Citrus Sinensis ID: 009136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540--
Protein Sequence
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Secondary Structure (PSIPRED)
cHHHHHHcccccEEEccccccccccHHHHHccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHcccccccccccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccEEEccccccccccHHHcccccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccHHccccccccccHHHHccccccEEcccccccccccHHHHccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccEEEccccccccccHHHHcccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHccccccEEEEccccccccccHHHcccccccEEEccccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHccccccccEEEccccccccccHHHcccccHHHHHHccccccccccccccccccccccHHHccccccEEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccHHccc
Coil and Loop (DISEMBL)
MDRILKAARtsgslnlsnrslrdvpnevyknfdeagegdkwwEAVDLQKLILAHNNIEKLKEDlrnlplltVLNVSHNKLSELPAAIGELHMlksldvsfnsimkipdeigSATALVkfdcssnqlkelpsslgrclnlsdfkasnncitslpedladcskmskldvegnkltVLSNNLIASWTMLTELIASKnllngmpetIGSLSRLIRLDLhqnrilsipssisgcCSLAefymgnnalsALPAElgklsklgtldlhSNQLKEYCVEACQLRLSVLDlsnnslsglppeigkMTTLRKLLLtgnplrtlrsslvngptpALLKYLRSrlpenedseasttkEDLITMATRLSVTSKELslegmnlsaipseiweageitkldlsrnsiqelppelsscASLQTLILSRnkikdwpdAILTSLsslsclkldnnplrqvpsdgfkdipmlqiLDLSyniaslpenppfsslphLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKnltslteldlsdnnisalppelvsv
Flexible Loop (DISEMBL)
mdrilkaartsgslnlsnrslrdvpnEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRtlrsslvngptPALLKYLRsrlpenedseasttkedlitMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLteldlsdnnisalppelvsv
Low Complexity Region (SEG)
MDRILKAARTSGslnlsnrslrDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQlrlsvldlsnnslsglPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIltslsslsclklDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTdilrlqqlrildlSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Disordered region (IsUnstruct)
***************************VYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL*************************************MNLSAIPSEIWEAGEITKLDL***********LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQ************************************
Disordered Region (DISOPRED)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT**DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Disordered Region (DISEMBL)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL**********TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Disordered Region (DISPRO)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDxxxxxxxxxxxxxxxxxxxxxPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	542	2.2.26 [Sep-21-2011]
Q5ZLN0	603	Leucine-rich repeat-conta	yes	no	0.933	0.839	0.336	6e-64
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	no	0.935	0.838	0.333	5e-61
Q5M8G4	605	Leucine-rich repeat-conta	yes	no	0.961	0.861	0.342	6e-60
Q5RFE9	602	Leucine-rich repeat-conta	yes	no	0.937	0.843	0.336	2e-59
Q9H9A6	602	Leucine-rich repeat-conta	yes	no	0.937	0.843	0.334	5e-59
Q4R3P6	602	Leucine-rich repeat-conta	N/A	no	0.937	0.843	0.334	2e-58
Q7SXW3	601	Leucine-rich repeat-conta	yes	no	0.937	0.845	0.323	4e-57
Q9CRC8	602	Leucine-rich repeat-conta	yes	no	0.937	0.843	0.320	3e-53
Q8AVI4	577	Leucine-rich repeat prote	N/A	no	0.697	0.655	0.300	5e-36
Q1L8Y7	561	Leucine-rich repeat prote	no	no	0.697	0.673	0.305	4e-35

>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1

 Score =  245 bits (626), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 298/562 (53%), Gaps = 56/562 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +++AAR SG LNL+ R L +VP  V++ N D   EA      G  D+WWE  DL KLILA
Sbjct: 31  LIRAARKSGQLNLAGRGLGEVPQHVWRINLDTPEEAHQNLSFGAADRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N +  L ED+R LP LTVL+V  N+L+ LP+A+G+L  L+ LDVS N +  IP+E+   
Sbjct: 91  SNQLRCLSEDVRLLPALTVLDVHDNQLTSLPSALGQLENLQKLDVSHNKLKSIPEELLQL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           + L       N+L  LP   G+ ++L +   SNN +T +P+  A    + +L++  N+L 
Sbjct: 151 SHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNNHLTDIPKSFALLINLVRLNLACNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L  + I++   L +L  +KN L  +P  + S++ L +L L +N++ S+P  +  C  L 
Sbjct: 211 DLPAD-ISAMKSLRQLDCTKNYLESVPSELASMASLEQLYLRKNKLRSLP-ELPSCKLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLP 291
           E + G N +  L AE L  L+ L  L+L  N++K    E   L +L  LDL+NN +S LP
Sbjct: 269 ELHAGENQIEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISRLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G ++ L+ L L GNPLRT+R  L+   T  LLKYLRSR+   +D +AS  +E  +T 
Sbjct: 329 YTLGNLSQLKFLALEGNPLRTIRRDLLQKGTQELLKYLRSRI---QDDKASPNEEPPVTA 385

Query: 352 AT-----RLSV----TSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPEL 399
            T     R+++    T K L      ++ IP +++ A     +T ++ S+N +  +PP +
Sbjct: 386 MTLPSESRINMHAITTLKLLDYSEKQVAVIPDDVFSAVRSNPVTSVNFSKNQLTAIPPRI 445

Query: 400 SSCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                S+  +    NKI       L +L  L+ L + NN L  +P +  + +  LQ+++L
Sbjct: 446 VELKDSVCDVNFGFNKISSV-SLELCTLHKLTHLDIRNNVLTSLPEE-MEALTRLQVINL 503

Query: 459 SYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFK 517
           S+N                       + +  P+ + R+  L  + LS N + SI P   K
Sbjct: 504 SFN-----------------------RFKVFPSVLYRMLALETILLSNNQVGSIDPLQLK 540

Query: 518 NLTSLTELDLSDNNISALPPEL 539
            +  L  LDL +N++  +PPEL
Sbjct: 541 KMEQLGTLDLQNNDLLQVPPEL 562

Gallus gallus (taxid: 9031)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score =  236 bits (601), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 283/563 (50%), Gaps = 56/563 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L +VP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTEVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N+++ LP AI EL  L+ L++S N I ++P+E+   
Sbjct: 91  SNKLQALSEDISLLPALVVLDIHDNQIASLPCAIRELTNLQKLNISHNKIKQLPNELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L  F    NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLRQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L+ L  LDLSNN +  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPKEISLLKGLERLDLSNNDIGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL--PENEDSEASTTKEDLI 349
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+  P+    EA+   +  +
Sbjct: 329 DTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKYLKGRVQTPDMTTQEAANPPDTAM 388

Query: 350 TMAT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELS 400
           T+ +         +T K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSDSVINAHAIMTLKTLEYCEKQASLIPEAVFNAAASSPITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI        +S+S   C+ L                  L  LD+ 
Sbjct: 449 EMKDSVYDVNLGFNKI--------SSISLNLCMLLK-----------------LTHLDMR 483

Query: 460 YN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSI-PEGF 516
            N +ASLP  P   +L  LQ + L   + +  P  +  +  L  + +S N + SI P   
Sbjct: 484 NNALASLP--PEMEALTRLQSIILSFNRFKHFPDVLYTIPNLETILISSNQIGSIDPIQL 541

Query: 517 KNLTSLTELDLSDNNISALPPEL 539
           K +T L+ LDL +N++  +PP L
Sbjct: 542 KKMTKLSTLDLQNNDLLQIPPAL 564

Xenopus laevis (taxid: 8355)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score =  232 bits (591), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 277/554 (50%), Gaps = 33/554 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L DVP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTDVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N++  LP AI EL  L+ L++S N I ++P E+   
Sbjct: 91  SNKLQLLSEDISLLPALVVLDIHDNQIVSLPCAIKELTNLQKLNISHNKIKQLPKELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSISSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLKQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L  L  LDLSNN L  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSNNDLGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL-------PENEDSEAST- 343
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+        E+E+S A+  
Sbjct: 329 CTLGSLPNLKSLQLEGNPLRGIRRDILNKGTQELLKYLKGRVQVPDVKTQEDENSTATAM 388

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPELS 400
           T      + T   VT K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSESVVNTHAIVTLKTLEYCEKQASLIPEAVFNATGSSFITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI       L  L  L+ + + NN L  +PS+  + +  LQ + LS
Sbjct: 449 EMKDSVCDVNLGFNKISSI-SLNLCMLLKLTHIDMRNNVLTSLPSE-MEAMTRLQSVILS 506

Query: 460 YN-IASLPENPPFSSLPHLQELYLRMQLREA--PTDILRLQQLRILDLSQNSLQSIPEGF 516
           +N     P+      +P L+ + +      +  PT ++++ +L  LDL  N L  IP   
Sbjct: 507 FNRFKHFPD--VLYRIPTLETILISSNQIGSIDPTQLIKMTKLSTLDLQNNDLLQIPPAL 564

Query: 517 KNLTSLTELDLSDN 530
            N  SL  L L  N
Sbjct: 565 GNCESLRALHLEGN 578

Xenopus tropicalis (taxid: 8364)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score =  231 bits (588), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 188/559 (33%), Positives = 295/559 (52%), Gaps = 51/559 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELQNLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQFSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 AT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +      R  +T K L       + IP E+++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIRAIITLKILDYSDKQATLIPDEVFDAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-VESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
                    F  LP +  LY             R+  L  + +S N + S+ P+  K + 
Sbjct: 506 --------RFKMLPEV--LY-------------RIFTLETILISNNQVGSVDPQKMKMME 542

Query: 521 SLTELDLSDNNISALPPEL 539
           +LT LDL +N++  +PPEL
Sbjct: 543 NLTTLDLQNNDLLQIPPEL 561

Pongo abelii (taxid: 9601)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score =  229 bits (583), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 294/559 (52%), Gaps = 51/559 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   LR L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  +++  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E+++A +   +T ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVDLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
                    F  LP +  LY             R+  L  + +S N + S+ P+  K + 
Sbjct: 506 --------RFKMLPEV--LY-------------RIFTLETILISNNQVGSVDPQKMKMME 542

Query: 521 SLTELDLSDNNISALPPEL 539
           +LT LDL +N++  +PPEL
Sbjct: 543 NLTTLDLQNNDLLQIPPEL 561

Homo sapiens (taxid: 9606)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score =  227 bits (578), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 187/559 (33%), Positives = 292/559 (52%), Gaps = 51/559 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+A+ EL  L+ L+VS N +   P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAMRELENLQKLNVSHNKLKIFPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESAAETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E++ A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFNAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCMLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
                    F  LP +  LY             R+  L  + +S N + S+ P+  K + 
Sbjct: 506 --------RFKMLPEV--LY-------------RIFTLETILISNNQVGSVDPQKMKMME 542

Query: 521 SLTELDLSDNNISALPPEL 539
           +LT LDL +N++  +PPEL
Sbjct: 543 NLTTLDLQNNDLLQIPPEL 561

Macaca fascicularis (taxid: 9541)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score =  223 bits (567), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 181/560 (32%), Positives = 285/560 (50%), Gaps = 52/560 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R L +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct: 29  LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct: 89  SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct: 149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct: 209 SLP-PAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLP-ELPCCKTLK 266

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E + GNN +  L AE L  L+ L  L+L  N++K    E   L+ L  LDL+NN +S LP
Sbjct: 267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct: 327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P      
Sbjct: 387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVP------ 440

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
                     ++I D  D       SL+ + L  N L  +P+D F  +  L  +DL  N 
Sbjct: 441 ----------HRIVDLKD-------SLADINLGFNKLTTIPAD-FCHLKQLMHIDLRNNL 482

Query: 462 IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNL 519
           + SLP       L  L+ + L   + +  P  + R+  L  + +S N +  I     K L
Sbjct: 483 LISLPME--LEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQMKTL 540

Query: 520 TSLTELDLSDNNISALPPEL 539
           + L+ LDLS+N+I  +PPEL
Sbjct: 541 SRLSTLDLSNNDIMQVPPEL 560

Danio rerio (taxid: 7955)

>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2

 Score =  210 bits (534), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 179/559 (32%), Positives = 286/559 (51%), Gaps = 51/559 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
           +LKAAR+SG LNL+ R+L +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct: 31  LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct: 91  SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct: 151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P     C  L 
Sbjct: 211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLP-EFPSCRQLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++  N +  L AE L  L  +  LDL  N+L+    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct: 329 CSLGNL-HLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +   I LS NK+  +    L  L  L+ L L NN L  +P +    +  LQ ++LS+N
Sbjct: 448 KEMVLDINLSFNKLS-FISHELCLLQKLTFLDLRNNFLSSLPEE-MSSLTKLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
                                  + +  P  + R+  L  + +S N + S+ P+  K + 
Sbjct: 506 -----------------------RFKVFPEVLYRISTLEAVLISNNQVGSVDPQKMKLME 542

Query: 521 SLTELDLSDNNISALPPEL 539
           +L  LDL +N++  +PPEL
Sbjct: 543 NLNTLDLQNNDLLQIPPEL 561

Mus musculus (taxid: 10090)

>sp|Q8AVI4|SHOC2_XENLA Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1

 Score =  152 bits (385), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 210/436 (48%), Gaps = 58/436 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++DL+ LP LT+L
Sbjct: 169 LDLRHNKLREIPPVVYR-------------LSSLTTLFLRFNRITAVEKDLKMLPKLTML 215

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+  LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N+L +LP ++
Sbjct: 216 SIRENKIKHLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTI 275

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P  L+ CS++ +L++E N ++ L   L++S   +  L  ++
Sbjct: 276 GNLSSLSRLGLRYNRLSAVPRSLSKCSELDELNLENNNISTLPEGLLSSLVKVNSLTLAR 335

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 336 NCFQSYP--VGGPSQFSSIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 393

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  + VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 394 GTWTSMVELNLATNQLTKIPEDVSGLVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 453

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 454 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 477

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLS 427
           L+ +P  I     +T L L  N +  LP E+ +  +L+ L L+ N  +   P   L   S
Sbjct: 478 LTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFE-LALCS 536

Query: 428 SLSCLKLDNNPLRQVP 443
            LS + ++N PL  +P
Sbjct: 537 KLSIMSIENCPLSHLP 552

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Xenopus laevis (taxid: 8355)

>sp|Q1L8Y7|SHOC2_DANRE Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1

 Score =  149 bits (377), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 213/436 (48%), Gaps = 58/436 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++D++NL  LT+L
Sbjct: 153 LDLRHNKLREIPAVVYR-------------VSSLTTLYLRFNRITTVEKDIKNLSKLTML 199

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+ +LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N L +LP ++
Sbjct: 200 SIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNDLLDLPETI 259

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +++      N ++++P  LA C ++ +L++E N ++VL   L++S   LT L  ++
Sbjct: 260 GNLASINRLGLRYNRLSAIPRSLAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLAR 319

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 320 NCFQSYP--VGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 377

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   + C L  L +L LSNN L  LP  IG +  LR+L L  N
Sbjct: 378 GTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLSNNLLKKLPYGIGNLRKLRELDLEEN 437

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 438 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 461

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLS 427
           L+ +P  I     +T L L  N +Q LP E+ +  +L+ L L+ N  +   P   L   S
Sbjct: 462 LTTLPRGIGHLTNLTYLGLGENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFE-LALCS 520

Query: 428 SLSCLKLDNNPLRQVP 443
            LS + ++N PL  +P
Sbjct: 521 KLSIMSIENCPLSHLP 536

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
224114980	580	predicted protein [Populus trichocarpa]	0.987	0.922	0.778	0.0
255575336	571	leucine-rich repeat-containing protein,	0.992	0.942	0.761	0.0
359493861	584	PREDICTED: leucine-rich repeat-containin	0.994	0.922	0.768	0.0
225461397	588	PREDICTED: leucine-rich repeat-containin	0.994	0.916	0.755	0.0
356549743	583	PREDICTED: leucine-rich repeat-containin	0.994	0.924	0.761	0.0
449431828	583	PREDICTED: leucine-rich repeat-containin	0.981	0.912	0.750	0.0
356544024	586	PREDICTED: leucine-rich repeat-containin	0.985	0.911	0.759	0.0
30683597	584	leucine-rich repeat-containing protein [	0.994	0.922	0.720	0.0
297830120	584	leucine-rich repeat family protein [Arab	0.994	0.922	0.720	0.0
7021726	562	unknown protein [Arabidopsis thaliana]	0.994	0.959	0.720	0.0

>gi|224114980|ref|XP_002316909.1| predicted protein [Populus trichocarpa] gi|222859974|gb|EEE97521.1| predicted protein [Populus trichocarpa]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/541 (77%), Positives = 469/541 (86%), Gaps = 6/541 (1%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAAR+SGSLNLSNRSL +VP+EVYK  D  GEG+KWWE V+LQKLILAHNNIE +
Sbjct: 1   MDRVLKAARSSGSLNLSNRSLSEVPDEVYKILDAVGEGEKWWENVELQKLILAHNNIEAI 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDL+NL  LTVLNVSHNKLS LPAAIGEL MLK LDVSFN I K+PDEIGSAT+LVKFD
Sbjct: 61  KEDLKNLSQLTVLNVSHNKLSALPAAIGELPMLKLLDVSFNLIQKVPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQL+ELPSSLG CL LSD KASNN ITSLPEDLA CSK++K+DVEGNKL VLS NL+
Sbjct: 121 CSSNQLRELPSSLGGCLALSDLKASNNSITSLPEDLARCSKLTKVDVEGNKLKVLSGNLM 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTE  ASKNLL+ +P+  GSLSRLIRLDLHQNRI +IP SI GCCSLAEFYMGNN
Sbjct: 181 ASWTMLTEFNASKNLLSDIPDNFGSLSRLIRLDLHQNRISTIPPSIMGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ALS LPAE+G LS+LGTLDLHSNQLKE   EAC+L+LS+LDLSNNSL+GLPPE+GKMTTL
Sbjct: 241 ALSTLPAEIGALSRLGTLDLHSNQLKEIPAEACKLQLSMLDLSNNSLTGLPPELGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLL GNPLRTLRSSLV+GPT  LL YLRSRL E EDS+A+T  K+DLI+M  RLSV+S
Sbjct: 301 RKLLLNGNPLRTLRSSLVSGPTATLLNYLRSRLSEGEDSKATTPAKKDLISMTARLSVSS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSL+G+ LSA+PSE+WE+ EI K+DLSRNSIQELP ELS C     LILSRNKI DWP
Sbjct: 361 KELSLQGLGLSAVPSEVWESNEIVKVDLSRNSIQELPLELSLCC----LILSRNKISDWP 416

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNN L Q+PSDGF+ +PMLQILDLS N ASL  +P FSSLPHL+E
Sbjct: 417 CAILKSLPNLICLKLDNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKE 476

Query: 480 LYLR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYLR +QLRE P+DIL LQQL+IL+LSQNSL SIPEG KNLTSLTELDLSDNNISALPPE
Sbjct: 477 LYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPEGLKNLTSLTELDLSDNNISALPPE 536

Query: 539 L 539
           L
Sbjct: 537 L 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575336|ref|XP_002528571.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223532015|gb|EEF33826.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/541 (76%), Positives = 475/541 (87%), Gaps = 3/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAARTSGSLNLSNRSLR + +EVY++ D AGEG+KWWE V+LQKLILAHN+IE L
Sbjct: 1   MDRVLKAARTSGSLNLSNRSLRQL-HEVYRSSDAAGEGEKWWETVELQKLILAHNSIESL 59

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLR LP LTVLNVS+NKL+ LPAAIGEL +LKSLDVSFN I  +PDEIGSAT+LVKFD
Sbjct: 60  KEDLRLLPQLTVLNVSNNKLTALPAAIGELSLLKSLDVSFNMIQTVPDEIGSATSLVKFD 119

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQLKELP S+GRCL+LS+ K SNN ITS PEDLA C K++K+DVEGNKL   S NL+
Sbjct: 120 CSSNQLKELPGSVGRCLDLSELKVSNNLITSFPEDLAKCLKLTKVDVEGNKLQTFSENLM 179

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKNLL  +P+ +GSLSRLIRLD HQN+I SIP SI GCCSL EFYMGNN
Sbjct: 180 ASWTMLTELNASKNLLTCIPDNVGSLSRLIRLDFHQNKISSIPPSIKGCCSLLEFYMGNN 239

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS LPAE+G++S+L TLDLHSNQLKE+ VE C+L LSVLDLSNNSLSGLP EIG+MTTL
Sbjct: 240 LLSTLPAEIGEVSRLATLDLHSNQLKEFPVEGCKLHLSVLDLSNNSLSGLPLEIGRMTTL 299

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLLTGNPLRT+RSSLV+GPTPALL+YLRSRL E EDSEA+T  ++D+I MA+RLS+++
Sbjct: 300 RKLLLTGNPLRTIRSSLVSGPTPALLRYLRSRLSEGEDSEANTPPRKDVIAMASRLSIST 359

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KEL L G+ LSA+PSE+WE+GEI K+DLS+NSIQ+LP ELSSC SLQTLILS+NKI++WP
Sbjct: 360 KELFLVGLGLSAVPSEVWESGEIVKVDLSKNSIQKLPVELSSCVSLQTLILSKNKIQEWP 419

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SLS+LSCLKLDNNPLRQ+P DGF+ + MLQILDLS N AS+ E PPFS LPHLQE
Sbjct: 420 GAILKSLSNLSCLKLDNNPLRQIPLDGFQAVSMLQILDLSGNPASVCELPPFSKLPHLQE 479

Query: 480 LYLR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYLR +QL E P+DIL L QLRILDLS+NSLQSIPEGFK+LTSLTELDLSDN+I+ALPPE
Sbjct: 480 LYLRHVQLHEVPSDILSLLQLRILDLSRNSLQSIPEGFKSLTSLTELDLSDNSIAALPPE 539

Query: 539 L 539
           L
Sbjct: 540 L 540

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493861|ref|XP_003634682.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 2 [Vitis vinifera] gi|302143032|emb|CBI20327.3| unnamed protein product [Vitis vinifera]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/541 (76%), Positives = 479/541 (88%), Gaps = 2/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT-KEDLITMATRLSVTS 359
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +EDSEA+TT KE+++TMA R+S+TS
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSEAATTAKENVVTMAARISITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI++WP
Sbjct: 361 KELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKIQEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
             IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP LQE
Sbjct: 421 GVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLPQLQE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL RMQL E P+DIL LQQL+ILDLSQNSLQ IPEGFKNLTSLTEL+LSDN+I+ LPPE
Sbjct: 481 LYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIATLPPE 540

Query: 539 L 539
           L
Sbjct: 541 L 541

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461397|ref|XP_002284846.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 1 [Vitis vinifera]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/545 (75%), Positives = 476/545 (87%), Gaps = 6/545 (1%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED-----SEASTTKEDLITMATRL 355
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +E      + A+T KE+++TMA R+
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEGVFLFFTSATTAKENVVTMAARI 360

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           S+TSKELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI
Sbjct: 361 SITSKELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKI 420

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           ++WP  IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP
Sbjct: 421 QEWPGVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLP 480

Query: 476 HLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534
            LQELYL RMQL E P+DIL LQQL+ILDLSQNSLQ IPEGFKNLTSLTEL+LSDN+I+ 
Sbjct: 481 QLQELYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIAT 540

Query: 535 LPPEL 539
           LPPEL
Sbjct: 541 LPPEL 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549743|ref|XP_003543250.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/540 (76%), Positives = 474/540 (87%), Gaps = 1/540 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL ++P+EVY+N +  G  DKWWEA +LQKLILAHN+I  L
Sbjct: 1   MDRILKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGDDKWWEAAELQKLILAHNSIASL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLRNLP L+VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+KIP+EIGSA +LVK D
Sbjct: 61  KEDLRNLPFLSVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVKIPEEIGSAVSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+L ELPSSLGRCL LSD K SNN IT+LPEDLA+CSK+SKLD+EGN+LTV+S NLI
Sbjct: 121 CSNNRLTELPSSLGRCLELSDLKGSNNLITNLPEDLANCSKLSKLDMEGNRLTVMSENLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           +SWTMLTE  +SKNLLNG+P +IG LSRLIRLDLHQNRI +IPSSI GC SL E Y+GNN
Sbjct: 181 SSWTMLTEFNSSKNLLNGIPTSIGGLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTTL
Sbjct: 241 NISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
           RKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++ITMATRLS++SK
Sbjct: 301 RKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVITMATRLSISSK 360

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
           ELS+E + LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IKDWP 
Sbjct: 361 ELSMEELGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPG 420

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL 480
           +IL SLSSLSCLKLDNNPLRQ+PSDGF+ +P LQILDLS N ASL + P FSSLP+LQEL
Sbjct: 421 SILKSLSSLSCLKLDNNPLRQIPSDGFEMVPKLQILDLSGNAASLLDGPAFSSLPYLQEL 480

Query: 481 YL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
           YL RM+L E P+DI+ L QLRILDLSQNSLQSIP G K LTSL ELDLS+NNI+ LPPEL
Sbjct: 481 YLRRMRLSEVPSDIVGLHQLRILDLSQNSLQSIPVGLKALTSLQELDLSNNNIAVLPPEL 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431828|ref|XP_004133702.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus] gi|449478165|ref|XP_004155239.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus]

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/534 (75%), Positives = 460/534 (86%), Gaps = 2/534 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL DVP+EVY++ D     +KWWEAV+LQKLILAHNNI+ L
Sbjct: 1   MDRILKAARASGSLNLSNRSLSDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
            E+LRNL  L VLNVSHNKLSELPAAIGEL  LK LDVSFNS+M+IPDEIGSAT+LVKFD
Sbjct: 61  SEELRNLSSLAVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN L+ELP  LGRC +LSD KASNN I+SLP +LA+CSK++KLD+EGNKL V+S NLI
Sbjct: 121 CSSNHLQELPGGLGRCSDLSDLKASNNSISSLPVELANCSKLTKLDMEGNKLKVISKNLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWT+LTEL ASKNLLN +PE IGSL RLIRL++ QN+I SIP SI  CC+LAE YMGNN
Sbjct: 181 ASWTLLTELNASKNLLNELPENIGSLLRLIRLNVFQNKISSIPPSIKDCCALAELYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ++S LP E+G LS LGTLDLHSNQLKEY VEAC+L L VLDLSNNSLSGLPPEIGKMTTL
Sbjct: 241 SVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPPEIGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE-DLITMATRLSVTS 359
           RKLLLTGNP+RTLRSSLV+GPTPALL++LRSRLPENE  EAS+T+  D+ITMA R+S+TS
Sbjct: 301 RKLLLTGNPIRTLRSSLVSGPTPALLRFLRSRLPENEGPEASSTQRGDVITMAARMSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG  LSA+PSE+WE+ E+ KLDLS+NS QELP ELSSC SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGQGLSAVPSEVWESSELMKLDLSKNSFQELPVELSSCTSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL +L +L+CLKLDNNPL+Q+PSDGF+ +  LQ+LDLS NIA LPE+P FSSLP LQE
Sbjct: 421 GAILKTLPNLTCLKLDNNPLKQIPSDGFQAVSKLQVLDLSGNIACLPEHPTFSSLPLLQE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 532
           LYL RM+L E P+ IL L+ +RILDLSQNS+Q +PE  KNL +LTELDLSDNNI
Sbjct: 481 LYLRRMRLHEVPSSILGLKHMRILDLSQNSIQLVPEELKNLAALTELDLSDNNI 534

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544024|ref|XP_003540456.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/536 (75%), Positives = 469/536 (87%), Gaps = 2/536 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGD-KWWEAVDLQKLILAHNNIEK 59
           MDR+LKAAR SGSLNLSNRSL ++P+EVY+N +  G GD KWWEAV+LQKLILAHN+I  
Sbjct: 1   MDRLLKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGGDDKWWEAVELQKLILAHNSIAS 60

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119
           LKEDLRNLP L VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+ IP+EIGSA +LVK 
Sbjct: 61  LKEDLRNLPFLAVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVNIPEEIGSAMSLVKL 120

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+NQL ELPSSLGRCL LSD K SNN ITSLPEDLA+CSK+SKLD+EGNKLTV+S NL
Sbjct: 121 DCSNNQLTELPSSLGRCLELSDLKGSNNLITSLPEDLANCSKLSKLDMEGNKLTVISENL 180

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
           I+SWTMLTE  ASKNLLNG+P +IG LSRLIR+ +HQNRI +IPSSI GC SL E Y+GN
Sbjct: 181 ISSWTMLTEFNASKNLLNGIPTSIGGLSRLIRVYVHQNRISAIPSSIIGCHSLTELYLGN 240

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTT
Sbjct: 241 NNISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTT 300

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           LRKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++I MATRLS+TS
Sbjct: 301 LRKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVIAMATRLSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELS+EG+ LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IK+WP
Sbjct: 361 KELSMEGLGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            +IL SLSSLSCLKLDNNPL+Q+P DGF+ +P LQILDLS N ASL + P FSSLP+LQE
Sbjct: 421 GSILKSLSSLSCLKLDNNPLKQIPLDGFEVVPKLQILDLSGNAASLLDVPAFSSLPYLQE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534
           LYL RM+L E P+DI+ LQQLRILDLSQNSLQSIP G K+LTSL ELDLS+NNIS 
Sbjct: 481 LYLRRMRLSEVPSDIVGLQQLRILDLSQNSLQSIPVGLKDLTSLKELDLSNNNISV 536

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683597|ref|NP_188160.2| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|21703129|gb|AAM74505.1| AT3g15410/MJK13_7 [Arabidopsis thaliana] gi|24111377|gb|AAN46812.1| At3g15410/MJK13_7 [Arabidopsis thaliana] gi|332642149|gb|AEE75670.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/541 (72%), Positives = 457/541 (84%), Gaps = 2/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  LQILDLS N  S  E+P F  LP L+E
Sbjct: 421 GAILKSLPNLMCLKLDNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+G KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKGIKNMTSLKHLDISNNNISSLPPE 540

Query: 539 L 539
           L
Sbjct: 541 L 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830120|ref|XP_002882942.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328782|gb|EFH59201.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/541 (72%), Positives = 458/541 (84%), Gaps = 2/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+I  L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPIEVYQCLETTGEGENWWEAVDLQKLILAHNDIAVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHN LS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNNLSQLPAAIGELTAMKSLDVSFNSITELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+ KELP S+GRCL+LSD KASNN I+SLPED+ +CSK+SKLDVEGN+LT LS N I
Sbjct: 121 CSSNRFKELPESIGRCLDLSDLKASNNQISSLPEDMVNCSKLSKLDVEGNRLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKN+L+G+P+ IGSLSRLIRLDLHQN+ILS+P SI  C SL EFY+G N
Sbjct: 181 ASWTMLTELNASKNMLSGLPQNIGSLSRLIRLDLHQNKILSVPPSIGDCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLSA+PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSAVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  L+ILDLS N  S  E+P F  LP LQE
Sbjct: 421 GAILKSLPNLVCLKLDNNPLTQIPLDGFQAVSGLRILDLSGNAVSFREHPKFCHLPQLQE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+  KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKSIKNMTSLKHLDISNNNISSLPPE 540

Query: 539 L 539
           L
Sbjct: 541 L 541

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7021726|gb|AAF35407.1| unknown protein [Arabidopsis thaliana]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/541 (72%), Positives = 457/541 (84%), Gaps = 2/541 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  LQILDLS N  S  E+P F  LP L+E
Sbjct: 421 GAILKSLPNLMCLKLDNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRE 480

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+G KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKGIKNMTSLKHLDISNNNISSLPPE 540

Query: 539 L 539
           L
Sbjct: 541 L 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	542
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.937	0.845	0.287	9.5e-50
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.937	0.843	0.295	1.1e-48
UNIPROTKB|E1BU15	582	SHOC2 "Leucine-rich repeat pro	0.677	0.630	0.303	7.2e-36
WB|WBGene00004929	559	soc-2 [Caenorhabditis elegans	0.765	0.742	0.284	7.4e-36
UNIPROTKB|Q22875	559	soc-2 "Leucine-rich repeat pro	0.765	0.742	0.284	7.4e-36
DICTYBASE|DDB_G0294094	510	lrrA "leucine-rich repeat-cont	0.741	0.788	0.303	5.1e-35
ZFIN|ZDB-GENE-050208-523	561	shoc2 "soc-2 suppressor of cle	0.667	0.645	0.301	1.2e-34
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.651	0.505	0.296	4.6e-34
UNIPROTKB|O61967	699	let-413 "Protein lap1" [Caenor	0.651	0.505	0.296	4.6e-34
RGD|1308146	582	Shoc2 "soc-2 (suppressor of cl	0.667	0.621	0.299	8.5e-34

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 161/560 (28%), Positives = 258/560 (46%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
             +LKAAR SG          +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct:    29 LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct:    89 SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct:   149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct:   209 SLPP-AISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLPE-LPCCKTLK 266

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E + GNN +  L AE L  L+ L  L+L  N++K    E                    P
Sbjct:   267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct:   327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query:   352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P      
Sbjct:   387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVP------ 440

Query:   403 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
                       ++I D  D++              N L  +P+D F  +  L  +DL  N+
Sbjct:   441 ----------HRIVDLKDSLADINLGF-------NKLTTIPAD-FCHLKQLMHIDLRNNL 482

Query:   463 A-SLPENPPFSSLPHLQELYLRM-QLREAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNL 519
               SLP       L  L+ + L   + +  P              S N +  I     K L
Sbjct:   483 LISLPME--LEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQMKTL 540

Query:   520 TSLTELDLSDNNISALPPEL 539
             + L+ LDLS+N+I  +PPEL
Sbjct:   541 SRLSTLDLSNNDIMQVPPEL 560

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 165/559 (29%), Positives = 266/559 (47%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
             +LKAAR+SG          +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct:    31 LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct:    91 SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
               L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct:   151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P   S C  L 
Sbjct:   211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPS-CRQLK 268

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E ++  N +  L AE L  L  +  LDL  N+L+    E A                  P
Sbjct:   269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct:   329 CSLGNLH-LKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query:   352 AT--RLSV----TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              +  R+++    T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct:   388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query:   403 ASLQTLI-LSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               +   I LS NK+      +             NN L  +P +    +  LQ ++LS+N
Sbjct:   448 KEMVLDINLSFNKLSFISHELCLLQKLTFLDLR-NNFLSSLPEE-MSSLTKLQTINLSFN 505

Query:   462 IASLPENPPFSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLT 520
                      F   P +  LY R+   EA               S N + S+ P+  K + 
Sbjct:   506 --------RFKVFPEV--LY-RISTLEA------------VLISNNQVGSVDPQKMKLME 542

Query:   521 SLTELDLSDNNISALPPEL 539
             +L  LDL +N++  +PPEL
Sbjct:   543 NLNTLDLQNNDLLQIPPEL 561

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BU15 SHOC2 "Leucine-rich repeat protein SHOC-2" [Gallus gallus (taxid:9031)]

 Score = 389 (142.0 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 117/386 (30%), Positives = 190/386 (49%)

Query:    42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             +    L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N
Sbjct:   189 YRLTSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHN 248

Query:   102 SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161
              +  +P+EIGS T +   D   N+L +LP ++G   +LS      N ++++P+ LA CS+
Sbjct:   249 QLEHLPEEIGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIPKSLAKCSE 308

Query:   162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRIL 220
             + +L++E N ++ L   L++S   LT L  ++N     P    S  S +  L++  NRI 
Sbjct:   309 LDELNLENNNISTLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRIN 368

Query:   221 SIPSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXX 279
              IP  I S    L++  M +N L++LP + G  + +  L+L +NQL +   +        
Sbjct:   369 KIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLE 428

Query:   280 XXXXXXXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                         P  IG +  LR+L L  N L +L + +      A LK L+  +  N  
Sbjct:   429 VLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQ 482

Query:   339 SEASTTKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELP 396
                 TT    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP
Sbjct:   483 L---TTLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLP 534

Query:   397 PELSSCASLQTLILSRNKIKDWPDAI 422
              EL+ C+ L  + +    +   P  I
Sbjct:   535 FELALCSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

WB|WBGene00004929 soc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 387 (141.3 bits), Expect = 7.4e-36, P = 7.4e-36
 Identities = 131/460 (28%), Positives = 213/460 (46%)

Query:    43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
             + V+L+KL L+ N +  L + L +L  L  L++ HNKL+E+P+ I ++  L++L + +N 
Sbjct:   117 QLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETLWLRYNR 176

Query:   103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             I+ + ++IG+ + L   D   N+++ELPS++G+  +L     S N +T +PE++ DC  +
Sbjct:   177 IVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSL 236

Query:   163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             ++LD++ N L+ L                        P +IG L  L+R+ +  N+I  I
Sbjct:   237 TQLDLQHNDLSEL------------------------PYSIGKLVNLVRIGIRYNKIRCI 272

Query:   223 PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQXXXXXXX 281
             PS +  C  L EF + +N L  LP  L   L K+ T++L  N+L  +     Q       
Sbjct:   273 PSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTAFPAGGPQQFVSTVT 332

Query:   282 XXXXXXXXXPPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE-NE 337
                         IG   K T L KL L  N L +L   + +  +   L    ++L    E
Sbjct:   333 INMEHNQISKIPIGIFSKATRLTKLNLKENELVSLPLDMGSWTSITELNLSTNQLKVLPE 392

Query:   338 DSEASTTKEDLITMATRLSVTS---------KELSLEGMNLSAIPSEIWEAGEITKLDLS 388
             D E     E L+    +L             +EL LE   L  +P+EI     +TKL + 
Sbjct:   393 DIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQ 452

Query:   389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
              N I  LP  + +  SLQ L L  N +   P+ I            DN+ L  +P   F 
Sbjct:   453 SNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLP---F- 508

Query:   449 DIPMLQILDL-SYNIASLPENPPFSSL--PHLQELYLRMQ 485
             ++ + Q L++ S   + L + PP  +   P L   YL+MQ
Sbjct:   509 ELALCQSLEIMSIENSPLSQIPPEITAGGPSLVIQYLKMQ 548

GO:0002119 "nematode larval development" evidence=IMP

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0007517 "muscle organ development" evidence=IMP

GO:0031344 "regulation of cell projection organization" evidence=IMP

UNIPROTKB|Q22875 soc-2 "Leucine-rich repeat protein soc-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 387 (141.3 bits), Expect = 7.4e-36, P = 7.4e-36
 Identities = 131/460 (28%), Positives = 213/460 (46%)

Query:    43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS 102
             + V+L+KL L+ N +  L + L +L  L  L++ HNKL+E+P+ I ++  L++L + +N 
Sbjct:   117 QLVNLKKLGLSENALTSLPDSLASLESLETLDLRHNKLTEVPSVIYKIGSLETLWLRYNR 176

Query:   103 IMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             I+ + ++IG+ + L   D   N+++ELPS++G+  +L     S N +T +PE++ DC  +
Sbjct:   177 IVAVDEQIGNLSKLKMLDVRENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSL 236

Query:   163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             ++LD++ N L+ L                        P +IG L  L+R+ +  N+I  I
Sbjct:   237 TQLDLQHNDLSEL------------------------PYSIGKLVNLVRIGIRYNKIRCI 272

