418 (543)
Q Consensus       345 ~~~~~~~~~~~~-~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-----  418 (543)
                      .+++..++-.|+ .+++.+...+...+..+.-......+++++++|.+-     +|-+++.++.++..++..++.     
T Consensus        53 ~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~-----gry~tI~~~s~i~~~G~~~lt~~a~~  127 (571)
T KOG1237|consen   53 FFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFL-----GRYFTINIGSLISLLGLFGLTLSAMI  127 (571)
T ss_pred             HhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444554455 456888888888888888888889999999999874     556788887777666654332     


Q ss_pred             h---cC-------------c-----chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcch------hhHHHHHHhhhhhhh
Q 009130          419 S---GF-------------P-----GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHM------GTIFNTISIACPVGS  471 (543)
Q Consensus       419 ~---~~-------------~-----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~------g~~~g~~~~~~~ig~  471 (543)
                      .   +.             +     ..++...-+..+|.|+.-+...+.-+|.+++++.      ..-+.........|.
T Consensus       128 ~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~  207 (571)
T KOG1237|consen  128 PALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGA  207 (571)
T ss_pred             hhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHH
Confidence            0   10             0     0245555566778888888888888999983222      233444455566666


Q ss_pred             hhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          472 YICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       472 ~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      . ++..+.-++-|..+            |...|-+..+..+++.++.+...
T Consensus       208 l-~a~t~~vyiq~~~~------------w~lgf~i~~~~~~lai~iF~~g~  245 (571)
T KOG1237|consen  208 L-LAQTVLVYIQDNVG------------WKLGFGIPTVLNALAILIFLPGF  245 (571)
T ss_pred             H-HHHHHHHhhhhccc------------ceeeccHHHHHHHHHHHHHHcCc
Confidence            3 44333344445544            88889988888888877765543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=90.15  E-value=15  Score=34.39  Aligned_cols=21  Identities=5%  Similarity=-0.045  Sum_probs=16.4

Q ss_pred             hhHHHhhcchhHHHHHHHHHh
Q 009130          320 MNLLQAMCTGNFWFLCIATLC  340 (543)
Q Consensus       320 ~~~~~~~~~~~f~~~~l~~~~  340 (543)
                      .+..+.+|++..|...+.+..
T Consensus        85 ~s~~~~LK~K~tw~w~~~Yg~  105 (267)
T PF07672_consen   85 PSYKSILKEKETWKWILIYGI  105 (267)
T ss_pred             chHHHHHccchHHHHHHHHHH
Confidence            566889999999887776654

>PRK03612 spermidine synthase; Provisional

Probab=89.55  E-value=4.1  Score=43.03  Aligned_cols=78  Identities=10%  Similarity=-0.069  Sum_probs=50.1

Q ss_pred             HHHHHHhcCcchhhhhHHHHHhhhcCCCCcchhHHHHHhhhhhHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHHHHH
Q 009130          128 LFIFTAAHAQNFFNTGNIVTGVMNFGHYSGTIVGILKGFVGLSGAVLTQVYKTVCNG--NPSTYILVLALLPTLVSLLFM  205 (543)
Q Consensus       128 ~~r~l~G~g~g~~~~~~~~~~~~~fp~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~  205 (543)
                      ...++.++-.|+..|....+..+.-.++-|...|-+.+...+|+++|+.+.++++-+  ....-.++.+.+..+.+++..
T Consensus       115 ~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~  194 (521)
T PRK03612        115 VLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL  194 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            344566677777777666655543333467778888889999999999888877532  334445555555555554433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=89.47  E-value=5.5  Score=40.18  Aligned_cols=124  Identities=11%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             HHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCC
Q 009130          375 IWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGV  453 (543)
Q Consensus       375 i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~  453 (543)
                      +-..+-+++..+..+|+..+      .=+....+++++++++.+. ++...-++..++.++..|..=..+-.+ ...+++
T Consensus        70 ~P~l~~Kl~aP~fi~~v~y~------~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~  142 (402)
T PF02487_consen   70 LPSLLVKLIAPFFIHRVPYW------IRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGK  142 (402)
T ss_pred             HHHHHHHHHhHhhhhhccch------HHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCc
Confidence            34555666677777777432      1234455566777776663 455555666677777666554444444 345654


Q ss_pred             cchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 009130          454 RHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLL  521 (543)
Q Consensus       454 ~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  521 (543)
                          ...+-+..+.+.++ ++|+...-.+.+ .|-          +.+..+.++..+.++-.+..+++
T Consensus       143 ----~~l~~wssGTG~aG-l~Ga~~y~~lT~-~g~----------s~~~tll~~~~lp~~~~~~~f~~  194 (402)
T PF02487_consen  143 ----SSLSAWSSGTGGAG-LVGALYYLGLTT-LGL----------SPRTTLLIMLVLPAIFLLSYFFL  194 (402)
T ss_pred             ----cccccccCCcChhh-HHHHHHHHHHHH-hCc----------CHHHHHHHHHHHHHHHHHHHHHh
Confidence                23455555556665 466655544444 431          36777777766554444433333

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	543
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 85/597 (14%), Positives = 164/597 (27%), Gaps = 196/597 (32%)

Query: 3   MEERLSTNSKWIATVASIWIQCSVGTTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS 62
           +EE L  N K++ +   I  +     +    +Y        N +Q       VF      
Sbjct: 83  VEEVLRINYKFLMS--PIKTEQR-QPSMMTRMYIEQRDRLYNDNQ-------VFAKY--- 129

Query: 63  AGILSGLLFSYVTLNHHHHQTRTRFLR---GPWV-VHFTGAILCFTG-YFLVWASVVGLL 117
                      V+    + + R   L       V +   G +    G  ++    V    
Sbjct: 130 ----------NVSRLQPYLKLRQALLELRPAKNVLID--GVLGS--GKTWVA-LDVC--- 171

Query: 118 PRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGV--MNFGHYSGTIVGILKGFVGLSGAVLT 175
                V   C   F                 +  +N  + + +   +L+    L    + 
Sbjct: 172 -LSYKV--QCKMDF----------------KIFWLNLKNCN-SPETVLEMLQKLL-YQID 210

Query: 176 QVYKTVCNGNPSTYILVLALLPTLVSLLFMSHVRIYGTNS------VDDKKHLNAF---- 225
             + +  + + S   L +  +   +  L  S  + Y  N       V + K  NAF    
Sbjct: 211 PNWTSRSD-HSSNIKLRIHSIQAELRRLLKS--KPY-ENCLLVLLNVQNAKAWNAFNLSC 266

Query: 226 --------SAVAMTL-AAYFMVITVMENLLTF------SLWARIITFIILLL----LLAS 266
                     V   L AA    I++  + +T       SL  + +      L    L  +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 267 PLRVAITAD--REDAMT--------SPKLST------PQQDPL----AYHELA--DDESK 304
           P R++I A+  R+   T          KL+T         +P      +  L+     + 
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 305 VTAAFDDKIL-------KDEEDMNLLQAMCTGNFWFLCIATLCGMGSGI--------ATM 349
           +       +L          + M ++  +     + L           I          +
Sbjct: 387 IPT----ILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPKESTISIPSIYLELKVKL 439

Query: 350 NNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVA 409
            N       LH S  +  ++   +   +    +   Y    + H                
Sbjct: 440 ENEYA----LHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSH---------------- 476

Query: 410 MSIG-HIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFG-----VRHMGTIFNTI 463
             IG H+                    +  + +L   +  + F      +RH  T +N  
Sbjct: 477 --IGHHLKNIE----------------HPERMTLFRMVFLD-FRFLEQKIRHDSTAWNAS 517