Query:   223 PSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQXXXXXXX 281
             PS +  C  L EF + +N L  LP  L   L K+ T++L  N+L  +     Q       
Sbjct:   273 PSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTAFPAGGPQQFVSTVT 332

Query:   282 XXXXXXXXXPPEIG---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE-NE 337
                         IG   K T L KL L  N L +L   + +  +   L    ++L    E
Sbjct:   333 INMEHNQISKIPIGIFSKATRLTKLNLKENELVSLPLDMGSWTSITELNLSTNQLKVLPE 392

Query:   338 DSEASTTKEDLITMATRLSVTS---------KELSLEGMNLSAIPSEIWEAGEITKLDLS 388
             D E     E L+    +L             +EL LE   L  +P+EI     +TKL + 
Sbjct:   393 DIEKLVNLEILVLSNNQLKKLPNQIGNLNKLRELDLEENELETVPTEIGFLQHLTKLWVQ 452

Query:   389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
              N I  LP  + +  SLQ L L  N +   P+ I            DN+ L  +P   F 
Sbjct:   453 SNKILTLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSLKSLYLNDNSSLHNLP---F- 508

Query:   449 DIPMLQILDL-SYNIASLPENPPFSSL--PHLQELYLRMQ 485
             ++ + Q L++ S   + L + PP  +   P L   YL+MQ
Sbjct:   509 ELALCQSLEIMSIENSPLSQIPPEITAGGPSLVIQYLKMQ 548

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

DICTYBASE|DDB_G0294094 lrrA "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 128/422 (30%), Positives = 190/422 (45%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA--IGELHMLKSLDVSFNSIMKIPDEI 110
             A N I  +  ++ +L  L  L +S+NKL   P    IG L  L  LD+S N +  +P EI
Sbjct:    68 AKNRINYIPPEIGSLATLKQLFLSNNKLFYTPITPNIGALKNLTRLDLSSNQLDDLPVEI 127

Query:   111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
              +  AL   D S NQL+  P   G+  NL  F  S N + SLP +++   K+ +L+V  N
Sbjct:   128 SNCEALEYLDISDNQLQSFPLEFGKLYNLQVFNCSKNSLKSLPSEISGWVKLEELNVSNN 187

Query:   171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
             +L  L N  I    +L+ L    N L  +PE + S+  L  LDL  N  L     +S   
Sbjct:   188 QLAFLPNQ-ICLLGLLSTLNVGFNKLQQLPEELSSMVSLTNLDLKVNPPLQYVPQLSNLR 246

Query:   231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSN-QLKEYCVE-ACQXXXXXXXXXXXXXX 288
              L    + N  ++ LP  LG LS+L  LD+  N QLKE   + A                
Sbjct:   247 QLKILSIRNLQITHLPLGLGLLSELIELDIRDNPQLKEIPYDIATLINLQKLDLFGNNMR 306

Query:   289 XXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP-ALLKYLRSRLPENEDSEASTTKED 347
               P E+G +  L+ L L  N L     ++ N P+    L  L+  L  N    A     +
Sbjct:   307 IVPREVGNLINLQTLDLRQNKL-----TIDNIPSEIGKLVNLKKLLLSNNLLIA--LPPE 359

Query:   348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
             + +M        KE       L AIP+EI E   +TK++LS N +  +P    + + LQ 
Sbjct:   360 IASMKAL-----KEFEASNNQLQAIPTEIGELSGLTKINLSGNKLTSIPASFGNLSELQI 414

Query:   408 LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
               L  N+I + P  +             +N L ++P + F D+  L ILD+ +N  ++P 
Sbjct:   415 CDLKSNEIAELPTTLDGLKSCTKIDLS-HNMLTELPWE-FGDLIGLTILDVGHNPLTIPP 472

Query:   468 NP 469
             NP
Sbjct:   473 NP 474

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0043326 "chemotaxis to folate" evidence=IMP

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050208-523 shoc2 "soc-2 suppressor of clear homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 377 (137.8 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 115/381 (30%), Positives = 185/381 (48%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   173 LTTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 232

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N L +LP ++G   +++      N ++++P  LA C ++ +L+
Sbjct:   233 PKEIGNCTQITNLDLQHNDLLDLPETIGNLASINRLGLRYNRLSAIPRSLAKCRELEELN 292

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++VL   L++S   LT L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   293 LENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFG 352

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   + C           
Sbjct:   353 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLS 412

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  IG +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   413 NNLLKKLPYGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 463

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL   +P EI     +  L L+ N ++  LP EL+ 
Sbjct:   464 TLPRGIGHLTNLTY----LGL-GENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELAL 518

Query:   402 CASLQTLILSRNKIKDWPDAI 422
             C+ L  + +    +   P  I
Sbjct:   519 CSKLSIMSIENCPLSHLPPQI 539

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|O61967 let-413 "Protein lap1" [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0045108 "regulation of intermediate filament polymerization or depolymerization" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEP

GO:0015031 "protein transport" evidence=IEP

GO:0005912 "adherens junction" evidence=IDA

RGD|1308146 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 371 (135.7 bits), Expect = 8.5e-34, P = 8.5e-34
 Identities = 114/381 (29%), Positives = 186/381 (48%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D+RNLP L+ L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   194 LTTLYLRFNRITAVEKDVRNLPRLSTLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 253

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N+L +LP ++G   +L+      N ++++P  LA CS + +L+
Sbjct:   254 PKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALEELN 313

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++ L  +L++S   L  L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   314 LENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFG 373

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   +             
Sbjct:   374 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILS 433

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  +G +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   434 NNLLKKLPHGLGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 484

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP EL+ 
Sbjct:   485 TLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELAL 539

Query:   402 CASLQTLILSRNKIKDWPDAI 422
             C+ L  + +    +   P  I
Sbjct:   540 CSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CRC8	LRC40_MOUSE	No assigned EC number	0.3202	0.9372	0.8438	yes	no
Q9H9A6	LRC40_HUMAN	No assigned EC number	0.3345	0.9372	0.8438	yes	no
Q5M8G4	LRC40_XENTR	No assigned EC number	0.3429	0.9612	0.8611	yes	no
Q5ZLN0	LRC40_CHICK	No assigned EC number	0.3362	0.9335	0.8391	yes	no
Q5RFE9	LRC40_PONAB	No assigned EC number	0.3363	0.9372	0.8438	yes	no
Q7SXW3	LRC40_DANRE	No assigned EC number	0.3232	0.9372	0.8452	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110941	hypothetical protein (581 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.8595.1.1	hypothetical protein (375 aa)			•						0.490
	eugene3.00410223	hypothetical protein (478 aa)			•						0.488
	eugene3.00131095	annotation not avaliable (394 aa)			•						0.484
	eugene3.00190610	annotation not avaliable (370 aa)			•						0.483
	fgenesh4_pg.C_LG_XVIII001032	hypothetical protein (534 aa)			•						0.478
	eugene3.100750001	hypothetical protein (275 aa)			•						0.478
	fgenesh4_pg.C_scaffold_11988000001	hypothetical protein (315 aa)			•						0.455
	fgenesh4_pg.C_scaffold_13412000001	hypothetical protein (444 aa)			•						0.453
	eugene3.06320001	hypothetical protein (344 aa)			•						0.450
	gw1.XI.3221.1	hypothetical protein (380 aa)			•						0.445

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	542
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-18
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-15
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-15
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-13
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	4e-11
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	4e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	4e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	6e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  116 bits (292), Expect = 2e-27
 Identities = 148/488 (30%), Positives = 220/488 (45%), Gaps = 54/488 (11%)

Query: 67  LPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN 124
           +P L  L++S+N LS E+P  IG    LK LD+  N ++ KIP+ + + T+L     +SN
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 125 QL-KELPSSLGRCLNLS-DFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           QL  ++P  LG+  +L   +   NN    +P ++   + ++ LD+  N LT    + + +
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM-GN 239
              L  L   +N L+G +P +I SL +LI LDL  N +   IP  +    +L   ++  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVE--ACQLRLSVLDLSNNSLSG-LPPEIGK 296
           N    +P  L  L +L  L L SN+      +       L+VLDLS N+L+G +P  +  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS----RLPENEDSEASTTKEDLITMA 352
              L KL+L  N L         G  P  L   RS    RL +N  S       +L +  
Sbjct: 379 SGNLFKLILFSNSL--------EGEIPKSLGACRSLRRVRLQDNSFSG------ELPSEF 424

Query: 353 TRLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
           T+L +    L +   NL   I S  W+   +  L L+RN      P+      L+ L LS
Sbjct: 425 TKLPLVYF-LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           RN+        L SLS L  LKL  N L     D       L  LDLS+N  S      F
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 472 SSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDN 530
           S +P L +                      LDLSQN L   IP+   N+ SL ++++S N
Sbjct: 544 SEMPVLSQ----------------------LDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Query: 531 NI-SALPP 537
           ++  +LP 
Sbjct: 582 HLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  115 bits (289), Expect = 7e-27
 Identities = 140/493 (28%), Positives = 219/493 (44%), Gaps = 55/493 (11%)

Query: 66  NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSS 123
           N   +  +++S   +S ++ +AI  L  ++++++S N +   IPD+I + ++ +++   S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           N         G   NL     SNN ++  +P D+   S +  LD+ GN   VL   +  S
Sbjct: 127 NNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN---VLVGKIPNS 183

Query: 183 WTMLTEL----IASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM 237
            T LT L    +AS  L+  +P  +G +  L  + L  N +   IP  I G  SL    +
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 238 GNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE- 293
             N L+  +P+ LG L  L  L L+ N+L      +     +L  LDLS+NSLSG  PE 
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           + ++  L  L L  N           G  P  L    + LP                   
Sbjct: 304 VIQLQNLEILHLFSNNF--------TGKIPVAL----TSLP------------------- 332

Query: 354 RLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILS 411
           RL V    L L     S  IP  + +   +T LDLS N++  E+P  L S  +L  LIL 
Sbjct: 333 RLQV----LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
            N ++      L +  SL  ++L +N         F  +P++  LD+S N      N   
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 472 SSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSD 529
             +P LQ L L R +      D    ++L  LDLS+N    ++P    +L+ L +L LS+
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 530 NNISA-LPPELVS 541
           N +S  +P EL S
Sbjct: 509 NKLSGEIPDELSS 521

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.5 bits (222), Expect = 1e-18
 Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 24/282 (8%)

Query: 46  DLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           +L+ L L  NN   K+   L +LP L VL +  NK S E+P  +G+ + L  LD+S N++
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 104 M-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS 160
             +IP+ + S+  L K    SN L+ E+P SLG C +L   +  +N  +  LP +     
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTEL-IASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
            +  LD+  N L    N+       L  L +A      G+P++ GS  RL  LDL +N+ 
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQF 487

Query: 220 L-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLK--------EYC 269
             ++P  +     L +  +  N LS  +P EL    KL +LDL  NQL         E  
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 270 VEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310
           V      LS LDLS N LSG +P  +G + +L ++ ++ N L
Sbjct: 548 V------LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 78.5 bits (193), Expect = 1e-15
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 44  AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           AV+   L L+ N +  L   L  L  L +L+ S     +    +  L  L SLD++ N +
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGR-CLNLSDFKASNNCITSLPEDLADCSKM 162
                E+   T L   D  +N + ++P  +G    NL +   S+N I SLP  L +   +
Sbjct: 106 RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL 165

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             LD+  N L+ L   L    + L  L  S N ++ +P  I  LS L  LDL  N I+ +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
            SS+S   +L+   + NN L  LP  +G LS L TLDL +NQ+           L  LDL
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 283 SNNSLSGLPPEIGKMTTLRKLLL 305
           S NSLS   P I  +  L +LLL
Sbjct: 285 SGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 76.9 bits (189), Expect = 4e-15
 Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 26/292 (8%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM-LKSLDVSFNSIM 104
            L  L L  N +     +L  L  LT L++ +N ++++P  IG L   LK LD+S N I 
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
            +P  + +   L   D S N L +LP  L    NL++   S N I+ LP ++   S    
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA--- 210

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
                                L EL  S N +  +  ++ +L  L  L+L  N++  +P 
Sbjct: 211 ---------------------LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE 249

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
           SI    +L    + NN +S++ + LG L+ L  LDL  N L         L L +  L N
Sbjct: 250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
             L+    E+   + L    +  N   +   +L    +   L  L + L E+
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDES 360

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 71.3 bits (174), Expect = 5e-13
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 21/220 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAV------DLQKLILAHNNIEKLKEDLRN 66
           +L L N  L+ +P  +  N            ++       +Q++ L+ N I +L E L +
Sbjct: 203 TLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPS 262

Query: 67  LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
              L  L++ HNK+S LP  + E   L+ L V  NSI  +P  + S   +   +  SN L
Sbjct: 263 A--LQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP +L     L   +A  N +TSLP  L    ++  LDV  N++TVL   L  +   +
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPT---I 369

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           T L  S+N L  +PE + +  ++  +   +N ++ +P S+
Sbjct: 370 TTLDVSRNALTNLPENLPAALQI--MQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 65.5 bits (159), Expect = 4e-11
 Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 27/220 (12%)

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +N+LK LP +L    N+    A++N +TS+P  L D  +  +L +  N++T L   L ++
Sbjct: 208 NNELKSLPENLQG--NIKTLYANSNQLTSIPATLPDTIQEMELSI--NRITELPERLPSA 263

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
              L  L    N ++ +PE +     L  L ++ N I ++P+ +     +    + +N+L
Sbjct: 264 ---LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
           +ALP  L     L TL+   N L      +    L VLD+S N ++ LP  +    T+  
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSL-PASLPPELQVLDVSKNQITVLPETLPP--TITT 371

Query: 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRS------RLPEN 336
           L ++ N L  L  +L     PA L+ +++      RLPE+
Sbjct: 372 LDVSRNALTNLPENL-----PAALQIMQASRNNLVRLPES 406

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 62.0 bits (150), Expect = 4e-10
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 22/235 (9%)

Query: 310 LRTLRSSLVNGPTPALLKYLR-SRLPENEDSEAST---TKEDLITMATRLSVTSKELSLE 365
           ++ +R  L N  T   LK L  + +P     + +T      +L ++   L    K L   
Sbjct: 169 VQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYAN 228

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
              L++IP+ + +   I +++LS N I ELP  L S  +LQ+L L  NKI   P+ +   
Sbjct: 229 SNQLTSIPATLPDT--IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPEE 284

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RM 484
           L  LS      N +R +P+     I  L +   S  + +LPE  P    P L+ L     
Sbjct: 285 LRYLSVYD---NSIRTLPAHLPSGITHLNVQSNS--LTALPETLP----PGLKTLEAGEN 335

Query: 485 QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
            L   P  +    +L++LD+S+N +  +PE      ++T LD+S N ++ LP  L
Sbjct: 336 ALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL 386

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.8 bits (147), Expect = 7e-10
 Identities = 98/371 (26%), Positives = 145/371 (39%), Gaps = 42/371 (11%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
             L    +NL +       L  S N L  +P ++  L  L  L       L    ++   
Sbjct: 33  INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNL 92

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSL 287
             L    +  N L +  +EL +L+ L +LDL +N + +    +   +  L  LDLS+N +
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
             LP  +  +  L+ L L+ N L  L   L N                            
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL------------------------ 188

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
                         L L G  +S +P EI     + +LDLS NSI EL   LS+  +L  
Sbjct: 189 ------------NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSG 236

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
           L LS NK++D P+  + +LS+L  L L NN +  + S     +  L+ LDLS N  S   
Sbjct: 237 LELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293

Query: 468 NPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDL 527
            P  + L  L EL L + L     ++     L   ++  N   S PE    L SL  L  
Sbjct: 294 -PLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWT 352

Query: 528 SDNNISALPPE 538
            DN +      
Sbjct: 353 LDNALDESNLN 363

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.2 bits (146), Expect = 2e-09
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+++ L  N+   +L  +   LPL+  L++S+N L   + +   ++  L+ L ++ N   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 105 -KIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161
             +PD  GS   L   D S NQ    +P  LG    L   K S N ++  +P++L+ C K
Sbjct: 466 GGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
           +  LD+  N+L+       +   +L++L  S+N L+G +P+ +G++  L+++++  N + 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 221 -SIPSS 225
            S+PS+
Sbjct: 585 GSLPST 590

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             L+LS N++  LP  LS   SL  L  S     D  +  L +L  L  L L+ N LR  
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSEN-LLNLLPLPSLDLNLNRLRSN 108

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRI 501
            S    ++  L  LDL  N  +           +L+EL L   ++   P+ +  L  L+ 
Sbjct: 109 IS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
           LDLS N L  +P+   NL++L  LDLS N IS LPPE+
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEI 205

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L++  N L+ LPA    L  L        S+  +P        L +   S NQL 
Sbjct: 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP------PGLQELSVSDNQLA 315

Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   +   ++S  D +   L  L + L   W    
Sbjct: 316 SLPALPSE---LCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 372

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLD----------LHQNRILSIPSSISGCCSLAEFYM 237
            L +   L +G+ E I S +RL  L           +  NR+ S+P   SG  SL+ +  
Sbjct: 373 RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY-- 430

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272
             N L+ LP  L  LS   T++L  N L E  ++A
Sbjct: 431 -RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 87/303 (28%), Positives = 130/303 (42%), Gaps = 19/303 (6%)

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQ-LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKM 297
           +N L  LP+ L +L  L  L       L         L L  LDL+ N L     E+ ++
Sbjct: 56  SNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLEL 115

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
           T L  L L  N +       + G   + LK L   L +N+     +   +L  +      
Sbjct: 116 TNLTSLDLDNNNI--TDIPPLIGLLKSNLKELD--LSDNKIESLPSPLRNLPNL------ 165

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
             K L L   +LS +P  +     +  LDLS N I +LPPE+   ++L+ L LS N I +
Sbjct: 166 --KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE 223

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
              + L++L +LS L+L NN L  +P +   ++  L+ LDLS N  S        SL +L
Sbjct: 224 LLSS-LSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQIS--SISSLGSLTNL 279

Query: 478 QELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 536
           +EL L    L  A   I  L  L  L L+   L       K  + L   ++  N  ++ P
Sbjct: 280 RELDLSGNSLSNALPLIALLLLLLELLLN-LLLTLKALELKLNSILLNNNILSNGETSSP 338

Query: 537 PEL 539
             L
Sbjct: 339 EAL 341

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 52.1 bits (124), Expect = 6e-07
 Identities = 78/263 (29%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           +T L +  N L+ LPA   E   L++L+VS N +  +P        L  F      L  L
Sbjct: 224 ITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 280

Query: 130 PSSLGRCL--------------NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           PS L +                 L +   S+N + SLP   A  S++ KL    N+LT  
Sbjct: 281 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLT-- 335

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
             +L    + L EL  S N L  +P      S L +L  + NR+ S+P+  SG   L E 
Sbjct: 336 --SLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSG---LKEL 387

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEI 294
            +  N L++LP      S+L  L +  N+L     + +  L LSV     N L+ LP  +
Sbjct: 388 IVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPESL 441

Query: 295 GKMTTLRKLLLTGNPL--RTLRS 315
             +++   + L GNPL  RTL++
Sbjct: 442 IHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +L++L LS N++   PD     L +L  L L  N L  +  + F  +P L+ LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 498 QLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538
            L+ LDLS N L  IP+G FK L +L  LDLS NN++++ PE
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 382 ITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           +  LDLS N +  +P        +L+ L LS N +        + L SL  L L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 476 HLQELYLR-MQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 532
           +L+ L L   +L   P    + L  L++LDLS N+L SI    F  L SL  LDLS NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 245 LPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSGLPPE-IGKMTTLR 301
           +P ++ KL  L +++L  N ++         +  L VLDLS NS +G  PE +G++T+LR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 302 KLLLTGNPL 310
            L L GN L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
           L+ L L++N +  + +   + LP L VL++S N L+ +   A   L  L+SLD+S N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 490 PTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPE 538
           P DI +L+ L+ ++LS NS++ +IP    ++TSL  LDLS N+ +   PE
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 6e-05
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 60  LKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALV 117
           +  D+  L  L  +N+S N +   +P ++G +  L+ LD+S+NS    IP+ +G  T+L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 118 KFDCSSNQLK-ELPSSLG-RCLNLSDFKASNN 147
             + + N L   +P++LG R L+ + F  ++N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 6e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 497 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
             L  LDLS N +  +P    NL +L  LDLS N I+ L P
Sbjct: 1   TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 84/291 (28%), Positives = 124/291 (42%), Gaps = 33/291 (11%)

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           L+V  + LT L + L A    +T L+   N L  +P     L  L   ++  N++ S+P 
Sbjct: 206 LNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSLPV 259

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLS 283
              G   L+ F      L ALP+ L KL   G      NQL    V    L+ LSV D  
Sbjct: 260 LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG------NQLTSLPVLPPGLQELSVSDNQ 313

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL----VNGPTPALLKYLRSRLPENEDS 339
             SL  LP E+ K+      L +   L TL S L    V+    A L  L S L +    
Sbjct: 314 LASLPALPSELCKLWAYNNQLTS---LPTLPSGLQELSVSDNQLASLPTLPSELYK---- 366

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
                  + +T    L    KEL + G  L+++P       E+ +L +S N +  LP   
Sbjct: 367 --LWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLP 421

Query: 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           S   SL    + RN++   P++ L  LSS + + L+ NPL +      ++I
Sbjct: 422 SGLLSLS---VYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREI 468

Length = 788

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 50/203 (24%), Positives = 76/203 (37%), Gaps = 60/203 (29%)

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
           EA+  +E +  M   L     EL L+ + L+ IP+ I E  +IT L L  N ++ LP  L
Sbjct: 161 EAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIPE--QITTLILDNNELKSLPENL 218

Query: 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               +++TL  + N++   P  +  ++                           Q ++LS
Sbjct: 219 Q--GNIKTLYANSNQLTSIPATLPDTI---------------------------QEMELS 249

Query: 460 YN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKN 518
            N I  LPE  P                            L+ LDL  N +  +PE    
Sbjct: 250 INRITELPERLP--------------------------SALQSLDLFHNKISCLPENLPE 283

Query: 519 LTSLTELDLSDNNISALPPELVS 541
              L  L + DN+I  LP  L S
Sbjct: 284 --ELRYLSVYDNSIRTLPAHLPS 304

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 29/113 (25%)

Query: 429 LSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLR 487
           +  L LDN  LR  +P+D                          S L HLQ + L     
Sbjct: 420 IDGLGLDNQGLRGFIPND-------------------------ISKLRHLQSINLSGNSI 454

Query: 488 EA--PTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPP 537
               P  +  +  L +LDLS NS   SIPE    LTSL  L+L+ N++S   P
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           +L  L L NN L  +P   FK +P L++LDLS N + S+     FS LP L+ L L 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLS 56

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 62/217 (28%), Positives = 87/217 (40%), Gaps = 45/217 (20%)

Query: 360 KELSLEGMNL-----SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS-------LQT 407
           + L LEG  L      A+ S +     + +L LS N    +P  L S          LQ 
Sbjct: 26  QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85

Query: 408 LILSRNKIKDWPDAILTSL---SSLSCLKLDNNPLRQVP----SDGFKDIPM-LQILDLS 459
           L LS N +      +L SL   SSL  LKL+NN L        + G KD+P  L+ L L 
Sbjct: 86  LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145

Query: 460 YN---------IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-----RLQQLRILDL 504
            N         +A         +   L+EL L    + +A    L         L +LDL
Sbjct: 146 RNRLEGASCEALAKA-----LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 505 SQNSL-----QSIPEGFKNLTSLTELDLSDNNISALP 536
           + N L      ++ E   +L SL  L+L DNN++   
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 208 RLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            L  LDL  NR+  IP  +  G  +L    +  N L+++  E    L  L +LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85
          L+ L L++N I  L   L NLP L  L++S NK+++L  
Sbjct: 3  LETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
           IP++I +   +  ++LS NSI+  +PP L S  SL+ L LS N         L  L+SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 431 CLKLDNNPLR-QVPS 444
            L L+ N L  +VP+
Sbjct: 494 ILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +  LDLS N I +LPP LS+  +L+TL LS NKI D  
Sbjct: 3   LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	542
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.2
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.96
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.67
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.58
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.44
PLN03150	623	hypothetical protein; Provisional	98.41
PLN03150	623	hypothetical protein; Provisional	98.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.39
PRK15386	426	type III secretion protein GogB; Provisional	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
KOG4341	483	consensus F-box protein containing LRR [General fu	98.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.19
KOG4341	483	consensus F-box protein containing LRR [General fu	98.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.13
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.41
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.27
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.1
smart00370	26	LRR Leucine-rich repeats, outliers.	96.1
KOG4308	478	consensus LRR-containing protein [Function unknown	95.81
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.46
KOG4308	478	consensus LRR-containing protein [Function unknown	95.14
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.07
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.03
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.58
smart00370	26	LRR Leucine-rich repeats, outliers.	91.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.89
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.15
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.11
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	80.64

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.7e-54  Score=385.04  Aligned_cols=532  Identities=45%  Similarity=0.681  Sum_probs=471.0

Q ss_pred             ChHHHHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCC
Q 009136            1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL   80 (542)
Q Consensus         1 ~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~   80 (542)
                      ++++++++|+-..+++|++.+.++|..+.+..-...+++.||+...+..+.+++|.++.+..++.++..|.+|++.++++
T Consensus         1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l   80 (565)
T KOG0472|consen    1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL   80 (565)
T ss_pred             CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence            46889999999999999999999999999998888999999999999999999999999989999999999999999999


Q ss_pred             CcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCC
Q 009136           81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS  160 (542)
Q Consensus        81 ~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~  160 (542)
                      .++|+++..+.+++.++.++|++..+|+.++.+.++.++++++|.+..++..++.+..+..++-.+|++..+|.+++.+.
T Consensus        81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~  160 (565)
T KOG0472|consen   81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS  160 (565)
T ss_pred             hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCC
Q 009136          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (542)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~  240 (542)
                      ++..+++.+|.+...++..+. +++|++++...|.++.+|..++.+.+|..|.+..|++..+| .|.+|..|.+++++.|
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N  238 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN  238 (565)
T ss_pred             HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence            999999999999999888666 99999999999999999999999999999999999999998 7999999999999999


Q ss_pred             cCcccchhcc-CCCCccEEEcCCCcCcccchhhhccc-ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCcccccccccc
Q 009136          241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV  318 (542)
Q Consensus       241 ~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~  318 (542)
                      .+..+|+... .++++..||+..|+++..|...+..+ ++.+|+++|.++.+|..++++ +|+.+.+.||.+.+++..+.
T Consensus       239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence            9999987765 88999999999999999999999888 999999999999999999999 99999999999999999999


Q ss_pred             CCCcHHHHHHHhhcCCCCCccccccchhhhhh------hhhcccccccEEEecCCCCCCCCccccccCC---ccEEECCC
Q 009136          319 NGPTPALLKYLRSRLPENEDSEASTTKEDLIT------MATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR  389 (542)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~---L~~L~l~~  389 (542)
                      ..+....+++++.++............+...+      .......+.+.++.++-+++.+|...|....   ++..+++.
T Consensus       318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence            99999999999986554433222111111111      1112224567889999999999998887654   89999999


Q ss_pred             CcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCC
Q 009136          390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP  469 (542)
Q Consensus       390 ~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  469 (542)
                      |.+..+|..+..+..+.+.-+..++..++.+..+.++++|+.|++++|.+.+++.+ +..+..|+.++++.|++... |.
T Consensus       398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~l-P~  475 (565)
T KOG0472|consen  398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRML-PE  475 (565)
T ss_pred             chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccc-hH
Confidence            99999998887777665544445555666777789999999999999999999887 66677899999999988754 45


Q ss_pred             CCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCcCCCC
Q 009136          470 PFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  538 (542)
Q Consensus       470 ~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~~  538 (542)
                      +......++.+.. .+++.+++.. +.++..|+.||+.+|+++++|..+++|++|+.|.++||+++ .|++
T Consensus       476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence            5555555555555 5888888665 99999999999999999999999999999999999999999 6654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-45  Score=402.38  Aligned_cols=502  Identities=28%  Similarity=0.335  Sum_probs=311.3

Q ss_pred             hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCccc-chhHhh-cCCCCCcEEEcCCCCCCc-chHh
Q 009136           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSHNKLSE-LPAA   86 (542)
Q Consensus        10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l-~~~~~L~~L~l~~~~~~~-l~~~   86 (542)
                      .++.||++++.+.......+..            +++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.. +|. 
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~------------l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-  136 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFR------------LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-  136 (968)
T ss_pred             cEEEEEecCCCccccCChHHhC------------CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-
Confidence            3556666666655333222222            556666666666654 455433 366666666666666542 222 


Q ss_pred             hhCCCCCcEEecCCCccc-cCCccccccCCccEEEcCCCcCC-cCCccccCCCCCCeEEccCCccc-cCCcccccCCCcc
Q 009136           87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMS  163 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~  163 (542)
                       ..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|+
T Consensus       137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence             34556666666666655 45555666666666666666554 45555666666666666666554 3455566666666


Q ss_pred             EEEccCCcccccchhhhhccccCcEEEcCCcccC-ccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCc
Q 009136          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA  241 (542)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~  241 (542)
                      +|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            6666666655444444566666666666666553 35555666666666666666554 345555566666666666666


Q ss_pred             Cc-ccchhccCCCCccEEEcCCCcCcccch-hhh-cccccEEEccCCCCCC-CChhhcCcCCCcEEEcCCCccccccccc
Q 009136          242 LS-ALPAELGKLSKLGTLDLHSNQLKEYCV-EAC-QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSL  317 (542)
Q Consensus       242 ~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~-~~~L~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~  317 (542)
                      +. .+|..+..+++|+.|++++|.+..... ... ..+|+.+++++|.+.+ +|..+..+++|+.+++++|.+.......
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            55 445555666666666666665543222 111 1236666666665553 4555566666666666666553221110


Q ss_pred             cCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC-CCCccccccCCccEEECCCCcccc-c
Q 009136          318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-L  395 (542)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l  395 (542)
                      +...         ..+.........  ............++++.+++.+|.+. .+|..+..++.|+.|++++|.++. +
T Consensus       376 ~~~~---------~~L~~L~l~~n~--l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  444 (968)
T PLN00113        376 LCSS---------GNLFKLILFSNS--LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI  444 (968)
T ss_pred             HhCc---------CCCCEEECcCCE--ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc
Confidence            0000         000000000000  00000011122457788888888776 566677778888888888888765 4


Q ss_pred             ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCc
Q 009136          396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP  475 (542)
Q Consensus       396 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  475 (542)
                      +..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|++.......+.++++|+.|++++|.+....+..+..++
T Consensus       445 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  523 (968)
T PLN00113        445 NSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK  523 (968)
T ss_pred             ChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence            5556778888888888888776544433 457888888888888876666688888899999999988888888888888


Q ss_pred             hhHHHHH-hhccc-cCchhhhcCCCCCEEeCCCCccc-ccCccccCCCCCCEEECCCCcCC-cCCC
Q 009136          476 HLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPP  537 (542)
Q Consensus       476 ~L~~L~l-~~~~~-~~~~~l~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~-~lp~  537 (542)
                      +|++|++ .+.+. .+|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|+
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999888 55554 67788888899999999999887 56888888999999999999887 4664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.2e-44  Score=393.76  Aligned_cols=484  Identities=28%  Similarity=0.365  Sum_probs=395.5

Q ss_pred             ecCCcEEEcCCCccc-chhHhhcCCCCCcEEEcCCCCCC-cchHhh-hCCCCCcEEecCCCccc-cCCccccccCCccEE
Q 009136           44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAI-GELHMLKSLDVSFNSIM-KIPDEIGSATALVKF  119 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L  119 (542)
                      ..+++.|+++++.+. .++.++..+++|+.|++++|.+. .+|..+ ..+.+|++|++++|.++ .+|.  +.+++|++|
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            357999999999887 56788999999999999999987 677754 59999999999999887 4453  568999999


Q ss_pred             EcCCCcCC-cCCccccCCCCCCeEEccCCccc-cCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccC
Q 009136          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN  197 (542)
Q Consensus       120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  197 (542)
                      ++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+.
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            99999987 67888999999999999999886 67888999999999999999988766667999999999999999986


Q ss_pred             -ccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCccc-chhhh
Q 009136          198 -GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY-CVEAC  273 (542)
Q Consensus       198 -~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~  273 (542)
                       .+|..+..+++|+.|++.+|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+... +....
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence             68888999999999999999887 57888999999999999999987 6788899999999999999988754 33332


Q ss_pred             c-ccccEEEccCCCCCC-CChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhh
Q 009136          274 Q-LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (542)
Q Consensus       274 ~-~~L~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (542)
                      . ..|+.+++++|.+.+ +|..+..+++|+.+++++|.+.......+.        .. ..+............  ....
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--------~~-~~L~~L~Ls~n~l~~--~~p~  374 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG--------KH-NNLTVLDLSTNNLTG--EIPE  374 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh--------CC-CCCcEEECCCCeeEe--eCCh
Confidence            2 359999999998876 677788999999999999987632211110        00 001111110000000  0001


Q ss_pred             hhcccccccEEEecCCCCC-CCCccccccCCccEEECCCCcccc-cChhcccCccCcEEEccCCcCCCCChhhhhCCCCC
Q 009136          352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (542)
Q Consensus       352 ~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L  429 (542)
                      .......++.+++.++.+. .+|..+..+++|+.|++.+|.++. +|..+..+++|+.|++++|.+++.....+..+++|
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence            1112356888999988876 677778889999999999998874 77788999999999999999998777777889999


Q ss_pred             cEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccc-cCchhhhcCCCCCEEeCCCC
Q 009136          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQN  507 (542)
Q Consensus       430 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~-~~~~~l~~~~~L~~L~l~~~  507 (542)
                      +.|++++|++....+..+ ..++|+.|++++|++....+..+.++++|+.|++ .+.+. .+|..+.++++|+.|++++|
T Consensus       455 ~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  533 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN  533 (968)
T ss_pred             cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCC
Confidence            999999999876544433 4689999999999999888888999999999999 66665 78889999999999999999


Q ss_pred             cccc-cCccccCCCCCCEEECCCCcCC-cCCCCCCC
Q 009136          508 SLQS-IPEGFKNLTSLTELDLSDNNIS-ALPPELVS  541 (542)
Q Consensus       508 ~l~~-l~~~l~~~~~L~~L~l~~~~l~-~lp~~~~~  541 (542)
                      .++. +|..+..+++|+.|++++|+++ .+|+.+..
T Consensus       534 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  569 (968)
T PLN00113        534 QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN  569 (968)
T ss_pred             cccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence            9884 5888999999999999999998 68876543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.2e-42  Score=307.95  Aligned_cols=453  Identities=28%  Similarity=0.403  Sum_probs=341.8

Q ss_pred             HHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHh
Q 009136            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (542)
Q Consensus         7 ~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~   86 (542)
                      ....+++++++.+++.++|..+.+             ...++.++.+++.+.++|+.+..+..|+.++++.+.+..+++.
T Consensus        66 nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~  132 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS  132 (565)
T ss_pred             cccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch
Confidence            334456677777777777777766             5667777777777777777777777777788777777777777


Q ss_pred             hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEE
Q 009136           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  166 (542)
                      +..+..|..++..+|.++++|+.+.++.++..+++.+|.+..+|...-.++.|++||...|.+..+|..++.+.+|+.|+
T Consensus       133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly  212 (565)
T KOG0472|consen  133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY  212 (565)
T ss_pred             HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence            77777777777777777778777777778888888887777777666667788888888888888888888888888888


Q ss_pred             ccCCcccccchhhhhccccCcEEEcCCcccCccccc-cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCccc
Q 009136          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (542)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  245 (542)
                      +..|++..++.  |.+|..|+++.++.|.++-+|.. .+.+.++..|++.+|+++++|..+..+.+|+.+++++|.++.+
T Consensus       213 L~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L  290 (565)
T KOG0472|consen  213 LRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL  290 (565)
T ss_pred             hhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC
Confidence            88888877763  77888888888888888777754 4577888888888888888887777788888888888888888


Q ss_pred             chhccCCCCccEEEcCCCcCcccchhhhccc----ccEEEc--cCCCCCC--------------CChhhcCcCCCcEEEc
Q 009136          246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDL--SNNSLSG--------------LPPEIGKMTTLRKLLL  305 (542)
Q Consensus       246 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~----L~~l~l--~~~~l~~--------------l~~~l~~~~~L~~L~l  305 (542)
                      |..++++ .|+.|.+.||.+.++........    ++++.-  .+..++.              .......+.+.+.|++
T Consensus       291 p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~  369 (565)
T KOG0472|consen  291 PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV  369 (565)
T ss_pred             Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence            8888887 88888888887776555443322    332211  1000000              0111223445566666


Q ss_pred             CCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCC-ccE
Q 009136          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE-ITK  384 (542)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-L~~  384 (542)
                      ++-+++.++..+|.....                                 .-...++++++.+.++|..+..... .+.
T Consensus       370 s~~qlt~VPdEVfea~~~---------------------------------~~Vt~VnfskNqL~elPk~L~~lkelvT~  416 (565)
T KOG0472|consen  370 SDKQLTLVPDEVFEAAKS---------------------------------EIVTSVNFSKNQLCELPKRLVELKELVTD  416 (565)
T ss_pred             cccccccCCHHHHHHhhh---------------------------------cceEEEecccchHhhhhhhhHHHHHHHHH
Confidence            666665555544433211                                 2357789999999999988877654 456


Q ss_pred             EECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCC
Q 009136          385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (542)
Q Consensus       385 L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  464 (542)
                      +.++++.+..+|..+..+++|+.|++++|-+.+++.+. +++..|+.|+++.|++..++.. +.....|+.+-.++|++.
T Consensus       417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~-~y~lq~lEtllas~nqi~  494 (565)
T KOG0472|consen  417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRMLPEC-LYELQTLETLLASNNQIG  494 (565)
T ss_pred             HHhhcCccccchHHHHhhhcceeeecccchhhhcchhh-hhhhhhheecccccccccchHH-HhhHHHHHHHHhcccccc
Confidence            67777778888888899999999999999999998874 7888899999999998877643 455567778878889999


Q ss_pred             CCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCccc
Q 009136          465 LPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       465 ~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~  510 (542)
                      .+.+..+.+|.+|.+|++ .+.+..+|.+++++++|++|++.||++.
T Consensus       495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            988888999999999999 8889999999999999999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-37  Score=289.65  Aligned_cols=356  Identities=25%  Similarity=0.354  Sum_probs=199.8

Q ss_pred             CCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccC-CccccccCCccEEEcCC
Q 009136           46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~  123 (542)
                      ..+.|++++|.+..+. ..|.++++|+.+.+..|.++.+|.......||+.|+|.+|.|+++ .+.+..++.|+.|+++.
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            3555666666655442 445566666666666666666655555555566666666666554 23355556666666666


Q ss_pred             CcCCcCCc-cccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc-c
Q 009136          124 NQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-P  200 (542)
Q Consensus       124 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~  200 (542)
                      |.+++++. .|..-.++++|+++.|.|+.+..+ |..+.+|.+|.++.|+++.++...|.++++|+.|++..|.++.+ -
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            66665552 344445566666666666554332 55555666666666666666666566666666666666655443 2


Q ss_pred             cccCCCCcccEEEccCCCCccCC-CCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCccc--chhhhccc
Q 009136          201 ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEY--CVEACQLR  276 (542)
Q Consensus       201 ~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~  276 (542)
                      ..|..+++|+.+.+..|.+..+. +.|-.+.++++++++.|.+..+ ..++.+++.|+.|+++.|.|..+  ..+.+..+
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk  318 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK  318 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence            34555566666666666555442 3445556666666666655544 23455556666666666655533  22333344


Q ss_pred             ccEEEccCCCCCCCChh-hcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcc
Q 009136          277 LSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL  355 (542)
Q Consensus       277 L~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (542)
                      |+.|+++.|.++.+++. +..+..|+.|+++.|.+.++...+|                                     
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af-------------------------------------  361 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF-------------------------------------  361 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-------------------------------------
Confidence            55555555555554432 4445555555555555443322221                                     


Q ss_pred             cccccEEEecCCCCCCCCccccccCCccEEECCCCcccc----cChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcE
Q 009136          356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE----LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC  431 (542)
Q Consensus       356 ~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  431 (542)
                                           ....+|++|++++|.+..    -...|.++++|+.|++.+|+++.++..+|.++++|++
T Consensus       362 ---------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  362 ---------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH  420 (873)
T ss_pred             ---------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence                                 124566666666665543    2223556666666666666666666666666666666


Q ss_pred             EEccCCCCcccCCCccCCCCCCceEecCC
Q 009136          432 LKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (542)
Q Consensus       432 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  460 (542)
                      |+|.+|.|-.|..++|..+ .|++|.++.
T Consensus       421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ecCCCCcceeecccccccc-hhhhhhhcc
Confidence            6666666666666666655 666666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-37  Score=289.16  Aligned_cols=378  Identities=27%  Similarity=0.375  Sum_probs=226.3

Q ss_pred             CcEEEcCCCcccchh-HhhcCC--CCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcC
Q 009136           47 LQKLILAHNNIEKLK-EDLRNL--PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (542)
Q Consensus        47 L~~L~l~~~~~~~l~-~~l~~~--~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  122 (542)
                      -+.|++++..++.+. +.+..+  ..-+.|++++|++..+ +..|.++++|+.+++..|.++.+|.......+|+.|++.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            455777777777553 223322  2345588888888766 456788888888888888888887766666678888888


Q ss_pred             CCcCCcCC-ccccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136          123 SNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (542)
Q Consensus       123 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (542)
                      +|.|.++. ..+...+.|++||++.|.+..++.. |..-.++++|++++|.|+.+....|.++.+|..|.++.|.++.+|
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence            88877664 4566677888888888888777653 666678888888888888887777888778888888888877777


Q ss_pred             c-ccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCcccc-hhccCCCCccEEEcCCCcCcccchhhhcccc
Q 009136          201 E-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRL  277 (542)
Q Consensus       201 ~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L  277 (542)
                      . .|+++++|+.|++..|++..+ -..|+++++|+.+.|..|.+..+. .+|..+.++++|+++.|+++...        
T Consensus       214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn--------  285 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN--------  285 (873)
T ss_pred             HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh--------
Confidence            4 456677777777777777654 235566666666666666665442 23444555555555444433221        


Q ss_pred             cEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccc
Q 009136          278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV  357 (542)
Q Consensus       278 ~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (542)
                                   ..++.+++.|+.|+++.|.+..+.                                           
T Consensus       286 -------------~g~lfgLt~L~~L~lS~NaI~rih-------------------------------------------  309 (873)
T KOG4194|consen  286 -------------EGWLFGLTSLEQLDLSYNAIQRIH-------------------------------------------  309 (873)
T ss_pred             -------------cccccccchhhhhccchhhhheee-------------------------------------------
Confidence                         113445555555555555443221                                           


Q ss_pred             cccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (542)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n  437 (542)
                                                            ++.++.+++|++|+++.|.++.++++.|..+..|++|.|++|
T Consensus       310 --------------------------------------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N  351 (873)
T KOG4194|consen  310 --------------------------------------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN  351 (873)
T ss_pred             --------------------------------------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence                                                  122344455555555555555555555555555555555555


Q ss_pred             CCcccCCCccCCCCCCceEecCCCcCCCCC---CCCCCCCchhHHHHH-hhccccCch-hhhcCCCCCEEeCCCCccccc
Q 009136          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPE---NPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSI  512 (542)
Q Consensus       438 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l-~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l  512 (542)
                      ++..+...+|..+++|++||+++|.++...   ...|..+++|++|.+ .+++++++. .+..+++|+.||+++|.+.++
T Consensus       352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence            554444444444555555555555443221   123444444444444 444444442 244556666666666666555


Q ss_pred             -CccccCCCCCCEEEC
Q 009136          513 -PEGFKNLTSLTELDL  527 (542)
Q Consensus       513 -~~~l~~~~~L~~L~l  527 (542)
                       ++.|.+| .|++|-+
T Consensus       432 q~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  432 QPNAFEPM-ELKELVM  446 (873)
T ss_pred             cccccccc-hhhhhhh
Confidence             5556666 6665544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.7e-37  Score=301.22  Aligned_cols=477  Identities=27%  Similarity=0.340  Sum_probs=389.0

Q ss_pred             eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchHhhhCCC
Q 009136           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH   91 (542)
Q Consensus        13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~   91 (542)
                      .+|.+..+++-||..++..             ..+..|++++|.+-..| +...+.-+|+.|+++++.+...|..+..++
T Consensus         2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~   68 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS   68 (1081)
T ss_pred             CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence            4688889999999998874             45889999998776544 445556669999999999999999999999


Q ss_pred             CCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC-
Q 009136           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-  170 (542)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-  170 (542)
                      +|+.|+++.|-+..+|....++.+|+++++.+|.+..+|..+..+.+|++|+++.|.+..+|.-+..+..++.+..++| 
T Consensus        69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence            9999999999999999999999999999999999999999999999999999999999999998999999999999988 


Q ss_pred             cccccchhhhhccccCcEEEcCCcccC-ccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhc
Q 009136          171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (542)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  249 (542)
                      ++...+     . ..++.+++..+.+. .++..+..+..  .+++.+|.+.  ...+..+++|+.+....|++..+..  
T Consensus       149 ~~~~lg-----~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l~~--  216 (1081)
T KOG0618|consen  149 KIQRLG-----Q-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSELEI--  216 (1081)
T ss_pred             hhhhhc-----c-ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceEEe--
Confidence            222222     2 22778888888774 45555555555  6999999877  2456778899999998888886522  


Q ss_pred             cCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHH
Q 009136          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (542)
Q Consensus       250 ~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  329 (542)
                       .-++++.|+.+.|.++.......+..++.++++++.+..+|.++..+.+++.++.+.|++..++..++.......+...
T Consensus       217 -~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~  295 (1081)
T KOG0618|consen  217 -SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA  295 (1081)
T ss_pred             -cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence             3478999999999999777777777899999999999999999999999999999999998887777665554444443


Q ss_pred             hhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCcccccc--CCccEEECCCCcccccChh-cccCccCc
Q 009136          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA--GEITKLDLSRNSIQELPPE-LSSCASLQ  406 (542)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~l~~~-~~~~~~L~  406 (542)
                      ...+.......             .....+++|++..+.+..+|..+...  .+++.++.+.+.+..+|.. =...+.|+
T Consensus       296 ~nel~yip~~l-------------e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq  362 (1081)
T KOG0618|consen  296 YNELEYIPPFL-------------EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ  362 (1081)
T ss_pred             hhhhhhCCCcc-------------cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence            33333222111             11246788888888888888765542  3477777787777777742 13467799


Q ss_pred             EEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhc
Q 009136          407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQ  485 (542)
Q Consensus       407 ~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~  485 (542)
                      .|++.+|.+++-....+.+.+.|+.|+|++|++..+++..+.+++.|++|+++||+++.+. .+..+|+.|+.|.. .++
T Consensus       363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCc
Confidence            9999999999988888999999999999999999999999999999999999999999874 78899999999999 777


Q ss_pred             cccCchhhhcCCCCCEEeCCCCcccc--cCccccCCCCCCEEECCCCc
Q 009136          486 LREAPTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNN  531 (542)
Q Consensus       486 ~~~~~~~l~~~~~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~  531 (542)
                      +...| .+..+++|+.+|++.|+++.  +|+.... |+|++||++||.
T Consensus       442 l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  442 LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             eeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            88888 88999999999999999884  3554333 899999999996

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.5e-34  Score=267.73  Aligned_cols=358  Identities=29%  Similarity=0.434  Sum_probs=277.0

Q ss_pred             hceeeccCCccc--ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhh
Q 009136           11 SGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (542)
Q Consensus        11 l~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~   88 (542)
                      .+-+|+++|.+.  .+|+++-+             ++.++.|.+.+..+.++|+-+..+++|++|.+.+|.+.++-+.++
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs   75 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS   75 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc
Confidence            355788888776  77777765             678888888888888888888888888888888888887777788


Q ss_pred             CCCCCcEEecCCCccc--cCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcc-cccCCCccEE
Q 009136           89 ELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL  165 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L  165 (542)
                      .++.|+.+.+.+|++.  .+|..+-.+.-|+.|++++|++...|..+..-+++-.|++++|+|.++|.. +.++..|-.|
T Consensus        76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL  155 (1255)
T ss_pred             cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence            8888888888888766  678888888888888888888888888888888888888888888888766 5677788888


Q ss_pred             EccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCc--cCCCCCcCCCCCcEEEcCCCcC
Q 009136          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNAL  242 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~  242 (542)
                      ++++|++..+++. ...+.+|++|.+++|.+..+. ..+..+++|+.|.+++++-+  .+|..+..+.+|..++++.|.+
T Consensus       156 DLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L  234 (1255)
T KOG0444|consen  156 DLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL  234 (1255)
T ss_pred             ccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence            8888888777766 777788888888888765332 23456777888888877644  6777888888888888888888


Q ss_pred             cccchhccCCCCccEEEcCCCcCcccchhhhcc-cccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCC
Q 009136          243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP  321 (542)
Q Consensus       243 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~-~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  321 (542)
                      ..+|..+.++++|+.|++++|.++.+......- ++++|++|.|.++.+|..+..+++|+.|..++|++           
T Consensus       235 p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL-----------  303 (1255)
T KOG0444|consen  235 PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL-----------  303 (1255)
T ss_pred             CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc-----------
Confidence            888888888888888888888888665554443 37888888888888888888888888777777764           


Q ss_pred             cHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhccc
Q 009136          322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS  401 (542)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~  401 (542)
                                                                    .+..+|+.++.+..|+.+...+|.+.-+|+.++.
T Consensus       304 ----------------------------------------------~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR  337 (1255)
T KOG0444|consen  304 ----------------------------------------------TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR  337 (1255)
T ss_pred             ----------------------------------------------cccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence                                                          2346677777777788888888877778888888


Q ss_pred             CccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136          402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (542)
Q Consensus       402 ~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~  440 (542)
                      |++|+.|.++.|.+-.++.. +--++.|+.|++..|+-.
T Consensus       338 C~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  338 CVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCc
Confidence            88888888888877776655 366788888888877643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=3.6e-34  Score=281.11  Aligned_cols=460  Identities=26%  Similarity=0.351  Sum_probs=277.0

Q ss_pred             hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCC
Q 009136           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (542)
Q Consensus        11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l   90 (542)
                      ++.|++++|-+-+.|-+..++            +-+|+.|+++.+.+...|..+..+++|+.|+++.|.+..+|.+..++
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~   90 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM   90 (1081)
T ss_pred             HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence            555666666655555555444            44466666666666666666666666666666666666666666666


Q ss_pred             CCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCC-------------------ccc-
Q 009136           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-------------------CIT-  150 (542)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------~~~-  150 (542)
                      .+|+++.|..|....+|..+..+.+|+.|+++.|.+..+|..+..++.+..+..++|                   .+. 
T Consensus        91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen   91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG  170 (1081)
T ss_pred             hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence            666666666666666666666666666666666666666655555555444444444                   222 


Q ss_pred             cCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCC
Q 009136          151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC  230 (542)
Q Consensus       151 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  230 (542)
                      .++.+...+.+  .|++..|.+...+   +..+.+|+.+....|.+..+.   -.-++++.|....|.+... ....-..
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~-~~~p~p~  241 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTL-DVHPVPL  241 (1081)
T ss_pred             chhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceee-ccccccc
Confidence            22223333333  4777777766222   556667777777777665543   1236677777777777633 2233456


Q ss_pred             CCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhccc-ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCc
Q 009136          231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP  309 (542)
Q Consensus       231 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~  309 (542)
                      +|+.++++.+.+..+|.++..+.+|+.++..+|.+..++....... |+.+++..|.+..+|+..+..+.|++|++..|.
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            8899999999999999999999999999999999988877776655 888999999988899888889999999999999


Q ss_pred             cccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCcccc-ccCCccEEECC
Q 009136          310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLS  388 (542)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~  388 (542)
                      +..++...+.....                                  .+..+..+.+.+...|..-. ..+.|+.|.+.
T Consensus       322 L~~lp~~~l~v~~~----------------------------------~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla  367 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNA----------------------------------SLNTLNVSSNKLSTLPSYEENNHAALQELYLA  367 (1081)
T ss_pred             ccccchHHHhhhhH----------------------------------HHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence            88877533322111                                  11112222222222221111 12345555555


Q ss_pred             CCcccc--cChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCC
Q 009136          389 RNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP  466 (542)
Q Consensus       389 ~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~  466 (542)
                      +|.+++  +| .+.+.++|+.|++++|.+..++...+.+++.|++|+|+||++..++ ....+++.|+.|...+|++...
T Consensus       368 nN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~f  445 (1081)
T KOG0618|consen  368 NNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSF  445 (1081)
T ss_pred             cCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeec
Confidence            555443  22 2444555555555555555555555555555555555555555544 2244555555555555554432


Q ss_pred             CCCCCCCCchhHHHHH-hhcccc--CchhhhcCCCCCEEeCCCCccccc-CccccCCCCCCEEECCCC
Q 009136          467 ENPPFSSLPHLQELYL-RMQLRE--APTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDN  530 (542)
Q Consensus       467 ~~~~~~~~~~L~~L~l-~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~  530 (542)
                      .  .+..++.|+.+++ ++++..  ++.... .+.|++||++||.-..+ -+.|..+.++...++.-+
T Consensus       446 P--e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  446 P--ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             h--hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            1  4445555555555 444432  222211 17899999999853322 344666777777777665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.9e-33  Score=264.57  Aligned_cols=363  Identities=25%  Similarity=0.367  Sum_probs=306.6

Q ss_pred             ecCCcEEEcCCCccc--chhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEc
Q 009136           44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~--~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  121 (542)
                      ++-+|-.++++|.+.  .+|.+...+..++.|.|...++..+|..++.+.+|++|.+.+|++.++-..++.++.|+.+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence            455888999999988  789999999999999999999999999999999999999999999998888999999999999


Q ss_pred             CCCcCC--cCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc
Q 009136          122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (542)
Q Consensus       122 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (542)
                      +.|++.  .+|..++.+..|..||+++|.+.+.|..+.+-+++-.|++++|+|..|+...|.++.-|-.|++++|.++.+
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L  165 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML  165 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc
Confidence            999987  789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCc--ccchhccCCCCccEEEcCCCcCcccchhhhccc
Q 009136          200 PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR  276 (542)
Q Consensus       200 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  276 (542)
                      |..+..+..|++|.+++|.+... ...+..+++|+.|.+++++-+  .+|..+..+.+|..++++.|             
T Consensus       166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-------------  232 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-------------  232 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-------------
Confidence            99999999999999999987632 245667788888888888655  67777777777766666555             


Q ss_pred             ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhccc
Q 009136          277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS  356 (542)
Q Consensus       277 L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (542)
                               ++..+|..+..+++|+.|++++|.++.+....                                    ...
T Consensus       233 ---------~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~------------------------------------~~W  267 (1255)
T KOG0444|consen  233 ---------NLPIVPECLYKLRNLRRLNLSGNKITELNMTE------------------------------------GEW  267 (1255)
T ss_pred             ---------CCCcchHHHhhhhhhheeccCcCceeeeeccH------------------------------------HHH
Confidence                     45566677777777888888887775542111                                    111


Q ss_pred             ccccEEEecCCCCCCCCccccccCCccEEECCCCcc--cccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEc
Q 009136          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI--QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL  434 (542)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l--~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L  434 (542)
                      .++++++++.++++.+|.++..++.|+.|...+|++  ..+|+.++.+.+|+++..++|.+.-++.+ +++|+.|+.|.|
T Consensus       268 ~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg-lcRC~kL~kL~L  346 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG-LCRCVKLQKLKL  346 (1255)
T ss_pred             hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh-hhhhHHHHHhcc
Confidence            345677777888888888888889999999999875  46999999999999999999988877766 689999999999


Q ss_pred             cCCCCcccCCCccCCCCCCceEecCCCcCCCC
Q 009136          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLP  466 (542)
Q Consensus       435 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~  466 (542)
                      ++|++..++. ++.-++-|+.||+..|.--..
T Consensus       347 ~~NrLiTLPe-aIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  347 DHNRLITLPE-AIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             cccceeechh-hhhhcCCcceeeccCCcCccC
Confidence            9999877764 477789999999998854433

>PLN03210 Resistant to P

Probab=99.90  E-value=2.4e-22  Score=220.38  Aligned_cols=300  Identities=22%  Similarity=0.288  Sum_probs=143.3

Q ss_pred             CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCc-cccCCccccccCCccEEEcCCC
Q 009136           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS-IMKIPDEIGSATALVKFDCSSN  124 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~  124 (542)
                      +|+.|++.++.+..+|..+ ...+|+.|++.++.+..++..+..+++|++|+++++. +..+| .+..+++|++|++++|
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDC  667 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCC
Confidence            4555555555555555444 2345555555555555555545555555555555442 33343 2444555555555554


Q ss_pred             c-CCcCCccccCCCCCCeEEccCC-ccccCCcccccCCCccEEEccCCccc-ccchhhhhccccCcEEEcCCcccCcccc
Q 009136          125 Q-LKELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGMPE  201 (542)
Q Consensus       125 ~-~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~  201 (542)
                      . +..+|..+.++++|++|++++| .+..+|... .+++|+.|++++|... .++    ....+|++|+++++.++.+|.
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p----~~~~nL~~L~L~~n~i~~lP~  742 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP----DISTNISWLDLDETAIEEFPS  742 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc----cccCCcCeeecCCCccccccc
Confidence            3 3345555555555555555554 233444332 3455555555554321 111    112344555555555544443


Q ss_pred             ccCCCCcccEEEccCCCCccCCC--------CCcCCCCCcEEEcCCCc-CcccchhccCCCCccEEEcCCCcCcccchhh
Q 009136          202 TIGSLSRLIRLDLHQNRILSIPS--------SISGCCSLAEFYMGNNA-LSALPAELGKLSKLGTLDLHSNQLKEYCVEA  272 (542)
Q Consensus       202 ~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  272 (542)
                      .+ .+++|+.|.+.++....+..        ....+++|+.|++++|. +..+|..+.++++|+.|++++|.        
T Consensus       743 ~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~--------  813 (1153)
T PLN03210        743 NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI--------  813 (1153)
T ss_pred             cc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC--------
Confidence            32 23444444444322111100        11123344444444442 22344444444444444444431        


Q ss_pred             hcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009136          273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (542)
Q Consensus       273 ~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (542)
                                   .+..+|... .+++|+.|++++|.....                                      .
T Consensus       814 -------------~L~~LP~~~-~L~sL~~L~Ls~c~~L~~--------------------------------------~  841 (1153)
T PLN03210        814 -------------NLETLPTGI-NLESLESLDLSGCSRLRT--------------------------------------F  841 (1153)
T ss_pred             -------------CcCeeCCCC-CccccCEEECCCCCcccc--------------------------------------c
Confidence                         233333332 455556666655431000                                      0


Q ss_pred             hcccccccEEEecCCCCCCCCccccccCCccEEECCCC-cccccChhcccCccCcEEEccCC
Q 009136          353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPPELSSCASLQTLILSRN  413 (542)
Q Consensus       353 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~  413 (542)
                      ...+.+++++++.++.+..+|..+..+++|+.|++.+| ++..+|..+..+++|+.+++++|
T Consensus       842 p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        842 PDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             cccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            00123455666666666666666666677777777765 36666665666667777777666

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=1.4e-21  Score=214.50  Aligned_cols=176  Identities=23%  Similarity=0.263  Sum_probs=109.7

Q ss_pred             ccccCCCCCCeEEccCCccc-------cCCcccccC-CCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136          131 SSLGRCLNLSDFKASNNCIT-------SLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (542)
Q Consensus       131 ~~~~~~~~L~~L~l~~~~~~-------~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (542)
                      ..|..+++|+.|.+..+...       .+|..+..+ .+|+.|.+.++++..++.. + ...+|++|++.++.++.++..
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~  629 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDG  629 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccccc
Confidence            34666777777776544221       344455444 3577777777777666554 2 356777777777777777777


Q ss_pred             cCCCCcccEEEccCCC-CccCCCCCcCCCCCcEEEcCCCc-CcccchhccCCCCccEEEcCCC-cCcccchhhhcccccE
Q 009136          203 IGSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGNNA-LSALPAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSV  279 (542)
Q Consensus       203 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~L~~  279 (542)
                      +..+++|+.++++++. +..+| .+..+++|+.|++++|. +..+|..+..+++|+.|++++| .++.++......+|+.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~  708 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR  708 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence            7777788888887654 34444 46667788888887764 4467777777778888888775 4555554443344666


Q ss_pred             EEccCCC-CCCCChhhcCcCCCcEEEcCCCcccc
Q 009136          280 LDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRT  312 (542)
Q Consensus       280 l~l~~~~-l~~l~~~l~~~~~L~~L~l~~~~~~~  312 (542)
                      +++++|. +..+|.   ...+|+.|+++++.+..
T Consensus       709 L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~  739 (1153)
T PLN03210        709 LNLSGCSRLKSFPD---ISTNISWLDLDETAIEE  739 (1153)
T ss_pred             EeCCCCCCcccccc---ccCCcCeeecCCCcccc
Confidence            6666653 222322   13456666666665543

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=6.4e-25  Score=196.43  Aligned_cols=381  Identities=23%  Similarity=0.298  Sum_probs=226.4

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (542)
                      ..+|+++.+++++|.++..               .-.++.|..|.|+.|| .+|+.+++||.|||++|.|..+ |.+|.+
T Consensus        49 ~~VdCr~~GL~eVP~~LP~---------------~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPP---------------ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             ceEEccCCCcccCcccCCC---------------cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence            4578888899999988854               5788888888888887 5788888888888888888876 678888


Q ss_pred             CCCCcEEecCC-CccccCCcc-ccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccCCc-ccccCCCccEE
Q 009136           90 LHMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL  165 (542)
Q Consensus        90 l~~L~~L~l~~-~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L  165 (542)
                      +..|..|-+.+ |+|+.+|.. |+.+..|+-|.+.-|++.-++ ..+..++++..|.+.++.+..+++ .|..+..++++
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence            88888777766 788888754 788888888888777777443 567778888888888888887766 46777777777


Q ss_pred             EccCCcccc------------cchhhhhccccCcEEEcCCc--------------------------ccCccc-cccCCC
Q 009136          166 DVEGNKLTV------------LSNNLIASWTMLTELIASKN--------------------------LLNGMP-ETIGSL  206 (542)
Q Consensus       166 ~l~~~~~~~------------~~~~~~~~~~~L~~L~l~~~--------------------------~~~~~~-~~~~~~  206 (542)
                      .+..|++..            .....++.........+...                          .....| .+|..+
T Consensus       194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence            776665210            00001111111111111111                          111122 235666


Q ss_pred             CcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhhccc--ccEEEc
Q 009136          207 SRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDL  282 (542)
Q Consensus       207 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~--L~~l~l  282 (542)
                      ++|++|++++|+++.+ +.+|.+...+++|.+..|++..+ ...|.++..|++|++.+|+|+.+.+..+...  |.++.+
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            6666666666666655 34566666666666666666644 2345566666666666666666555544432  555555


Q ss_pred             cCCCCCC------CChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhccc
Q 009136          283 SNNSLSG------LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS  356 (542)
Q Consensus       283 ~~~~l~~------l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (542)
                      -.|.+..      +-.++..-.                                    ......++            .|
T Consensus       354 ~~Np~~CnC~l~wl~~Wlr~~~------------------------------------~~~~~~Cq------------~p  385 (498)
T KOG4237|consen  354 LSNPFNCNCRLAWLGEWLRKKS------------------------------------VVGNPRCQ------------SP  385 (498)
T ss_pred             ccCcccCccchHHHHHHHhhCC------------------------------------CCCCCCCC------------CC
Confidence            4443222      111111100                                    00000000            01


Q ss_pred             ccccEEEecCCCCC-------------CCCccccccCCccEE-ECCCCcccccChhcccCccCcEEEccCCcCCCCChhh
Q 009136          357 VTSKELSLEGMNLS-------------AIPSEIWEAGEITKL-DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI  422 (542)
Q Consensus       357 ~~l~~l~l~~~~~~-------------~~~~~~~~~~~L~~L-~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~  422 (542)
                      ..++.+.+++..+.             .-+.....++.+... -.++..+..+|..+.  ..-+++++.+|.++.++.+ 
T Consensus       386 ~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~-  462 (498)
T KOG4237|consen  386 GFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDE-  462 (498)
T ss_pred             chhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhcccCHH-
Confidence            11111222211111             111112223333332 233334555665332  2456788888888888876 


Q ss_pred             hhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136          423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (542)
Q Consensus       423 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  461 (542)
                        .+.+| .+++++|++..+....|.++.+|..|-+++|
T Consensus       463 --~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  463 --LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             --HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence              34566 7888888888777777888888888877764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=1.9e-21  Score=198.01  Aligned_cols=257  Identities=30%  Similarity=0.372  Sum_probs=217.2

Q ss_pred             hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCC
Q 009136           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (542)
Q Consensus        11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l   90 (542)
                      -..|+++.++++++|..+.               ++|+.|++.+|.++.+|..   .++|++|++++|.++.+|..   .
T Consensus       203 ~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p  261 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---P  261 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---c
Confidence            5679999999999999774               3699999999999988853   57999999999999988753   4


Q ss_pred             CCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC
Q 009136           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (542)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  170 (542)
                      ++|+.|++++|.++.+|..+   ++|+.|++++|+++.+|..   .++|++|++++|.+..++..   ..+|+.|.+++|
T Consensus       262 ~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N  332 (788)
T PRK15387        262 PGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN  332 (788)
T ss_pred             cccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccC
Confidence            68999999999999887643   5788999999999988763   46899999999999988752   356888999999


Q ss_pred             cccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhcc
Q 009136          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG  250 (542)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  250 (542)
                      .++.++.    ...+|+.|++++|.++.+|..   ..+|+.|++.+|.+..+|..   ..+|+.|++++|.+..+|..  
T Consensus       333 ~L~~LP~----lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l--  400 (788)
T PRK15387        333 QLTSLPT----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL--  400 (788)
T ss_pred             ccccccc----cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--
Confidence            9987664    125899999999999998853   36788899999999888754   35799999999999988764  


Q ss_pred             CCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCcccc
Q 009136          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (542)
Q Consensus       251 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~  312 (542)
                       .++|+.|++++|.++.++..  ...|+.|++++|.++.+|..+..+++++.+++++|+++.
T Consensus       401 -~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        401 -PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             -ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence             36899999999999988753  346899999999999999999999999999999999863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=2.6e-21  Score=196.94  Aligned_cols=264  Identities=30%  Similarity=0.358  Sum_probs=133.3

Q ss_pred             CCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCc
Q 009136           69 LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC  148 (542)
Q Consensus        69 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  148 (542)
                      .-..|+++++.++++|..+.  .+|+.|++++|.++.+|..   .++|++|++++|+++.+|..   .++|++|++++|.
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence            34455666665555555443  2555666666555555532   34555555555555555432   2345555555555


Q ss_pred             cccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcC
Q 009136          149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG  228 (542)
Q Consensus       149 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  228 (542)
                      +..++..   ..+|+.|++++|+++.++.    ..++|+.|++++|.+..+|..   ...|+.                 
T Consensus       274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~-----------------  326 (788)
T PRK15387        274 LTHLPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCK-----------------  326 (788)
T ss_pred             hhhhhhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC---cccccc-----------------
Confidence            5444331   1344455555554444332    123444444444444444321   123444                 


Q ss_pred             CCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCC
Q 009136          229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN  308 (542)
Q Consensus       229 ~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~  308 (542)
                            |++++|.+..+|..   ..+|+.|++++|.++.++..  +..++.|++++|.+..+|..   ..+|+.|++++|
T Consensus       327 ------L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N  392 (788)
T PRK15387        327 ------LWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN  392 (788)
T ss_pred             ------cccccCcccccccc---ccccceEecCCCccCCCCCC--CcccceehhhccccccCccc---ccccceEEecCC
Confidence                  44444444444321   12445555555555444321  22345555555555554432   234555666665


Q ss_pred             ccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECC
Q 009136          309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS  388 (542)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~  388 (542)
                      .+..++..                                       +..++.+++++|.+..+|..   +.+|+.|+++
T Consensus       393 ~Lt~LP~l---------------------------------------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls  430 (788)
T PRK15387        393 RLTSLPVL---------------------------------------PSELKELMVSGNRLTSLPML---PSGLLSLSVY  430 (788)
T ss_pred             cccCCCCc---------------------------------------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhc
Confidence            54332210                                       12344555555555555532   2356777777


Q ss_pred             CCcccccChhcccCccCcEEEccCCcCCCCChhhh
Q 009136          389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAIL  423 (542)
Q Consensus       389 ~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l  423 (542)
                      +|.++.+|..+..+++|+.|++++|.+++.....+
T Consensus       431 ~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        431 RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            77777777777777777777777777776554444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=3.3e-24  Score=191.95  Aligned_cols=388  Identities=23%  Similarity=0.315  Sum_probs=253.3

Q ss_pred             ecCCc--EEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccC-CccccccCCccEE
Q 009136           44 AVDLQ--KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKF  119 (542)
Q Consensus        44 ~~~L~--~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L  119 (542)
                      |++.+  ..+.++-.++++|..++.  .-..+.|..|.|+.+|. +|..+++|+.|||++|.|+.+ |++|..+++|..|
T Consensus        43 Cs~~~g~~VdCr~~GL~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~L  120 (498)
T KOG4237|consen   43 CSDVEGGIVDCRGKGLTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSL  120 (498)
T ss_pred             cCCCCCceEEccCCCcccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHH
Confidence            44443  345566677788877763  67889999999999976 999999999999999999977 7889999998887


Q ss_pred             EcCC-CcCCcCCc-cccCCCCCCeEEccCCccccCCc-ccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCccc
Q 009136          120 DCSS-NQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (542)
Q Consensus       120 ~l~~-~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  196 (542)
                      -+.+ |+|+++|+ .|+++..++.|.+.-+.+..+.. .|..++++..|.+..|.+..+....|..+..++++.+..|.+
T Consensus       121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            6666 89999985 67889999999999999886654 488899999999999999998888899999999988777663


Q ss_pred             Cc---c----------ccccCCCCcccEEEccCCCCc--------------------------cCC-CCCcCCCCCcEEE
Q 009136          197 NG---M----------PETIGSLSRLIRLDLHQNRIL--------------------------SIP-SSISGCCSLAEFY  236 (542)
Q Consensus       197 ~~---~----------~~~~~~~~~L~~L~l~~~~~~--------------------------~~~-~~~~~~~~L~~l~  236 (542)
                      ..   +          |-.+++........+.+.++.                          ..| ..|..+++|++++
T Consensus       201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln  280 (498)
T KOG4237|consen  201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN  280 (498)
T ss_pred             ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence            11   1          111222221111112111111                          111 1245666777777


Q ss_pred             cCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhhcc--cccEEEccCCCCCCC-ChhhcCcCCCcEEEcCCCcccc
Q 009136          237 MGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT  312 (542)
Q Consensus       237 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~--~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~  312 (542)
                      +++|.++.+ +.+|.....++.|.+..|++..+....+..  .|+.|++.+|+++.+ |..|.....|..+++-.|.+. 
T Consensus       281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~-  359 (498)
T KOG4237|consen  281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN-  359 (498)
T ss_pred             cCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc-
Confidence            777777755 445666667777777777666555554443  266677777666664 333555666666666665542 


Q ss_pred             ccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcc
Q 009136          313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI  392 (542)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l  392 (542)
                                                  +.....+...+....            .....|. ...+..++.+.+++..+
T Consensus       360 ----------------------------CnC~l~wl~~Wlr~~------------~~~~~~~-Cq~p~~~~~~~~~dv~~  398 (498)
T KOG4237|consen  360 ----------------------------CNCRLAWLGEWLRKK------------SVVGNPR-CQSPGFVRQIPISDVAF  398 (498)
T ss_pred             ----------------------------CccchHHHHHHHhhC------------CCCCCCC-CCCCchhccccchhccc
Confidence                                        122222222222221            1111111 11223455555554433


Q ss_pred             cc-----------cC--hhcccCccCc-EEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEec
Q 009136          393 QE-----------LP--PELSSCASLQ-TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (542)
Q Consensus       393 ~~-----------l~--~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l  458 (542)
                      .+           .+  .+-..|+.+. +...++..++.++..+   ...-+++++.+|.++.++.+   .+.+| .+|+
T Consensus       399 ~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i---P~d~telyl~gn~~~~vp~~---~~~~l-~~dl  471 (498)
T KOG4237|consen  399 GDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI---PVDVTELYLDGNAITSVPDE---LLRSL-LLDL  471 (498)
T ss_pred             cccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC---CchhHHHhcccchhcccCHH---HHhhh-hccc
Confidence            21           11  1223455554 3455555565554321   23567889999999998866   46778 9999


Q ss_pred             CCCcCCCCCCCCCCCCchhHHHHH
Q 009136          459 SYNIASLPENPPFSSLPHLQELYL  482 (542)
Q Consensus       459 ~~n~~~~~~~~~~~~~~~L~~L~l  482 (542)
                      ++|++.......|.+++.|.+|.+
T Consensus       472 s~n~i~~Lsn~tf~n~tql~tlil  495 (498)
T KOG4237|consen  472 SNNRISSLSNYTFSNMTQLSTLIL  495 (498)
T ss_pred             ccCceehhhcccccchhhhheeEE
Confidence            999999998899999998887765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=4.6e-20  Score=189.21  Aligned_cols=245  Identities=27%  Similarity=0.434  Sum_probs=135.0

Q ss_pred             hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCC
Q 009136           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (542)
Q Consensus        11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l   90 (542)
                      .+.|++++.+++++|..+.               ++++.|++++|.+..+|..+.  .+|+.|++++|.++.+|..+.  
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--  240 (754)
T PRK15370        180 KTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--  240 (754)
T ss_pred             ceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--
Confidence            4556666666666665542               246666666666666655443  356666666666665555433  


Q ss_pred             CCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC
Q 009136           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (542)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  170 (542)
                      .+|+.|++++|.+..+|..+.  .+|+.|++++|++..+|..+.  ++|++|++++|.+..+|..+.  ++|        
T Consensus       241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL--------  306 (754)
T PRK15370        241 DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGI--------  306 (754)
T ss_pred             ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhH--------
Confidence            256666666666655555443  355666666655555554332  355555555555554443222  234        


Q ss_pred             cccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhcc
Q 009136          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG  250 (542)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~  250 (542)
                                      +.|++++|.++.+|..+.  ++|+.|++.+|.++.+|..+  +++|+.|++++|.+..+|..+.
T Consensus       307 ----------------~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp  366 (754)
T PRK15370        307 ----------------THLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP  366 (754)
T ss_pred             ----------------HHHHhcCCccccCCcccc--ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc
Confidence                            444555555544443221  45555566665555555433  2456666666666665555442


Q ss_pred             CCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhc----CcCCCcEEEcCCCccc
Q 009136          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG----KMTTLRKLLLTGNPLR  311 (542)
Q Consensus       251 ~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~----~~~~L~~L~l~~~~~~  311 (542)
                        ++|++|++++|.++.++... ...|+.+++++|.+..+|..+.    .++.+..+++.+|.+.
T Consensus       367 --~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        367 --PTITTLDVSRNALTNLPENL-PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             --CCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence              46666666666666555442 2246666777777666655433    2356677777777654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=6.7e-20  Score=188.03  Aligned_cols=228  Identities=28%  Similarity=0.408  Sum_probs=177.2

Q ss_pred             CCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCC
Q 009136           68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN  147 (542)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  147 (542)
                      .+...|++++++++++|..+.  .+|+.|++++|.++.+|..+.  ++|++|++++|+++.+|..+.  .+|+.|++++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence            356777787777777776553  467888888888777776554  478888888887777775443  46888888888


Q ss_pred             ccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCc
Q 009136          148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS  227 (542)
Q Consensus       148 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  227 (542)
                      .+..+|..+.  .+|+.|++++|++..++.. +  .++|+.|++++|.++.+|..+.  ++|+.|++.+|.+..+|..+ 
T Consensus       252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l-  323 (754)
T PRK15370        252 RITELPERLP--SALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL-  323 (754)
T ss_pred             ccCcCChhHh--CCCCEEECcCCccCccccc-c--CCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc-
Confidence            8877776554  5788888888888766543 2  2478899999998888886553  57999999999999887644 


Q ss_pred             CCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCC
Q 009136          228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG  307 (542)
Q Consensus       228 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~  307 (542)
                       .++|+.|++++|.++.+|..+.  ++|+.|++++|.++.++... +..|+.|++++|.++.+|..+.  ..|+.|++++
T Consensus       324 -~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~  397 (754)
T PRK15370        324 -PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENLP--AALQIMQASR  397 (754)
T ss_pred             -cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhcc
Confidence             3689999999999999887664  79999999999999876543 4679999999999999988765  3688999999


Q ss_pred             Cccccccc
Q 009136          308 NPLRTLRS  315 (542)
Q Consensus       308 ~~~~~~~~  315 (542)
                      |++..++.
T Consensus       398 N~L~~LP~  405 (754)
T PRK15370        398 NNLVRLPE  405 (754)
T ss_pred             CCcccCch
Confidence            99877654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=5.4e-19  Score=140.41  Aligned_cols=162  Identities=29%  Similarity=0.453  Sum_probs=136.3