Query: 464 SIACPV-------GSYICSV-----RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA 508
                          YIC       R++  I D +   E++     +  +L   +MA
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 24/174 (13%), Positives = 53/174 (30%), Gaps = 17/174 (9%)

Query: 357 ESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIA 416
           E  H++  + +    L+      G    G+ SD        A  +F +  +   +I +  
Sbjct: 281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM 340

Query: 417 IASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGT---IFNTISIACPVGSYI 473
             +G P    +  +++G        L+     E+   +  GT             +G  +
Sbjct: 341 NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY---LGGSV 397

Query: 474 CSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRR 527
            +  I+G   D                    +++        L+  ++    RR
Sbjct: 398 AASAIVGYTVDF-----------FGWDGGFMVMIGGSILAVILLIVVMIGEKRR 440

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	543
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.94
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.92
2xut_A	524	Proton/peptide symporter family protein; transport	99.92
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.49
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.48
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.47
2xut_A	524	Proton/peptide symporter family protein; transport	99.39
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.35
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.94
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.89

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.3e-33  Score=291.47  Aligned_cols=395  Identities=13%  Similarity=0.115  Sum_probs=288.9

Q ss_pred             hhhHHHHHHHHHHHHHcC-CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccc
Q 009130           10 NSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRF   87 (543)
Q Consensus        10 ~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~   87 (543)
                      +++|..+....+..+..+ ..+.++.+.|.+.+|+ .+..+.+++.+.+.++.. .+++.|++.||+|            
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g------------   90 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSN------------   90 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcC------------
Confidence            345665555444444333 3456777889999999 999999988777777776 6889999999999            


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHhcc----CCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHH
Q 009130           88 LRGPWVVHFTGAILCFTGYFLVWASVVGL----LPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGI  162 (543)
Q Consensus        88 ~~g~r~~~~~g~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi  162 (543)
                         ||+++.++.++.+++.++     +++    +++   ++.+++.|+++|++.+...+....+++|++| ++|++++++
T Consensus        91 ---~r~~l~~~~~~~~~~~~~-----~~~~~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  159 (451)
T 1pw4_A           91 ---PRVFLPAGLILAAAVMLF-----MGFVPWATSS---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV  159 (451)
T ss_dssp             ---HHHHHHHHHHHHHHHHHH-----HHHCHHHHSS---SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             ---chHHHHHHHHHHHHHHHH-----HHhhhhcccc---HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHH
Confidence               999999999999999999     555    566   6889999999999999999999999999998 679999999


Q ss_pred             HHHhhhhhHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHH-HHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHH
Q 009130          163 LKGFVGLSGAVLTQVYKTVCNGNP-STYILVLALLPTLVSL-LFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVIT  240 (543)
Q Consensus       163 ~~~~~~lg~~i~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (543)
                      ...+.++|.++++.+++.+.+..+ |++.+.+..+..++.. +...++++.                             
T Consensus       160 ~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~-----------------------------  210 (451)
T 1pw4_A          160 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT-----------------------------  210 (451)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCC-----------------------------
Confidence            999999999999999988765555 7766655544333322 111222211                             


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcch
Q 009130          241 VMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDM  320 (543)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (543)
                                                         +++.+..++++ .+.+     .+.+.+      ++++++...++.
T Consensus       211 -----------------------------------~~~~~~~~~~~-~~~~-----~~~~~~------~~~~~~~~~~~~  243 (451)
T 1pw4_A          211 -----------------------------------PQSCGLPPIEE-YKND-----YPDDYN------EKAEQELTAKQI  243 (451)
T ss_dssp             -----------------------------------STTTCCCSCTT-TCCC------------------------CCTHH
T ss_pred             -----------------------------------HhhcCCCChhh-hccc-----ccccch------hhhhcccccccc
Confidence                                               11110000000 0000     000000      000000111112


Q ss_pred             hHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhh--hhhcCC
Q 009130          321 NLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVF--LHKLGW  397 (543)
Q Consensus       321 ~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~--~~~~~~  397 (543)
                      ..++.++++.+|...+..++.......+..+.|.++++ .|+++.+++...++..++.++++++.|++.||+  ++|   
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~---  320 (451)
T 1pw4_A          244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR---  320 (451)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH---
T ss_pred             hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---
Confidence            24678899999999988888877777888889999987 799999999999999999999999999999998  543   


Q ss_pred             CchHHHHHHHHHHH-HHHHHHhhc---CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhh-hhh
Q 009130          398 ARPIFMVITLVAMS-IGHIAIASG---FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPV-GSY  472 (543)
Q Consensus       398 ~r~~~~~~~~~~~~-i~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~i-g~~  472 (543)
                         +.+..+.++.. ++++++...   +.....+..++.|++.+...+....++.|.+|+++++++.|+.+....+ |. 
T Consensus       321 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~-  396 (451)
T 1pw4_A          321 ---GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS-  396 (451)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH-
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH-
Confidence               44444544444 555554422   3344556677788888888888889999999999999999999999998 88 


Q ss_pred             hhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          473 ICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       473 i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      .++|.+.|.+.|..|            |+..|++.+++.+++.++.+++.+
T Consensus       397 ~~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          397 VAASAIVGYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            488999999999887            999999999888888777665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=4.4e-32  Score=278.96  Aligned_cols=373  Identities=11%  Similarity=0.036  Sum_probs=272.3

Q ss_pred             hhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccc
Q 009130           10 NSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRF   87 (543)
Q Consensus        10 ~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~   87 (543)
                      +++|..+.......+..+. .+.++.+.|.+.+++|+++.+.+++.+.+.++.. .+++.|++.||+|            
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g------------   89 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLS------------   89 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSC------------
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc------------
Confidence            3344444433333333333 3567788899999999999999988787777775 7889999999999            


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHh
Q 009130           88 LRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGF  166 (543)
Q Consensus        88 ~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~  166 (543)
                         ||+++.++.++.+++.++.+.  .+++++   ++.+++.|+++|+|.+...+....+++|++| ++|++++++...+
T Consensus        90 ---~r~~l~~~~~~~~~~~~~~~~--~~~~~~---~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  161 (438)
T 3o7q_A           90 ---YKAGIITGLFLYALGAALFWP--AAEIMN---YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF  161 (438)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH--HHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred             ---chHHHHHHHHHHHHHHHHHHh--cccccc---HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence               999999999999999999321  156666   8999999999999999999999999999998 6899999999999


Q ss_pred             hhhhHHHHHHHHHHhc-CCCc-------------------------hhHHHHHHHHHHHHHHHHHhheeccCCCCcccch
Q 009130          167 VGLSGAVLTQVYKTVC-NGNP-------------------------STYILVLALLPTLVSLLFMSHVRIYGTNSVDDKK  220 (543)
Q Consensus       167 ~~lg~~i~~~l~~~l~-~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (543)
                      .++|.++++.+++.+. +...                         |++.++...+...+..                  
T Consensus       162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~------------------  223 (438)
T 3o7q_A          162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA------------------  223 (438)
T ss_dssp             HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHH------------------
Confidence            9999999999888876 3322                         3333322221111100                  


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCC
Q 009130          221 HLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELAD  300 (543)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (543)
                                                                   ....  ....|+.++   +             +++
T Consensus       224 ---------------------------------------------~~~~--~~~~p~~~~---~-------------~~~  240 (438)
T 3o7q_A          224 ---------------------------------------------LLIM--LTKFPALQS---D-------------NHS  240 (438)
T ss_dssp             ---------------------------------------------HHHH--HCCCCCCTT---T-------------CCC
T ss_pred             ---------------------------------------------HHHH--HHcCCcccc---c-------------ccc
Confidence                                                         0000  011111110   0             000


Q ss_pred             CccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhhhhhchHHH-HHhh-CCCchhhHHHHHHHHHHHh
Q 009130          301 DESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIATMNNIAQV-GESL-HYSTTEINSLISLWSIWNF  378 (543)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~a~~~~~~~~i~~~  378 (543)
                                 ++++++...+.++.+++|.+|...+..++.......+..+.|.+ .++. |+++.+++...++..++..
T Consensus       241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  309 (438)
T 3o7q_A          241 -----------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF  309 (438)
T ss_dssp             -----------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             -----------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence                       00011122445788899999999988888877777788889998 8776 9999999999999999999


Q ss_pred             hhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhh
Q 009130          379 FGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIASGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGT  458 (543)
Q Consensus       379 ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~  458 (543)
                      +++++.|+++||+++|      +.+..+.++..++++++...+.....+..++.|++.+..++...++..|.+|++ ++.
T Consensus       310 ~~~~~~g~l~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~  382 (438)
T 3o7q_A          310 IGRFTGTWLISRFAPH------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKY  382 (438)
T ss_dssp             HHHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHH
T ss_pred             HHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccc
Confidence            9999999999999654      566677777777666655433334455567888888888888888989999966 888


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHH
Q 009130          459 IFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFG  514 (543)
Q Consensus       459 ~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~  514 (543)
                      +.++.. ...++. .++|.+.|.+.|..|+           |+..|++.+++.++.
T Consensus       383 ~~~~~~-~~~~g~-~~~~~~~g~l~~~~g~-----------~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          383 GSSFIV-MTIIGG-GIVTPVMGFVSDAAGN-----------IPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHH-HTTHHH-HHHHHHHHHHHHHHTS-----------SGGGGHHHHHHHHHH
T ss_pred             hhhHHH-HHHHHH-HHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHH
Confidence            888776 456777 4889999999998863           777777655444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=1.5e-28  Score=256.50  Aligned_cols=431  Identities=13%  Similarity=0.047  Sum_probs=266.7

Q ss_pred             ccccccchhhHHHHHHHHHHHHHcCC-ccccccccHHHHhhcCC--------ChhhHHHHHHHhhhccc-ccchhhHhhh
Q 009130            3 MEERLSTNSKWIATVASIWIQCSVGT-TYTFSIYSSTLKSTQNY--------DQSTLERVAVFKDMGGS-AGILSGLLFS   72 (543)
Q Consensus         3 ~~~~~~~~~~w~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~~~--------s~~~~~~~~~~~~~~~~-~~~~~G~l~d   72 (543)
                      |+++.++++-|.+.+.+.+-.+..|. ...++...|.++++++.        ++.+.+++.+.+.+|.. .+++.|+++|
T Consensus         1 m~~~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laD   80 (491)
T 4gc0_A            1 MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN   80 (491)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455556655544443333332 23455667888887743        23455677778888876 5778999999


Q ss_pred             hcccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcc------------------CCCCChHHHHHHHHHHHh
Q 009130           73 YVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWASVVGL------------------LPRPVPVPLMCLFIFTAA  134 (543)
Q Consensus        73 ~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~~~~~r~l~G  134 (543)
                      |+|               ||+++.++.+++.++.++     +++                  +++   ++.++++|+++|
T Consensus        81 r~G---------------Rk~~l~~~~~l~~i~~i~-----~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G  137 (491)
T 4gc0_A           81 RFG---------------RRDSLKIAAVLFFISGVG-----SAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGG  137 (491)
T ss_dssp             HTC---------------HHHHHHHHHHHHHHHHHH-----HHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHH
T ss_pred             Hhc---------------CHHHHHHHHHHHHHHHHH-----HHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHH
Confidence            999               999999999999999999     663                  445   899999999999


Q ss_pred             cCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCC--------CchhHHHHHHHHHHHHHHHHH
Q 009130          135 HAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNG--------NPSTYILVLALLPTLVSLLFM  205 (543)
Q Consensus       135 ~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~  205 (543)
                      +|.|...+....+++|+.| ++|++..++...+..+|..+++.+.......        ..|++.+....++.++.+...
T Consensus       138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (491)
T 4gc0_A          138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL  217 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence            9999999999999999998 6899999999999999988888777665432        235555555566666555554


Q ss_pred             hheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCC
Q 009130          206 SHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKL  285 (543)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (543)
                      .+.++.|..-..+++...+...+.                                            +...+       
T Consensus       218 ~~~peSp~~L~~~~~~~~a~~~l~--------------------------------------------~~~~~-------  246 (491)
T 4gc0_A          218 YTVPESPRWLMSRGKQEQAEGILR--------------------------------------------KIMGN-------  246 (491)
T ss_dssp             GGSCCCHHHHHHTTCHHHHHHHHH--------------------------------------------HHHHH-------
T ss_pred             hcCCCChHHHHHcCchhHHHHhHH--------------------------------------------HhcCC-------
Confidence            444433210000000000000000                                            00000       


Q ss_pred             CCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHH-HHhhhchhhhhhhchHHHHHhhCCCch
Q 009130          286 STPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIA-TLCGMGSGIATMNNIAQVGESLHYSTT  364 (543)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~-~~~~~~~~~~~~~~~~~~~~~~g~s~~  364 (543)
                                   +..+++.. ..++...+..+.......++.+........ .+........+..+.+.+.+..+.+..
T Consensus       247 -------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (491)
T 4gc0_A          247 -------------TLATQAVQ-EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTD  312 (491)
T ss_dssp             -------------HHHHHHHH-HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             -------------chhHHHHH-HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCcc
Confidence                         00000000 000000000111112233334444333333 333333344456666777788888888


Q ss_pred             hhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh----hcCcch-HHHHHHHHHhhhhh-
Q 009130          365 EINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA----SGFPGN-LFVGTMIVGVCYGS-  438 (543)
Q Consensus       365 ~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~----~~~~~~-~~~~~~l~G~~~g~-  438 (543)
                      +......+.++...++.++.+++.||+|||      +.+..+...+.++++.+.    ...... ..+..++...+++. 
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (491)
T 4gc0_A          313 IALLQTIIVGVINLTFTVLAIMTVDKFGRK------PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS  386 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSH------HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcCc------chhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence            887888888999999999999999999654      566666666665554433    122222 22222222222222 


Q ss_pred             hhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHH
Q 009130          439 QWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVA  518 (543)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~  518 (543)
                      ..+..+.+.+|.+|.+.|+++.|+....+.+++. +.+.+.+.+.+....      ....++...|++.+++++++.++.
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~-i~~~~~p~l~~~~~~------~~~~~~~~~~~i~~~~~~~~~i~~  459 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY-FVSWTFPMMDKNSWL------VAHFHNGFSYWIYGCMGVLAALFM  459 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH-HHHTHHHHHCHHHHH------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH------HhhhhhhHHHHHHHHHHHHHHHHH
Confidence            2345668899999999999999999988888885 666666665443210      000014467888899999999988


Q ss_pred             HHHhhcchhhhHHHHH
Q 009130          519 FLLFLRTRRFYNQVVI  534 (543)
Q Consensus       519 ~~~~~~~~~~~~~~~~  534 (543)
                      +++.+|+|++..++.+
T Consensus       460 ~~~~PETkg~tLeei~  475 (491)
T 4gc0_A          460 WKFVPETKGKTLEELE  475 (491)
T ss_dssp             HHHCCCCTTCCHHHHG
T ss_pred             HheecCCCCCCHHHHH
Confidence            8889999998887754

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=9e-29  Score=258.32  Aligned_cols=408  Identities=10%  Similarity=0.019  Sum_probs=260.2