Q ss_pred             eeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEc
Q 009136           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (542)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  121 (542)
                      +++.+...|.+++|.++.+|..+..+.+|+.|+++++++..+|.+++.+++|+.|+++-|++..+|..|+.+|.|+.|++
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            44678888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCcCC--cCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc
Q 009136          122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (542)
Q Consensus       122 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (542)
                      .+|++.  .+|..|+.++.|+.|+++++.+..+|..++++++|+.|.+..|.+-.++.. ++.+.+|++|.+.+|.++.+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeeec
Confidence            888877  677788888888888888888888888888888888888888887777666 77888888888888888888


Q ss_pred             ccccC
Q 009136          200 PETIG  204 (542)
Q Consensus       200 ~~~~~  204 (542)
                      |..++
T Consensus       189 ppel~  193 (264)
T KOG0617|consen  189 PPELA  193 (264)
T ss_pred             Chhhh
Confidence            74443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=1.7e-18  Score=137.64  Aligned_cols=165  Identities=35%  Similarity=0.619  Sum_probs=150.1

Q ss_pred             ccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCce
Q 009136          376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (542)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~  455 (542)
                      ++....++.|.++.|+++.+|..+..+.+|+.|++++|++++++.. +..+++|+.|+++-|++...+ .+|+.+|.|+.
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lp-rgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILP-RGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCc-cccCCCchhhh
Confidence            4556789999999999999999999999999999999999999877 489999999999999887555 55999999999


Q ss_pred             EecCCCcCCC-CCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCC
Q 009136          456 LDLSYNIASL-PENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS  533 (542)
Q Consensus       456 L~l~~n~~~~-~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~  533 (542)
                      ||+.+|.+.. ..|..|-.+..|+-|++ .+....+|..++++++|+.|.++.|++-++|.-++.++.|++|.+.+|+++
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence            9999998853 45667888999999999 889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 009136          534 ALPPELVSV  542 (542)
Q Consensus       534 ~lp~~~~~~  542 (542)
                      -+||+++.|
T Consensus       187 vlppel~~l  195 (264)
T KOG0617|consen  187 VLPPELANL  195 (264)
T ss_pred             ecChhhhhh
Confidence            999998764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=1.9e-16  Score=151.58  Aligned_cols=224  Identities=25%  Similarity=0.256  Sum_probs=137.0

Q ss_pred             ecCCcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCCc-------chHhhhCCCCCcEEecCCCccc-cCCccc
Q 009136           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIM-KIPDEI  110 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~~-------l~~~~~~l~~L~~L~l~~~~~~-~l~~~~  110 (542)
                      ..+|++|+++++.++     .++..+...+++++++++++.+..       ++..+..+++|++|++++|.+. ..+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            566888888888773     456667777888888888776652       2345667788888888887765 233344


Q ss_pred             cccC---CccEEEcCCCcCCc-----CCccccCC-CCCCeEEccCCccc-----cCCcccccCCCccEEEccCCcccccc
Q 009136          111 GSAT---ALVKFDCSSNQLKE-----LPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS  176 (542)
Q Consensus       111 ~~l~---~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~  176 (542)
                      ..+.   +|++|++++|++..     +...+..+ ++|+.|++++|.+.     .+...+..+++|++|++++|.+....
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            4333   38888888877662     22334455 67778888777766     23344556677777777777766321


Q ss_pred             h----hhhhccccCcEEEcCCcccCc-----cccccCCCCcccEEEccCCCCccC-CCCC-----cCCCCCcEEEcCCCc
Q 009136          177 N----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSI-PSSI-----SGCCSLAEFYMGNNA  241 (542)
Q Consensus       177 ~----~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-----~~~~~L~~l~l~~~~  241 (542)
                      .    ..+...++|++|++++|.++.     +...+..+++|+.|++++|.+... ...+     ...+.|+++++++|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            1    123344567777777776642     233455566677777777665521 0011     123566667776666


Q ss_pred             Cc-----ccchhccCCCCccEEEcCCCcCcc
Q 009136          242 LS-----ALPAELGKLSKLGTLDLHSNQLKE  267 (542)
Q Consensus       242 ~~-----~~~~~~~~~~~L~~L~l~~~~i~~  267 (542)
                      ++     .+...+..+++|+.+++++|.++.
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            64     223344555666666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.62  E-value=5.4e-16  Score=148.50  Aligned_cols=253  Identities=22%  Similarity=0.243  Sum_probs=185.8

Q ss_pred             HHHHHHHhhceeeccCCcccccc-hhhhhccccCCCCCceeeecCCcEEEcCCCccc-------chhHhhcCCCCCcEEE
Q 009136            3 RILKAARTSGSLNLSNRSLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------KLKEDLRNLPLLTVLN   74 (542)
Q Consensus         3 ~~~~~~~~l~~l~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------~l~~~l~~~~~L~~L~   74 (542)
                      ..+.....++.++++++.++.-+ ..+.+.+..         .+++++++++++.+.       .++..+..+++|+.|+
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~---------~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~   87 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRP---------QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD   87 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhh---------CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEE
Confidence            46778888999999999986321 122222222         677999999998765       2456788899999999


Q ss_pred             cCCCCCCc-chHhhhCC---CCCcEEecCCCcccc-----CCcccccc-CCccEEEcCCCcCC-----cCCccccCCCCC
Q 009136           75 VSHNKLSE-LPAAIGEL---HMLKSLDVSFNSIMK-----IPDEIGSA-TALVKFDCSSNQLK-----ELPSSLGRCLNL  139 (542)
Q Consensus        75 l~~~~~~~-l~~~~~~l---~~L~~L~l~~~~~~~-----l~~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~~~~~L  139 (542)
                      +++|.+.. .+..+..+   ++|++|++++|.+..     +...+..+ ++|+.|++++|.++     .++..+..+++|
T Consensus        88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L  167 (319)
T cd00116          88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL  167 (319)
T ss_pred             ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence            99999873 34444444   459999999998762     33445666 89999999999987     344566778899


Q ss_pred             CeEEccCCccc-----cCCcccccCCCccEEEccCCcccccchh----hhhccccCcEEEcCCcccCcc-----cccc-C
Q 009136          140 SDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNGM-----PETI-G  204 (542)
Q Consensus       140 ~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-----~~~~-~  204 (542)
                      ++|++++|.+.     .++..+...++|++|++++|.+......    .+..+++|++|++++|.++..     ...+ .
T Consensus       168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~  247 (319)
T cd00116         168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS  247 (319)
T ss_pred             CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence            99999999887     2344466678999999999998754432    355678899999999988641     1111 1


Q ss_pred             CCCcccEEEccCCCCc-----cCCCCCcCCCCCcEEEcCCCcCccc-----chhccCC-CCccEEEcCCCc
Q 009136          205 SLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALSAL-----PAELGKL-SKLGTLDLHSNQ  264 (542)
Q Consensus       205 ~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~-~~L~~L~l~~~~  264 (542)
                      ..+.|+.|++.+|.++     .+...+..+++|+.+++++|.+...     ...+... +.++.+++.++.
T Consensus       248 ~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         248 PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            3478999999999886     2334566678999999999998833     3344444 678888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.41  E-value=3.5e-14  Score=126.44  Aligned_cols=222  Identities=20%  Similarity=0.212  Sum_probs=135.8

Q ss_pred             ecCCcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCC----cch-------HhhhCCCCCcEEecCCCccc-c-
Q 009136           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-K-  105 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~----~l~-------~~~~~l~~L~~L~l~~~~~~-~-  105 (542)
                      ...+++++|++|.+.     .+.+.+.+.++|+..++++.-..    .+|       .++-.+++|++|+||+|.+. . 
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            567888999998876     46677888889999888875322    233       35567788999999988765 2 


Q ss_pred             ---CCccccccCCccEEEcCCCcCCcC--------------CccccCCCCCCeEEccCCccccC-----CcccccCCCcc
Q 009136          106 ---IPDEIGSATALVKFDCSSNQLKEL--------------PSSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMS  163 (542)
Q Consensus       106 ---l~~~~~~l~~L~~L~l~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~l-----~~~~~~~~~L~  163 (542)
                         +-+-+.+++.|++|++.+|.+...              .+....-+.|+++....|++..-     ...|...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence               223356788888988888877621              12234456677777777766532     23455666777


Q ss_pred             EEEccCCccccc----chhhhhccccCcEEEcCCcccCc-----cccccCCCCcccEEEccCCCCcc-----CCCCC-cC
Q 009136          164 KLDVEGNKLTVL----SNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSI-SG  228 (542)
Q Consensus       164 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~-~~  228 (542)
                      .+.+..|.|..-    ....+..+++|+.|++.+|.++.     +...++.+++|+.+++++|.+..     +...+ ..
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            777777666532    22345666667777777666642     33455566666666666665541     11111 23


Q ss_pred             CCCCcEEEcCCCcCc-----ccchhccCCCCccEEEcCCCcC
Q 009136          229 CCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQL  265 (542)
Q Consensus       229 ~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i  265 (542)
                      .++|+.+.+.+|.++     .+...+...+.|..|++++|.+
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            455666666666555     1222233455555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.36  E-value=3e-14  Score=134.60  Aligned_cols=208  Identities=30%  Similarity=0.397  Sum_probs=164.5

Q ss_pred             hHHHHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCC
Q 009136            2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS   81 (542)
Q Consensus         2 ~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~   81 (542)
                      ++++.-...-..+.|++..+.++|-..+. +.          +..-...+++.|.+.++|..+..|..|+.+.+..|.+.
T Consensus        43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~-~~----------ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r  111 (722)
T KOG0532|consen   43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS-YD----------LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR  111 (722)
T ss_pred             hHHHHHHhhhcccccccchhhcCCCcccc-cc----------ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence            46677777778888888888888776665 22          34556678888888888888878888888888888888


Q ss_pred             cchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCC
Q 009136           82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK  161 (542)
Q Consensus        82 ~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~  161 (542)
                      .+|.++..+..|.+++|+.|.++.+|..+..++ |+.|-+++|+++.+|..++....|.+||.+.|.+..++..++.+.+
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s  190 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS  190 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence            888888888888888888888888887776665 7788888888888888888888888888888888888888888888


Q ss_pred             ccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCC
Q 009136          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP  223 (542)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  223 (542)
                      |+.|.+..|.+..++.. +. .-.|..|+++.|.+..+|-.|.+++.|++|-+.+|.+..=|
T Consensus       191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence            88888888888777766 33 44567788888888888888888888888888888776443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=1.4e-13  Score=122.61  Aligned_cols=231  Identities=22%  Similarity=0.316  Sum_probs=173.8

Q ss_pred             HHHHHHhhceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEcCCCccc----chh-------HhhcCCCCCc
Q 009136            4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE----KLK-------EDLRNLPLLT   71 (542)
Q Consensus         4 ~~~~~~~l~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~-------~~l~~~~~L~   71 (542)
                      .+..+..++.|++|+|.+. +....+.+.+..         -++|++.++++--..    ++|       +++..+++|+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~---------~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~   95 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLAS---------KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ   95 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhh---------cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence            3445567899999999887 444445444443         578999999874221    333       4567889999


Q ss_pred             EEEcCCCCCC--c---chHhhhCCCCCcEEecCCCccccC--------------CccccccCCccEEEcCCCcCCcCC--
Q 009136           72 VLNVSHNKLS--E---LPAAIGELHMLKSLDVSFNSIMKI--------------PDEIGSATALVKFDCSSNQLKELP--  130 (542)
Q Consensus        72 ~L~l~~~~~~--~---l~~~~~~l~~L~~L~l~~~~~~~l--------------~~~~~~l~~L~~L~l~~~~~~~~~--  130 (542)
                      .++||+|-+.  .   +-.-+.++..|++|.|.+|.+...              ......-++|+.+..+.|++...+  
T Consensus        96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~  175 (382)
T KOG1909|consen   96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT  175 (382)
T ss_pred             EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH
Confidence            9999999777  2   333568899999999999987721              123456789999999999987443  


Q ss_pred             ---ccccCCCCCCeEEccCCccc-----cCCcccccCCCccEEEccCCcccccc----hhhhhccccCcEEEcCCcccCc
Q 009136          131 ---SSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNG  198 (542)
Q Consensus       131 ---~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~  198 (542)
                         ..+...+.|+.+.+..|.|.     .+...+..+++|+.|++..|.++.-.    ..++..+++|+++++++|.++.
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~  255 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN  255 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence               45677889999999999876     33456899999999999999887433    3457788999999999999853


Q ss_pred             -----ccccc-CCCCcccEEEccCCCCc-----cCCCCCcCCCCCcEEEcCCCcCc
Q 009136          199 -----MPETI-GSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       199 -----~~~~~-~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~  243 (542)
                           +..++ ...+.|+.+.+.+|.++     .+...+...+.|+.|++++|.+.
T Consensus       256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence                 22222 33689999999999887     22334566899999999999984

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=4.1e-12  Score=125.07  Aligned_cols=179  Identities=31%  Similarity=0.451  Sum_probs=144.1

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCC-CCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~-~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  122 (542)
                      .+.++.|++.++.+..++....... +|+.|+++++.+.+++..+..+++|+.|++++|.+..+|...+..++|+.|+++
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence            4678888888888888887777774 888888888888888878888888888988888888888777788888888888


Q ss_pred             CCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (542)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (542)
                      +|++..+|........|+++.++++.+...+..+..+.++..+.+.++++..... .+..++.++.|++++|.+..++. 
T Consensus       195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~l~~l~~L~~s~n~i~~i~~-  272 (394)
T COG4886         195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS-  272 (394)
T ss_pred             CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc-hhccccccceecccccccccccc-
Confidence            8888888877667777888888888766666677778888888887777766422 26777788888888888888876 


Q ss_pred             cCCCCcccEEEccCCCCccCCC
Q 009136          203 IGSLSRLIRLDLHQNRILSIPS  224 (542)
Q Consensus       203 ~~~~~~L~~L~l~~~~~~~~~~  224 (542)
                      +....+++.++++++.+...+.
T Consensus       273 ~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         273 LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccCccCEEeccCccccccch
Confidence            7778888889998887765433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=5.9e-12  Score=124.00  Aligned_cols=195  Identities=33%  Similarity=0.479  Sum_probs=132.7

Q ss_pred             EEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccC-CccEEEcCCCcCCcCCccccCCCCCCeEEccCCccc
Q 009136           72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT  150 (542)
Q Consensus        72 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  150 (542)
                      .++...+.+......+.....++.|++.++.++.++....... +|+.|++++|++..++..++.+++|+.|++++|.+.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            4566666554333445555667777777777777766666664 777777777777776666677777777777777777


Q ss_pred             cCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCC
Q 009136          151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC  230 (542)
Q Consensus       151 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  230 (542)
                      .++......+.|+.|++++|.+..++.. ......|+++.+++|.....+..+.....+..+.+.++++..++..+..++
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence            7766555667777777777777766653 234445777777777655555566666777777777777666666777777


Q ss_pred             CCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCccc
Q 009136          231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (542)
Q Consensus       231 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~  268 (542)
                      +++.+++++|.+..++. ++...+++.++++++.+...
T Consensus       256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence            77777777777777766 77777777787777766544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=1.2e-13  Score=130.67  Aligned_cols=212  Identities=29%  Similarity=0.406  Sum_probs=164.7

Q ss_pred             EEcCCCcCCcCCccccC--CCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCccc
Q 009136          119 FDCSSNQLKELPSSLGR--CLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (542)
Q Consensus       119 L~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  196 (542)
                      |.|++-+++.+|..-..  +..-...|++.|++..+|..+..+..|+.+.+..|.+..+... ++++..|+.++++.|.+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQL  133 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchh
Confidence            34444445555432222  2233345666677777777777777777777776666665544 66777777777777777


Q ss_pred             CccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhccc
Q 009136          197 NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR  276 (542)
Q Consensus       197 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  276 (542)
                      ..+|..+..++ |+.+-+++|+++.+|+.++....|..++.+.|.+..+|..+.++.+|+.+.+..|++..++.......
T Consensus       134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp  212 (722)
T KOG0532|consen  134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP  212 (722)
T ss_pred             hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc
Confidence            77777666655 88888999999999988888889999999999999999999999999999999999999999999888


Q ss_pred             ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhc
Q 009136          277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR  332 (542)
Q Consensus       277 L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (542)
                      |..||+++|++..+|-.|.+|+.|++|.+.+|.+.+-++.+...+....++++...
T Consensus       213 Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q  268 (722)
T KOG0532|consen  213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ  268 (722)
T ss_pred             eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence            99999999999999999999999999999999999887766666555555554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=7.1e-12  Score=104.99  Aligned_cols=121  Identities=26%  Similarity=0.367  Sum_probs=39.3

Q ss_pred             ecCCcEEEcCCCcccchhHhhc-CCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccc-cccCCccEEEc
Q 009136           44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC  121 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~-~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l  121 (542)
                      +.++++|+++++.|..|. .+. .+.+|+.|++++|.++++. .+..+++|+.|++++|.++.+++.+ ..+|+|++|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            456788888888887664 343 5677888888888887763 4666778888888888877776544 35777888888


Q ss_pred             CCCcCCcCC--ccccCCCCCCeEEccCCccccCCcc----cccCCCccEEE
Q 009136          122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLD  166 (542)
Q Consensus       122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~----~~~~~~L~~L~  166 (542)
                      ++|++..+.  ..+..+++|++|++.+|.+...+..    +..+|+|+.||
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            877776543  2344555555555555555433221    33445555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=7.4e-12  Score=109.33  Aligned_cols=227  Identities=24%  Similarity=0.237  Sum_probs=148.5

Q ss_pred             hhhCCCCCcEEecCCCc--c-----c--cCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCccc
Q 009136           86 AIGELHMLKSLDVSFNS--I-----M--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL  156 (542)
Q Consensus        86 ~~~~l~~L~~L~l~~~~--~-----~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~  156 (542)
                      .+..+..|++|..++..  +     .  .+|..+.-..+|+.+.++.|.-..+......-+.|+++......+...+. +
T Consensus       177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l  255 (490)
T KOG1259|consen  177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-L  255 (490)
T ss_pred             HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc-c
Confidence            34445566666665431  1     1  23444455566666666666554443333344556666555544332211 1


Q ss_pred             ccCCCccEEEccCCccc-ccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEE
Q 009136          157 ADCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF  235 (542)
Q Consensus       157 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l  235 (542)
                      -....+.......-... ..-......+..|+++++++|.++.+.+...-.+.++.|+++.|.+..+. .++.+++|..|
T Consensus       256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~L  334 (490)
T KOG1259|consen  256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLL  334 (490)
T ss_pred             cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEe
Confidence            11111111111100000 00001133456788899999999888888888899999999999988774 48889999999


Q ss_pred             EcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCC--hhhcCcCCCcEEEcCCCccccc
Q 009136          236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTL  313 (542)
Q Consensus       236 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~~~~~  313 (542)
                      ++++|.++.+..+-.++-++++|.+++|.+..+.-.....+|..+|+++|++..+.  ..++.++.|+.+.+.+|++..+
T Consensus       335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            99999988887777788899999999998887776666677999999999888864  3478899999999999988655


Q ss_pred             c
Q 009136          314 R  314 (542)
Q Consensus       314 ~  314 (542)
                      .
T Consensus       415 v  415 (490)
T KOG1259|consen  415 V  415 (490)
T ss_pred             c
Confidence            4

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=5.3e-12  Score=115.90  Aligned_cols=200  Identities=18%  Similarity=0.183  Sum_probs=132.7

Q ss_pred             ecCCcEEEcCCCcccchh--HhhcCCCCCcEEEcCCCCCCc---chHhhhCCCCCcEEecCCCccccCCcc--ccccCCc
Q 009136           44 AVDLQKLILAHNNIEKLK--EDLRNLPLLTVLNVSHNKLSE---LPAAIGELHMLKSLDVSFNSIMKIPDE--IGSATAL  116 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~l~~~--~~~l~~L  116 (542)
                      .++|+++.+..+.+...+  +..+.|++++.||++.|-+..   +......+++|+.|+++.|.+......  -..++.|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            567888888887777544  467778888888888876653   333456778888888888776633222  2356778


Q ss_pred             cEEEcCCCcCC--cCCccccCCCCCCeEEccCCc-cccCCcccccCCCccEEEccCCcccccch-hhhhccccCcEEEcC
Q 009136          117 VKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIAS  192 (542)
Q Consensus       117 ~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~  192 (542)
                      +.|.+++|.++  ++......+++|+.|++..|. +..-.....-+..|+.|++++|.+.+.+. ...+.++.|..|+++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            88888888776  333445567788888887774 22222334556778888888877765542 235667778888888


Q ss_pred             CcccCcc--ccc-----cCCCCcccEEEccCCCCccCC--CCCcCCCCCcEEEcCCCcCc
Q 009136          193 KNLLNGM--PET-----IGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       193 ~~~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~  243 (542)
                      .+.+.++  |..     ...+++|+.|++..|++...+  ..+...++|+.+.+..+.+.
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            8877653  222     355788888888888886442  34555667777777776665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=3.1e-12  Score=111.67  Aligned_cols=133  Identities=27%  Similarity=0.326  Sum_probs=103.8

Q ss_pred             ccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEE
Q 009136          133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL  212 (542)
Q Consensus       133 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  212 (542)
                      +..++.|+++|+++|.|+.+.++..-.|.++.|+++.|.+..++.  ++.+++|++|++++|.+..+..+-.++-++++|
T Consensus       280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL  357 (490)
T ss_pred             cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence            345677888999999988888888888999999999998888776  778888888888888888777666677788888


Q ss_pred             EccCCCCccCCCCCcCCCCCcEEEcCCCcCcccc--hhccCCCCccEEEcCCCcCccc
Q 009136          213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEY  268 (542)
Q Consensus       213 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~  268 (542)
                      .+.+|.+..+ ..+..+.+|..|++++|+|..+.  ..++++|.|+++.+.+|.+..+
T Consensus       358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            8888877655 44667778888888888877553  3577777777777777766543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=4.6e-12  Score=116.33  Aligned_cols=203  Identities=21%  Similarity=0.219  Sum_probs=131.5

Q ss_pred             hcCCCCCcEEEcCCCCCCcch--HhhhCCCCCcEEecCCCcccc---CCccccccCCccEEEcCCCcCCcCCcc--ccCC
Q 009136           64 LRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSS--LGRC  136 (542)
Q Consensus        64 l~~~~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~  136 (542)
                      =.++..|+...+.++.+...+  .....|++++.||+++|-+..   +-.....+|+|+.|+++.|++......  -..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            356778888899988887655  367789999999999885553   334456789999999999887743321  2356


Q ss_pred             CCCCeEEccCCccc--cCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc--cccCCCCcccEE
Q 009136          137 LNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRL  212 (542)
Q Consensus       137 ~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L  212 (542)
                      ++|+.|.++.|+++  .+..-+..+|+|+.|.+.+|....+.......+..|++|++++|.+..++  .....++.|..+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            77888888888777  44444666788888888877533333333555666777777777776555  234556667777


Q ss_pred             EccCCCCccC--CCC-----CcCCCCCcEEEcCCCcCcccc--hhccCCCCccEEEcCCCcCc
Q 009136          213 DLHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK  266 (542)
Q Consensus       213 ~l~~~~~~~~--~~~-----~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~  266 (542)
                      ++..+.+..+  |+.     ....++|+.|++..|++.+++  ..+..+++|+.+.+..+.+.
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            7777666633  221     234566666666666665442  23444555555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.16  E-value=4e-11  Score=100.49  Aligned_cols=107  Identities=31%  Similarity=0.412  Sum_probs=43.9

Q ss_pred             ccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      ..+++|++.++.++.+..--..+.+|+.|++++|.++.++ .+..++.|++|++++|.++++.......+|+|++|++++
T Consensus        19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            4578899999999877532224788999999999999886 478899999999999999998765445689999999999


Q ss_pred             CCCcccCC-CccCCCCCCceEecCCCcCC
Q 009136          437 NPLRQVPS-DGFKDIPMLQILDLSYNIAS  464 (542)
Q Consensus       437 n~i~~~~~-~~~~~~~~L~~L~l~~n~~~  464 (542)
                      |+|.++.. ..+..+++|+.|++.+|.+.
T Consensus        98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   98 NKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            99887654 35678899999999999775

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=3.2e-10  Score=119.27  Aligned_cols=105  Identities=31%  Similarity=0.489  Sum_probs=68.7

Q ss_pred             ecCCcEEEcCCCc--ccchh-HhhcCCCCCcEEEcCCC-CCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEE
Q 009136           44 AVDLQKLILAHNN--IEKLK-EDLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF  119 (542)
Q Consensus        44 ~~~L~~L~l~~~~--~~~l~-~~l~~~~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  119 (542)
                      +++|++|-+.++.  +..++ ..|..++.|++||+++| .+..+|..++.+-+||+|+++++.+.++|..+.++..|.+|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            4467777776664  44443 34666777777777754 44567777777777777777777777777777777777777


Q ss_pred             EcCCCcCC-cCCccccCCCCCCeEEccCCc
Q 009136          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNC  148 (542)
Q Consensus       120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~  148 (542)
                      ++..+... .++.....+++|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            77765533 333444447777777776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.96  E-value=8.6e-11  Score=115.75  Aligned_cols=217  Identities=27%  Similarity=0.381  Sum_probs=145.0

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      +..++.+.++.+.++.+...+..+.+|+.|++.++.+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++.+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG  149 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc
Confidence            4567777777777776656677778888888888888776555777888888888888887763 366666788888888


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (542)
                      |.++.+. .+..++.|+.++++++.+..+... ...+.+++.+.+.+|.+..+..  +.....+..+.+..|.+..+.. 
T Consensus       150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~-  225 (414)
T KOG0531|consen  150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG-  225 (414)
T ss_pred             Ccchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC-
Confidence            8887663 455577888888888887766543 4677888888888887776554  3333344444666666654421 


Q ss_pred             cCCCC--cccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCc
Q 009136          203 IGSLS--RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (542)
Q Consensus       203 ~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  266 (542)
                      +....  .|+.+.+.++.+..++..+..+..+..+++.++.+..+.. +...+.+..+....+.+.
T Consensus       226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhc
Confidence            11222  3777888888777665666777777778887777664422 333444455555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1.4e-10  Score=114.31  Aligned_cols=263  Identities=27%  Similarity=0.333  Sum_probs=190.9

Q ss_pred             cCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCC
Q 009136           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  124 (542)
                      +.++.++...+.+.........+..++.+.+..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N  128 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN  128 (414)
T ss_pred             chhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc
Confidence            44555555555443222111456777778888888877545678889999999999999988766889999999999999


Q ss_pred             cCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccch-hhhhccccCcEEEcCCcccCcccccc
Q 009136          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETI  203 (542)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~  203 (542)
                      .|+.+ ..+..++.|+.|++.+|.+..+. .+..++.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+..+. .+
T Consensus       129 ~I~~i-~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~  204 (414)
T KOG0531|consen  129 KITKL-EGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GL  204 (414)
T ss_pred             ccccc-cchhhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-ch
Confidence            99987 45677778999999999999774 45668999999999999988876 3 477888999999999887654 22


Q ss_pred             CCCCcccEEEccCCCCccCCCCCcCCC--CCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEE
Q 009136          204 GSLSRLIRLDLHQNRILSIPSSISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD  281 (542)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~  281 (542)
                      .....+..+++.+|.+..+. .+....  .|+.++++++++..++..+..+..+..+++..+.+...........+..+.
T Consensus       205 ~~~~~l~~~~l~~n~i~~~~-~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~  283 (414)
T KOG0531|consen  205 DLLKKLVLLSLLDNKISKLE-GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELW  283 (414)
T ss_pred             HHHHHHHHhhcccccceecc-CcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhc
Confidence            33444555577777776542 222333  389999999999988777888899999999999888766665555555566


Q ss_pred             ccCCCCCCC----Ch-hhcCcCCCcEEEcCCCcccc
Q 009136          282 LSNNSLSGL----PP-EIGKMTTLRKLLLTGNPLRT  312 (542)
Q Consensus       282 l~~~~l~~l----~~-~l~~~~~L~~L~l~~~~~~~  312 (542)
                      ...+.+...    .. .....+.++.+.+..+....
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  284 LNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             cCcchhcchhhhhccccccccccccccccccCcccc
Confidence            665554431    11 14455667777777776544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=6.6e-10  Score=76.47  Aligned_cols=60  Identities=40%  Similarity=0.650  Sum_probs=37.6

Q ss_pred             ccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCc
Q 009136          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (542)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~  462 (542)
                      |+|++|++++|+++.++...|.++++|++|++++|++..++..+|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            355666666666666666666666666666666666666666666666666666666654

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.86  E-value=3.3e-09  Score=111.74  Aligned_cols=126  Identities=21%  Similarity=0.271  Sum_probs=61.5

Q ss_pred             CccEEEcCCCcCCcCCccccCCCCCCeEEccCCc--cccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEc
Q 009136          115 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC--ITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA  191 (542)
Q Consensus       115 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  191 (542)
                      ..+...+.++.+..++... .+++|++|-+.++.  +..++.. |..++.|+.|++++|.--..-+..++.+-+|++|++
T Consensus       524 ~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             heeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            3444444444444433222 22245555555553  3333222 444566666666544222222222555555666666


Q ss_pred             CCcccCccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCc
Q 009136          192 SKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA  241 (542)
Q Consensus       192 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~  241 (542)
                      +++.+..+|..+.+++.|.+|++..+... .++.....+++|++|.+....
T Consensus       603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            66666666666666666666666654322 223344445666666655443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2.4e-09  Score=73.63  Aligned_cols=60  Identities=38%  Similarity=0.613  Sum_probs=55.0

Q ss_pred             CCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCC
Q 009136          380 GEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (542)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i  439 (542)
                      |+|++|++++|.++.+|. +|.++++|++|++++|.++.+++..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999999885 688999999999999999999999999999999999999975

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.67  E-value=3.3e-10  Score=110.73  Aligned_cols=172  Identities=26%  Similarity=0.313  Sum_probs=110.2

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCC-CCCcEEEcCCCCCCcchHhhhC----------CCCCcEEecCCCccccCCccccc
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNL-PLLTVLNVSHNKLSELPAAIGE----------LHMLKSLDVSFNSIMKIPDEIGS  112 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~~~~l~~~~~~----------l~~L~~L~l~~~~~~~l~~~~~~  112 (542)
                      +..||+|.+++|++... ..+..+ ..|++|-..+ ....+...|..          ..+|...+++.|.++.+..++.-
T Consensus       108 F~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLql  185 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQL  185 (1096)
T ss_pred             ccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHH
Confidence            68899999999887642 122211 2344443322 12211111111          23577777777777777777777


Q ss_pred             cCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcC
Q 009136          113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS  192 (542)
Q Consensus       113 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  192 (542)
                      ++.++.|++++|++.... .+..+++|++||++.|.+..+|..-..--+|..|.+++|.++.+..  +.++++|+.|+++
T Consensus       186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~g--ie~LksL~~LDls  262 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRG--IENLKSLYGLDLS  262 (1096)
T ss_pred             HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhh--HHhhhhhhccchh
Confidence            778888888888877664 6777788888888888777666542222347888888887776654  6777778888888


Q ss_pred             CcccCcccc--ccCCCCcccEEEccCCCCc
Q 009136          193 KNLLNGMPE--TIGSLSRLIRLDLHQNRIL  220 (542)
Q Consensus       193 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~  220 (542)
                      .|.+....+  .+..+..|+.|.+.||.+.
T Consensus       263 yNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  263 YNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            887755432  2344566777778777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.58  E-value=8.4e-08  Score=83.21  Aligned_cols=135  Identities=18%  Similarity=0.159  Sum_probs=65.3

Q ss_pred             hhhCCCCCcEEecCCCccc-cCC----ccccccCCccEEEcCCCcCCcC-----C---------ccccCCCCCCeEEccC
Q 009136           86 AIGELHMLKSLDVSFNSIM-KIP----DEIGSATALVKFDCSSNQLKEL-----P---------SSLGRCLNLSDFKASN  146 (542)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~-~l~----~~~~~l~~L~~L~l~~~~~~~~-----~---------~~~~~~~~L~~L~l~~  146 (542)
                      ++-+|++|+..+||+|.+. ..|    +.+++.+.|.+|.+++|.+..+     .         +...+-+.|+++.+..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            3445555555555555443 222    2234455555555555544311     1         1122345556666555


Q ss_pred             CccccCCc-----ccccCCCccEEEccCCcccccchh-----hhhccccCcEEEcCCcccCc-----cccccCCCCcccE
Q 009136          147 NCITSLPE-----DLADCSKMSKLDVEGNKLTVLSNN-----LIASWTMLTELIASKNLLNG-----MPETIGSLSRLIR  211 (542)
Q Consensus       147 ~~~~~l~~-----~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~  211 (542)
                      |++...+.     .+..-..|+.+.+.+|.|..-+..     .+..+.+|+.|++.+|.++.     +..++..++.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            55543322     122224566666655555432111     13344566666666666532     2234555666777


Q ss_pred             EEccCCCCc
Q 009136          212 LDLHQNRIL  220 (542)
Q Consensus       212 L~l~~~~~~  220 (542)
                      |.+.+|-++
T Consensus       247 L~lnDClls  255 (388)
T COG5238         247 LRLNDCLLS  255 (388)
T ss_pred             ccccchhhc
Confidence            777777554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.51  E-value=7.6e-08  Score=60.25  Aligned_cols=41  Identities=41%  Similarity=0.690  Sum_probs=36.3

Q ss_pred             CCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCcCCC
Q 009136          497 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP  537 (542)
Q Consensus       497 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~  537 (542)
                      ++|++|++++|+++.+|..+.+|++|+.|++++|+|+++|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            57999999999999998889999999999999999998875

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.2e-08  Score=89.51  Aligned_cols=196  Identities=16%  Similarity=0.183  Sum_probs=122.7

Q ss_pred             CCcEEEcCCCccc--chhHhhcCC-CCCcEEEcCCCCCC--cchHhhhCCCCCcEEecCCCccc-cCCccccccCCccEE
Q 009136           46 DLQKLILAHNNIE--KLKEDLRNL-PLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKF  119 (542)
Q Consensus        46 ~L~~L~l~~~~~~--~l~~~l~~~-~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L  119 (542)
                      .+.++.+...-+.  .+.+.+..+ ..|+++|+++..++  ++-..++.|++|+.|.+.++.+. .+...+.+..+|+.+
T Consensus       160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l  239 (419)
T KOG2120|consen  160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL  239 (419)
T ss_pred             CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence            4555555543222  233333333 25888888888777  44556778888888888888776 455567777888888


Q ss_pred             EcCCCc-CCcCC--ccccCCCCCCeEEccCCccccC--Cccc-ccCCCccEEEccCCccc--ccc-hhhhhccccCcEEE
Q 009136          120 DCSSNQ-LKELP--SSLGRCLNLSDFKASNNCITSL--PEDL-ADCSKMSKLDVEGNKLT--VLS-NNLIASWTMLTELI  190 (542)
Q Consensus       120 ~l~~~~-~~~~~--~~~~~~~~L~~L~l~~~~~~~l--~~~~-~~~~~L~~L~l~~~~~~--~~~-~~~~~~~~~L~~L~  190 (542)
                      +++.+. ++...  -.+.+|+.|..|++++|....-  ...+ .--++|..|+++|+.-.  .-. .-..+.++++.+|+
T Consensus       240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD  319 (419)
T ss_pred             ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence            888775 44322  3456788888888888865411  0011 11267888888876422  111 11246788888888


Q ss_pred             cCCccc-C-ccccccCCCCcccEEEccCCCCc--cCCCCCcCCCCCcEEEcCCCc
Q 009136          191 ASKNLL-N-GMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNA  241 (542)
Q Consensus       191 l~~~~~-~-~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~  241 (542)
                      ++++.. + ..-..+.+++.|+++.++.|..-  ...-.+...|.|.+|++-++-
T Consensus       320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            888754 2 22234667788888888887432  111245677888888877653

>PLN03150 hypothetical protein; Provisional

Probab=98.41  E-value=8.8e-07  Score=91.63  Aligned_cols=89  Identities=27%  Similarity=0.343  Sum_probs=54.7

Q ss_pred             ccEEECCCCcccc-cChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCC
Q 009136          382 ITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (542)
Q Consensus       382 L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  460 (542)
                      ++.|++++|.+.. +|..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|++....+..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            5566666666553 555666666666666666666655454556666666666666666654444466666666666666


Q ss_pred             CcCCCCCCCC
Q 009136          461 NIASLPENPP  470 (542)
Q Consensus       461 n~~~~~~~~~  470 (542)
                      |.+++..|..
T Consensus       500 N~l~g~iP~~  509 (623)
T PLN03150        500 NSLSGRVPAA  509 (623)
T ss_pred             CcccccCChH
Confidence            6665544433

>PLN03150 hypothetical protein; Provisional

Probab=98.40  E-value=9.4e-07  Score=91.40  Aligned_cols=106  Identities=25%  Similarity=0.382  Sum_probs=77.0

Q ss_pred             cCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHh
Q 009136          404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR  483 (542)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~  483 (542)
                      .++.|++++|.+++..+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|++....+.              
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~--------------  484 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE--------------  484 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch--------------
Confidence            367889999988887777788899999999999988765555588889999999999988755444              


Q ss_pred             hccccCchhhhcCCCCCEEeCCCCccc-ccCccccCC-CCCCEEECCCCc
Q 009136          484 MQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNL-TSLTELDLSDNN  531 (542)
Q Consensus       484 ~~~~~~~~~l~~~~~L~~L~l~~~~l~-~l~~~l~~~-~~L~~L~l~~~~  531 (542)
                              .++++++|+.|++++|.++ .+|..+... .++..+++.+|+
T Consensus       485 --------~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        485 --------SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             --------HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence                    4445566777777777665 456555442 355666666664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.39  E-value=2.3e-08  Score=77.32  Aligned_cols=108  Identities=19%  Similarity=0.309  Sum_probs=55.4

Q ss_pred             CCcEEEcCCCcccchhHhh---cCCCCCcEEEcCCCCCCcchHhhh-CCCCCcEEecCCCccccCCccccccCCccEEEc
Q 009136           46 DLQKLILAHNNIEKLKEDL---RNLPLLTVLNVSHNKLSELPAAIG-ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~l---~~~~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  121 (542)
                      .+..+++++|.+..++++.   ....+|+..++++|.+.++|..|. ..+.++.+++++|.+..+|..+..++.|+.+++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            3555566666655555433   333445555555555555555443 233555555555555555555555555555555


Q ss_pred             CCCcCCcCCccccCCCCCCeEEccCCccccCC
Q 009136          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP  153 (542)
Q Consensus       122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~  153 (542)
                      +.|.+...|+.+..+.++-.|+...+....++
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence            55555555544444444444444444444333

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.39  E-value=2.5e-06  Score=80.88  Aligned_cols=88  Identities=17%  Similarity=0.321  Sum_probs=51.7