Q ss_pred             ccccHHHHhh-----cCCChhhHHHHHHHhhhccc-ccchhhHhhhh-cccccccccccccccCCchHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKST-----QNYDQSTLERVAVFKDMGGS-AGILSGLLFSY-VTLNHHHHQTRTRFLRGPWVVHFTGAILCFTG  105 (543)
Q Consensus        33 ~~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~-~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g  105 (543)
                      +.+.++++++     +|++..+.+++.+.+.++.. .+++.|+++|| +|               ||+++..+.++.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g---------------~r~~~~~~~~~~~~~   98 (491)
T 4aps_A           34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIG---------------ARPAVFWGGVLIMLG   98 (491)
T ss_dssp             HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------chHHHHHHHHHHHHH
Confidence            3445566666     99999999988777777776 78899999999 89               999999999999999


Q ss_pred             HHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CC--CcchhHHHHHhhhhhHHHHHHHHHHhc
Q 009130          106 YFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HY--SGTIVGILKGFVGLSGAVLTQVYKTVC  182 (543)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~--rg~~~gi~~~~~~lg~~i~~~l~~~l~  182 (543)
                      .++     ++++++   ++.+++.|+++|+|.+...+....+++|++| ++  |+.++++...+.++|..++|.+++.+.
T Consensus        99 ~~~-----~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  170 (491)
T 4aps_A           99 HIV-----LALPFG---ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ  170 (491)
T ss_dssp             HHH-----HHSCCS---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHhhh---HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            999     777776   6889999999999999999999999999998 66  777888899999999999999999988


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHhheec-cCCC----Ccc---cchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 009130          183 NGNPSTYILVLALLPTLVSLLFMSHVRI-YGTN----SVD---DKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARI  254 (543)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (543)
                      +..+|++.+....+..+++.+...+..+ ..++    +.+   .++........+..                       
T Consensus       171 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----------------------  227 (491)
T 4aps_A          171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA-----------------------  227 (491)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCC-----------------------
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHH-----------------------
Confidence            7778988888776665555444333221 1110    000   00000000000000                       


Q ss_pred             HHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchh------cccc-cccchhhcchhHHHhhc
Q 009130          255 ITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVT------AAFD-DKILKDEEDMNLLQAMC  327 (543)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~  327 (543)
                       .....+....     ....+..+                    .++.....      .... .....+.......+..+
T Consensus       228 -l~~~~~~~~~-----~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (491)
T 4aps_A          228 -VAGFIAIIVV-----MNLVGWNS--------------------LPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLR  281 (491)
T ss_dssp             -CHHHHHHHHH-----HHHHSSCC--------------------TTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             -HHHHHHHHHH-----HHhccCcc--------------------cccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence             0000000000     00010000                    00000000      0000 00000000000111122


Q ss_pred             chhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHH
Q 009130          328 TGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVIT  406 (543)
Q Consensus       328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~  406 (543)
                      ....+.+.+..++...........++.+.++ .+.+..+.+...++..+...++.++.|++.||++||+. .+...+..+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~~~~~~  360 (491)
T 4aps_A          282 VVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPTKFAVG  360 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchHHHHHH
Confidence            2334444444444444444555667777765 47776778888889999999999999999999987642 223344455


Q ss_pred             HHHHHHHHHHHhh----------cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhh
Q 009130          407 LVAMSIGHIAIAS----------GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       407 ~~~~~i~~~~~~~----------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      .++..++++++..          .+.....+..++.|++.+...+....++.|.+|+++++++.|+.+....+|.. ++|
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-i~~  439 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA-LNA  439 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            6555555544331          13344566677888888888888899999999999999999999999999984 788


Q ss_pred             hhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 009130          477 RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLRTRR  527 (543)
Q Consensus       477 ~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~  527 (543)
                      .+.+.+.|. +            +...|.+.+++++++.++.+++.++.++
T Consensus       440 ~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          440 QLVTLYNAK-S------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             HHGGGGGGS-S------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHHHHhcc-c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888877664 2            6678888888877777776665544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.94  E-value=4.7e-28  Score=243.78  Aligned_cols=337  Identities=11%  Similarity=-0.021  Sum_probs=251.1

Q ss_pred             cccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHH
Q 009130           30 YTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFL  108 (543)
Q Consensus        30 ~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~  108 (543)
                      ..+....|.+.+++|.++.+.+++.+...++.. .+++.|++.||+|               ||+++..+.++.+++.++
T Consensus        17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g---------------~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A           17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVG---------------RRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSC---------------CCCCCHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHHHHHHHHHHHHH
Confidence            445666788999999999999988777777775 7889999999999               999999999999999998


Q ss_pred             HHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          109 VWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           .+++++   ++.+++.|+++|++.+...+....++.|++| ++|++++++...+.++|..+++.+++.+.+..+|
T Consensus        82 -----~~~~~~---~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  153 (375)
T 2gfp_A           82 -----AVTTSS---LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW  153 (375)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             -----HHHhcc---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence                 455554   7899999999999999999999999999997 7899999999999999999999998887655456


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ++.+....+..++..                                                               ..
T Consensus       154 ~~~~~~~~~~~~~~~---------------------------------------------------------------~~  170 (375)
T 2gfp_A          154 RACYLFLLVLCAGVT---------------------------------------------------------------FS  170 (375)
T ss_dssp             HHHHHHHHHHHHHHH---------------------------------------------------------------CC
T ss_pred             HHHHHHHHHHHHHHH---------------------------------------------------------------HH
Confidence            655544333222211                                                               11


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                      .....++++++++                  +           ++    +...+.++.+|+|.++...+..++.......
T Consensus       171 ~~~~~~~~~~~~~------------------~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (375)
T 2gfp_A          171 MARWMPETRPVDA------------------P-----------RT----RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAA  217 (375)
T ss_dssp             CCCSSCCCSTTTC------------------C-----------CC----CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCcccCCCCc------------------c-----------cc----cHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            1111111100000                  0           00    0011234667788899888888877777777


Q ss_pred             hhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHH-HHHHHH--HHhh---c
Q 009130          348 TMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVA-MSIGHI--AIAS---G  420 (543)
Q Consensus       348 ~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~-~~i~~~--~~~~---~  420 (543)
                      +..+.|.+.++ .|+++.+++...+...++..+++++.+++.||++++        +..+... ...+..  ....   .
T Consensus       218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
T 2gfp_A          218 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPDWFGVM  289 (375)
T ss_dssp             HHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--------HHHHHHHHHHTSSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhccc
Confidence            77788888877 799999999999999999999999999999998542        2222222 222211  1111   2


Q ss_pred             CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchh
Q 009130          421 FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCF  500 (543)
Q Consensus       421 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~  500 (543)
                      +....++..++.|++.+...+....++.|.+| ++++++.|+.+....+|.. ++|.+.|.+.|..+            |
T Consensus       290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~~~~~g~l~~~~~------------~  355 (375)
T 2gfp_A          290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VLASLSAMLPQTGQ------------G  355 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CCSTTCTHHHHHHH------------H
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HHHHHHHHHhcCCc------------c
Confidence            33445566778899999888999999999998 8999999999999999984 88889999887655            7


Q ss_pred             HHHHHHH
Q 009130          501 MLSFMIM  507 (543)
Q Consensus       501 ~~~f~~~  507 (543)
                      +..+++.
T Consensus       356 ~~~~~~~  362 (375)
T 2gfp_A          356 SLGLLMT  362 (375)
T ss_dssp             HHHHHHH
T ss_pred             cHHHHHH
Confidence            7776654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.92  E-value=1.1e-25  Score=229.90  Aligned_cols=366  Identities=12%  Similarity=0.014  Sum_probs=231.3

Q ss_pred             cccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHH
Q 009130           32 FSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVW  110 (543)
Q Consensus        32 ~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~  110 (543)
                      ++.+..++++++|+++.+.+++.+.+.++.. .+++.|+++||+|               ||+++.++.++++++...+.
T Consensus        27 ~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~G---------------rr~~l~~~~~~~~~~~~~~~   91 (417)
T 2cfq_A           27 FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG---------------LRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             TTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTST---------------TCCHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------chHHHHHHHHHHHHHHHHHH
Confidence            4455556788899999999977777666665 7889999999999               99999998887765332210


Q ss_pred             HHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC---CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          111 ASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG---HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp---~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                      .  ..+++..  ...+...+++.|++.+..++.......++.+   ++|+.+.|....+..+|.+++|.+++.+.+ ..|
T Consensus        92 ~--~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~  166 (417)
T 2cfq_A           92 I--FIFGPLL--QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INN  166 (417)
T ss_dssp             H--HTHHHHH--HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCS
T ss_pred             H--HHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hch
Confidence            0  1111100  0112345677777777766655555556654   356888888888889999999988887753 234


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      ++.+.+..++.++.++                                                            . . 
T Consensus       167 ~~~f~~~~~~~~~~~~------------------------------------------------------------~-~-  184 (417)
T 2cfq_A          167 QFVFWLGSGCALILAV------------------------------------------------------------L-L-  184 (417)
T ss_dssp             HHHHTTTTTTTTTHHH------------------------------------------------------------H-S-
T ss_pred             hHHHHHHHHHHHHHHH------------------------------------------------------------H-H-
Confidence            4433322221111000                                                            0 0 


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                        ...+++++++.   +    +       ++.++ +      +++   +......++.++++.+|...+..+........
T Consensus       185 --~~~~~~~~~~~---~----~-------~~~~~-~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T 2cfq_A          185 --FFAKTDAPSSA---T----V-------ANAVG-A------NHS---AFSLKLALELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             --CSSCCCCSCSS---C----S-------SSSSS-S------CCC---CCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHcCccccccc---c----c-------ccccc-c------ccc---cccHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence              00011100000   0    0       00000 0      000   00112346778899988777665544444444


Q ss_pred             hhhchHHHHHhh-C---CCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-cCc
Q 009130          348 TMNNIAQVGESL-H---YSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-GFP  422 (543)
Q Consensus       348 ~~~~~~~~~~~~-g---~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~~~  422 (543)
                      +..+.|.++++. +   .+....+...++..++..++.++.|+++||+++|      +.+..+.++.+++.+.+.. ++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~------~~l~~~~~~~~~~~~~~~~~~~~  312 (417)
T 2cfq_A          239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK------NALLLAGTIMSVRIIGSSFATSA  312 (417)
T ss_dssp             HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH------HHHHHHHHHHHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH------HHHHHHHHHHHHHHHHHHHhccH
Confidence            455677776553 2   2234556777788888899999999999999654      5666666666666555553 333


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHH-HhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhH
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTI-SIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFM  501 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~  501 (543)
                      ..+.+..++.+++.+...+....+++|.+|++.+++++|.. +....+|+ .++|.+.|.+.|..|            |+
T Consensus       313 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~-~~gp~l~G~l~~~~g------------~~  379 (417)
T 2cfq_A          313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IFMSVLAGNMYESIG------------FQ  379 (417)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH-HHHTHHHHTHHHHSH------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH-HHhhhhHHHHHHhcC------------cH
Confidence            44444555566666665666678999999999999999995 78888888 489999999998776            88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 009130          502 LSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       502 ~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      ..|.+.+++.+++.++.++..++
T Consensus       380 ~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          380 GAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcC
Confidence            89998888888887766554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.92  E-value=3.4e-24  Score=225.56  Aligned_cols=147  Identities=8%  Similarity=-0.033  Sum_probs=123.4

Q ss_pred             ccccHHHHhhcC------CChhhHHHHHHHhhhccc-ccchhhHhhhhc-ccccccccccccccCCchHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQN------YDQSTLERVAVFKDMGGS-AGILSGLLFSYV-TLNHHHHQTRTRFLRGPWVVHFTGAILCFT  104 (543)
Q Consensus        33 ~~~~~~l~~~~~------~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~-g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~  104 (543)
                      +.+.+++.+++|      ++..+.+++.+.+.++.. ..++.|+++||+ |               ||+++.++.++.++
T Consensus        33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g---------------~r~~~~~~~~~~~~   97 (524)
T 2xut_A           33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFG---------------KYNTILWLSLIYCV   97 (524)
T ss_dssp             HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSC---------------SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------chHHHHHHHHHHHH
Confidence            345567788899      999999977777777765 788999999999 9               99999999999999


Q ss_pred             HHHHHHHHHhccCC-CCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHH---HHHhhhhhHHHHHHHHH
Q 009130          105 GYFLVWASVVGLLP-RPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGI---LKGFVGLSGAVLTQVYK  179 (543)
Q Consensus       105 g~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi---~~~~~~lg~~i~~~l~~  179 (543)
                      +.++     .++++ +   ++.+++.|++.|++.+...+....+++|++| ++|+++.+.   ...+.++|.++++.+.+
T Consensus        98 ~~~~-----~~~~~~~---~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~  169 (524)
T 2xut_A           98 GHAF-----LAIFEHS---VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP  169 (524)
T ss_dssp             HHHH-----HHHTSSC---HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred             HHHH-----HHHhccc---HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988     66666 5   7889999999999999999999999999998 578877666   88999999999999988


Q ss_pred             HhcCCCchhHHHHHHHHHHHHHH
Q 009130          180 TVCNGNPSTYILVLALLPTLVSL  202 (543)
Q Consensus       180 ~l~~~~~~~~~~~~~~~~~~~~~  202 (543)
                      .+.+..+|++.+.+..+..+++.
T Consensus       170 ~l~~~~g~~~~f~~~~~~~~~~~  192 (524)
T 2xut_A          170 LLLKNFGAAVAFGIPGVLMFVAT  192 (524)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHHHHH
Confidence            88776778887776665544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.49  E-value=2.5e-13  Score=141.16  Aligned_cols=176  Identities=15%  Similarity=0.160  Sum_probs=145.8

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHHh------hCCCchhhHHHHHHHHHHHhhhccccccchhh-hhhhcCCCchH
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGES------LHYSTTEINSLISLWSIWNFFGRFGAGYGSDV-FLHKLGWARPI  401 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~-~~~~~~~~r~~  401 (543)
                      +.+|.+.+..++.....+....+++.++++      +|.+..+.+++.+.+.++..+++++.|+++|| +|||      +
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------P   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------H
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------H
Confidence            346666666666666666676777777754      79999999999999999999999999999999 8654      7


Q ss_pred             HHHHHHHHHHHHHHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcc--hhhHHHHHHhhhhhhhhhhhhhh
Q 009130          402 FMVITLVAMSIGHIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRH--MGTIFNTISIACPVGSYICSVRI  478 (543)
Q Consensus       402 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~ig~~i~~~~l  478 (543)
                      ++..+.++..++.++.. .++...+++..++.|++.+...+...+++.|.+|+++  ++.+.+..+....+|. +++|.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~  165 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA-FIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH-HHHHHH
Confidence            88888888888877776 4566778888999999999999999999999999988  7888888889999998 589999


Q ss_pred             hhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009130          479 IGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFL  523 (543)
Q Consensus       479 ~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~  523 (543)
                      .+.+.+..+            |+..|++.++..+++.++.++..+
T Consensus       166 ~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          166 VGAAQEAAG------------YHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             HHHHHHHSC------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999998876            999999988877777666555433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.48  E-value=1.1e-13  Score=142.00  Aligned_cols=178  Identities=16%  Similarity=0.104  Sum_probs=143.9

Q ss_pred             chhHHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHH
Q 009130          328 TGNFWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITL  407 (543)
Q Consensus       328 ~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~  407 (543)
                      .+.++..++..+........+...+|.+.+++ .++.+.+++.+.+.++..++.+++|+++||+|||      +++.++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHHHH
Confidence            34455555555555544455666678888889 9999999999999999999999999999999654      6788888