Q ss_pred             ccccEEEecCCCCCCCCccccccCCccEEECCCC-cccccChhcccCccCcEEEccCC-cCCCCChhhhhCCCCCcEEEc
Q 009136          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKL  434 (542)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~L  434 (542)
                      ..+++|++++|.+..+|.   -+++|++|.+.+| .++.+|..+  .++|++|++++| .+..++       ++|+.|++
T Consensus        52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L  119 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-------ESVRSLEI  119 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-------cccceEEe
Confidence            556777777777777762   2456777777775 366666543  246777777776 444332       35666666


Q ss_pred             cCCCCcccCCCccCCCCCCceEecCC
Q 009136          435 DNNPLRQVPSDGFKDIPMLQILDLSY  460 (542)
Q Consensus       435 ~~n~i~~~~~~~~~~~~~L~~L~l~~  460 (542)
                      .++....+..    -.++|+.|.+.+
T Consensus       120 ~~n~~~~L~~----LPssLk~L~I~~  141 (426)
T PRK15386        120 KGSATDSIKN----VPNGLTSLSINS  141 (426)
T ss_pred             CCCCCccccc----CcchHhheeccc
Confidence            6554433221    124566666643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1.1e-07  Score=83.71  Aligned_cols=213  Identities=19%  Similarity=0.209  Sum_probs=118.1

Q ss_pred             EEEcCCCcccchh--Hhh-cCCCCCcEEEcCCCCCCcc---hHhhhCCCCCcEEecCCCccccCCccc-cccCCccEEEc
Q 009136           49 KLILAHNNIEKLK--EDL-RNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC  121 (542)
Q Consensus        49 ~L~l~~~~~~~l~--~~l-~~~~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~l~~~~-~~l~~L~~L~l  121 (542)
                      .+.+.++.|....  ..| ..+++++.+|+.+|.+...   ...+.++++|+.|+++.|.+...-... ....+|+.|-+
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL  128 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL  128 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence            5555666554221  122 3566777777777777633   234567777777777777655322222 23456777777


Q ss_pred             CCCcCC--cCCccccCCCCCCeEEccCCccccCC---ccccc-CCCccEEEccCCccccc--chhhhhccccCcEEEcCC
Q 009136          122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP---EDLAD-CSKMSKLDVEGNKLTVL--SNNLIASWTMLTELIASK  193 (542)
Q Consensus       122 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~---~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~  193 (542)
                      .++.+.  .....+..++.++.+.++.|.+..+.   ..... -+.++++...+|....-  -......++++..+.+-+
T Consensus       129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e  208 (418)
T KOG2982|consen  129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE  208 (418)
T ss_pred             cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence            666543  34445556666777777766443211   01111 13555665555543210  011134456677777777


Q ss_pred             cccCccc--cccCCCCcccEEEccCCCCccC--CCCCcCCCCCcEEEcCCCcCcccch-------hccCCCCccEEEcC
Q 009136          194 NLLNGMP--ETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPA-------ELGKLSKLGTLDLH  261 (542)
Q Consensus       194 ~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~-------~~~~~~~L~~L~l~  261 (542)
                      |.++...  +....++.+-.|++..+++...  ...++.++.|..+.++++++.+-..       -++.+++++.|+=+
T Consensus       209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence            7664432  2344455666777777776632  2456778888888888887662211       14566777777543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.38  E-value=1.9e-08  Score=92.53  Aligned_cols=132  Identities=22%  Similarity=0.222  Sum_probs=68.5

Q ss_pred             ccCccCcEEEccCC-cCCCCChhhhh-CCCCCcEEEccCCC-CcccCCCcc-CCCCCCceEecCCCcCCCCC--CCCCCC
Q 009136          400 SSCASLQTLILSRN-KIKDWPDAILT-SLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNIASLPE--NPPFSS  473 (542)
Q Consensus       400 ~~~~~L~~L~l~~~-~l~~~~~~~l~-~l~~L~~L~L~~n~-i~~~~~~~~-~~~~~L~~L~l~~n~~~~~~--~~~~~~  473 (542)
                      .+|..|+.|+.+++ .+++.....++ ++++|+.|.+.+|+ +++.....+ .+++.|+.+++-.+......  ...-.+
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            34555666666555 33333222222 35566666666655 332222212 34556666666655332211  111235


Q ss_pred             CchhHHHHH--hhccccC-----chhhhcCCCCCEEeCCCCccc--ccCccccCCCCCCEEECCCCc
Q 009136          474 LPHLQELYL--RMQLREA-----PTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNN  531 (542)
Q Consensus       474 ~~~L~~L~l--~~~~~~~-----~~~l~~~~~L~~L~l~~~~l~--~l~~~l~~~~~L~~L~l~~~~  531 (542)
                      |+.|+.+.+  |.-++..     ...-.....|..+.+++|+..  ...+.+..|++|+.+++-+|.
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            566666666  2222211     222344677888888888644  335667888888888887774

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=8.5e-08  Score=84.34  Aligned_cols=172  Identities=16%  Similarity=0.214  Sum_probs=107.9

Q ss_pred             hhceeeccCCccc--ccchhhhhccccCCCCCceeeecCCcEEEcCCCccc-chhHhhcCCCCCcEEEcCCCC-CCc--c
Q 009136           10 TSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNK-LSE--L   83 (542)
Q Consensus        10 ~l~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~-~~~--l   83 (542)
                      .++.+|+|+..|+  .+ ..+...            |.+|+.|.+.+..+. .+...+.+..+|+.|+++.|. +++  +
T Consensus       186 Rlq~lDLS~s~it~stl-~~iLs~------------C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~  252 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTL-HGILSQ------------CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL  252 (419)
T ss_pred             hhHHhhcchhheeHHHH-HHHHHH------------HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH
Confidence            4778888888776  33 222222            667888888887776 445567777888888888764 442  2


Q ss_pred             hHhhhCCCCCcEEecCCCccc-c-CCccccc-cCCccEEEcCCCcCC----cCCccccCCCCCCeEEccCCccc--cCCc
Q 009136           84 PAAIGELHMLKSLDVSFNSIM-K-IPDEIGS-ATALVKFDCSSNQLK----ELPSSLGRCLNLSDFKASNNCIT--SLPE  154 (542)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~~~-~-l~~~~~~-l~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~--~l~~  154 (542)
                      .--+.+|..|..|+++-|... . +...+.+ -++|+.|++++++-.    .+......+++|.+||+++|..-  ....
T Consensus       253 ~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~  332 (419)
T KOG2120|consen  253 QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  332 (419)
T ss_pred             HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence            335677888888888877554 1 1111111 356778888776422    33334557888888888887432  3334


Q ss_pred             ccccCCCccEEEccCCcccccchh---hhhccccCcEEEcCCccc
Q 009136          155 DLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLL  196 (542)
Q Consensus       155 ~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~  196 (542)
                      .+.+++.|++|.++.|..-  .+.   .+...+.|.+|++.++.-
T Consensus       333 ~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  333 EFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence            4677788888888776421  111   156667788888777643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.37  E-value=5e-09  Score=102.70  Aligned_cols=127  Identities=26%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             CCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccC
Q 009136          137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ  216 (542)
Q Consensus       137 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  216 (542)
                      ..|...+++.|.+..+...+.-++.++.|+++.|+++...  .+..++.|++|+++.|.+..+|..-..-.+|+.|.+.+
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence            3555666666666666666666667777777776666555  36666677777777776666653211112266666666


Q ss_pred             CCCccCCCCCcCCCCCcEEEcCCCcCccc--chhccCCCCccEEEcCCCcCc
Q 009136          217 NRILSIPSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLK  266 (542)
Q Consensus       217 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~  266 (542)
                      |.++.+ ..+.++.+|+.|+++.|-+.+.  ..-++.+..|+.|++.+|.+-
T Consensus       242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            666554 3455666666666666655522  122444556666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=2.2e-07  Score=81.72  Aligned_cols=199  Identities=19%  Similarity=0.195  Sum_probs=131.4

Q ss_pred             CCCcEEEcCCCCCCcchH--hh-hCCCCCcEEecCCCcccc---CCccccccCCccEEEcCCCcCCcCCccc-cCCCCCC
Q 009136           68 PLLTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLS  140 (542)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~--~~-~~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~  140 (542)
                      .-++.+.+.++.+.+...  .| ..+++++.+||.+|.++.   +...+.++|.|++|+++.|++...-... ....+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            345566777887775533  33 567899999999998884   4444678999999999999887332333 3556899


Q ss_pred             eEEccCCccc--cCCcccccCCCccEEEccCCccc--ccchhhhhccc-cCcEEEcCCcccCccc---cccCCCCcccEE
Q 009136          141 DFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASWT-MLTELIASKNLLNGMP---ETIGSLSRLIRL  212 (542)
Q Consensus       141 ~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~L~~L  212 (542)
                      +|.+.++.+.  .....+..+|.++.|.++.|.+.  .+++....... .++++.+.+|......   .--.-++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            9999988765  55556778889999999888554  23333333332 5666666666543211   111235667777


Q ss_pred             EccCCCCccCC--CCCcCCCCCcEEEcCCCcCcccc--hhccCCCCccEEEcCCCcCc
Q 009136          213 DLHQNRILSIP--SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK  266 (542)
Q Consensus       213 ~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~  266 (542)
                      -+..+.+....  ......+.+.-|+++.+++..++  +++.+++.|..|.++++.+.
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            77777666332  34455666667777777777553  45677788888877777654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=6e-07  Score=78.04  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=17.8

Q ss_pred             ccccCCccEEEcCCCcCC-cCC----ccccCCCCCCeEEccCCccc
Q 009136          110 IGSATALVKFDCSSNQLK-ELP----SSLGRCLNLSDFKASNNCIT  150 (542)
Q Consensus       110 ~~~l~~L~~L~l~~~~~~-~~~----~~~~~~~~L~~L~l~~~~~~  150 (542)
                      +-+||+|++.++++|-+. +.|    ..+.+-+.|.||.+++|++.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            334455555555554443 222    12333444555555554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.29  E-value=7.7e-08  Score=74.48  Aligned_cols=111  Identities=18%  Similarity=0.240  Sum_probs=94.7

Q ss_pred             CCCcEEEcCCCCCCcchH---hhhCCCCCcEEecCCCccccCCccccc-cCCccEEEcCCCcCCcCCccccCCCCCCeEE
Q 009136           68 PLLTVLNVSHNKLSELPA---AIGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFK  143 (542)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~---~~~~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  143 (542)
                      .-+..++|++|.+-.+++   -+....+|+..+|++|.+..+|..|.. .+.+++|++.+|.++++|..+..++.|+.|+
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            456778999998876655   456677888999999999999988765 5689999999999999998899999999999


Q ss_pred             ccCCccccCCcccccCCCccEEEccCCcccccchh
Q 009136          144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN  178 (542)
Q Consensus       144 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  178 (542)
                      ++.|.+...|.-+..+.++-.|+..++.+..++..
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            99999998888888788888999888888877765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.19  E-value=9.2e-07  Score=71.87  Aligned_cols=59  Identities=19%  Similarity=0.452  Sum_probs=21.3

Q ss_pred             cccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecC
Q 009136          399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (542)
Q Consensus       399 ~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  459 (542)
                      |.+|.+|+.+.+.. .+..+....|.++++|+.+.+.++ +..++..+|.++++|+.+.+.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            34444444444442 344444444444444444444432 444444444444444444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.16  E-value=1.2e-07  Score=87.34  Aligned_cols=264  Identities=18%  Similarity=0.123  Sum_probs=165.4

Q ss_pred             CCcEEEcCCCccc---chhHhhcCCCCCcEEEcCCCCCCc---chHhhhCCCCCcEEecCCC-cccc--CCccccccCCc
Q 009136           46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSHNKLSE---LPAAIGELHMLKSLDVSFN-SIMK--IPDEIGSATAL  116 (542)
Q Consensus        46 ~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~-~~~~--l~~~~~~l~~L  116 (542)
                      -|++|.++|+.-.   .+-....++|++++|++.+|...+   +-..-..|++|++|++..| .++.  +-.....|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5888999988654   333445789999999999986432   2223367899999999985 4552  22234568999


Q ss_pred             cEEEcCCCc-CC--cCCccccCCCCCCeEEccCCccc---cCCcccccCCCccEEEccCC-cccccchhh-hhccccCcE
Q 009136          117 VKFDCSSNQ-LK--ELPSSLGRCLNLSDFKASNNCIT---SLPEDLADCSKMSKLDVEGN-KLTVLSNNL-IASWTMLTE  188 (542)
Q Consensus       117 ~~L~l~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~-~~~~~~L~~  188 (542)
                      ++++++.|. +.  .+......+.+++.+...+|.-.   .+...-+.+.-+..+++..+ .+++.+... -.++..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            999999885 33  23334455666777766665322   22222344555666665555 334433222 344667888


Q ss_pred             EEcCCcccC-c--cccccCCCCcccEEEccCCCC-cc--CCCCCcCCCCCcEEEcCCCcCc---ccchhccCCCCccEEE
Q 009136          189 LIASKNLLN-G--MPETIGSLSRLIRLDLHQNRI-LS--IPSSISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLD  259 (542)
Q Consensus       189 L~l~~~~~~-~--~~~~~~~~~~L~~L~l~~~~~-~~--~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~L~~L~  259 (542)
                      ++.+++... .  +..--.+..+|+.+.+.+++. +.  +...-.+++.|+.+++.++...   .+...-.+++.|+.+.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            888876542 1  222235678899999998863 21  1122356888999999988655   2334446788999999


Q ss_pred             cCCCc-Ccccchhh-----h-cccccEEEccCCCCCC--CChhhcCcCCCcEEEcCCCc
Q 009136          260 LHSNQ-LKEYCVEA-----C-QLRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNP  309 (542)
Q Consensus       260 l~~~~-i~~~~~~~-----~-~~~L~~l~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~  309 (542)
                      ++.|. +++.....     . ...++.+.+++++...  ....+..+++|+.+++-++.
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            99874 33321111     1 1237888888886543  23346778888888887764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.13  E-value=4.6e-06  Score=69.49  Aligned_cols=121  Identities=20%  Similarity=0.251  Sum_probs=54.8

Q ss_pred             CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCcccc-ccCCccEEEcCCCc
Q 009136           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFDCSSNQ  125 (542)
Q Consensus        47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~  125 (542)
                      =+++++++..+..+..-=.-..+...+|+++|++..+ ..|.+++.|..|.++.|.|+.+...+. .+++|+.|.+.+|+
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            3445555544443322001122344555555555433 244455555555555555555544433 24455555555555


Q ss_pred             CCcCC--ccccCCCCCCeEEccCCccccCCc----ccccCCCccEEEcc
Q 009136          126 LKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVE  168 (542)
Q Consensus       126 ~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~l~  168 (542)
                      +..+.  ..+..|+.|++|.+-+|.+..-..    -+..+++|+.||+.
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            54332  223344455555544444442211    13344555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.13  E-value=4.4e-06  Score=52.29  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=19.6

Q ss_pred             CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc
Q 009136           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL   83 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l   83 (542)
                      +|++|++++|.++.+|..+.++++|+.|++++|.++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555554455555555555555555543

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.10  E-value=2.2e-06  Score=69.62  Aligned_cols=101  Identities=19%  Similarity=0.427  Sum_probs=57.0

Q ss_pred             cccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCC
Q 009136          375 EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML  453 (542)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L  453 (542)
                      .+..+.+|+.+.+.+ .+..++. +|.++++|+.+.+.++ +..++..+|..+++|+.+.+.+ .+..++..+|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344566788888775 4556554 5778888888888774 7777777788888888888865 6666777777888888


Q ss_pred             ceEecCCCcCCCCCCCCCCCCchhHHH
Q 009136          454 QILDLSYNIASLPENPPFSSLPHLQEL  480 (542)
Q Consensus       454 ~~L~l~~n~~~~~~~~~~~~~~~L~~L  480 (542)
                      +.+++..+ +..+....|.++ +|+.+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i  108 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEI  108 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EE
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEE
Confidence            88888654 444444445444 34333

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=3.1e-06  Score=87.35  Aligned_cols=128  Identities=18%  Similarity=0.194  Sum_probs=64.4

Q ss_pred             cCCcEEEcCCCccc--chhHhh-cCCCCCcEEEcCCCCCC--cchHhhhCCCCCcEEecCCCccccCCccccccCCccEE
Q 009136           45 VDLQKLILAHNNIE--KLKEDL-RNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF  119 (542)
Q Consensus        45 ~~L~~L~l~~~~~~--~l~~~l-~~~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  119 (542)
                      .+|+.|+++|...-  .-+..+ ..+|.|++|.+.+..+.  ++.....++++|.+||+|+++++.+ ..++.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            35666666554322  222222 34566666666655444  2223345556666666666666555 445566666666


Q ss_pred             EcCCCcCCcCC--ccccCCCCCCeEEccCCccccCC-------cccccCCCccEEEccCCccc
Q 009136          120 DCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLP-------EDLADCSKMSKLDVEGNKLT  173 (542)
Q Consensus       120 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~-------~~~~~~~~L~~L~l~~~~~~  173 (542)
                      .+++-.+....  ..++++++|+.||++.......+       +.-..+|+|+.||.+++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            66554444221  34555666666666654332111       11223456666665555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.02  E-value=8.9e-06  Score=67.84  Aligned_cols=106  Identities=27%  Similarity=0.384  Sum_probs=75.1

Q ss_pred             cEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCC
Q 009136          360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL  439 (542)
Q Consensus       360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i  439 (542)
                      +++++++..+..+...-...-....+++++|++..++. |.+++.|..|.+.+|.|+.+.+..-..+|+|+.|.+.+|.|
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            45566665555443311123467788888888877653 67888888888888888888877666778888888888887


Q ss_pred             cccCC-CccCCCCCCceEecCCCcCCCC
Q 009136          440 RQVPS-DGFKDIPMLQILDLSYNIASLP  466 (542)
Q Consensus       440 ~~~~~-~~~~~~~~L~~L~l~~n~~~~~  466 (542)
                      .++.. ..+..||+|++|.+-+|.+...
T Consensus       101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen  101 QELGDLDPLASCPKLEYLTLLGNPVEHK  128 (233)
T ss_pred             hhhhhcchhccCCccceeeecCCchhcc
Confidence            65432 3467788888888888876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.02  E-value=6.7e-06  Score=84.89  Aligned_cols=131  Identities=17%  Similarity=0.187  Sum_probs=98.9

Q ss_pred             HHHhhceeeccCCccc--ccchhhhhccccCCCCCceeeecCCcEEEcCCCccc--chhHhhcCCCCCcEEEcCCCCCCc
Q 009136            7 AARTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSE   82 (542)
Q Consensus         7 ~~~~l~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~l~~~~~L~~L~l~~~~~~~   82 (542)
                      ..++|+.||++|.+.-  .=|..+..-            +|.|+.|.+++-.+.  ++...+.++|+|+.||+++++++.
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~------------LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n  187 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTM------------LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN  187 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhh------------CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC
Confidence            3466899999987543  222233332            789999999997765  455677899999999999999998


Q ss_pred             chHhhhCCCCCcEEecCCCccccCC--ccccccCCccEEEcCCCcCCcCCc-------cccCCCCCCeEEccCCccc
Q 009136           83 LPAAIGELHMLKSLDVSFNSIMKIP--DEIGSATALVKFDCSSNQLKELPS-------SLGRCLNLSDFKASNNCIT  150 (542)
Q Consensus        83 l~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~  150 (542)
                      + ..++++++|+.|.+.+=.+..-.  ..+-++++|+.||+|.......+.       .-..+++||.||.+++.+.
T Consensus       188 l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  188 L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            8 78899999999999875555322  246679999999999876553331       2235889999999998776

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=7.3e-05  Score=71.13  Aligned_cols=73  Identities=14%  Similarity=0.273  Sum_probs=40.6

Q ss_pred             hcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCC-ccccCCccccccCCccEEEcCCC-cCCcCCccccCCCCCCe
Q 009136           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSD  141 (542)
Q Consensus        64 l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~L~~  141 (542)
                      +..+++++.|++++|.++.+| .  --.+|++|.+++| .++.+|..+.  ++|++|++++| .+..+|.      +|++
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccce
Confidence            445566777777777666665 1  1234777777664 3445554332  46667777666 4444443      3555


Q ss_pred             EEccCC
Q 009136          142 FKASNN  147 (542)
Q Consensus       142 L~l~~~  147 (542)
                      |++..+
T Consensus       117 L~L~~n  122 (426)
T PRK15386        117 LEIKGS  122 (426)
T ss_pred             EEeCCC
Confidence            555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=9.8e-06  Score=70.96  Aligned_cols=77  Identities=19%  Similarity=0.238  Sum_probs=47.4

Q ss_pred             CccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCC-CCCCCCchhHHH
Q 009136          402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPHLQEL  480 (542)
Q Consensus       402 ~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L  480 (542)
                      +.+.++|++++|.++++...  ..++.|+.|.|+-|+|+.+.+  +..|++|++|.|+.|.+.++.. ..+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsic--~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISIC--EKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHHH--HhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44556667777776665442  566777777777776666543  5666677777776666655432 134456666666


Q ss_pred             HH
Q 009136          481 YL  482 (542)
Q Consensus       481 ~l  482 (542)
                      .|
T Consensus        94 WL   95 (388)
T KOG2123|consen   94 WL   95 (388)
T ss_pred             hh
Confidence            66

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=9.9e-06  Score=70.94  Aligned_cols=87  Identities=23%  Similarity=0.248  Sum_probs=71.5

Q ss_pred             cCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCC-CccCCCCCCceEe
Q 009136          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILD  457 (542)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~L~~L~  457 (542)
                      +.+.++|++.+|+++++.- ...++.|+.|.|+-|+|+.+.+  |..|++|++|.|+.|.|.++.. ..+.++|+|+.|.
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4578999999999988753 3678999999999999998766  6899999999999999987654 3468899999999


Q ss_pred             cCCCcCCCCCC
Q 009136          458 LSYNIASLPEN  468 (542)
Q Consensus       458 l~~n~~~~~~~  468 (542)
                      |..|...+..+
T Consensus        95 L~ENPCc~~ag  105 (388)
T KOG2123|consen   95 LDENPCCGEAG  105 (388)
T ss_pred             hccCCcccccc
Confidence            99886654433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.34  E-value=5.8e-05  Score=65.99  Aligned_cols=85  Identities=26%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             cCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCC--ccc-cCCccccccCCccEEEcCCCcCCcCC--ccccCCCCC
Q 009136           65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNL  139 (542)
Q Consensus        65 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L  139 (542)
                      ..+..|+.+++.++.++++ ..+..+++|++|.++.|  .+. .++.....+|+|+++++++|++..+.  ..+..+.+|
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3445555555655555544 34556667777777776  333 34444455677777777777665321  233444455


Q ss_pred             CeEEccCCccc
Q 009136          140 SDFKASNNCIT  150 (542)
Q Consensus       140 ~~L~l~~~~~~  150 (542)
                      ..|++..|...
T Consensus       119 ~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 KSLDLFNCSVT  129 (260)
T ss_pred             hhhhcccCCcc
Confidence            55555555433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.00011  Score=64.32  Aligned_cols=105  Identities=22%  Similarity=0.247  Sum_probs=66.4

Q ss_pred             ccccCCccEEECCCCcccccChhcccCccCcEEEccCC--cCCC-CChhhhhCCCCCcEEEccCCCCcccCC-CccCCCC
Q 009136          376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN--KIKD-WPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIP  451 (542)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~--~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~  451 (542)
                      ......++.+++.++.++.+.. +..+|+|+.|.++.|  .+.. +... ...+|+|+++++++|++..+.. ..+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhc
Confidence            3344567777777777766543 567888888999888  4443 3332 2456889999998888765332 2356677


Q ss_pred             CCceEecCCCcCCCCCC---CCCCCCchhHHHHH
Q 009136          452 MLQILDLSYNIASLPEN---PPFSSLPHLQELYL  482 (542)
Q Consensus       452 ~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l  482 (542)
                      +|..|++.+|..+....   ..|.-+|+|+.++-
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            78888888886654221   12344555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.83  E-value=0.00037  Score=36.09  Aligned_cols=21  Identities=38%  Similarity=0.683  Sum_probs=13.4

Q ss_pred             CCCEEECCCCcCCcCCCCCCC
Q 009136          521 SLTELDLSDNNISALPPELVS  541 (542)
Q Consensus       521 ~L~~L~l~~~~l~~lp~~~~~  541 (542)
                      +|+.|++++|+|+.+|+++.+
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356667777766666666543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.83  E-value=0.00034  Score=71.21  Aligned_cols=171  Identities=22%  Similarity=0.195  Sum_probs=100.9

Q ss_pred             HHHHHHhhceeeccCC-cccccc-hhhhhccccCCCCCceeeecCCcEEEcCCC-c-cc----chhHhhcCCCCCcEEEc
Q 009136            4 ILKAARTSGSLNLSNR-SLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHN-N-IE----KLKEDLRNLPLLTVLNV   75 (542)
Q Consensus         4 ~~~~~~~l~~l~l~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-~~----~l~~~l~~~~~L~~L~l   75 (542)
                      +.+.+.+++.+.+.++ .+.+.. ..+...            +++|++|+++++ . +.    ........+++|+.|++
T Consensus       183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l  250 (482)
T KOG1947|consen  183 LLSSCPLLKRLSLSGCSKITDDSLDALALK------------CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL  250 (482)
T ss_pred             HHhhCchhhHhhhcccccCChhhHHHHHhh------------CchhheecccCcccccccchhHhhhhhhhcCCcCccch
Confidence            4445677888888877 455422 122222            789999999873 1 11    12234567799999999


Q ss_pred             CCCC-CCcc--hHhhhCCCCCcEEecCCCc-cc--cCCccccccCCccEEEcCCCcCC---cCCccccCCCCCCeEEccC
Q 009136           76 SHNK-LSEL--PAAIGELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASN  146 (542)
Q Consensus        76 ~~~~-~~~l--~~~~~~l~~L~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~  146 (542)
                      +.+. +++.  ......|++|++|.+..|. ++  .+......+++|++|++++|...   .+.....++++++.+.+..
T Consensus       251 ~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  251 SGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            9988 5533  2223458999999988776 55  34444567899999999988653   1223344577777765443


Q ss_pred             CccccCCcccccCCCccEEEccCCcc---cccchhhhhccccCcEEEcCCcc
Q 009136          147 NCITSLPEDLADCSKMSKLDVEGNKL---TVLSNNLIASWTMLTELIASKNL  195 (542)
Q Consensus       147 ~~~~~l~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~L~~L~l~~~~  195 (542)
                      ...         +..++.+.+.+...   ..........+++++.+.+..+.
T Consensus       331 ~~~---------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  331 LNG---------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             cCC---------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            321         33444444433221   12222234556666666665554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.43  E-value=0.00077  Score=68.60  Aligned_cols=144  Identities=29%  Similarity=0.318  Sum_probs=73.6

Q ss_pred             cCCccEEECCCCc-ccc--cChhcccCccCcEEEccCCcCC-CC-ChhhhhCCCCCcEEEccCCC--------------C
Q 009136          379 AGEITKLDLSRNS-IQE--LPPELSSCASLQTLILSRNKIK-DW-PDAILTSLSSLSCLKLDNNP--------------L  439 (542)
Q Consensus       379 ~~~L~~L~l~~~~-l~~--l~~~~~~~~~L~~L~l~~~~l~-~~-~~~~l~~l~~L~~L~L~~n~--------------i  439 (542)
                      |++|++|.+.+|. +++  +-.....|++|++|++++|... +. .......+++|+.|.+....              -
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~  347 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT  347 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence            4556666655554 333  2222345666666666655332 21 11112334444444433221              1


Q ss_pred             ---cccCCCccCCCCCCceEecCCCcCCCCC-CCCCCCCchh-HHHHHhhccccCchhhhcCCCCCEEeCCCCcccccC-
Q 009136          440 ---RQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHL-QELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP-  513 (542)
Q Consensus       440 ---~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L-~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~-  513 (542)
                         ..........+++++.+.+..+...... ...+.+|+.| +.+.++-.         ....++.|+++.|...... 
T Consensus       348 ~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~---------~~~~l~~L~l~~~~~~t~~~  418 (482)
T KOG1947|consen  348 LTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLC---------RSDSLRVLNLSDCRLVTDKG  418 (482)
T ss_pred             cCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhc---------cCCccceEecccCccccccc
Confidence               1122223567888888888888754443 2456677777 44333111         1122788888888644321 


Q ss_pred             -ccccC-CCCCCEEECCCCc
Q 009136          514 -EGFKN-LTSLTELDLSDNN  531 (542)
Q Consensus       514 -~~l~~-~~~L~~L~l~~~~  531 (542)
                       ..... +.+++.+++.+++
T Consensus       419 l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  419 LRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             hHHHhhhhhccccCCccCcc
Confidence             11111 6777888888775

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.39  E-value=0.0018  Score=30.95  Aligned_cols=17  Identities=47%  Similarity=0.841  Sum_probs=8.5

Q ss_pred             CCCCEEECCCCcCCcCC
Q 009136          520 TSLTELDLSDNNISALP  536 (542)
Q Consensus       520 ~~L~~L~l~~~~l~~lp  536 (542)
                      ++|+.|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35666777777766665

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.27  E-value=0.002  Score=33.33  Aligned_cols=22  Identities=59%  Similarity=0.853  Sum_probs=18.4

Q ss_pred             CCCEEeCCCCcccccCccccCC
Q 009136          498 QLRILDLSQNSLQSIPEGFKNL  519 (542)
Q Consensus       498 ~L~~L~l~~~~l~~l~~~l~~~  519 (542)
                      +|++||+++|+++.+|..|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999998877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.10  E-value=0.0043  Score=33.65  Aligned_cols=23  Identities=52%  Similarity=0.834  Sum_probs=18.2

Q ss_pred             CCCCCEEECCCCcCCcCCCCCCC
Q 009136          519 LTSLTELDLSDNNISALPPELVS  541 (542)
Q Consensus       519 ~~~L~~L~l~~~~l~~lp~~~~~  541 (542)
                      +++|+.|++++|+|+.+|+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888888887664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.10  E-value=0.0043  Score=33.65  Aligned_cols=23  Identities=52%  Similarity=0.834  Sum_probs=18.2

Q ss_pred             CCCCCEEECCCCcCCcCCCCCCC
Q 009136          519 LTSLTELDLSDNNISALPPELVS  541 (542)
Q Consensus       519 ~~~L~~L~l~~~~l~~lp~~~~~  541 (542)
                      +++|+.|++++|+|+.+|+..|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46788888888888888887664

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.81  E-value=0.00013  Score=72.31  Aligned_cols=179  Identities=25%  Similarity=0.278  Sum_probs=109.6

Q ss_pred             hceeeccCCcccccc-hhhhhccccCCCCCceeeecCCcEEEcCCCccc-----chhHhhcCC-CCCcEEEcCCCCCC--
Q 009136           11 SGSLNLSNRSLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNL-PLLTVLNVSHNKLS--   81 (542)
Q Consensus        11 l~~l~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~-~~L~~L~l~~~~~~--   81 (542)
                      +..+++.++.+.+-+ +.+.+.+..         .+.|..|++++|.+.     .+...+... ..+++|++..|.++  
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t---------~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~  159 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKT---------LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE  159 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcc---------cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc
Confidence            566777777777433 334444444         677888888888776     222334433 45666777777666  


Q ss_pred             ---cchHhhhCCCCCcEEecCCCccc-----cCCcccc----ccCCccEEEcCCCcCCc-----CCccccCCCC-CCeEE
Q 009136           82 ---ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKE-----LPSSLGRCLN-LSDFK  143 (542)
Q Consensus        82 ---~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~----~l~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~  143 (542)
                         .+.+.+....+++.++++.|.+.     .++..+.    ...++++|++.+|.++.     +...+...+. ++.++
T Consensus       160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~  239 (478)
T KOG4308|consen  160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD  239 (478)
T ss_pred             chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence               23446666778888888877654     2222333    35677888888877661     1123344444 66677


Q ss_pred             ccCCccccC-----CcccccC-CCccEEEccCCcccccchh----hhhccccCcEEEcCCcccCc
Q 009136          144 ASNNCITSL-----PEDLADC-SKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNG  198 (542)
Q Consensus       144 l~~~~~~~l-----~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~  198 (542)
                      +..|.+.+.     ...+... ..++++++..|++......    ....+..++++.+..|.+..
T Consensus       240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            777766522     2334444 6778888888888754433    24455678888888887743

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.46  E-value=0.0087  Score=28.57  Aligned_cols=17  Identities=59%  Similarity=0.870  Sum_probs=11.6

Q ss_pred             CCCCEEeCCCCcccccC
Q 009136          497 QQLRILDLSQNSLQSIP  513 (542)
Q Consensus       497 ~~L~~L~l~~~~l~~l~  513 (542)
                      ++|+.|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            57999999999998875

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.14  E-value=0.00039  Score=68.89  Aligned_cols=174  Identities=28%  Similarity=0.328  Sum_probs=126.7

Q ss_pred             CcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCCcc-----hHhhhCC-CCCcEEecCCCccc-----cCCccc
Q 009136           47 LQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSEL-----PAAIGEL-HMLKSLDVSFNSIM-----KIPDEI  110 (542)
Q Consensus        47 L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~~l-----~~~~~~l-~~L~~L~l~~~~~~-----~l~~~~  110 (542)
                      +..|.+.+|.+.     .+..++...+.|..|++++|.+...     ...+... ..+++|++..|.++     .+.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            788888888776     4567889999999999999998822     2233333 55788888888777     355567


Q ss_pred             cccCCccEEEcCCCcCC-----cCCcccc----CCCCCCeEEccCCcccc-----CCcccccCCC-ccEEEccCCccccc
Q 009136          111 GSATALVKFDCSSNQLK-----ELPSSLG----RCLNLSDFKASNNCITS-----LPEDLADCSK-MSKLDVEGNKLTVL  175 (542)
Q Consensus       111 ~~l~~L~~L~l~~~~~~-----~~~~~~~----~~~~L~~L~l~~~~~~~-----l~~~~~~~~~-L~~L~l~~~~~~~~  175 (542)
                      .....++.++++.|.+.     .+++.+.    ...++++|.+++|.++.     +...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            77889999999999875     2223333    47789999999998762     2223455555 77799999888765


Q ss_pred             chhh----hhcc-ccCcEEEcCCcccCc-----cccccCCCCcccEEEccCCCCc
Q 009136          176 SNNL----IASW-TMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL  220 (542)
Q Consensus       176 ~~~~----~~~~-~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  220 (542)
                      ....    +... ..+++++++.|.++.     +.+.+..++.++.+.++.|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3322    3333 567899999999853     4566777889999999999876

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.07  E-value=0.01  Score=50.14  Aligned_cols=79  Identities=24%  Similarity=0.113  Sum_probs=46.3

Q ss_pred             cCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCC-cccCCCcc-CCCCCCceEecCCC-cCCCCCCCCCCCCchhHHH
Q 009136          404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL-RQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL  480 (542)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i-~~~~~~~~-~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L  480 (542)
                      .++.+|-+++.|...+...+..+++++.|.+.+|.- .+..-+.+ ...++|+.|++++| .+++.+-.++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456677777777766666677777777777776652 21111101 13467777777766 5555444455556666666


Q ss_pred             HH
Q 009136          481 YL  482 (542)
Q Consensus       481 ~l  482 (542)
                      .+
T Consensus       182 ~l  183 (221)
T KOG3864|consen  182 HL  183 (221)
T ss_pred             Hh
Confidence            55

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.97  E-value=0.0014  Score=56.35  Aligned_cols=79  Identities=22%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             CcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCc
Q 009136           93 LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK  171 (542)
Q Consensus        93 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~  171 (542)
                      .+.||++.+.+..+...|+.++.+..++++.+++..+|..++....+++++...|+.+..|.+++..+++++++..++.
T Consensus        44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            3333443333333333344444444444444444444444444444444444444444444444444444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.19  E-value=0.0028  Score=54.51  Aligned_cols=93  Identities=20%  Similarity=0.246  Sum_probs=82.5

Q ss_pred             cchh-HhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCC
Q 009136           58 EKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC  136 (542)
Q Consensus        58 ~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  136 (542)
                      .++| ..+..+..-+.||++.+....+...|+.+..|..|+++.+.+..+|.++.....+.++.+..|..+..|.+++..
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~  110 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE  110 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc
Confidence            3555 457788899999999998887777788888999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEccCCccc
Q 009136          137 LNLSDFKASNNCIT  150 (542)
Q Consensus       137 ~~L~~L~l~~~~~~  150 (542)
                      +++++++..++.+.
T Consensus       111 ~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFF  124 (326)
T ss_pred             CCcchhhhccCcch
Confidence            99999999998754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.03  E-value=0.018  Score=48.72  Aligned_cols=81  Identities=25%  Similarity=0.226  Sum_probs=51.4

Q ss_pred             CCccEEECCCCcccccC-hhcccCccCcEEEccCC-cCCCCChhhhhC-CCCCcEEEccCCC-CcccCCCccCCCCCCce
Q 009136          380 GEITKLDLSRNSIQELP-PELSSCASLQTLILSRN-KIKDWPDAILTS-LSSLSCLKLDNNP-LRQVPSDGFKDIPMLQI  455 (542)
Q Consensus       380 ~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~-l~~L~~L~L~~n~-i~~~~~~~~~~~~~L~~  455 (542)
                      ..++.++-+++.+.... +-+..++.++.|.+.+| .+.+...+-+++ .++|+.|++++|+ |++-.-.++..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            45677777776654321 23556677777777777 344433333333 4788888888876 66655555677788888


Q ss_pred             EecCC
Q 009136          456 LDLSY  460 (542)
Q Consensus       456 L~l~~  460 (542)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            87764

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.58  E-value=0.084  Score=28.20  Aligned_cols=18  Identities=44%  Similarity=0.803  Sum_probs=14.8

Q ss_pred             CCCCEEECCCCcCCcCCC
Q 009136          520 TSLTELDLSDNNISALPP  537 (542)
Q Consensus       520 ~~L~~L~l~~~~l~~lp~  537 (542)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468888888888888887

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.89  E-value=0.18  Score=27.16  Aligned_cols=19  Identities=32%  Similarity=0.485  Sum_probs=9.2

Q ss_pred             cCcEEEccCCcCCCCChhh
Q 009136          404 SLQTLILSRNKIKDWPDAI  422 (542)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~  422 (542)
                      +|+.|++++|.++.++...
T Consensus         3 ~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCEEECCCCcCCcCCHHH
Confidence            4445555555554444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.89  E-value=0.18  Score=27.16  Aligned_cols=19  Identities=32%  Similarity=0.485  Sum_probs=9.2

Q ss_pred             cCcEEEccCCcCCCCChhh
Q 009136          404 SLQTLILSRNKIKDWPDAI  422 (542)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~  422 (542)
                      +|+.|++++|.++.++...
T Consensus         3 ~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCEEECCCCcCCcCCHHH
Confidence            4445555555554444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.15  E-value=0.077  Score=27.97  Aligned_cols=16  Identities=50%  Similarity=0.540  Sum_probs=7.1