Q ss_pred             HHHHHHHHHHhh-----cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          408 VAMSIGHIAIAS-----GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       408 ~~~~i~~~~~~~-----~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      ++.+++.++...     ++...+++..++.|++.+...+...+++.|.+|+++|+.+.|+......+|. +++|.+.+.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l  178 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            888777766543     4566788889999999999999999999999999999999999999999998 5889888888


Q ss_pred             hhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          483 YDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       483 ~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      .+..++           |+..|++.+++.++..++.++..++
T Consensus       179 ~~~~g~-----------w~~~f~~~~~~~~~~~~~~~~~~~~  209 (451)
T 1pw4_A          179 MAWFND-----------WHAALYMPAFCAILVALFAFAMMRD  209 (451)
T ss_dssp             HHHTCC-----------STTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHhcc-----------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence            776642           8899999888877776665555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.47  E-value=3.4e-13  Score=137.87  Aligned_cols=183  Identities=14%  Similarity=0.080  Sum_probs=137.6

Q ss_pred             HHHHHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHH
Q 009130          331 FWFLCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAM  410 (543)
Q Consensus       331 f~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~  410 (543)
                      +..+++.++.............|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||      +.+..+.++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~  101 (438)
T 3o7q_A           28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLY  101 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHH
Confidence            3344444444443344455667888888999999999999999999999999999999999654      6788888888


Q ss_pred             HHHHHHH---h-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhh-hh
Q 009130          411 SIGHIAI---A-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIY-DR  485 (543)
Q Consensus       411 ~i~~~~~---~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~-~~  485 (543)
                      +++.++.   . .++.+.+++..++.|++.+...+...+++.|.+|+++|+.+.|+.+....+|. +++|.+.+.+. +.
T Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA-IIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH-HHHHHHTTHHHHTS
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Confidence            8877766   4 45667788889999999999999999999999999999999999999999998 48888888887 43


Q ss_pred             ccCCCCc-------------cccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          486 VASGEDH-------------TCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       486 ~g~~~~~-------------~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                      .+...+.             ......+|++.|++.++..++..++.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3210000             0000112888888777766665555444

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.39  E-value=3e-12  Score=134.12  Aligned_cols=173  Identities=13%  Similarity=0.157  Sum_probs=139.2

Q ss_pred             hhHHHHHHHHHhhhchhhhhhhchHHHHH-hhC------CCchhhHHHHHHHHHHHhhhccccccchhhh-hhhcCCCch
Q 009130          329 GNFWFLCIATLCGMGSGIATMNNIAQVGE-SLH------YSTTEINSLISLWSIWNFFGRFGAGYGSDVF-LHKLGWARP  400 (543)
Q Consensus       329 ~~f~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g------~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~-~~~~~~~r~  400 (543)
                      +.+|.+.+..++.....+....+++.+++ ++|      +++.+.+++.+.+.++..++.++.|+++||+ |||      
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r------   85 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY------   85 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence            45666666666666666677777777765 578      9999999999999999999999999999999 765      


Q ss_pred             HHHHHHHHHHHHHHHHHh-hc-CcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHH---HHhhhhhhhhhhh
Q 009130          401 IFMVITLVAMSIGHIAIA-SG-FPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNT---ISIACPVGSYICS  475 (543)
Q Consensus       401 ~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~ig~~i~~  475 (543)
                      +++..+.++..++.++.. .. +...+++..++.|++.+...+...+++.|.+|+++++++.+.   ......+|. .++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~-~~g  164 (524)
T 2xut_A           86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS-FFA  164 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH-HHH
Confidence            567777777777776665 44 566677788899999999999999999999999999776665   788888888 488


Q ss_pred             hhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 009130          476 VRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFL  520 (543)
Q Consensus       476 ~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  520 (543)
                      |.+.+.+.+..+            |+..|++.+++.+++.++.++
T Consensus       165 ~~~~~~l~~~~g------------~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          165 SLSMPLLLKNFG------------AAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHTSTHHHHTSC------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcccc------------HHHHHHHHHHHHHHHHHHHHH
Confidence            889999988776            999999888877766655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.35  E-value=1e-12  Score=131.47  Aligned_cols=172  Identities=9%  Similarity=0.105  Sum_probs=136.7

Q ss_pred             HHHHHHhhhchhhhhhhchHHHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHH
Q 009130          334 LCIATLCGMGSGIATMNNIAQVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIG  413 (543)
Q Consensus       334 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~  413 (543)
                      +++..++.......+...+|.+.+++|.|+++.++..+...++..++.++.|+++||+|||      +.+..+.++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r------~~~~~~~~~~~~~   78 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR------PVILVGMSIFMLA   78 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC------CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------hhHHHHHHHHHHH
Confidence            3344444444444556667888888999999999999999999999999999999999765      4566677777776


Q ss_pred             HHHHh-hcCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCc
Q 009130          414 HIAIA-SGFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDH  492 (543)
Q Consensus       414 ~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~  492 (543)
                      .++.. .++...+++..++.|++.+...+...+++.|.+|+|+|+++.+.......+|. +++|.+.+.+.+..+     
T Consensus        79 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~-----  152 (375)
T 2gfp_A           79 TLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP-LLAPLIGGLLDTMWN-----  152 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH-HHHHHHHHHSSCHHH-----
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcc-----
Confidence            66555 44566677788899999999999999999999999999999999999999998 589999999988776     


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          493 TCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       493 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                             |+..|++.++..++..+...+..+|
T Consensus       153 -------~~~~~~~~~~~~~~~~~~~~~~~~~  177 (375)
T 2gfp_A          153 -------WRACYLFLLVLCAGVTFSMARWMPE  177 (375)
T ss_dssp             -------HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence                   9999998887777666543333333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.94  E-value=5.1e-09  Score=108.41  Aligned_cols=112  Identities=19%  Similarity=0.161  Sum_probs=91.7

Q ss_pred             hhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-------------------hcCcch
Q 009130          364 TEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-------------------SGFPGN  424 (543)
Q Consensus       364 ~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-------------------~~~~~~  424 (543)
                      .+.+++.+.+.++.++|.+++|+++||+|||      +.+.++.++..++.++.+                   .++...
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~  128 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRR------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE  128 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence            4567788889999999999999999999654      788888888888776654                   234456


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhh
Q 009130          425 LFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRI  482 (543)
Q Consensus       425 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l  482 (543)
                      +++..++.|++.|+..+..+.+++|..|+++|+...+.......+|.. .++.+....
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~-~~~~~~~~~  185 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL-LVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh-hhhhcchhh
Confidence            788999999999999999999999999999999999999888888773 555444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.89  E-value=1.4e-10  Score=117.85  Aligned_cols=171  Identities=14%  Similarity=0.127  Sum_probs=110.6

Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      +.+|+|++|......++..........++|.++++ .|+|+.+.+.+.+...++..++++++|+++||+|||      +.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr------~~   75 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR------KY   75 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTC------CH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------HH
Confidence            35789999988887777666656667788888865 799999999999999999999999999999999765      44


Q ss_pred             HHHHHHHHHHH---HHHHhh-cCc-chHHHHHHHHHhhhhhhhhhHHHHHHhhcCC--cchhhHHHHHHhhhhhhhhhhh
Q 009130          403 MVITLVAMSIG---HIAIAS-GFP-GNLFVGTMIVGVCYGSQWSLMPTITSEIFGV--RHMGTIFNTISIACPVGSYICS  475 (543)
Q Consensus       403 ~~~~~~~~~i~---~~~~~~-~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~ig~~i~~  475 (543)
                      +..+.++..+.   ...... ... ........+.+++.+..++.....+.+..++  ++++.++|.......+|. .++
T Consensus        76 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~  154 (417)
T 2cfq_A           76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW-ALG  154 (417)
T ss_dssp             HHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHH
Confidence            55444443321   111111 000 0112223333443333332222222232222  456777888888888887 488


Q ss_pred             hhhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHH
Q 009130          476 VRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFG  514 (543)
Q Consensus       476 ~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~  514 (543)
                      |.+.+++.+. +            |+..|++.++..++.
T Consensus       155 ~~l~~~l~~~-~------------~~~~f~~~~~~~~~~  180 (417)
T 2cfq_A          155 ASIVGIMFTI-N------------NQFVFWLGSGCALIL  180 (417)
T ss_dssp             HHHHHHHHHH-C------------SHHHHTTTTTTTTTH
T ss_pred             HHHHHHHHHh-c------------hhHHHHHHHHHHHHH
Confidence            8888988874 4            788888766554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	543
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.41
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-34  Score=293.09  Aligned_cols=405  Identities=14%  Similarity=0.132  Sum_probs=282.2

Q ss_pred             chhhHHHHHHHHHHHHHcC-CccccccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhccccccccccccc
Q 009130            9 TNSKWIATVASIWIQCSVG-TTYTFSIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTR   86 (543)
Q Consensus         9 ~~~~w~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~   86 (543)
                      +++||.+++.+++...... ....+++..|.++ |+|+|.+|++++.+.+.++.. .+++.|+++||+|           
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g-----------   87 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSN-----------   87 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-----------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence            4557887766555443322 3346777888876 589999999988888888876 6889999999999           


Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC-CCCcchhHHHHH
Q 009130           87 FLRGPWVVHFTGAILCFTGYFLVWASVVGLLPRPVPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG-HYSGTIVGILKG  165 (543)
Q Consensus        87 ~~~g~r~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp-~~rg~~~gi~~~  165 (543)
                          ||+++.++.++.+++.++.+... ...++   ++.+++.|++.|++.+..++....++++++| ++|++++++...
T Consensus        88 ----~r~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~  159 (447)
T d1pw4a_          88 ----PRVFLPAGLILAAAVMLFMGFVP-WATSS---IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC  159 (447)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHCH-HHHSS---SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             ----chHHHHHHHHHHHHHHhhccccc-hhhhh---HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccccccccccc
Confidence                99999999999999998833211 01123   6889999999999999999999999999998 579999999999


Q ss_pred             hhhhhHHHHHHHHHHhcC-CCchhHHHHHHHHHH-HHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHh
Q 009130          166 FVGLSGAVLTQVYKTVCN-GNPSTYILVLALLPT-LVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVME  243 (543)
Q Consensus       166 ~~~lg~~i~~~l~~~l~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (543)
                      +.++|.++++.+...... ..+|++.+....+.. +..++...+.++.|                               
T Consensus       160 ~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  208 (447)
T d1pw4a_         160 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP-------------------------------  208 (447)
T ss_dssp             HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS-------------------------------
T ss_pred             ccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch-------------------------------
Confidence            999999999888776653 345555544433322 22222222222221                               


Q ss_pred             hcccchhhHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHH
Q 009130          244 NLLTFSLWARIITFIILLLLLASPLRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLL  323 (543)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (543)
                                                       ++... ++.++.+.+      +.++.+     ++.+++....+...+
T Consensus       209 ---------------------------------~~~~~-~~~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~  243 (447)
T d1pw4a_         209 ---------------------------------QSCGL-PPIEEYKND------YPDDYN-----EKAEQELTAKQIFMQ  243 (447)
T ss_dssp             ---------------------------------TTTCC-CSCTTTCCC------------------------CCTHHHHH
T ss_pred             ---------------------------------hhccc-chhhhhhhh------cccchh-----hccccccchhhHHHH
Confidence                                             11110 000000000      000000     001111112223456


Q ss_pred             HhhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHH
Q 009130          324 QAMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIF  402 (543)
Q Consensus       324 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~  402 (543)
                      +.++++.+|......++.....+....+.+.++++ .+++..+.+....+..+...+++++.|+++||++++   .+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  320 (447)
T d1pw4a_         244 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG---NRGAT  320 (447)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT---CHHHH
T ss_pred             HHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccc---ccccc
Confidence            78899999999988888877777888888888865 589999999999999999999999999999999765   33333


Q ss_pred             HHHHHHHHHHHHHHHhh---cCcchHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhh
Q 009130          403 MVITLVAMSIGHIAIAS---GFPGNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRII  479 (543)
Q Consensus       403 ~~~~~~~~~i~~~~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~  479 (543)
                      ......+..++...+..   .+.....+..++.|++.++..+....++.|.+|++.+|++.|+.+....+++.+.+|.+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~  400 (447)
T d1pw4a_         321 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  400 (447)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333221   233445556667788888878888889999999999999999998887776556788899


Q ss_pred             hhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009130          480 GRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLFLR  524 (543)
Q Consensus       480 g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~  524 (543)
                      |++.|..|            |+..|++.+++.+++.++.+++..+
T Consensus       401 g~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         401 GYTVDFFG------------WDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHSSC------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC------------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999987            8889988888888877776665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.2e-25  Score=218.82  Aligned_cols=369  Identities=10%  Similarity=-0.019  Sum_probs=237.4

Q ss_pred             ccccHHHHhhcCCChhhHHHHHHHhhhccc-ccchhhHhhhhcccccccccccccccCCchHHHHHHHHHHHHHHHHHHH
Q 009130           33 SIYSSTLKSTQNYDQSTLERVAVFKDMGGS-AGILSGLLFSYVTLNHHHHQTRTRFLRGPWVVHFTGAILCFTGYFLVWA  111 (543)
Q Consensus        33 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-~~~~~G~l~d~~g~~~~~~~~~~~~~~g~r~~~~~g~~~~~~g~~~~~~  111 (543)
                      +.+..++++++|+|++|++++.+...++.. .+++.|.++||+|               ||+++.++.++..++..++.+
T Consensus        28 ~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~g---------------rr~~l~~~~~~~~~~~~~~~~   92 (417)
T d1pv7a_          28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLG---------------LRKYLLWIITGMLVMFAPFFI   92 (417)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT---------------TCTHHHHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------chHHHHHHHHHHHHHHHHHHH
Confidence            344445788899999999988777777775 7889999999999               999999999888888877332


Q ss_pred             HHhccCCCC-ChHHHHHHHHHHHhcCcchhhhhHHHHHhhhcC---CCCcchhHHHHHhhhhhHHHHHHHHHHhcCCCch
Q 009130          112 SVVGLLPRP-VPVPLMCLFIFTAAHAQNFFNTGNIVTGVMNFG---HYSGTIVGILKGFVGLSGAVLTQVYKTVCNGNPS  187 (543)
Q Consensus       112 ~~~~~~~~~-~~~~~~~~~r~l~G~g~g~~~~~~~~~~~~~fp---~~rg~~~gi~~~~~~lg~~i~~~l~~~l~~~~~~  187 (543)
                           ..+. ......+..+.+.+.+.+...........+..+   +++....+......+.+..+++.+++.+.+..++
T Consensus        93 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  167 (417)
T d1pv7a_          93 -----FIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQ  167 (417)
T ss_dssp             -----HTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             -----hhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccccccc
Confidence                 2220 001223456667777666666655555444442   2466777888888888888888877776544333