Q ss_pred             ccCcEEEccCCcCCCC
Q 009136          403 ASLQTLILSRNKIKDW  418 (542)
Q Consensus       403 ~~L~~L~l~~~~l~~~  418 (542)
                      ++|++|++++|.+++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4455555555555443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.11  E-value=0.82  Score=24.61  Aligned_cols=16  Identities=56%  Similarity=0.787  Sum_probs=11.2

Q ss_pred             CCCCEEECCCCcCCcC
Q 009136          520 TSLTELDLSDNNISAL  535 (542)
Q Consensus       520 ~~L~~L~l~~~~l~~l  535 (542)
                      ++|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            5677777777777654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=80.64  E-value=0.87  Score=24.44  Aligned_cols=17  Identities=41%  Similarity=0.530  Sum_probs=8.6

Q ss_pred             CccCcEEEccCC-cCCCC
Q 009136          402 CASLQTLILSRN-KIKDW  418 (542)
Q Consensus       402 ~~~L~~L~l~~~-~l~~~  418 (542)
                      |++|++|++++| .+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            345555555555 34443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	542
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-07
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		1e-06
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		2e-06
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		8e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-05
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		3e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		8e-04
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		3e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		3e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		3e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		3e-05
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		5e-05
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		6e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		8e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		8e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		9e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		9e-05
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		9e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		1e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		3e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		3e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		3e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		3e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		4e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		4e-04
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		6e-04
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		6e-04
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		6e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           LD+   ++  +S N I  +  LT L  + N L  +P  I +LS L  LDL  NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  C  L  FY  +N ++ LP E G L  L  L +  N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 46  DLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           D   L L +N+I +L K+D + L  L  L + +NK+S++   A   L  L+ L +S N +
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCI--TSLPEDLADCS 160
           ++IP  + S+  LV+     N+++++P  +   L N++  +   N +  +       D  
Sbjct: 115 VEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRI 219
           K++ L +   KLT +  +L  +   L EL    N +  +  E +   S+L RL L  N+I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 220 LSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             I   S+S   +L E ++ NN LS +PA L  L  L  + LH+N + +  V
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL---SRNSI 392
           N  +    + + L  + + +   +K+L L+   LS++PS+ +    +TKL L   + N +
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKL 73
Query: 393 QELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
           Q LP  +     +L+TL ++ NK++  P  +            D N L+ +P   F  + 
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQ 510
            L  L L YN + SLP+   F  L  L+EL L                        N L+
Sbjct: 134 KLTYLSLGYNELQSLPKG-VFDKLTSLKELRLY----------------------NNQLK 170
Query: 511 SIPEG-FKNLTSLTELDLSDNNISALP 536
            +PEG F  LT L  L L +N +  +P
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVP 197

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 31/207 (14%)
Query: 337 EDSEASTTKEDLITMATRLSVTSKEL-SLEGM--NLSAIPS--EIWEAGEITKLDLSRNS 391
           +D+ A T K +L   +   +VT  EL S++ +  N S I S   I     +  L L  N 
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK 74
Query: 392 IQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
           + ++   L    +L  LIL+ N+++  P+ +              N L+ +P   F  + 
Sbjct: 75  LHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133
Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQ 510
            L  L+L++N + SLP+   F  L +L EL L                      S N LQ
Sbjct: 134 NLTYLNLAHNQLQSLPKGV-FDKLTNLTELDL----------------------SYNQLQ 170
Query: 511 SIPEG-FKNLTSLTELDLSDNNISALP 536
           S+PEG F  LT L +L L  N + ++P
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQLKSVP 197

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L++ +NN++ L  DL   PLL  L VS+N+L +LP  +     LK +DV  NS+ K+
Sbjct: 113 LKSLLVDNNNLKALS-DLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL 168
Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
           PD   S   +      +NQL+ELP  L     L+   A NN +  LP DL        L 
Sbjct: 169 PDLPPSLEFIA---AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DLP-------LS 216
Query: 167 VEGNKLTVLSNNL------IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220
           +E     V  NN+      + +   LT + A  NLL  +P+   SL  L   D +   + 
Sbjct: 217 LES---IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP 273
Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            +P S++        + G   LS LP        L  L+  SN+++  C
Sbjct: 274 ELPQSLTFLDVSENIFSG---LSELPP------NLYYLNASSNEIRSLC 313

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L+VS N+L+ LPA   EL  L + +    S+  +P      + L +   S NQL 
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSDNQLA 194
Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   A  S + +L V GN+LT L            
Sbjct: 195 SLPTLPS---ELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPV---------- 238
Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
                      +P      S L  L +  NR+ S+P   SG  SL+ +    N L+ LP 
Sbjct: 239 -----------LP------SELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPE 278
Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQ 274
            L  LS   T++L  N L E  ++A +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           + P E      +V+  CS+  LK LP  + R  ++++     N  T +P++L++   ++ 
Sbjct: 3   RCPTECTCLDTVVR--CSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTL 58
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           +D+  N+++ LSN   ++ T L  LI S N L  + P T   L  L  L LH N I  +P
Sbjct: 59  IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 224 -SSISGCCSLAEFYMGNNAL 242
             + +   +L+   +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
           L + + ++ L + GN+L  L N +    T L EL+  +N L  +P+ +   L+ L  L L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           + N++ S+P  +     +L    + NN L +LP     KL++L  L L+ NQLK
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
           + L+L G  L  I S + E   +T L L+ N +Q LP        +L+ L+L  N+++  
Sbjct: 66  RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +             +N L+ +P   F  +  L  LDL  N + SLPE   F  L  L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           ++L L                      + N L+S+P+G F  LTSLT + L +N
Sbjct: 184 KQLSL----------------------NDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-- 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 128 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 178
Query: 125 QLKELPSS---------LGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
           +LK L  S         + RC+NL     +SNN  T +P  L DCS +  LD+ GNKL+ 
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SL 232
             +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 233 AEFYM-GNNALSALPAELG 250
               + GN+   A+P   G
Sbjct: 297 TGLDLSGNHFYGAVPPFFG 315

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-- 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 125 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 175
Query: 125 QLKELPSS---------LGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
           +LK L  S         + RC+NL     +SNN  T +P  L DCS +  LD+ GNKL+ 
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SL 232
             +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 233 AEFYM-GNNALSALPAELG 250
               + GN+   A+P   G
Sbjct: 294 TGLDLSGNHFYGAVPPFFG 312

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199
           ++ + ++  +TS+P  +   S  ++L++E NKL  L + +    T LT+L  S+N +  +
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 200 PETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLG 256
           P+ +   L++L  L LH+N++ S+P+ +      L E  +  N L ++P     +L+ L 
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 257 TLDLHSNQLKEYC 269
            + LH+N     C
Sbjct: 128 KIWLHTNPWDCSC 140

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
           +E     + L ++ T +  ++  L LE   L ++P  +++   ++TKL LS+N IQ LP 
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 398 E-LSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQIL 456
                   L  L L  NK++  P+ +            D N L+ VP   F  +  LQ +
Sbjct: 70  GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 457 DLSYN 461
            L  N
Sbjct: 130 WLHTN 134

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSR 208
           TS+P  +   ++ + LD+E N L  L N +    T LT+L    N L  +P  +   L+ 
Sbjct: 20  TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           L  L+L  N++ S+P+ +      L E  +  N L +LP     KL++L  L L+ NQLK
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 341

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 32/236 (13%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
           N+ S+    +++L  +   +S  ++ L+L    +  I    ++    +  L LSRN I+ 
Sbjct: 43  NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
           +     +  A+L TL L  N++   P+               NNP+  +PS  F  IP L
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 454 QILDLS--YNIASLPENPPFSSLPHLQELYLRM-QLREAPTXXXXXXXXXXXXXSQNSLQ 510
           + LDL     ++ + E   F  L +L+ L L M  LRE P              S N L 
Sbjct: 163 RRLDLGELKRLSYISEGA-FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL-SGNHLS 220
Query: 511 SIPEG-------------------------FKNLTSLTELDLSDNNISALPPELVS 541
           +I  G                         F NL SL E++L+ NN++ LP +L +
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 155
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 209
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 97  DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 155
           D S   + ++PD++   T +   + + NQL+ LP++   R   L+      N I+ L  +
Sbjct: 15  DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 156 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 211
           L  C K+  L V   + N+L+ LS+   A  T LTEL    N +  +          LI 
Sbjct: 73  L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 267
           LDL  N + S    +     +L E  + NN + AL +E   +   S L  L+L SNQ+KE
Sbjct: 131 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 190
Query: 268 Y---CVEA 272
           +   C  A
Sbjct: 191 FSPGCFHA 198

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 149
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 203
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 30/235 (12%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
           N+ S+   T+  L  +   +   ++ L+L   N+  I ++ +     +  L L RNSI++
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
           +     +  ASL TL L  N +   P                NNP+  +PS  F  +P L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 454 QILDLS----------------YNI-------ASLPENPPFSSLPHLQELYLRM----QL 486
             LDL                 +N+        ++ + P  + L  L+EL +      ++
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 487 REAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 541
           R                 SQ SL      F  L SL EL+L+ NN+S+LP +L +
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNNLSSLPHDLFT 287

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 124 NQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIA 181
           NQ+ +L P      +NL +    +N + +LP  + D  ++++ LD+  N+LTVL + +  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN 240
               L EL    N L  +P  I  L+ L  L L QN++ SIP  +     SL   Y+  N
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 6/163 (3%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 429
           +A PS+   +G  T +D        +P  + + A  Q L L  N+I      +       
Sbjct: 11  AACPSQCSCSG--TTVDCRSKRHASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINL 66
Query: 430 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLRE 488
                 +N L  +P   F  +  L +LDL  N  ++  +  F  L HL+EL++   +L E
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 489 APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            P               QN L+SIP G F  L+SLT   L  N
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 30/235 (12%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
           N+ S    T+ +L  +   + V ++ L+L+  ++  I ++ ++    +  L LS+N +++
Sbjct: 14  NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
           +     +   SL TL L  N++   P                NNP+  +PS  F  +P L
Sbjct: 74  IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 454 QILDL-----------------------SYNIASLPENPPFSSLPHLQELYL---RMQLR 487
           + LDL                       +  + +L + P  ++L  L+EL L   R+ L 
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 488 EAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELVS 541
             P                  + +I    F +L SL EL+LS NN+ +LP +L +
Sbjct: 194 R-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 340

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 30/235 (12%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 394
           N+ S    T+ +L  +   + V ++ L+L+  ++  I ++ ++    +  L LS+N +++
Sbjct: 14  NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
           +     +   SL TL L  N++   P                NNP+  +PS  F  +P L
Sbjct: 74  IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 454 QILDL-----------------------SYNIASLPENPPFSSLPHLQELYL---RMQLR 487
           + LDL                       +  + +L + P  ++L  L+EL L   R+ L 
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 488 EAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELVS 541
             P                  + +I    F +L SL EL+LS NN+ +LP +L +
Sbjct: 194 R-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFT 247

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Query: 378 EAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDN 436
           EA  +   DLS++ I  L     S    L+ L L++N+I    D                
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTXXXXX 496
           N L  + S  F+++  L++LDLSYN      +  F  LP+L+EL L              
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL-------------- 378
Query: 497 XXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 530
                     N L+S+P+G F  LTSL ++ L  N
Sbjct: 379 --------DTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 58  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 154
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 62  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 119
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 120 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 174
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 175 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 232
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 233 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 263
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 264 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 310
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  + NK+ D
Sbjct: 311 TYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD 344

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 535
                               + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 130 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 41  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 99  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 153
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 535
                               + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 154 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 29/173 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 535
                               + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 130 ------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 19  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ L  N+ASL EN P   L  L+EL +  
Sbjct: 77  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 535
                               + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 134 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 73/175 (41%), Gaps = 29/175 (16%)
Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIX 423
           E +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D   
Sbjct: 16  EELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 73
Query: 424 XXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYL 482
                        NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +
Sbjct: 74  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV 132
Query: 483 RMQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 535
                                 + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 133 ----------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 120
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 121 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 175
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 176 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 233
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 234 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 264
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 265 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 311
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 345

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 50/175 (28%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
           S  P+     G +  L L R  +QEL P L    A+LQ L L                  
Sbjct: 94  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 136
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLR 487
                  +N L+ +P D F+D+  L  L L  N I+S+PE   F  L  L  L L     
Sbjct: 137 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 184
Query: 488 EAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELVS 541
                             QN +  + P  F++L  L  L L  NN+SALP E ++
Sbjct: 185 ------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 221

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 340

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 68/175 (38%), Gaps = 50/175 (28%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
           S  P+     G +  L L R  +QEL P L    A+LQ L L                  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 137
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLR 487
                  +N L+ +P D F+D+  L  L L  N I+S+PE   F  L  L  L L     
Sbjct: 138 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 185
Query: 488 EAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELVS 541
                             QN +  + P  F++L  L  L L  NN+SALP E ++
Sbjct: 186 ------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 19  LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +  
Sbjct: 77  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 535
                               + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 134 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 18  LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 75
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +  
Sbjct: 76  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 132
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 535
                               + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 133 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRM 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +  
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 131
Query: 485 QLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAL 535
                               + N +QS  +PE F NLT+L  LDLS N I ++
Sbjct: 132 --------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	542
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-49
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-46
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-50
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-43
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-41
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-40
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-40
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-40
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-36
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-30
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-32
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-31
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-28
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-31
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-29
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-27
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-25
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-17
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-20
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-17
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-20
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-16
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	7e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	6e-04

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  217 bits (556), Expect = 1e-63
 Identities = 99/565 (17%), Positives = 188/565 (33%), Gaps = 65/565 (11%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +    ++ L  VP+++  +                + + L+ N ++ L      N  
Sbjct: 12  PNITYQCMDQKLSKVPDDIPSS---------------TKNIDLSFNPLKILKSYSFSNFS 56

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQL 126
            L  L++S  ++  +   A   LH L +L ++ N I           T+L        +L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 127 KELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L S  +G+ + L     ++N I S  LP   ++ + +  +D+  N +  ++ N +   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAE--- 234
                    L  S N ++ + +      +L  L L  N   S  + + +     L     
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 235 ---FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDLSNNS 286
               +     L       +  L  +   +       ++  +     C   +S + L+  S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +  L   + K    + L +    L+   +  L        LK L   + +   S      
Sbjct: 297 IKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLPF------LKSLTLTMNKGSISFKKVAL 349

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK---LDLSRNSIQELPPELSSC 402
             L             L L    LS      +          LDLS N    +       
Sbjct: 350 PSL-----------SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 403 ASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             LQ L    + +K     +   SL  L  L +     +      F  +  L  L ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 462 -IASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 517
                  +  F++  +L  L L   QL +    +   L +L++L++S N+L  +    + 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 518 NLTSLTELDLSDNNISALPPELVSV 542
            L SL+ LD S N I      L   
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  196 bits (499), Expect = 1e-55
 Identities = 104/516 (20%), Positives = 177/516 (34%), Gaps = 68/516 (13%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI- 103
           L  LIL  N I+         L  L  L     KL+ L +  IG+L  LK L+V+ N I 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-----NLSDFKASNNCITSLPEDLA 157
             K+P    + T LV  D S N ++ +  +  + L            S N I  + +   
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 158 DCSKMSKLDVEGNKL-TVLSNNLIASWTMLTELIASKNLLNGM-------PETIGSLSRL 209
              K+ +L + GN   + +    + +   L                    P  +  L  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 210 --IRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
                 L      S          +++   +   ++  L  ++ K  K  +L +   QLK
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLK 320

Query: 267 EYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPA 324
           +       L  L  L L+ N  S    ++  + +L  L L+ N L      S  +  T +
Sbjct: 321 Q--FPTLDLPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L                                  + L L       + +      E+  
Sbjct: 378 L----------------------------------RHLDLSFNGAIIMSANFMGLEELQH 403

Query: 385 LDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           LD   ++++ +       S   L  L +S    K   D I   L+SL+ LK+  N  +  
Sbjct: 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463

Query: 443 -PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDILR-LQQ 498
             S+ F +   L  LDLS   +  +     F +L  LQ L +    L    +     L  
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 499 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 533
           L  LD S N +++          SL   +L++N+++
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (429), Expect = 7e-46
 Identities = 84/496 (16%), Positives = 161/496 (32%), Gaps = 51/496 (10%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L L+   ++      +                 L+ L+     +  L+   +  L  L 
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTS------------LENLVAVETKLASLESFPIGQLITLK 131

Query: 72  VLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSIMKIPDEI-----GSATALVKFDCSSN 124
            LNV+HN +    LPA    L  L  +D+S+N I  I          +    +  D S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            +  +     + + L +     N  +S  +   L + + +    +   +     N  I  
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 183 WTMLTELIASK---------NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            +++  L             N  +        L+ +  + L    I  +   +       
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQ 310

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP- 292
              +    L   P     L  L +L L  N+      +     LS LDLS N+LS     
Sbjct: 311 SLSIIRCQLKQFPT--LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 293 --EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 350
                   +LR L L+ N    + ++ +       L++L      +       T+     
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE---LQHLD--FQHSTLK--RVTEFSAFL 421

Query: 351 MATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCASLQT 407
              +L      L +   N       I+     +  L ++ NS ++       ++  +L  
Sbjct: 422 SLEKL----LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
           L LS+ +++     +  +L  L  L + +N L  + S  +  +  L  LD S+N     +
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 468 NPPFSSLPHLQELYLR 483
                    L    L 
Sbjct: 538 GILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  112 bits (281), Expect = 3e-26
 Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 13/194 (6%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
            V +         LS +P +I        +DLS N ++ L     S+ + LQ L LSR +
Sbjct: 10  VVPNITYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE 67

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           I+   D     L  LS L L  NP++      F  +  L+ L      +ASL   P    
Sbjct: 68  IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQ 126

Query: 474 LPHLQELYL---RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLT----EL 525
           L  L++L +    +   + P     L  L  +DLS N +Q+I     + L         L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 526 DLSDNNISALPPEL 539
           D+S N I  +  + 
Sbjct: 187 DMSLNPIDFIQDQA 200

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 8e-22
 Identities = 48/275 (17%), Positives = 87/275 (31%), Gaps = 47/275 (17%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +        +  LS +P +I   ++ + + L+ NPL+ L+S   +         L+  
Sbjct: 9   EVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSN-----FSELQ-- 59

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNS 391
                                        L L    +  I  +       ++ L L+ N 
Sbjct: 60  ----------------------------WLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKD 449
           IQ   P   S   SL+ L+    K+       +  L +L  L + +N +        F +
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151

Query: 450 IPMLQILDLSYN-IASLPEN---PPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDL 504
           +  L  +DLSYN I ++  N       +      L + +  +        +  +L  L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 505 SQNSLQS--IPEGFKNLTSLTELDLSDNNISALPP 537
             N   S  +    +NL  L    L          
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 419 PDAILTSLSSLSCLKLD--NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
           P ++   +  +  +     +  L +VP D        + +DLS+N +  L     FS+  
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSS---TKNIDLSFNPLKILKSYS-FSNFS 56

Query: 476 HLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 532
            LQ L L   ++          L  L  L L+ N +QS   G F  LTSL  L   +  +
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 533 SALPPEL 539
           ++L    
Sbjct: 117 ASLESFP 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  217 bits (555), Expect = 5e-63
 Identities = 118/524 (22%), Positives = 211/524 (40%), Gaps = 57/524 (10%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           V  +    +H  + ++ +DL     +TVLN++HN+L  L  A       L SLDV FN+I
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 104 MKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCS 160
            K+ P+       L   +   N+L +L   +   C NL++    +N I  +  +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE---TIGSLSRLIRLDLHQN 217
            +  LD+  N L+            L EL+ S N +  +      I + S L +L+L  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 218 RILSI-PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCVEA 272
           +I    P        L   ++ N  L     E        + +  L L ++QL       
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 273 ----CQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
                   L++LDLS N+L+ +  +    +  L    L  N ++ L S  ++G     ++
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVR 299

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLD 386
           YL                         L  +  + S+   +L  I          +  L+
Sbjct: 300 YLN------------------------LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 387 LSRNSIQELPPE-LSSCASLQTLILSRN--KIKDWPDAILTSL--SSLSCLKLDNNPLRQ 441
           +  N I  +     +   +L+ L LS +   ++   +    SL  S L  L L  N + +
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQ 498
           + SD F  +  L++LDL  N I        +  L ++ E+YL   +  +   +    +  
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 499 LRILDLSQNSLQSIPEG---FKNLTSLTELDLSDNNISALPPEL 539
           L+ L L + +L+++      F+ L +LT LDLS+NNI+ +  ++
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  207 bits (529), Expect = 2e-59
 Identities = 118/538 (21%), Positives = 209/538 (38%), Gaps = 54/538 (10%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM 104
           L+ L L HN + +L +        LT L++  N + ++      +   L +LD+S N + 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 105 KIPDE-IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA---SNNCITSL-PEDLADC 159
                       L +   S+N+++ L S        S  K    S+N I    P      
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 160 SKMSKLDVEGNKLTVLSNNLIA---SWTMLTELIASKNLLNGMPETIGS---LSRLIRLD 213
            ++  L +   +L       +    + T +  L  S + L+    T       + L  LD
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 214 LHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE 271
           L  N +  +   S +    L  F++  N +  L    L  L  +  L+L  +  K+    
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 272 -----------ACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL--RTLRSSL 317
                           L  L++ +N + G+   +   +  L+ L L+ +    RTL +  
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSE 375
                 + L  L   L +N+ S     + D  +    L    + L L    +       E
Sbjct: 375 FVSLAHSPLHILN--LTKNKIS---KIESDAFSWLGHL----EVLDLGLNEIGQELTGQE 425

Query: 376 IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSLSSLSCL 432
                 I ++ LS N   +L     +   SLQ L+L R  +K+   +      L +L+ L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN-------PPFSSLPHLQELYLR- 483
            L NN +  +  D  + +  L+ILDL +N +A L ++            L HL  L L  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 484 MQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 539
               E P ++ + L +L+I+DL  N+L ++P   F N  SL  L+L  N I+++  ++
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  171 bits (436), Expect = 2e-46
 Identities = 103/538 (19%), Positives = 191/538 (35%), Gaps = 60/538 (11%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPL--LTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS 102
           LQ+L+L++N I+ L  E+L       L  L +S N++ E  P     +  L  L ++   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 103 IMK-IPDEIGSA---TALVKFDCSSNQLKELPSSLGRCL---NLSDFKASNNCITSLPED 155
           +   + +++      T++     S++QL    ++    L   NL+    S N +  +  D
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 156 -LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM----------PETIG 204
             A   ++    +E N +  L ++ +     +  L   ++                 +  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 205 SLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLG-----TL 258
            L  L  L++  N I  I  +  +G  +L    + N+  S           L       L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 259 DLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR 314
           +L  N++ +   +A      L VLDL  N +       E   +  + ++ L+ N    L 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
            +         L+ L   L          +          L      L L   N++ I  
Sbjct: 447 RNSFALVP--SLQRLM--LRRVALKN-VDSSPSPFQPLRNL----TILDLSNNNIANIND 497

Query: 375 EIWEA-GEITKLDLSRNSIQELPPE---------LSSCASLQTLILSRNKIKDWPDAILT 424
           ++ E   ++  LDL  N++  L            L   + L  L L  N   + P  +  
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L  L  + L  N L  +P+  F +   L+ L+L  N I S+ +     +  +L EL +R
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 484 M-------QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 534
                   +      + +      I +LS + L + P  +     +   D S    SA
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLFDTSSCKDSA 674

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  113 bits (286), Expect = 8e-27
 Identities = 59/276 (21%), Positives = 100/276 (36%), Gaps = 47/276 (17%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C +   V D S+  L+ +P ++   T +  L LT N LR L ++            L   
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTR-----YSQLT-- 52

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                        L +    +S +  E+ +    +  L+L  N 
Sbjct: 53  ----------------------------SLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           + +L  +  + C +L  L L  N I+   +       +L  L L +N L          +
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 451 PMLQILDLSYN-IASLPENP-PFSSLPHLQELYLRM-QLRE-APTDILRLQQLRILDLSQ 506
             LQ L LS N I +L        +   L++L L   Q++E +P     + +L  L L+ 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 507 NSLQ-SIPEGFK---NLTSLTELDLSDNNISALPPE 538
             L  S+ E        TS+  L LS++ +S     
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (272), Expect = 5e-25
 Identities = 50/189 (26%), Positives = 74/189 (39%), Gaps = 28/189 (14%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
           +V+ +      + L+ +P ++     IT L+L+ N ++ LP    +  + L +L +  N 
Sbjct: 3   TVSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           I      +   L  L  L L +N L Q+    F     L  L L  N I  +  NP F  
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FVK 119

Query: 474 LPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 532
             +L  L                      DLS N L S   G    L +L EL LS+N I
Sbjct: 120 QKNLITL----------------------DLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 533 SALPPELVS 541
            AL  E + 
Sbjct: 158 QALKSEELD 166

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (552), Expect = 6e-63
 Identities = 87/543 (16%), Positives = 180/543 (33%), Gaps = 65/543 (11%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSF 100
           +  L L       ++ + +  L  L VL +  +          P  I      +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 101 NSIMK-IPDEIGSATAL---VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL 156
               K   D                S  Q K +  S    L  +     +N IT + + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+ +  +  +     +                            +L  L  ++++ 
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVYN 258

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALSALP---------AELGKLSKLGTLDLHSNQLK 266
              L  +P+ +     +    +  N   +           A+     K+  + +  N LK
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 267 EYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
            + VE    +++ L +L+   N L G  P  G    L  L L  N +  + ++       
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE- 377

Query: 324 ALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELS-LEGMNLSAIPSEI 376
             ++ L         +P   D++        +++ + +  +  E+  ++G N   +    
Sbjct: 378 -QVENLSFAHNKLKYIPNIFDAK-------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTS-------LSS 428
           ++   ++ ++LS N I + P E  S+ + L ++ L  N + + P   L            
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 429 LSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQL 486
           L+ + L  N L ++  D     +P L  +DLSYN  +  P      +   L+   +R Q 
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQR 547

Query: 487 REA--------PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
                      P  I     L  L +  N ++ + E      +++ LD+ DN   ++   
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLS 605

Query: 539 LVS 541
            V 
Sbjct: 606 YVC 608

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  192 bits (490), Expect = 3e-54
 Identities = 81/519 (15%), Positives = 165/519 (31%), Gaps = 79/519 (15%)

Query: 46  DLQKLILAHNNIEK-LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM 104
           DL K  +  +  +K +K+  R     T +    N ++ +  A+  L  L+   +  +   
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS--- 216

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLADCSKMS 163
               E        +    + Q K          +L+D +  +   +T LP  L    +M 
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI--LS 221
            ++V  N+       L   W  L +                   ++  + +  N +    
Sbjct: 277 LINVACNRGISGEQ-LKDDWQALADA--------------PVGEKIQIIYIGYNNLKTFP 321

Query: 222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSV 279
           + +S+     L       N L       G   KL +L+L  NQ+ E     C    ++  
Sbjct: 322 VETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 280 LDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
           L  ++N L  +P   +   ++ +  +  + N + ++     +   P   K          
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK---------- 431

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE-ITKLDLSRNSIQELP 396
                            +      ++L    +S  P E++  G  ++ ++L  N + E+P
Sbjct: 432 --------------GINV----SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 397 P--------ELSSCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKLDNNPLRQVPSDGF 447
                       +   L ++ L  NK+    D    T+L  L  + L  N   + P+   
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT-QP 532

Query: 448 KDIPMLQILDLSYNIA--------SLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQ 498
            +   L+   +               PE    +  P L +L +    +R+    I     
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEG--ITLCPSLTQLQIGSNDIRKVNEKIT--PN 588

Query: 499 LRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALP 536
           + +LD+  N   SI               L  +    + 
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  182 bits (465), Expect = 1e-50
 Identities = 71/500 (14%), Positives = 159/500 (31%), Gaps = 93/500 (18%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L +   +T L++     S  +P AIG+L  L+ L +  +                     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE------------------K 118

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED---LADCSKMSKLDVEGNKLTVLSNNL 179
            N+    P  +   ++    +           D     D S + K  +  +         
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
                  T++    N +  + + +  L++L +  +  +  ++     +     +E+    
Sbjct: 179 SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY---A 235

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
                   +   L  L  +++                      +  +L+ LP  +  +  
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEV---------------------YNCPNLTKLPTFLKALPE 274

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           ++ + +  N   +      +    A                                   
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEK---------------------------I 307

Query: 360 KELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           + + +   NL    + + + +  ++  L+   N ++   P   S   L +L L+ N+I +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPEN------P 469
            P         +  L   +N L+ +P+    K + ++  +D SYN I S+         P
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 470 PFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG--------FKNL 519
                 ++  + L   Q+ + P ++      L  ++L  N L  IP+         FKN 
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 520 TSLTELDLSDNNISALPPEL 539
             LT +DL  N ++ L  + 
Sbjct: 488 YLLTSIDLRFNKLTKLSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  124 bits (313), Expect = 2e-30
 Identities = 43/298 (14%), Positives = 95/298 (31%), Gaps = 37/298 (12%)

Query: 276 RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R++ L L     SG +P  IG++T L  L L  +  +           P  +    S   
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG----PKGISANMSDEQ 137

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
           + +                  S   K+         +I        + T++    N+I  
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-------------------- 434
           +   +     L+   +  +              +    +                     
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP-------PFSSLPHLQELYLRM-Q 485
           +   L ++P+   K +P +Q+++++ N   S  +                +Q +Y+    
Sbjct: 258 NCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 486 LRE--APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 541
           L+     T + ++++L +L+   N L+     F +   L  L+L+ N I+ +P     
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  213 bits (544), Expect = 5e-62
 Identities = 104/559 (18%), Positives = 194/559 (34%), Gaps = 52/559 (9%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNL 67
             + + N  N  L ++P  +  +                + L  + N +  +       L
Sbjct: 12  EVNKTYNCENLGLNEIPGTLPNS---------------TECLEFSFNVLPTIQNTTFSRL 56

Query: 68  PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             LT L+++  ++  +        H L +L ++ N ++ + +       AL         
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 126 LKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
           +  +    L     L      +N I+S+         K+  LD + N +  LS   ++S 
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 184 TMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC--SLAEFYMG 238
              T   L  + N + G+       +    L+    + L  I   +      SL      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 239 NNALSALPAEL---GKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPE 293
           +     +   +        + +++L  +           C   L  LDL+   LS LP  
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +  ++TL+KL+L+ N    L     +      L +L  +         +   E+L  +  
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENL-- 352

Query: 354 RLSVTSKELSLEGMNLSAIPS---EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLI 409
                 +EL L   ++        ++     +  L+LS N    L  E    C  L+ L 
Sbjct: 353 ------RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 410 LSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
           L+  ++K     +   +L  L  L L ++ L       F  +P LQ L+L  N       
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 468 NPP--FSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSL 522
                  +L  L+ L L    L          L+ +  +DLS N L S       +L  +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 523 TELDLSDNNISALPPELVS 541
             L+L+ N+IS + P L+ 
Sbjct: 527 Y-LNLASNHISIILPSLLP 544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (526), Expect = 2e-59
 Identities = 90/546 (16%), Positives = 189/546 (34%), Gaps = 71/546 (13%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L+L+   +  +  + +++               L  L+L  N +  + E  L     L 
Sbjct: 61  FLDLTRCQIYWIHEDTFQSQ------------HRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL 129
            L      +S +    +     L+SL +  N I  I   +      L   D  +N +  L
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 130 PSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASWT 184
                   +         + N I  +     D +    L+  G +    +      ++  
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228

Query: 185 MLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNN 240
            L            +   +        +  ++L ++   +I S+   C   L E  +   
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPE--IGK 296
            LS LP+ L  LS L  L L +N+ +  C  +      L+ L +  N+         +  
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS 356
           +  LR+L L+ + + T             L+ L                         L 
Sbjct: 349 LENLRELDLSHDDIETS------DCCNLQLRNLSH-----------------------L- 378

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCASLQTLILSRN 413
              + L+L      ++ +E ++   ++  LDL+   ++    +    +   L+ L LS +
Sbjct: 379 ---QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQV---PSDGFKDIPMLQILDLSYN-IASLPENP 469
            +    + +   L +L  L L  N   +     ++  + +  L+IL LS+  ++S+ ++ 
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 470 PFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDL 527
            F+SL  +  + L   +L  +  + L   +   L+L+ N +  I       L+    ++L
Sbjct: 496 -FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINL 554

Query: 528 SDNNIS 533
             N + 
Sbjct: 555 RQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  192 bits (490), Expect = 3e-54
 Identities = 93/470 (19%), Positives = 178/470 (37%), Gaps = 34/470 (7%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL 152
           K+ +     + +IP  + ++      + S N L  +  ++  R +NL+    +   I  +
Sbjct: 15  KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 153 PED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLI 210
            ED      ++  L +  N L  ++   ++    L  L   +  ++ +    + +   L 
Sbjct: 73  HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132

Query: 211 RLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQL 265
            L L  N I SI          L      NNA+  L  E    L + + L +L+L+ N +
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDI 191

Query: 266 KEYCVEACQ-LRLSVLDLSNNSLSGLPPE---IGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
                 A        L+        +  +      + +L            +  ++  G 
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE 381
               ++ +   L ++          +     + L    +EL L   +LS +PS +     
Sbjct: 252 CEMSVESIN--LQKHYFF---NISSNTFHCFSGL----QELDLTATHLSELPSGLVGLST 302

Query: 382 ITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPL 439
           + KL LS N  + L     S+  SL  L +  N  +       L +L +L  L L ++ +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 440 RQVP--SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL---RMQLREAPTDI 493
                 +   +++  LQ L+LSYN   SL     F   P L+ L L   R+++++A +  
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 494 LRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELVSV 542
             L  L++L+LS + L    E  F  L +L  L+L  N+      +  + 
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  157 bits (400), Expect = 6e-42
 Identities = 90/492 (18%), Positives = 179/492 (36%), Gaps = 46/492 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           SL L +  +  +                      L+ L   +N I  L KED+ +L   T
Sbjct: 133 SLYLGSNHISSIKLPKGFPT------------EKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 72  V--LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA---TALVKFDCSSNQL 126
              LN++ N ++ +     +  + +SL+      + +  +        +L          
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 127 KELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +++  ++      +++       +   ++  +     S + +LD+    L+ L + L   
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VG 299

Query: 183 WTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMGN 239
            + L +L+ S N    + + +  +   L  L +  N          +    +L E  + +
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 240 NALSALPA---ELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPE- 293
           + +        +L  LS L +L+L  N+      EA +   +L +LDL+   L     + 
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 294 -IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
               +  L+ L L+ + L      L +G     L++L   L  N   + +  K + +   
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLP--ALQHLN--LQGNHFPKGNIQKTNSLQTL 475

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
            RL    + L L   +LS+I    +     +  +DLS N +     E  S      L L+
Sbjct: 476 GRL----EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
            N I     ++L  LS    + L  NPL    S    +I  L+    +       E+   
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCS----NIYFLEWYKENMQKLEDTEDTLC 587

Query: 472 SSLPHLQELYLR 483
            + P L+ + L 
Sbjct: 588 ENPPLLRGVRLS 599

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (263), Expect = 5e-24
 Identities = 41/276 (14%), Positives = 82/276 (29%), Gaps = 47/276 (17%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
            +      +  N  L+ +P  +    +   L  + N L T++++  +      L  L   
Sbjct: 10  EKEVNKTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSR-----LINLT-- 60

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                        L L    +  I  + +++   +  L L+ N 
Sbjct: 61  ----------------------------FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           +  +    LS   +L+ L   +  I       L +  +L  L L +N +  +        
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 451 PMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM---QLREAPTDILRLQQLRILDLSQ 506
             L++LD   N I  L +    SSL     L L +    +             + L+   
Sbjct: 153 EKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 507 NSLQSIPE---GFKNLTSLTELDLSDNNISALPPEL 539
                +         + SL      D +   + P +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  214 bits (547), Expect = 7e-61
 Identities = 95/558 (17%), Positives = 187/558 (33%), Gaps = 105/558 (18%)

Query: 47  LQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  L LA    +    + +  L  L VL+   +  +      G+  +   +       ++
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 106 I---PDEIGSATALVKFDCSSNQLKELP------SSLGRCLNLSDFKASNNCITSLPEDL 156
           +      +     L   D   + +   P            L  +      N IT + + +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 157 ADCSKMSKLDVEGNKLTVLSNNL-------------------IASWTMLTEL-IASKNLL 196
              +K+  +    +  T  +  +                    ++   LT++ + +   +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 197 NGMPETIGSLSRLIRLDLHQNRILS----------IPSSISGCCSLAEFYMGNNALSALP 246
             +P+ +  L  L  L++  NR +S          +         +  FYMG N L   P
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 247 AE--LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT-LRKL 303
           A   L K+ KLG LD   N+++        ++L+ L L  N +  +P +    T  +  L
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624

Query: 304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 363
             + N L+ + +         +                                    + 
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVM----------------------------------GSVD 650

Query: 364 LEGMNLSAIPSEIWEAGEI------TKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
                + +    I  + +       + + LS N IQ+ P E  ++ + + T+ILS N + 
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 417 DWPDAILT-------SLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPE 467
             P+  L        +   L+ + L  N L  +  D     +P L  +D+SYN  +S P 
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT 770

Query: 468 NPPFSSLPHLQELYLR--------MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNL 519
                +   L+   +R          LR+ PT I     L  L +  N ++ + E     
Sbjct: 771 Q--PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--T 826

Query: 520 TSLTELDLSDNNISALPP 537
             L  LD++DN   ++  
Sbjct: 827 PQLYILDIADNPNISIDV 844

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  197 bits (502), Expect = 9e-55
 Identities = 80/516 (15%), Positives = 166/516 (32%), Gaps = 80/516 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           LQ  I  +  ++ +K+D R     T +    N+++ +  AI  L  L+ +  + +     
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKL 165
              +            + Q +    S     +L+D +  +   +T LP+ L D  ++  L
Sbjct: 464 NIAVDW---EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           ++  N+                     K     + +   +  ++    +  N +   P+S
Sbjct: 521 NIACNRGI--------------SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566

Query: 226 --ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLD 281
             +     L      +N +  L    G   KL  L L  NQ++E   + C    ++  L 
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625

Query: 282 LSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339
            S+N L  +P       +  +  +  + N + +   ++             +        
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST-------- 677

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPE 398
                                 ++L    +   P+E+      I+ + LS N +  +P  
Sbjct: 678 ----------------------VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 399 --------LSSCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKLDNNPLRQVPSDGFKD 449
                     +   L T+ L  NK+    D    T+L  LS + +  N     P+    +
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT-QPLN 774

Query: 450 IPMLQILDLSYNIA--------SLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLR 500
              L+   + +             P     ++ P L +L +    +R+    +    QL 
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTG--ITTCPSLIQLQIGSNDIRKVDEKLT--PQLY 830