Q ss_pred             hHHHHHHHHHHHHHHHHHhheeccCCCCcccchhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcc
Q 009130          188 TYILVLALLPTLVSLLFMSHVRIYGTNSVDDKKHLNAFSAVAMTLAAYFMVITVMENLLTFSLWARIITFIILLLLLASP  267 (543)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (543)
                      +..........+..++.....+                                                          
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  189 (417)
T d1pv7a_         168 FVFWLGSGCALILAVLLFFAKT----------------------------------------------------------  189 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCC----------------------------------------------------------
T ss_pred             ccccchhhHHHHHHHHHHHHhc----------------------------------------------------------
Confidence            3333333322222211111111                                                          


Q ss_pred             cccccccccccccCCCCCCCCCCCCCCccccCCCccchhcccccccchhhcchhHHHhhcchhHHHHHHHHHhhhchhhh
Q 009130          268 LRVAITADREDAMTSPKLSTPQQDPLAYHELADDESKVTAAFDDKILKDEEDMNLLQAMCTGNFWFLCIATLCGMGSGIA  347 (543)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~  347 (543)
                            +++++.+                   +++++      +++.++.......+..+++..+...............
T Consensus       190 ------~~~~~~~-------------------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T d1pv7a_         190 ------DAPSSAT-------------------VANAV------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             ------CSCSSSC-------------------SSHHH------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             ------ccccchh-------------------hhhhh------hhhcccccccccccccccccccchhhhhHHHHHHHHh
Confidence                  1110000                   00000      0000011112223334444444444333333222222


Q ss_pred             hhhchHHHHH----hhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHh-hcCc
Q 009130          348 TMNNIAQVGE----SLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIA-SGFP  422 (543)
Q Consensus       348 ~~~~~~~~~~----~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~-~~~~  422 (543)
                      .....+.+..    +.+.+....+.......++..++..+.+++.||.++      ++.+..+.++..++.+.+. .++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~  312 (417)
T d1pv7a_         239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG------KNALLLAGTIMSVRIIGSSFATSA  312 (417)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred             hhccccccccccccccccchhhhcccccccccccccchhhhhhhhccccc------ccchhhhHHHHHHhhhcccccccc
Confidence            2222222222    224455667777788888999999999999999954      4677777777777777666 4556


Q ss_pred             chHHHHHHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHH-HhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhH
Q 009130          423 GNLFVGTMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTI-SIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFM  501 (543)
Q Consensus       423 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~  501 (543)
                      ...++..++.|++.+...+...+++.|.+|+++++++.|+. ++...+|. .++|.+.|++.|..|            |+
T Consensus       313 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~i~~~~~G~l~~~~g------------~~  379 (417)
T d1pv7a_         313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM-IFMSVLAGNMYESIG------------FQ  379 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHH-HHHHHHHHHHHHHHC------------HH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC------------HH
Confidence            66777788889999999999999999999999999999986 56677887 488999999999987            99


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 009130          502 LSFMIMAFVAFFGSLVAFLLFLRTRRFY  529 (543)
Q Consensus       502 ~~f~~~~~~~~~~~i~~~~~~~~~~~~~  529 (543)
                      ..|++.+++.++..++.++..+++++..
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~  407 (417)
T d1pv7a_         380 GAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence            9999999888888888777766554443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.4e-13  Score=135.40  Aligned_cols=153  Identities=18%  Similarity=0.154  Sum_probs=126.2

Q ss_pred             HHHHhhCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHhh-----cCcchHHHH
Q 009130          354 QVGESLHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFMVITLVAMSIGHIAIAS-----GFPGNLFVG  428 (543)
Q Consensus       354 ~~~~~~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~  428 (543)
                      ++.++.|+|.++.+++.+.+.++..++.+++|+++||+|||      +++..+.++..++.++.+.     .+...+++.
T Consensus        49 p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (447)
T d1pw4a_          49 PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL  122 (447)
T ss_dssp             HHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHH
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch------HHHHHHHHHHHHHHhhccccchhhhhHHHHHHH
Confidence            34567899999999999999999999999999999999654      6787888877777665542     355677888


Q ss_pred             HHHHHhhhhhhhhhHHHHHHhhcCCcchhhHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCCccccccchhHHHHHHHH
Q 009130          429 TMIVGVCYGSQWSLMPTITSEIFGVRHMGTIFNTISIACPVGSYICSVRIIGRIYDRVASGEDHTCYGTHCFMLSFMIMA  508 (543)
Q Consensus       429 ~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ig~~i~~~~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~  508 (543)
                      .++.|++.+...+....++.|.+|+++|+++.|+.+.+..+|. +++|.+.+.+.+..+.           |+..|++.+
T Consensus       123 ~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~~~~~~~~-----------w~~~~~~~~  190 (447)
T d1pw4a_         123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGG-GIPPLLFLLGMAWFND-----------WHAALYMPA  190 (447)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHH-TSHHHHHHHHHHHTCC-----------STTCTHHHH
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhh-hhhhhhhhhHhhhhhc-----------ccccchhhh
Confidence            8899999999999999999999999999999999999999998 4788778877776653           888888888


Q ss_pred             HHHHHHHHHHHHHhhc
Q 009130          509 FVAFFGSLVAFLLFLR  524 (543)
Q Consensus       509 ~~~~~~~i~~~~~~~~  524 (543)
                      .+.++..++.+...++
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (447)
T d1pw4a_         191 FCAILVALFAFAMMRD  206 (447)
T ss_dssp             HHHHHHHHHHHHHCCC
T ss_pred             hhHHHHHHHHHHhccc
Confidence            7777776666665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.9e-10  Score=112.84  Aligned_cols=178  Identities=15%  Similarity=0.138  Sum_probs=110.9

Q ss_pred             hhcchhHHHHHHHHHhhhchhhhhhhchHHHHHh-hCCCchhhHHHHHHHHHHHhhhccccccchhhhhhhcCCCchHHH
Q 009130          325 AMCTGNFWFLCIATLCGMGSGIATMNNIAQVGES-LHYSTTEINSLISLWSIWNFFGRFGAGYGSDVFLHKLGWARPIFM  403 (543)
Q Consensus       325 ~~~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~ig~~~~G~lsD~~~~~~~~~r~~~~  403 (543)
                      .+|||++|.+.+..++...........+|.++++ .|.|+++.+++.++..++..++.++.|+++||+|||      +.+
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr------~~l   76 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR------KYL   76 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC------THH
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------HHH
Confidence            4789999999998888766666666777877754 799999999999999999999999999999999765      455


Q ss_pred             HHHHHHHHHHHHHHh-hcCc----chHHHHHHHHHhhhhhhhhhHHHHHHhhcCC--cchhhHHHHHHhhhhhhhhhhhh
Q 009130          404 VITLVAMSIGHIAIA-SGFP----GNLFVGTMIVGVCYGSQWSLMPTITSEIFGV--RHMGTIFNTISIACPVGSYICSV  476 (543)
Q Consensus       404 ~~~~~~~~i~~~~~~-~~~~----~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~ig~~i~~~  476 (543)
                      .++.+...++..++. ..+.    ....+...+.+.+.+...........+..++  +++....+........+. .++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  155 (417)
T d1pv7a_          77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW-ALGA  155 (417)
T ss_dssp             HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccc-cccc
Confidence            556555555544433 1111    1223333344444444333333333222222  233445555555555665 4677


Q ss_pred             hhhhhhhhhccCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 009130          477 RIIGRIYDRVASGEDHTCYGTHCFMLSFMIMAFVAFFGSLVAFLLF  522 (543)
Q Consensus       477 ~l~g~l~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~  522 (543)
                      .+.+.+.+..             ++..+........+..++.++..
T Consensus       156 ~~~~~l~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~  188 (417)
T d1pv7a_         156 SIVGIMFTIN-------------NQFVFWLGSGCALILAVLLFFAK  188 (417)
T ss_dssp             HHHHHHHHHC-------------HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccccccccc-------------ccccccchhhHHHHHHHHHHHHh
Confidence            7777777764             44455555444444444444433