Query: 501 ILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 535
           ILD++ N   SI               L  +    +
Sbjct: 831 ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  183 bits (466), Expect = 6e-50
 Identities = 71/458 (15%), Positives = 145/458 (31%), Gaps = 81/458 (17%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSH-NKLSELPAAIGELHMLKSLDVSFNSI-- 103
                      E  +    NL  LT + + +   +++LP  + +L  L+SL+++ N    
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 104 --------MKIPDEIGSATALVKFDCSSNQLKELPSS--LGRCLNLSDFKASNNCITSLP 153
                    ++ D+  +   +  F    N L+E P+S  L + + L      +N +  L 
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589

Query: 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLIR 211
                  K++ L ++ N++  +  +  A    +  L  S N L  +P      S+  +  
Sbjct: 590 A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 212 LDLHQNRILSIPSSISG------CCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQ 264
           +D   N+I S   +IS         + +   +  N +   P E     S + T+ L +N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           +                +  NSL            L  + L  N L +L         P 
Sbjct: 709 MTS--------------IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L                                    + +     S+ P++   + ++  
Sbjct: 755 L----------------------------------SNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 385 LDLSRNSI-------QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
             +            ++ P  +++C SL  L +  N I+   + +   L  L    + +N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILD---IADN 837

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           P   +            +  L Y+            + 
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  181 bits (460), Expect = 4e-49
 Identities = 67/493 (13%), Positives = 151/493 (30%), Gaps = 108/493 (21%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L N   +T L+++       +P AIG+L  LK L    +S        G           
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 123 SNQLKEL---PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
                 +      L     L+      + I   PE +    K S++ ++  ++  L+N +
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKPIKKDSRISLKDTQIGNLTNRI 437

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
                              + + I  L++L  +    +       ++    + +++    
Sbjct: 438 -----------------TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY---A 477

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
                       L  L  ++L++                       +++ LP  +  +  
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNC---------------------PNMTQLPDFLYDLPE 516

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L+ L +  N   +                                               
Sbjct: 517 LQSLNIACNRGISA---------------------------------------------- 530

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKD 417
              +    + + +  +     +I    +  N+++E P    L     L  L    NK++ 
Sbjct: 531 ---AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPH 476
                  +   L+ LKLD N + ++P D       ++ L  S+N +  +P      S+  
Sbjct: 588 LEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 477 LQELYLRM-QLREAPTDI------LRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 528
           +  +     ++     +I       +      + LS N +Q  P   F   + ++ + LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 529 DNNISALPPELVS 541
           +N ++++P   + 
Sbjct: 706 NNLMTSIPENSLK 718

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 25/197 (12%), Positives = 54/197 (27%), Gaps = 37/197 (18%)

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            IWEA     LD             +  +         +   D P   L +   ++ L L
Sbjct: 276 AIWEA-----LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSL 330

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL---RMQLREAPT 491
                +    D    +  L++L    +  ++                    R+++     
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390

Query: 492 DILRLQQLRILDLSQNSLQSIPE-----------------------------GFKNLTSL 522
            +   Q+L + DL Q+++   PE                               + LT L
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450

Query: 523 TELDLSDNNISALPPEL 539
             +  +++  +     +
Sbjct: 451 QIIYFANSPFTYDNIAV 467

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  203 bits (518), Expect = 3e-58
 Identities = 100/558 (17%), Positives = 188/558 (33%), Gaps = 58/558 (10%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +      +   +P+ +  +                + L L+ N +  L      + P
Sbjct: 8   PNITYQCMELNFYKIPDNLPFS---------------TKNLDLSFNPLRHLGSYSFFSFP 52

Query: 69  LLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQL 126
            L VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 127 KEL-PSSLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L    +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +   
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM 237
             +      L  S N +N +        RL +L L  N      + + I G   L    +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 238 GNNALSALPA----ELGKLSKLGTLDLHSNQLKEYCVEACQL--------RLSVLDLSNN 285
                         +   L  L  L +   +L         +         +S   L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           ++  +          + L L               PT  L    R     N+   A +  
Sbjct: 293 TIERVKD-FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           +  +     L ++   LS +G          +    +  LDLS N +  +         L
Sbjct: 345 D--LPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 406 QTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IA 463
           + L    + +K     ++  SL +L  L + +   R   +  F  +  L++L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 464 SLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLT 520
                  F+ L +L  L L   QL +        L  L++L++S N+  S+    +K L 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 521 SLTELDLSDNNISALPPE 538
           SL  LD S N+I     +
Sbjct: 519 SLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  170 bits (433), Expect = 2e-46
 Identities = 107/486 (22%), Positives = 173/486 (35%), Gaps = 46/486 (9%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL 152
            +      +  KIPD +  +      D S N L+ L   S      L     S   I ++
Sbjct: 10  ITYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 153 -PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLI 210
                   S +S L + GN +  L+    +  + L +L+A +  L  +    IG L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 211 RLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLG----TLDLHSN 263
            L++  N I    +P   S   +L    + +N + ++   +L  L ++     +LDL  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 264 QLKEYCVEACQ-LRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
            +      A + +RL  L L NN  S   +   I  +  L    L     R   +  +  
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN--LEK 245

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG 380
              + L+ L +   E           D I             SL  + +  +    +  G
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 381 EITKLDLSRNSIQELPPE--------------------LSSCASLQTLILSRNKI--KDW 418
               L+L      + P                           SL+ L LSRN +  K  
Sbjct: 306 -WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
                   +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F SL +L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 478 QELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNIS 533
             L +     R A   I   L  L +L ++ NS Q   +P+ F  L +LT LDLS   + 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 534 ALPPEL 539
            L P  
Sbjct: 484 QLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (402), Expect = 4e-42
 Identities = 105/538 (19%), Positives = 184/538 (34%), Gaps = 71/538 (13%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI- 103
           L  LIL  N I+ L       L  L  L      L+ L    IG L  LK L+V+ N I 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKA----SNNCITSLPEDLA 157
             K+P+   + T L   D SSN+++ +  + L     +         S N +  +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 158 DCSKMSKLDVEGNKLTV-----------------LSNNLIASWTMLTELIASK------- 193
              ++ KL +  N  ++                 L      +   L +   S        
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 194 -----------NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
                        L+ + +    L+ +    L    I  +    S         + N   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKF 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTT 299
              P     L  L  L   SN+      E     L  LDLS N LS            T+
Sbjct: 317 GQFPTLK--LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L+ L L+ N + T+ S+ +       L++L      +       ++  +      L    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQ---LEHLD--FQHSNLK--QMSEFSVFLSLRNL---- 423

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIK 416
             L +   +     + I+     +  L ++ NS QE  LP   +   +L  L LS+ +++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                   SLSSL  L + +N    + +  +K +  LQ+LD S N I +  +        
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 476 HLQELYLRM-QLR---EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLS 528
            L  L L         E  + +  ++  R L +    ++ + P   + +  +  L+++
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 47/271 (17%), Positives = 80/271 (29%), Gaps = 47/271 (17%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNS 391
                                        L L    +  I          ++ L L+ N 
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGFKD 449
           IQ L     S  +SLQ L+     +    +  +  L +L  L + +N ++     + F +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQ----ELYLRM-QLREAPTDILRLQQLRILDL 504
           +  L+ LDLS N            L  +      L L +  +        +  +L  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 505 SQN--SLQSIPEGFKNLTSLTELDLSDNNIS 533
             N  SL  +    + L  L    L      
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 8e-18
 Identities = 68/317 (21%), Positives = 112/317 (35%), Gaps = 61/317 (19%)

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPE- 293
                 +P  L        LDL  N L+   + +        L VLDLS   +  +    
Sbjct: 16  ELNFYKIPDNL--PFSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
              ++ L  L+LTGNP+++L     +G     L  L                        
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSG-----LSSL------------------------ 102

Query: 354 RLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQ--ELPPELSSCASLQTLIL 410
                 ++L     NL++     I     + +L+++ N IQ  +LP   S+  +L+ L L
Sbjct: 103 ------QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 411 SRNKIKDWPDAILTSLSSLSC----LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466
           S NKI+      L  L  +      L L  NP+  +    FK+I  L  L L  N  SL 
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

Query: 467 ENP-PFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTEL 525
                   L  L+   L +       ++ +  +  +  L   +++           L  L
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF--------RLAYL 267

Query: 526 DLSDNNISALPPELVSV 542
           D   ++I  L   L +V
Sbjct: 268 DYYLDDIIDLFNCLTNV 284

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 482
           +  + +++   ++ N   ++P +        + LDLS+N      +  F S P LQ L L
Sbjct: 4   VEVVPNITYQCMELN-FYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 483 RM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538
              +++       + L  L  L L+ N +QS+  G F  L+SL +L   + N+++L   
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  197 bits (503), Expect = 3e-55
 Identities = 127/540 (23%), Positives = 199/540 (36%), Gaps = 84/540 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM- 104
           L+ L ++ NN       L +   L  L++S NKLS +   AI     LK L++S N  + 
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 105 KIPDEIGSATALVKFDCSSNQLK-ELPSSL-GRCLNLSDFKASNNCIT-SLPEDLADCSK 161
            IP       +L     + N+   E+P  L G C  L+    S N    ++P     CS 
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 162 MSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGM-PETIGSLS-RLIRLDLHQNR 218
           +  L +  N  +  L  + +     L  L  S N  +G  PE++ +LS  L+ LDL  N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 219 IL-SIPSSISGCC--SLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCVE 271
               I  ++      +L E Y+ NN  +  +P  L   S+L +L L  N L       + 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 272 ACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +   +L  L L  N L G +P E+  + TL  L+L  N L         G  P+ L    
Sbjct: 440 SLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--------TGEIPSGLSNCT 490

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389
           +                       L+     +SL    L+  IP  I     +  L LS 
Sbjct: 491 N-----------------------LNW----ISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKI--------------------KDWPDAILTSLSS 428
           NS    +P EL  C SL  L L+ N                             + +   
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 429 LSCLKLDNNPLR---QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM- 484
                   N L           + +      +++  +     +P F +   +  L +   
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 485 QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELVS 541
            L    P +I  +  L IL+L  N +  SIP+   +L  L  LDLS N +   +P  + +
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  194 bits (496), Expect = 3e-54
 Identities = 122/506 (24%), Positives = 199/506 (39%), Gaps = 78/506 (15%)

Query: 47  LQKLILAHNNIE-KLKEDLR-NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           LQ L LA N    ++ + L      LT L++S N     +P   G   +L+SL +S N+ 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 104 M-KIPDE-IGSATALVKFDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD 158
             ++P + +     L   D S N+   ELP SL     +L     S+N  +  +  +L  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 159 CSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLH 215
             K +  +L ++ N  T      +++ + L  L  S N L+G  P ++GSLS+L  L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCV 270
            N +   IP  +    +L    +  N L+  +P+ L   + L  + L +N+L       +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 271 EACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
              +  L++L LSNNS SG +P E+G   +L  L L  N          NG  PA +   
Sbjct: 511 GRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF--------NGTIPAAMFKQ 561

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389
             ++  N  +           M          L  +G+       ++         +++ 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI----RSEQLNRLSTRNPCNITS 617

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
                   P   +  S+  L +S N +      I   + S+                   
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSG---YIPKEIGSMP------------------ 656

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS 508
               L IL+L +N               +            P ++  L+ L ILDLS N 
Sbjct: 657 ---YLFILNLGHN--------------DIS--------GSIPDEVGDLRGLNILDLSSNK 691

Query: 509 LQ-SIPEGFKNLTSLTELDLSDNNIS 533
           L   IP+    LT LTE+DLS+NN+S
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (458), Expect = 4e-49
 Identities = 142/563 (25%), Positives = 219/563 (38%), Gaps = 94/563 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           S++LS++ L    + V  +               L+ L L++++I       +    LT 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSL---------LSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 73  LNVSHNKLS-ELPAA--IGELHMLKSLDVSFNSI-MKIPDEIGSA-TALVKFDCSSNQL- 126
           L++S N LS  +     +G    LK L+VS N++        G    +L   D S+N + 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 127 KELPSSL---GRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
                       C  L     S N I+  +   ++ C  +  LDV  N  +      +  
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST-GIPFLGD 221

Query: 183 WTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240
            + L  L  S N L+G     I + + L  L++  N+ +  IP       SL    +  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

Query: 241 ALS-ALPAEL-GKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNSLSG-LPP 292
             +  +P  L G    L  LDL  N         +   +C   L  L LS+N+ SG LP 
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCS-LLESLALSSNNFSGELPM 336

Query: 293 E-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
           + + KM  L+ L L+ N          +G  P  L  L + L                  
Sbjct: 337 DTLLKMRGLKVLDLSFNEF--------SGELPESLTNLSASL------------------ 370

Query: 352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAG--EITKLDLSRNSIQ-ELPPELSSCASLQT 407
                     L L   N S  I   + +     + +L L  N    ++PP LS+C+ L +
Sbjct: 371 --------LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 408 LILSRNK----IKDWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN- 461
           L LS N     I       L SLS L  LKL  N L  ++P +    +  L+ L L +N 
Sbjct: 423 LHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFND 477

Query: 462 -IASLPENPPFSSLPHLQELYLRM-QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFK 517
               +P     S+  +L  + L   +L  E P  I RL+ L IL LS NS   +IP    
Sbjct: 478 LTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 518 NLTSLTELDLSDNNIS-ALPPEL 539
           +  SL  LDL+ N  +  +P  +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  173 bits (441), Expect = 1e-46
 Identities = 119/499 (23%), Positives = 198/499 (39%), Gaps = 69/499 (13%)

Query: 70  LTVLNVSHNKLS----ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
           +T +++S   L+     + +++  L  L+SL +S + I         + +L   D S N 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 126 LK-ELPS--SLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLT---VLSN 177
           L   + +  SLG C  L     S+N +            + +  LD+  N ++   V+  
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 178 NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
            L      L  L  S N ++G  + +     L  LD+  N   +    +  C +L    +
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDI 230

Query: 238 GNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG-LPPEI 294
             N LS      +   ++L  L++ SNQ     +    L+ L  L L+ N  +G +P  +
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPDFL 289

Query: 295 -GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
            G   TL  L L+GN           G  P                              
Sbjct: 290 SGACDTLTGLDLSGNHF--------YGAVPPFFGSCSL---------------------- 319

Query: 354 RLSVTSKELSLEGMNLS-AIPSE-IWEAGEITKLDLSRNSIQ-ELPPELSSC-ASLQTLI 409
            L    + L+L   N S  +P + + +   +  LDLS N    ELP  L++  ASL TL 
Sbjct: 320 -L----ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374

Query: 410 LSRNKIK-DWPDAIL-TSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN--IAS 464
           LS N         +     ++L  L L NN    ++P     +   L  L LS+N    +
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGT 433

Query: 465 LPENPPFSSLPHLQELYLRM-QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTS 521
           +P +    SL  L++L L +  L  E P +++ ++ L  L L  N L   IP G  N T+
Sbjct: 434 IPSS--LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 522 LTELDLSDNNIS-ALPPEL 539
           L  + LS+N ++  +P  +
Sbjct: 492 LNWISLSNNRLTGEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  166 bits (423), Expect = 3e-44
 Identities = 111/476 (23%), Positives = 172/476 (36%), Gaps = 88/476 (18%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPA-AIGELHMLKSLDVSFNSI 103
           L  L L+ N+    +     +  LL  L +S N  S ELP   + ++  LK LD+SFN  
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 104 M-KIPDEIGSATA-LVKFDCSSNQLK-ELPSSLGRCL--NLSDFKASNNCIT-SLPEDLA 157
             ++P+ + + +A L+  D SSN     +  +L +     L +    NN  T  +P  L+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 158 DCSKMSKLDVEGNKLT----------------VLSNNL--------IASWTMLTELIASK 193
           +CS++  L +  N L+                 L  N+        +     L  LI   
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 194 NLLNGM-PETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELG 250
           N L G  P  + + + L  + L  NR+   IP  I    +LA   + NN+ S  +PAELG
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 251 KLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLL 304
               L  LDL++N                       ++ N ++G     I      ++  
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMF-------KQSGKIAANFIAGKRYVYIKNDGMKKECH 588

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
             GN L         G     L  L +                               ++
Sbjct: 589 GAGNLLEF------QGIRSEQLNRLST---------------------------RNPCNI 615

Query: 365 EGMNLS-AIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDW-PDA 421
                           G +  LD+S N +   +P E+ S   L  L L  N I    PD 
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS--LPENPPFSSLP 475
           +   L  L+ L L +N L          + ML  +DLS N  S  +PE   F + P
Sbjct: 676 V-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP 730

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  132 bits (335), Expect = 6e-33
 Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 14/274 (5%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+ LIL  N++  ++   L N   L  +++S+N+L+ E+P  IG L  L  L +S NS  
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

Query: 105 -KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             IP E+G   +L+  D ++N     +P+++ +        A+N         + +    
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI---AANFIAGKRYVYIKNDGMK 584

Query: 163 SKLDVEGN--KLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRI 219
            +    GN  +   + +  +   +       +  +  G    T  +   ++ LD+  N +
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 220 L-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR 276
              IP  I     L    +G+N +S ++P E+G L  L  LDL SN+L          L 
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 277 -LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
            L+ +DLSNN+LSG  PE+G+  T        NP
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 8e-06
 Identities = 22/66 (33%), Positives = 29/66 (43%)

Query: 476 HLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 535
            L    L +      + +L L  L  L LS + +     GFK   SLT LDLS N++S  
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP 115

Query: 536 PPELVS 541
              L S
Sbjct: 116 VTTLTS 121

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  188 bits (480), Expect = 3e-53
 Identities = 103/553 (18%), Positives = 189/553 (34%), Gaps = 64/553 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           +      +   +P+ +                   + L L+ N +  L      + P L 
Sbjct: 11  TYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L  L
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 130 PS-SLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            +  +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +     +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 187 T----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSL------AE 234
                 L  S N +N +        RL +L L  N      + + I G   L        
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-----RLSVLDLSNNSLS 288
            +     L       L  L  L   +     L  Y  +   L      +S   L + ++ 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 289 GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348
            +          + L L         +  +       LK L      N+   A +  +  
Sbjct: 296 RVKDFSY-NFGWQHLELVNCKFGQFPTLKLKS-----LKRLT--FTSNKGGNAFSEVD-- 345

Query: 349 ITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
                 L    + L L    LS         +    +  LDLS N +  +         L
Sbjct: 346 ---LPSL----EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 406 QTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IA 463
           + L    + +K     ++  SL +L  L + +   R   +  F  +  L++L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 464 SLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLT 520
                  F+ L +L  L L + QL +        L  L++L+++ N L+S+P+G F  LT
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 521 SLTELDLSDNNIS 533
           SL ++ L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  182 bits (463), Expect = 8e-51
 Identities = 109/483 (22%), Positives = 174/483 (36%), Gaps = 42/483 (8%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL 152
            +      +  KIPD +    +    D S N L+ L S S      L     S   I ++
Sbjct: 10  ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 153 PED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLI 210
            +      S +S L + GN +  L+    +  + L +L+A +  L  +    IG L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 211 RLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKL----GTLDLHSN 263
            L++  N I    +P   S   +L    + +N + ++    L  L ++     +LDL  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 264 QLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE--IGKMTTLRKLLLTG------NPLRTLR 314
            +      A + +RL  L L NN  S    +  I  +  L    L          L    
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL------------ITMATRLSVTSKEL 362
            S + G     ++  R    +    +       L            I      S      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI--KDWPD 420
            LE +N         +   + +L  + N       E+    SL+ L LSRN +  K    
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
                 +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F SL +L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 480 LYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSI--PEGFKNLTSLTELDLSDNNISAL 535
           L +     R A   I   L  L +L ++ NS Q    P+ F  L +LT LDLS   +  L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 536 PPE 538
            P 
Sbjct: 486 SPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  178 bits (453), Expect = 2e-49
 Identities = 93/442 (21%), Positives = 165/442 (37%), Gaps = 30/442 (6%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
           + + C      ++P +L    +  +   S N +  L         ++  LD+   ++  +
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +  I    +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSV--LDLSNN 285
           E  + +N + +   P     L+ L  LDL SN+++           Q+ L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRLPENEDSEAST 343
            ++ + P   K   L KL L  N       +++      L  L+  R  L E  +     
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 344 TK-EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
              +  +     L++    L+     L  I         ++   L   +I+ +    S  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN 303

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
              Q L L   K   +P   L SL  L+     +N      S    D+P L+ LDLS N 
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFS--EVDLPSLEFLDLSRNG 358

Query: 463 ASLPENPP--FSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--FK 517
            S              L+ L L    +    ++ L L+QL  LD   ++L+ + E   F 
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 518 NLTSLTELDLSDNNISALPPEL 539
           +L +L  LD+S  +       +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGI 440

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (276), Expect = 9e-26
 Identities = 58/192 (30%), Positives = 80/192 (41%), Gaps = 13/192 (6%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKI 415
           V +       +N   IP  +        LDLS N ++ L      S   LQ L LSR +I
Sbjct: 7   VPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
           +   D    SLS LS L L  NP++ +    F  +  LQ L      +ASL    P   L
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHL 123

Query: 475 PHLQELYLRM-QLREA--PTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLT----ELD 526
             L+EL +    ++    P     L  L  LDLS N +QSI     + L  +      LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 527 LSDNNISALPPE 538
           LS N ++ + P 
Sbjct: 184 LSLNPMNFIQPG 195

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.4 bits (235), Expect = 1e-20
 Identities = 54/261 (20%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           ++    L    IE++ +D         L + + K  + P    +L  LK L  + N    
Sbjct: 283 NVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339

Query: 106 IPDEIGSATALVKFDCSSNQLKEL---PSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
              E+    +L   D S N L        S     +L     S N + ++  +     ++
Sbjct: 340 AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL 220
             LD + + L  +S  ++  S   L  L  S              LS L  L +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 221 SI--PSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR- 276
               P   +   +L    +    L  L       LS L  L++ SNQLK   V       
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDR 516

Query: 277 ---LSVLDLSNNSLSGLPPEI 294
              L  + L  N      P I
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 54/273 (19%), Positives = 88/273 (32%), Gaps = 66/273 (24%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDGA---------------- 71

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                   S + L TLIL+ N I+       + LSSL  L      L  + +     +  
Sbjct: 72  ------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLRE-APTDILRLQQLRI----LDLS 505
           L+ L++++N I S      FS+L +L+ L L   +++    TD+  L Q+ +    LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 506 QNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
            N +  I  G      L +L L +N  S    +
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIM 104
           L+ L L+ N +  +  +   L  L  L+  H+ L ++        L  L  LD+S     
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 105 KIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPED-LADCS 160
              + I    ++L     + N  +E  LP       NL+    S   +  L        S
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            +  L++  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  182 bits (465), Expect = 5e-52
 Identities = 102/493 (20%), Positives = 172/493 (34%), Gaps = 74/493 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIMK 105
           LQ+ +   +N+ ++  +  N+   T    + ++     P   GE   +    +       
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-- 70

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                       + + ++  L  LP       +L    AS N +T LPE       +   
Sbjct: 71  --------RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +     L+ L   L         L  S N L  +PE + + S L  +D+  N +  +P  
Sbjct: 120 NNNLKALSDLPPLL-------EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL 171

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
                SL     GNN L  LP EL  L  L  +   +N LK+       L    +   NN
Sbjct: 172 PP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLE--SIVAGNN 225

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L  LP E+  +  L  +    N L+TL     +      L+ L   + +N         
Sbjct: 226 ILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPS------LEALN--VRDNY-------- 268

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
              +T    L  +   L +     S +         +  L+ S N I+ L     S   L
Sbjct: 269 ---LTDLPELPQSLTFLDVSENIFSGLSELP---PNLYYLNASSNEIRSLCDLPPS---L 319

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IAS 464
           + L +S NK+ + P         L  L    N L +VP         L+ L + YN +  
Sbjct: 320 EELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLRE 371

Query: 465 LPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTE 524
            P+         +++L +   L E P      Q L+ L +  N L+  P+      S+ +
Sbjct: 372 FPD-----IPESVEDLRMNSHLAEVPE---LPQNLKQLHVETNPLREFPD---IPESVED 420

Query: 525 LDLSDNNISALPP 537
           L ++   +     
Sbjct: 421 LRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  179 bits (456), Expect = 1e-50
 Identities = 113/521 (21%), Positives = 194/521 (37%), Gaps = 89/521 (17%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPL--LT 71
               + +L ++P E  +N     E    W   +           E     LR+       
Sbjct: 16  PLRHSSNLTEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +++  LS LP     L   +SL  S NS+ ++P+   S  +L+  + +   L +LP 
Sbjct: 75  ELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            L   L +S     NN +  LPE L + S +  +DV+ N L  L +        L  + A
Sbjct: 132 LL-EYLGVS-----NNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAA 180

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
             N L  +PE + +L  L  +    N +  +P       SL     GNN L  LP EL  
Sbjct: 181 GNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQN 235

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L  L T+   +N LK        L    L++ +N L+ LP     +T L       + L 
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPSLE--ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 293

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
            L  +L                                            L+     + +
Sbjct: 294 ELPPNL------------------------------------------YYLNASSNEIRS 311

Query: 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431
           +         + +L++S N + ELP        L+ LI S N + + P+       +L  
Sbjct: 312 LCDLP---PSLEELNVSNNKLIELPALPPR---LERLIASFNHLAEVPE----LPQNLKQ 361

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAP 490
           L ++ NPLR+ P         ++ L ++ ++A +PE        +L++L++    LRE P
Sbjct: 362 LHVEYNPLREFPDI----PESVEDLRMNSHLAEVPE-----LPQNLKQLHVETNPLREFP 412

Query: 491 TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNN 531
                 + +  L ++   +    E     T   E D+ +++
Sbjct: 413 DIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  171 bits (436), Expect = 6e-48
 Identities = 94/449 (20%), Positives = 175/449 (38%), Gaps = 73/449 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L L+N  L  +P                     L+ L+ + N++ +L E  ++L  L V
Sbjct: 75  ELELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQSLKSLLV 118

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
            N +   LS+LP       +L+ L VS N + K+P E+ +++ L   D  +N LK+LP  
Sbjct: 119 DNNNLKALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL 171

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                +L    A NN +  LPE L +   ++ +  + N L  L +        L  ++A 
Sbjct: 172 PP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAG 223

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N+L  +PE + +L  L  +    N + ++P       SL    + +N L+ LP     L
Sbjct: 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYLTDLPELPQSL 279

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
           + L   +   + L E         L  L+ S+N +  L        +L +L ++ N L  
Sbjct: 280 TFLDVSENIFSGLSELPPN-----LYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE 331

Query: 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 372
           L +          L+ L      N            +     L    K+L +E   L   
Sbjct: 332 LPALPPR------LERL--IASFNH-----------LAEVPELPQNLKQLHVEYNPLREF 372

Query: 373 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
           P        +  L ++ + + E+P       +L+ L +  N ++++PD       S+  L
Sbjct: 373 PDIP---ESVEDLRMN-SHLAEVPELPQ---NLKQLHVETNPLREFPD----IPESVEDL 421

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++++  +        +    L+     ++
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  154 bits (392), Expect = 1e-41
 Identities = 96/476 (20%), Positives = 162/476 (34%), Gaps = 97/476 (20%)

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP---------- 153
           M I     S T L +    S+ L E+P       + +++  + +                
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 154 --EDLADCSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
               L DC      +L++    L+ L          L  L+AS N L  +PE   SL  L
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELP----PHLESLVASCNSLTELPELPQSLKSL 116

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
           +  + +   +  +P        L    + NN L  LP EL   S L  +D+ +N LK+  
Sbjct: 117 LVDNNNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLP 169

Query: 270 VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                L    +   NN L  L PE+  +  L  +    N L+ L    ++      L+ +
Sbjct: 170 DLPPSLE--FIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLS------LESI 220

Query: 330 R------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
                    LPE             +     L      +  +   L  +P        + 
Sbjct: 221 VAGNNILEELPE-------------LQNLPFL----TTIYADNNLLKTLPDLP---PSLE 260

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
            L++  N + +LP       SL  L +S N      +       +L  L   +N +R + 
Sbjct: 261 ALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLC 313

Query: 444 SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRI 501
                  P L+ L++S N +  LP     +  P L+ L      L E P      Q L+ 
Sbjct: 314 D----LPPSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVPELP---QNLKQ 361

Query: 502 LDLSQNSLQSIPEGFKNLT----------------SLTELDLSDNNISALPPELVS 541
           L +  N L+  P+  +++                 +L +L +  N +   P    S
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  152 bits (385), Expect = 1e-40
 Identities = 93/462 (20%), Positives = 158/462 (34%), Gaps = 89/462 (19%)

Query: 83  LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSD 141
           +         L+      +++ ++P E  +  +  ++  + ++  +  P   G    ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
            +  +       E          L++    L+ L          L  L+AS N L  +PE
Sbjct: 63  SRLRDCLDRQAHE----------LELNNLGLSSLPELP----PHLESLVASCNSLTELPE 108

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
              SL  L+  + +   +  +P        L    + NN L  LP EL   S L  +D+ 
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161

Query: 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
           +N LK+       L    +   NN L  LP E+  +  L  +    N L+ L        
Sbjct: 162 NNSLKKLPDLPPSLE--FIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKL-------- 210

Query: 322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE 381
            P L   L                              + +      L  +P E+     
Sbjct: 211 -PDLPLSL------------------------------ESIVAGNNILEELP-ELQNLPF 238

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +T +    N ++ LP    S   L+ L +  N + D P+       SL+ L +  N    
Sbjct: 239 LTTIYADNNLLKTLPDLPPS---LEALNVRDNYLTDLPELP----QSLTFLDVSENIFSG 291

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQL 499
           +        P L  L+ S N I SL +       P L+EL +   +L E P       +L
Sbjct: 292 LSEL----PPNLYYLNASSNEIRSLCD-----LPPSLEELNVSNNKLIELPALP---PRL 339

Query: 500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 541
             L  S N L  +PE      +L +L +  N +   P    S
Sbjct: 340 ERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFPDIPES 378

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  176 bits (448), Expect = 8e-49
 Identities = 82/446 (18%), Positives = 161/446 (36%), Gaps = 53/446 (11%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           D  S     +PS L     +     S N IT +   DL  C+ +  L ++ +++  +  +
Sbjct: 11  DGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 179 LIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSS--ISGCCSLAEF 235
              S   L  L  S N L+ +     G LS L  L+L  N   ++  +       +L   
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 236 YMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLP 291
            +G     S +       L+ L  L++ +  L+ Y  ++ +    +  L L  +  + L 
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 292 PEIGK-MTTLRKLLLTGNPLRTLRSSLVNGPT-PALLKYLRSRLPENEDSEASTTKEDLI 349
                 ++++R L L    L   + S +      + +K L  R     D           
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD----------- 237

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS-------- 401
                              L  +   I E  E+   D + N + +  P  S         
Sbjct: 238 --------------ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 402 -CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
              +++ L + +  +      + + L  +  + ++N+ +  VP    + +  L+ LDLS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 461 N-IASLPENPP--FSSLPHLQELYLRM----QLREAPTDILRLQQLRILDLSQNSLQSIP 513
           N +            + P LQ L L       +++    +L L+ L  LD+S+N+   +P
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

Query: 514 EGFKNLTSLTELDLSDNNISALPPEL 539
           +  +    +  L+LS   I  +   +
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  175 bits (445), Expect = 2e-48
 Identities = 94/498 (18%), Positives = 179/498 (35%), Gaps = 56/498 (11%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
           +     V +      + +P+ +     +KSLD+SFN I  I                   
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG------------------ 42

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
                  L  C NL      ++ I ++  D       +  LD+  N L+ LS++     +
Sbjct: 43  ----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 185 MLTELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNN 240
            L  L    N    +  T    +L+ L  L +      S       +G  SL E  +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKM 297
           +L    ++ L  +  +  L LH ++          +   +  L+L + +L+        +
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-------RLPENEDSEASTTKEDLIT 350
             +   +       ++ +         LL+Y+             N   + + ++ D+++
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 351 MATRLSVTS-KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQT 407
              ++   + + L +    L    S ++    ++ ++ +  + +  +P        SL+ 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 408 LILSRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQVPSDG--FKDIPMLQILDLSYN- 461
           L LS N + +      A   +  SL  L L  N LR +   G     +  L  LD+S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 462 IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLT 520
              +P++        ++ L L    +R   T I   Q L +LD+S N+L S       L 
Sbjct: 399 FHPMPDS--CQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL---FLP 451

Query: 521 SLTELDLSDNNISALPPE 538
            L EL +S N +  LP  
Sbjct: 452 RLQELYISRNKLKTLPDA 469

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 47  LQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           LQ L+L+ N++  +++    L  L  LT L++S N    +P +      ++ L++S   I
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
             +   I     L   D S+N L      L     L +   S N + +LP+  +    + 
Sbjct: 423 RVVKTCI--PQTLEVLDVSNNNLDSFSLFLP---RLQELYISRNKLKTLPDA-SLFPVLL 476

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            + +  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  170 bits (432), Expect = 1e-48
 Identities = 57/289 (19%), Positives = 97/289 (33%), Gaps = 25/289 (8%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNL-----PLLTVLNVSHNKLSELPAAIGELHML 93
              W   +     +       LK     L     P    L +    L + P     L  L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS-NNCITSL 152
           + + +    +M++PD +     L     + N L+ LP+S+     L +        +T L
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212
           PE LA                  ++        L  L      +  +P +I +L  L  L
Sbjct: 167 PEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 213 DLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAELGKLSKLGTLDL-HSNQLKEYCV 270
            +  + + ++  +I     L E  + G  AL   P   G  + L  L L   + L    +
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 271 EACQLR-LSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           +  +L  L  LDL     LS LP  I ++     +L+  +    L    
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (354), Expect = 1e-37
 Identities = 55/388 (14%), Positives = 107/388 (27%), Gaps = 98/388 (25%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSFNSI 103
             Q+   A  N         N     +   +   L      + +       +L++    +
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
            + PD+    + L      +  L ELP ++ +   L     + N + +LP  +A  +++ 
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +L +                            L  +PE + S                  
Sbjct: 154 ELSIRAC-----------------------PELTELPEPLASTD--------------AS 176

Query: 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283
               G  +L    +    + +LPA +  L  L                        L + 
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNL----------------------KSLKIR 214

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
           N+ LS L P I  +  L +L L G                          P         
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALR-------------------NYPPI------- 248

Query: 344 TKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEAGEITKLDLSRNS-IQELPPELSS 401
                      L    K L L+  + L  +P +I    ++ KLDL     +  LP  ++ 
Sbjct: 249 -----FGGRAPL----KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 402 CASLQTLILSRNKIKDWPDAILTSLSSL 429
             +   +++  +           +  + 
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  135 bits (343), Expect = 7e-36
 Identities = 65/363 (17%), Positives = 111/363 (30%), Gaps = 62/363 (17%)

Query: 196 LNGMPETIGSLSRLIRLDLH-QNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK 254
           +          S    L       +      +S        Y  +             + 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNN 57

Query: 255 LGTLDLHSNQLKEYCVEACQLR---LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                     LK                L+L +  L   P +  +++ L+ + +    L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
            L  ++           L                              + L+L    L A
Sbjct: 118 ELPDTMQQ------FAGL------------------------------ETLTLARNPLRA 141

Query: 372 IPSEIWEAGEITKLDLSR-NSIQELPPELSSCA---------SLQTLILSRNKIKDWPDA 421
           +P+ I     + +L +     + ELP  L+S           +LQ+L L    I+  P +
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQE 479
           I  +L +L  LK+ N+PL  +       +P L+ LDL     + + P    F     L+ 
Sbjct: 202 I-ANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKR 257

Query: 480 LYLRM--QLREAPTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISALP 536
           L L+    L   P DI RL QL  LDL     L  +P     L +   + +  +  + L 
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 537 PEL 539
              
Sbjct: 318 QHR 320

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  172 bits (437), Expect = 6e-48
 Identities = 95/488 (19%), Positives = 181/488 (37%), Gaps = 58/488 (11%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
            I     I ++      L       +    +++  +   +L  + +L      I  I   
Sbjct: 7   TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID-G 63

Query: 110 IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169
           +     L + + S+NQL ++   L     L D   +NN I  +   LA+ + ++ L +  
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
           N++T +    + + T L  L  S N ++     +  L+ L +L    N++  +   ++  
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDL-KPLANL 176

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
            +L    + +N +S +   L KL+ L +L   +NQ+ +         L  L L+ N L  
Sbjct: 177 TTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
           +   +  +T L  L L  N +  L          + L  L                    
Sbjct: 236 IGT-LASLTNLTDLDLANNQISNL-------APLSGLTKL-------------------- 267

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409
                      EL L    +S I   +     +T L+L+ N ++++ P +S+  +L  L 
Sbjct: 268 ----------TELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT 315

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469
           L  N I D     ++SL+ L  L   NN +  V S    ++  +  L   +N   + +  
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHN--QISDLT 369

Query: 470 PFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS 528
           P ++L  + +L L       AP +      +     +       P    +  S TE D++
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429

Query: 529 DNNISALP 536
            N  S   
Sbjct: 430 WNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (385), Expect = 1e-40
 Identities = 90/426 (21%), Positives = 175/426 (41%), Gaps = 53/426 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L ++  ++N +  +   L+NL  L  + +++N+++++   +  L  L  L +  N I  I
Sbjct: 70  LTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI 127

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + + SSN + ++ + L    +L      N      P  LA+ + + +LD
Sbjct: 128 D-PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLD 183

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  NK++ +S   +A  T L  LIA+ N ++ +   +G L+ L  L L+ N++  I + +
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-L 239

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +   +L +  + NN +S L   L  L+KL  L L +NQ+      A    L+ L+L+ N 
Sbjct: 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L  + P I  +  L  L L  N +  + S + +      L  L                 
Sbjct: 299 LEDISP-ISNLKNLTYLTLYFNNISDI-SPVSS------LTKL----------------- 333

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L      +S +   +     I  L    N I +L P L++   + 
Sbjct: 334 -------------QRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT 378

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466
            L L+     + P     ++S  + +K     L  +      D       D+++N+ S  
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT 436

Query: 467 ENPPFS 472
               ++
Sbjct: 437 NEVSYT 442

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (362), Expect = 2e-37
 Identities = 79/416 (18%), Positives = 156/416 (37%), Gaps = 55/416 (13%)

Query: 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA 181
               + ++  +                +T       D  +++ L  +   +  +    + 
Sbjct: 10  QDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG--VE 65

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
               LT++  S N L  +   + +L++L+ + ++ N+I  I   ++   +L    + NN 
Sbjct: 66  YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123

Query: 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLR 301
           ++ +   L  L+ L  L+L SN + +    +    L  L   N         +  +TTL 
Sbjct: 124 ITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD--LKPLANLTTLE 180

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
           +L ++ N +  + S L        L  L                              + 
Sbjct: 181 RLDISSNKVSDI-SVLAK------LTNL------------------------------ES 203

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           L      +S I   +     + +L L+ N ++++   L+S  +L  L L+ N+I +    
Sbjct: 204 LIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP- 260

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
            L+ L+ L+ LKL  N +  +       +  L  L+L+ N   L +  P S+L +L  L 
Sbjct: 261 -LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN--QLEDISPISNLKNLTYLT 315

Query: 482 LRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           L        + +  L +L+ L    N +  +     NLT++  L    N IS L P
Sbjct: 316 LYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (333), Expect = 2e-33
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 30/370 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L +N I  + + L+NL  L  L +S N +S++ A +  L  L+ L    N +  +
Sbjct: 114 LTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDL 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + D SSN++ ++   L +  NL    A+NN I+ +   L   + + +L 
Sbjct: 171 K-PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELS 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           + GN+L  +    +AS T LT+L  + N ++ +   +  L++L  L L  N+I +I   +
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L 283

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +G  +L    +  N L  +   +  L  L  L L+ N + +    +   +L  L   NN 
Sbjct: 284 AGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           +S +   +  +T +  L    N +  L   ++L        +  L            +  
Sbjct: 343 VSDVSS-LANLTNINWLSAGHNQISDLTPLANLTR------ITQL----------GLNDQ 385

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                 +  + +V+              P+ I + G  T+ D++ N          + + 
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 405 LQTLILSRNK 414
             T+      
Sbjct: 446 PVTIGKGTTT 455

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  173 bits (439), Expect = 4e-47
 Identities = 76/314 (24%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+    L  +P+ +  +               +  L++  NN+  L         L  
Sbjct: 44  VLNVGESGLTTLPDCLPAH---------------ITTLVIPDNNLTSLPALPPE---LRT 85

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           L VS N+L+ LP     L  L         +  +P      + L K     NQL  LP  
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSLPVL 139

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                 L +   S+N + SLP      S++ KL    N+LT L        + L EL  S
Sbjct: 140 PP---GLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPMLP----SGLQELSVS 189

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N L  +P     L    +L  + NR+ S+P+  S    L E  +  N L++LP    +L
Sbjct: 190 DNQLASLPTLPSELY---KLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSEL 243

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
            +   L +  N+L    +    L    L +  N L+ LP  +  +++   + L GNPL  
Sbjct: 244 KE---LMVSGNRLTSLPMLPSGLL--SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298

Query: 313 LRSSLVNGPTPALL 326
                +   T A  
Sbjct: 299 RTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  156 bits (396), Expect = 3e-41
 Identities = 92/443 (20%), Positives = 152/443 (34%), Gaps = 94/443 (21%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
             W  A   ++       ++K++  L N     VLNV  + L+ LP  +     + +L +
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNG--NAVLNVGESGLTTLPDCLPAH--ITTLVI 68

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N++  +P        L   + S NQL  LP      L LS F      + +LP  L  
Sbjct: 69  PDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL-- 123

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
                KL + GN+LT L          L EL  S N L  +P     L +L     + N+
Sbjct: 124 ----CKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLPALPSELCKL---WAYNNQ 172

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278
           + S+P   S    L E  + +N L++LP    +L KL                       
Sbjct: 173 LTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKL----------------------- 206

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                NN L+ LP        L++L+++GN L +L         P L   L+        
Sbjct: 207 --WAYNNRLTSLPALPSG---LKELIVSGNRLTSL---------PVLPSELK-------- 244

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                                 EL + G  L+++P        +  L + RN +  LP  
Sbjct: 245 ----------------------ELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPES 279

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
           L   +S  T+ L  N + +     L  ++S               +   ++   L +   
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

Query: 459 SYNIASLPENP-PFSSLPHLQEL 480
            + + +    P P        + 
Sbjct: 340 DWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  144 bits (364), Expect = 5e-37
 Identities = 79/337 (23%), Positives = 128/337 (37%), Gaps = 75/337 (22%)

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
            +    L++ ++ + ++P  +     +    + +N L++LPA   +L    TL++  NQL
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELR---TLEVSGNQL 93

Query: 266 KEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
               V    L  LS+       L  LP      + L KL + GN L +L         P 
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSL---------PV 138

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L   L+                              ELS+    L+++P+      E+ K
Sbjct: 139 LPPGLQ------------------------------ELSVSDNQLASLPALP---SELCK 165

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L    N +  LP   S    LQ L +S N++   P       S L  L   NN L  +P+
Sbjct: 166 LWAYNNQLTSLPMLPSG---LQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA 218

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRIL 502
                   L+ L +S N + SLP          L+EL +   +L   P        L  L
Sbjct: 219 L----PSGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPMLP---SGLLSL 266

Query: 503 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
            + +N L  +PE   +L+S T ++L  N +S    + 
Sbjct: 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  139 bits (352), Expect = 2e-35
 Identities = 84/395 (21%), Positives = 129/395 (32%), Gaps = 76/395 (19%)

Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
                         +  + L+V  + LT L + L A    +T L+   N L  +P     
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPE 82

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L  L   ++  N++ S+P    G   L+ F      L ALP      S L  L +  NQL
Sbjct: 83  LRTL---EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQL 133

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               V    L+   L +S+N L+ LP    +   L KL    N L +L         P L
Sbjct: 134 TSLPVLPPGLQ--ELSVSDNQLASLPALPSE---LCKLWAYNNQLTSL---------PML 179

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385
              L+                              ELS+    L+++P+      E+ KL
Sbjct: 180 PSGLQ------------------------------ELSVSDNQLASLPTLP---SELYKL 206

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
               N +  LP   S    L+ LI+S N++   P       S L  L +  N L  +P  
Sbjct: 207 WAYNNRLTSLPALPSG---LKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPML 259

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILD 503
                  L  L +  N +  LPE+     L     + L    L E     L  +++    
Sbjct: 260 ----PSGLLSLSVYRNQLTRLPES--LIHLSSETTVNLEGNPLSERTLQAL--REITSAP 311

Query: 504 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
                +        +    T           +P  
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  101 bits (252), Expect = 1e-22
 Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 27/184 (14%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             L +   NL+++P+      E+  L++S N +  LP        L         +   P
Sbjct: 64  TTLVIPDNNLTSLPALP---PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 120

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
                  S L  L +  N L  +P       P LQ L +S N +ASLP          L 
Sbjct: 121 -------SGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA-----LPSELC 164

Query: 479 ELYLR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           +L+    QL   P        L+ L +S N L S+P      + L +L   +N +++LP 
Sbjct: 165 KLWAYNNQLTSLPMLP---SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA 218

Query: 538 ELVS 541
               
Sbjct: 219 LPSG 222

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 2e-17
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 22/168 (13%)

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCA--SLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
           +W A               +  ++ +C       L +  + +   PD +   +++L    
Sbjct: 11  VWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLV--- 67

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
           + +N L  +P+      P L+ L++S N + SLP       L  L      +  L   P+
Sbjct: 68  IPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPS 121

Query: 492 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
                  L  L +  N L S+P        L EL +SDN +++LP   
Sbjct: 122 ------GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP 160

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDILRLQQLRILDLSQNSLQ 510
             +L++  + + +LP+        H+  L +    L   P       +LR L++S N L 
Sbjct: 42  NAVLNVGESGLTTLPD----CLPAHITTLVIPDNNLTSLPALP---PELRTLEVSGNQLT 94

Query: 511 SIPEGFKNLTSLTELDLSDNNISALPPELVS 541
           S+P     L  L+       ++ ALP  L  
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSGLCK 125

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  169 bits (431), Expect = 3e-45
 Identities = 115/553 (20%), Positives = 196/553 (35%), Gaps = 83/553 (15%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED--LRNLPLL 70
            L LS   +R V    +                 LQ L L         +    RNLP L
Sbjct: 28  RLLLSFNYIRTVTASSFPFL------------EQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQL 126
            +L++  +K+  L   A   L  L  L + F  +           +  AL + D S NQ+
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 127 KELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + L    S G+  +L     S+N I  + E       +  L  +      L+ N + S  
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-----LEPLQGKTLSFFSLAANSLYSRV 190

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
            +          N           L  LD+  N      +              +NA+S 
Sbjct: 191 SVDWGKCMNPFRN---------MVLEILDVSGNGWTVDITGNF-----------SNAISK 230

Query: 245 LPA-ELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNNSLSGLPPEI-GKMT 298
             A  L     +       + +K+          +  +  LDLS+  +  L   +   + 
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMATRLSV 357
            L+ L L  N +  +      G     L+ L   L  N   E  S+    L  +      
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDN--LQVL--NLSYNLLGELYSSNFYGLPKV------ 340

Query: 358 TSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIK 416
               + L+  +++ I  + ++   ++  LDL  N++  +        S+  + LS NK+ 
Sbjct: 341 --AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLV 394

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSL 474
                +     + + + L  N L  +    F   +P LQIL L+ N  +S   +   S  
Sbjct: 395 T----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 475 PHLQELYL------RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELD 526
           P L++L+L           E   D+   L  L++L L+ N L S+P G F +LT+L  L 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 527 LSDNNISALPPEL 539
           L+ N ++ L    
Sbjct: 511 LNSNRLTVLSHND 523

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  160 bits (407), Expect = 3e-42
 Identities = 88/517 (17%), Positives = 166/517 (32%), Gaps = 99/517 (19%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
            D +       N+ ++    + L     L +S N +  + A +   L  L+ L++     
Sbjct: 4   FDGRIAFYRFCNLTQV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSK 161
            + I                         +     NL      ++ I  L  D       
Sbjct: 61  PLTID----------------------KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 221
           + +L +    L+                               +L  L RLDL +N+I S
Sbjct: 99  LFELRLYFCGLSDAVLK---------------------DGYFRNLKALTRLDLSKNQIRS 137

Query: 222 IPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ----LRL 277
           +                      L    GKL+ L ++D  SNQ+   C    +      L
Sbjct: 138 LY---------------------LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176

Query: 278 SVLDLSNNSLSGLPP-------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           S   L+ NSL               +   L  L ++GN      +   +        +  
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTS---KELSLEGMNLSAIPSEIWE-AGEITKLD 386
                   +             T   +     + L L    + ++ S ++E   ++  L+
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 387 LSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
           L+ N I ++  E      +LQ L LS N + +   +    L  ++ + L  N +  +   
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDILRLQQLRILD 503
            FK +  LQ LDL  N + ++        +P + +++L   +L   P   L       + 
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIH------FIPSIPDIFLSGNKLVTLPKINLTANL---IH 407

Query: 504 LSQNSLQSIPEG--FKNLTSLTELDLSDNNISALPPE 538
           LS+N L+++        +  L  L L+ N  S+   +
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  146 bits (369), Expect = 3e-37
 Identities = 96/562 (17%), Positives = 188/562 (33%), Gaps = 71/562 (12%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL---KEDLRNLPLL 70
           L+L +  +  +  + ++                L +L L    +          RNL  L
Sbjct: 78  LDLGSSKIYFLHPDAFQGLF------------HLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 71  TVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKIPDEI---GSATALVKFDCSSNQ 125
           T L++S N++  L    + G+L+ LKS+D S N I  + +          L  F  ++N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           L    S       +  R + L     S N  T                   N ++     
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-----------NAISKSQAF 234

Query: 179 LIASWTMLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
            +     +       + +    +      + S +  LDL    + S+ S +      L  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLP 291
             +  N ++ +  E    L  L  L+L  N L E          +++ +DL  N ++ + 
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 292 PEI-GKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +    +  L+ L L  N L T      +    ++G     L  +         SE    
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE---- 398
             D++    R+    + L L     S+   +   +    + +L L  N +Q         
Sbjct: 415 NLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 399 --LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
                 + LQ L L+ N +   P  + + L++L  L L++N L  +  +       L+IL
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 516
           D+S N           +      + L +        I   +    ++   ++  +I    
Sbjct: 532 DISRN--------QLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP 583

Query: 517 KNLTSLTELDLSDNNISALPPE 538
            ++  +     S  ++ +L  E
Sbjct: 584 ADIYCVYPDSFSGVSLFSLSTE 605

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 58/285 (20%), Positives = 94/285 (32%), Gaps = 75/285 (26%)

Query: 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331
           +C     +      +L+ +P  +    T  +LLL+ N +RT+ +S         L+ L+ 
Sbjct: 1   SCSFDGRIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPF-----LEQLQ- 51

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391
                                         L L                    L + + +
Sbjct: 52  -----------------------------LLELGSQYTP--------------LTIDKEA 68

Query: 392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ--VPSDGFKD 449
            + LP       +L+ L L  +KI          L  L  L+L    L    +    F++
Sbjct: 69  FRNLP-------NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDI---LRLQQLRILDL 504
           +  L  LDLS N I SL  +P F  L  L+ +     Q+          L+ + L    L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 505 SQNSLQSIPEG--------FKNLTSLTELDLSDNNISALPPELVS 541
           + NSL S            F+N+  L  LD+S N  +       S
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFS 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  160 bits (406), Expect = 1e-43
 Identities = 77/433 (17%), Positives = 136/433 (31%), Gaps = 75/433 (17%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
            C +  L ++P                     LP  +      + +D+  N +  L+   
Sbjct: 16  ICINRGLHQVPE--------------------LPAHV------NYVDLSLNSIAELNETS 49

Query: 180 IASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
            +    L  L   +          T   LS LI L L  N+ L + +             
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----------- 98

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPE 293
                         L+ L  L L    L    +     +    L +L L +N++  + P 
Sbjct: 99  -----------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 294 I--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                M     L LT N ++++    +          LR  L      + +         
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--LSSITLQDMNEYWLGWEKC 205

Query: 352 ATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLIL 410
                 TS   L L G       ++               +  ++   + S +       
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKR---------FFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 411 SRNKIKDWPDAILTSL--SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
                KD  +     L  S +    L  + +  +    F     L+ L L+ N I  + +
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 468 NPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTE 524
           N  F  L HL +L L    L    + +   L +L +LDLS N ++++ +  F  L +L E
Sbjct: 317 NA-FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375

Query: 525 LDLSDNNISALPP 537
           L L  N + ++P 
Sbjct: 376 LALDTNQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (284), Expect = 4e-27
 Identities = 73/433 (16%), Positives = 138/433 (31%), Gaps = 73/433 (16%)

Query: 45  VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFN 101
             +  + L+ N+I +L E     L  L  L V       +        L  L  L + +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCL-NLSDFKASNNCITSLPEDLA 157
             +++          L     +   L    L  +  + L +L      +N I  +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 158 DCS--KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
             +  +   LD+  NK+  +    + +               G   T+  LS +   D++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLN-------------FQGKHFTLLRLSSITLQDMN 196

Query: 216 QNRILSIPS-SISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCV 270
           +  +      +     S+    +  N      A+        +K+ +L L ++       
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                +    D  N +  GL       + ++   L+ + +  L  S       +    L 
Sbjct: 257 GHTNFK----DPDNFTFKGLEA-----SGVKTCDLSKSKIFALLKS-----VFSHFTDLE 302

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSR 389
                                         +L+L    ++ I     W    + KL+LS+
Sbjct: 303 ------------------------------QLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
           N +  +   +  +   L+ L LS N I+   D     L +L  L LD N L+ VP   F 
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 449 DIPMLQILDLSYN 461
            +  LQ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 82.9 bits (205), Expect = 4e-17
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 46/302 (15%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               C +        N  L  +P        +  + L+ N +  L  +  +      L++
Sbjct: 4   GTSECSVIGYNAICINRGLHQVPELP---AHVNYVDLSLNSIAELNETSFSRLQ--DLQF 58

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
           L  ++ +         + +     + L      L L+      + +  +     +  L L
Sbjct: 59  L--KVEQQTPG--LVIRNNTFRGLSSL----IILKLDYNQFLQLETGAFNGLANLEVLTL 110

Query: 388 SRNSIQE--LPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ ++    L         SL+ L+L  N IK   P +   ++     L L  N ++ + 
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 444 SDGFK----------DIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-----RMQLRE 488
            +              +  + + D++       +         +  L L     +  + +
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 489 APTDILRLQQLRILDL----------SQNSLQSIPEG-FKNL--TSLTELDLSDNNISAL 535
              D +   +++ L L             + +      FK L  + +   DLS + I AL
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290

Query: 536 PP 537
             
Sbjct: 291 LK 292

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           + L  N + ++    F  +  LQ L +       +  N  F  L  L  L L   Q  + 
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94

Query: 490 PTDIL-RLQQLRILDLSQNSLQS--IPEG-FKNLTSLTELDLSDNNISALPPE 538
            T     L  L +L L+Q +L    +    FK LTSL  L L DNNI  + P 
Sbjct: 95  ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 28/105 (26%), Positives = 37/105 (35%), Gaps = 32/105 (30%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRL 496
           L QVP     ++P  +  +DLS N IA L                         T   RL
Sbjct: 22  LHQVP-----ELPAHVNYVDLSLNSIAELN-----------------------ETSFSRL 53

Query: 497 QQLRILDLSQNSL-QSIPEG-FKNLTSLTELDLSDNNISALPPEL 539
           Q L+ L + Q +    I    F+ L+SL  L L  N    L    
Sbjct: 54  QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  159 bits (404), Expect = 3e-43
 Identities = 84/353 (23%), Positives = 138/353 (39%), Gaps = 49/353 (13%)

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-L 249
            +     +PE I   +    LDL +NRI ++     +    L E  +  N +SA+     
Sbjct: 19  HRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLT 306
             L  L TL L SN+LK   +        L+ LD+S N +  L   +   +  L+ L + 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            N L  +     +G     L  L                               +L+LE 
Sbjct: 137 DNDLVYISHRAFSG-----LNSLE------------------------------QLTLEK 161

Query: 367 MNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILT 424
            NL++IP+E       +  L L   +I  +          L+ L +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL- 482
              +L+ L + +  L  VP    + +  L+ L+LSYN I+++  +     L  LQE+ L 
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS-MLHELLRLQEIQLV 280

Query: 483 RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 533
             QL        R L  LR+L++S N L ++ E  F ++ +L  L L  N ++
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (353), Expect = 3e-36
 Identities = 60/310 (19%), Positives = 112/310 (36%), Gaps = 49/310 (15%)

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI 294
                A+P  +   ++   LDL  N++K   +   +      L  L+L+ N +S + P  
Sbjct: 20  RKRFVAVPEGI--PTETRLLDLGKNRIKT--LNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 295 -GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
              +  LR L L  N L+ +   +  G     L  L                        
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTG-----LSNLT----------------------- 107

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
                  +L +    +  +   +++    +  L++  N +  +     S   SL+ L L 
Sbjct: 108 -------KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           +  +   P   L+ L  L  L+L +  +  +    FK +  L++L++S+        P  
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 472 SSLPHLQELYL-RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 528
               +L  L +    L   P   +R L  LR L+LS N + +I       L  L E+ L 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 529 DNNISALPPE 538
              ++ + P 
Sbjct: 281 GGQLAVVEPY 290

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  136 bits (343), Expect = 8e-35
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 22/272 (8%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  +   +         +P  I   T  R L L  N ++TL            L+ L   
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFP--HLEEL--E 62

Query: 333 LPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRN 390
           L EN  S        +L  +        + L L    L  IP  +      +TKLD+S N
Sbjct: 63  LNENIVSAVEPGAFNNLFNL--------RTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 391 SIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKD 449
            I  L   +     +L++L +  N +        + L+SL  L L+   L  +P++    
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM--QLREAPTDILRLQQLRILDLSQ 506
           +  L +L L +  I ++ +   F  L  L+ L +     L     + L    L  L ++ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 507 NSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
            +L ++P    ++L  L  L+LS N IS +  
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (333), Expect = 2e-33
 Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 30/323 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           ++    +    VP  +                 + + L L  N I+ L +D   + P L 
Sbjct: 15  AVLCHRKRFVAVPEGI---------------PTETRLLDLGKNRIKTLNQDEFASFPHLE 59

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L ++ N +S +   A   L  L++L +  N +  IP  +    + L K D S N++  L
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              + + L NL   +  +N +  +     +  + + +L +E   LT +    ++    L 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSAL 245
            L      +N + + +   L RL  L++     L  +  +     +L    + +  L+A+
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI-GKMTT 299
           P   +  L  L  L+L  N +    +E   L    RL  + L    L+ + P     +  
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 300 LRKLLLTGNPLRTLRSSLVNGPT 322
           LR L ++GN L TL  S+ +   
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVG 320

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (279), Expect = 2e-26
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 20/261 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
           +L L +  L+ +P  V+                 L KL ++ N I  L + + ++L  L 
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSN------------LTKLDISENKIVILLDYMFQDLYNLK 131

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L V  N L  +   A   L+ L+ L +   ++  IP E       L+        +  +
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 130 PS-SLGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              S  R   L   + +    + ++  +      ++ L +    LT +    +     L 
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
            L  S N ++ +  ++   L RL  + L   ++  +      G   L    +  N L+ L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 246 PAEL-GKLSKLGTLDLHSNQL 265
              +   +  L TL L SN L
Sbjct: 312 EESVFHSVGNLETLILDSNPL 332

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  157 bits (398), Expect = 2e-42
 Identities = 80/528 (15%), Positives = 175/528 (33%), Gaps = 79/528 (14%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA- 293

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
                   +  P    L  L+ +                             LS +G   
Sbjct: 294 ---YCCEDLPAPFADRLIALKRK-------------------------EHALLSGQGSET 325

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSS 428
             +  E        ++D  +   + +  ++     +  TL   +  + +       + + 
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLRE 488
           L                       +  ++L +           S L  L+ +  R +   
Sbjct: 386 LDGTLQQA----------------VGQIELQHATEEQ------SPLQLLRAIVKRYEEMY 423

Query: 489 APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTE---LDLSDNNIS 533
                ++   +R  D+ Q+    + E    L  L     L L+  N +
Sbjct: 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  144 bits (364), Expect = 1e-37
 Identities = 54/397 (13%), Positives = 126/397 (31%), Gaps = 30/397 (7%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L ++
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EH 173

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L   L  N           +  +  ++     K L L    L+ +  E   A  +T + L
Sbjct: 174 LN--LQYNF----------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 388 SRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
             N +  +   L    +L+   L  N              +     +    ++++     
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNE 280

Query: 448 KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR------MQLREAPTDILRLQQLRI 501
           ++  +  +             P    L  L+            +      +     + R 
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 502 LDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
           +D  +   +++ +       +   L+     +     
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (296), Expect = 1e-28
 Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 47/267 (17%)

Query: 276 RLSVLDLSNNSLSGLPPEIGK-MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R  +  ++++SL      + +    +++L L+GNPL  + ++ +          L     
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-----FTKLE---- 61

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
                                      L+L    L     ++     +  LDL+ N +QE
Sbjct: 62  --------------------------LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE 94

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           L        S++TL  + N I     +      ++    L NN +  +          +Q
Sbjct: 95  LLV----GPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 455 ILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSI 512
            LDL  N I ++      +S   L+ L L    + +    ++   +L+ LDLS N L  +
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFM 206

Query: 513 PEGFKNLTSLTELDLSDNNISALPPEL 539
              F++   +T + L +N +  +   L
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKAL 233

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 2e-28
 Identities = 55/301 (18%), Positives = 86/301 (28%), Gaps = 52/301 (17%)

Query: 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPE-IGKMTTL 300
           A+       ++     +  + LK+      Q    +  LDLS N LS +    +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
             L L+ N L               L  LR                              
Sbjct: 61  ELLNLSSNVLYET-------LDLESLSTLR------------------------------ 83

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
            L L    +  +         I  L  + N+I  +    S     + + L+ NKI    D
Sbjct: 84  TLDLNNNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRD 137

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
                 S +  L L  N +  V           L+ L+L YN I  +           L+
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ---VVFAKLK 194

Query: 479 ELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
            L L   +L     +      +  + L  N L  I +  +   +L   DL  N       
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 538 E 538
            
Sbjct: 255 R 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  152 bits (386), Expect = 9e-42
 Identities = 68/396 (17%), Positives = 148/396 (37%), Gaps = 51/396 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              L      I ++     +L       +    ++++     EL  +  L V+   +  I
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I   T L   + + NQ+ ++   L   + L++     N IT +   L + + + +L 
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELY 116

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  + ++ +S   +A+ T +  L    N        + +++ L  L + ++++  +   I
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-I 173

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +    L    +  N +  +   L  L+ L     + NQ+ +    A   RL+ L + NN 
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           ++ L P +  ++ L  L +  N +  + +++ +      L  L+                
Sbjct: 233 ITDLSP-LANLSQLTWLEIGTNQISDI-NAVKD------LTKLK---------------- 268

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASL 405
                          L++    +S I   +    ++  L L+ N +     E +    +L
Sbjct: 269 --------------MLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
            TL LS+N I D     L SLS +      N  +++
Sbjct: 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 5e-39
 Identities = 80/398 (20%), Positives = 155/398 (38%), Gaps = 56/398 (14%)

Query: 139 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198
            +        I  +    AD ++  +  ++   +T +          +T+L+ +   +  
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258
           +   I  L+ L  L+L+ N+I  I   +S    L   Y+G N ++ + A L  L+ L  L
Sbjct: 59  IQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLREL 115

Query: 259 DLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
            L+ + + +    A   ++  L+L  N        +  MT L  L +T + ++ + + + 
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIA 174

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
           N      L  L                                LSL    +  I S +  
Sbjct: 175 N------LTDL------------------------------YSLSLNYNQIEDI-SPLAS 197

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
              +       N I ++ P +++   L +L +  NKI D     L +LS L+ L++  N 
Sbjct: 198 LTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254

Query: 439 LRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILR- 495
           +  +     KD+  L++L++  N I+ +      ++L  L  L+L   QL     +++  
Sbjct: 255 ISDIN--AVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 496 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533
           L  L  L LSQN +  I     +L+ +   D ++  I 
Sbjct: 310 LTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (349), Expect = 1e-36
 Identities = 74/377 (19%), Positives = 140/377 (37%), Gaps = 53/377 (14%)

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
           + L      +  +     A        +  K  +     T   L  + +L +   ++ SI
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD-VVTQEELESITKLVVAGEKVASI 59

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
              I    +L    +  N ++ +   L  L KL  L + +N++ +         L  L L
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           + +++S + P +  +T +  L L  N   +  S L N      +  L             
Sbjct: 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSN------MTGL------------- 157

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
                              L++    +  +   I    ++  L L+ N I+++ P L+S 
Sbjct: 158 -----------------NYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP-LASL 198

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            SL       N+I D     + +++ L+ LK+ NN +  +      ++  L  L++  N 
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQ 254

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
           I+ +        L  L+ L +        + +  L QL  L L+ N L +   E    LT
Sbjct: 255 ISDIN---AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 521 SLTELDLSDNNISALPP 537
           +LT L LS N+I+ + P
Sbjct: 312 NLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.1 bits (214), Expect = 2e-18
 Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 8/157 (5%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             L      I ++ P  +  A     +L +  + D        L S++ L +    +  +
Sbjct: 3   ATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI 59

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRIL 502
              G + +  L+ L+L+ N   + +  P S+L  L  LY+        + +  L  LR L
Sbjct: 60  Q--GIEYLTNLEYLNLNGN--QITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL 115

Query: 503 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
            L+++++  I     NLT +  L+L  N+  +    L
Sbjct: 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPL 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  154 bits (391), Expect = 3e-41
 Identities = 86/464 (18%), Positives = 169/464 (36%), Gaps = 27/464 (5%)

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP 153
            +D S N ++ +P ++   T     + S N + EL +S +     L     S+N I  L 
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 154 ED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLI 210
                   ++  LD+  NKL  +S         L  L  S N  + +P     G++S+L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK---- 266
            L L    +           ++++  +          +   L    T  LH         
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            + ++     ++ L+LSN        +     ++   L T   L  L  + +     + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 327 KYL----RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN---LSAIPSEIWEA 379
           + L     + +     S      +           + K LS+  +         S I+E 
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 380 -GEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
              +   + + +  + +     S  +    L  S N + D        L+ L  L L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 438 PLRQVP--SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDI 493
            L+++   ++    +  LQ LD+S N ++   +    S    L  L +    L +     
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           L   ++++LDL  N ++SIP+    L +L EL+++ N + ++P 
Sbjct: 419 L-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  152 bits (385), Expect = 2e-40
 Identities = 100/528 (18%), Positives = 187/528 (35%), Gaps = 61/528 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ S   L  VP ++               +     L ++ N I +L   D+ +L  L 
Sbjct: 4   LVDRSKNGLIHVPKDL---------------SQKTTILNISQNYISELWTSDILSLSKLR 48

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           +L +SHN++  L          L+ LD+S N ++KI         L   D S N    LP
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP 106

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                                + ++  + S++  L +    L   S   IA   +   L+
Sbjct: 107 ---------------------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
                     E    L       LH     +          ++   + N  LS +   L 
Sbjct: 146 VLGETYGE-KEDPEGLQDFNTESLHIVFPTN--KEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
                  L + +       +    L L+ ++ + NS   +   +   TT+    ++   L
Sbjct: 203 DNKCSYFLSILAKLQTNPKLS--NLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKL 259

Query: 311 RTLRSSLVNGPTPALLKYLR-SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           +          +   LK L   ++  +      +   ++ +     + T     +  M  
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSL 426
            +  S          LD S N + +   E       L+TLIL  N++K+      + T +
Sbjct: 320 PSKISPF------LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRM- 484
            SL  L +  N +      G       L  L++S N   L +       P ++ L L   
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN--ILTDTIFRCLPPRIKVLDLHSN 431

Query: 485 QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 531
           +++  P  +++L+ L+ L+++ N L+S+P+G F  LTSL ++ L  N 
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  133 bits (337), Expect = 8e-34
 Identities = 82/439 (18%), Positives = 145/439 (33%), Gaps = 47/439 (10%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           D S N L  +P  L +   + +   S N I+ L   D+   SK+  L +  N++  L  +
Sbjct: 6   DRSKNGLIHVPKDLSQKTTILNI--SQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
           +      L  L  S N L  +         L  LDL  N   ++P               
Sbjct: 64  VFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP--------------- 106

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLRLSVLDLSNNSLSGLPPEIG-- 295
                 +  E G +S+L  L L +  L++  V     L +S + L      G   +    
Sbjct: 107 ------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 296 ---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
                 +L  +  T      +    V       L  ++  L +N+ S   +    L T  
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE------LSSCASLQ 406
              ++T   +     +   I   +W    +    +S   +Q            +S  +L 
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASL 465
              +  +        I    S+++      +  R V       I     LD S N +   
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 466 PENPPFSSLPHLQELYLRM----QLREAPTDILRLQQLRILDLSQNSLQSI--PEGFKNL 519
                   L  L+ L L+M    +L +      +++ L+ LD+SQNS+            
Sbjct: 340 VFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 520 TSLTELDLSDNNISALPPE 538
            SL  L++S N ++     
Sbjct: 399 KSLLSLNMSSNILTDTIFR 417

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (252), Expect = 6e-23
 Identities = 93/484 (19%), Positives = 163/484 (33%), Gaps = 87/484 (17%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
           LN+S   + ++      +               L+ LI++HN I+ L     +    L  
Sbjct: 26  LNISQNYISELWTSDILSL------------SKLRILIISHNRIQYLDISVFKFNQELEY 73

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKELP 130
           L++SHNKL ++         LK LD+SFN+   +P   E G+ + L     S+  L++  
Sbjct: 74  LDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                 LN+S             ED       +   +     T    + I   ++ T   
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 191 AS-----------------KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC---- 229
                                L         S   L  ++   N  + I   +       
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 230 ---------------------CSLAEFYM---GNNALSALPAEL-GKLSKLGTLDLHSNQ 264
                                 SL    +    ++      + +    S +   +   + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 265 LKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGP 321
            +   +           LD SNN L+    E  G +T L  L+L  N L+ L  S +   
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL--SKIAEM 369

Query: 322 TPAL--LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA--IPSEIW 377
           T  +  L+ L   + +N            ++   +    S   SL  +N+S+  +   I+
Sbjct: 370 TTQMKSLQQLD--ISQNS-----------VSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

Query: 378 EA--GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 I  LDL  N I+ +P ++    +LQ L ++ N++K  PD I   L+SL  + L 
Sbjct: 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

Query: 436 NNPL 439
            NP 
Sbjct: 477 TNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELHMLKS---LDVSF 100
                L  ++N +     +   +L  L  L +  N+L EL         +KS   LD+S 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 101 NSIMKIPDEIG--SATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITSLPEDL 156
           NS+     +       +L+  + SSN L +      RCL   +      +N I S+P+ +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---RCLPPRIKVLDLHSNKIKSIPKQV 440

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
                + +L+V  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 41/266 (15%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           ++D S N L  +P ++        L ++ N +  L +S +       L  LR        
Sbjct: 4   LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILS-----LSKLR-------- 48

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
                                  L +    +  +   +++   E+  LDLS N + ++  
Sbjct: 49  ----------------------ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC 86

Query: 398 ELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
                 +L+ L LS N     P      ++S L  L L    L +        + + ++L
Sbjct: 87  H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 516
            +        E+P      + + L++     +    IL +    + +L  ++++ + E  
Sbjct: 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204

Query: 517 KNLTSLTELDLSDNNISALPPELVSV 542
           K    L+ L     N       L ++
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNI 230

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  146 bits (371), Expect = 5e-40
 Identities = 55/299 (18%), Positives = 117/299 (39%), Gaps = 24/299 (8%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (339), Expect = 1e-35
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 15/260 (5%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIP-DEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I  ++     +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRTL 313
           +     L    L GN     
Sbjct: 233 LRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 2e-32
 Identities = 54/301 (17%), Positives = 85/301 (28%), Gaps = 52/301 (17%)

Query: 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPE-IGKMTTL 300
           A+       ++     +  + LK+      Q    +  LDLS N LS +    +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
             L L+ N L               L  LR                              
Sbjct: 61  ELLNLSSNVLYET-------LDLESLSTLR------------------------------ 83

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
            L L    +  +         I  L  + N+I  +          + + L+ NKI    D
Sbjct: 84  TLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRD 137

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
                 S +  L L  N +  V           L+ L+L YN I  +           L+
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ---VVFAKLK 194

Query: 479 ELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
            L L   +L     +      +  + L  N L  I +  +   +L   DL  N       
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 538 E 538
            
Sbjct: 255 R 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  124 bits (314), Expect = 5e-32
 Identities = 51/267 (19%), Positives = 100/267 (37%), Gaps = 47/267 (17%)

Query: 276 RLSVLDLSNNSLSGLPPEIGK-MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R  +  ++++SL      + +    +++L L+GNPL  +                     
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--------------------- 49

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
                         +   T+L    + L+L    L     ++     +  LDL+ N +QE
Sbjct: 50  ----------SAADLAPFTKL----ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE 94

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           L        S++TL  + N I     +      ++    L NN +  +          +Q
Sbjct: 95  LLV----GPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQ 147

Query: 455 ILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSI 512
            LDL  N I ++      +S   L+ L L+   + +    ++   +L+ LDLS N L  +
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFM 206

Query: 513 PEGFKNLTSLTELDLSDNNISALPPEL 539
              F++   +T + L +N +  +   L
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKAL 233

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (309), Expect = 3e-31
 Identities = 60/362 (16%), Positives = 120/362 (33%), Gaps = 50/362 (13%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L   
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
                                          + L+L+   +  +  ++    ++  LDLS
Sbjct: 172 -------------------------------EHLNLQYNFIYDVKGQV-VFAKLKTLDLS 199

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP-SDGF 447
            N +  + PE  S A +  + L  NK+     A+     +L    L  N        D F
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 448 KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQN 507
                +Q +          +N    ++P L   Y      + P         R++ L  +
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH-YGAYCCEDLPAPFA----DRLIALGHH 313

Query: 508 SL 509
             
Sbjct: 314 HH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (296), Expect = 1e-29
 Identities = 58/345 (16%), Positives = 103/345 (29%), Gaps = 75/345 (21%)

Query: 198 GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 257
            + E   + +R     +  + +    +S+                            +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL----------------------RQSAWNVKE 38

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
           LDL  N L +          +L +L+LS+N L      +  ++TLR L L  N ++ L  
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-- 95

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
                  P++                                  + L     N+S +   
Sbjct: 96  ----LVGPSI----------------------------------ETLHAANNNISRVSCS 117

Query: 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLK 433
             +      + L+ N I  L   +    + +Q L L  N+I       +  S  +L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
           L  N +  V          L+ LDLS N +A +     F S   +  + LR  +L     
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231

Query: 492 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 536
            +   Q L   DL  N             +     ++   +  L 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  148 bits (376), Expect = 6e-40
 Identities = 72/379 (18%), Positives = 134/379 (35%), Gaps = 63/379 (16%)

Query: 168 EGNKLTVLSNNLIASWTM-----LTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILS 221
               + + + ++   +          +    + +  +P   + S  ++  L+L+  +I  
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 83

Query: 222 IPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRL 277
           I +   +   ++ + YMG NA+  LP      +  L  L L  N L            +L
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143

Query: 278 SVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
           + L +SNN+L  +  +     T+L+ L L+ N L  +          +L+  L       
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------DLSLIPSLF------ 189

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                                     ++    LS +   I     + +LD S NSI  + 
Sbjct: 190 ------------------------HANVSYNLLSTLAIPI----AVEELDASHNSINVVR 221

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             +     L  L L  N + D     L +   L  + L  N L ++    F  +  L+ L
Sbjct: 222 GPV--NVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 457 DLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPE 514
            +S N + +L        +P L+ L L    L     +  +  +L  L L  NS+ ++  
Sbjct: 278 YISNNRLVALNL--YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 335

Query: 515 GFKNLTSLTELDLSDNNIS 533
                 +L  L LS N+  
Sbjct: 336 S--THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (348), Expect = 3e-36
 Identities = 71/430 (16%), Positives = 146/430 (33%), Gaps = 81/430 (18%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
             +                        +  K++ L +  N L  + ++   + T L  L 
Sbjct: 134 RGI----------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
            S N L  +   +  +  L   ++  N + ++   I    ++ E    +N+++ +   + 
Sbjct: 172 LSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV- 224

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
              +L  L L  N L +         L  +DLS N L  +      KM  L +L ++ N 
Sbjct: 225 -NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           L  L            +  L+                               L L   +L
Sbjct: 284 LVALNLYGQP------IPTLK------------------------------VLDLSHNHL 307

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
             +     +   +  L L  NSI  L    S+  +L+ L LS N      +++     ++
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWD--CNSLRALFRNV 363

Query: 430 SCLKLDNNPL 439
           +   +D+   
Sbjct: 364 ARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  136 bits (345), Expect = 9e-36
 Identities = 67/400 (16%), Positives = 132/400 (33%), Gaps = 56/400 (14%)

Query: 64  LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCS 122
             ++ +       +    ++      L+  K +    +++ K+P  +  S   +   + +
Sbjct: 23  FYDVHIDMQTQDVYFGFEDIT-----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 123 SNQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLI 180
             Q++E+ + +      +       N I  LP     +   ++ L +E N L+ L   + 
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 181 ASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
            +   LT L  S N L  +  +T  + + L  L L  NR+  +   +S   SL    +  
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 195

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N LS L         +  LD   N +           L++L L +N+L+     +     
Sbjct: 196 NLLSTLA----IPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDTA-WLLNYPG 249

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L ++ L+ N L  +            ++ L                              
Sbjct: 250 LVEVDLSYNELEKIMYHPFVK-----MQRLE----------------------------- 275

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             L +    L A+         +  LDLS N +  +         L+ L L  N I    
Sbjct: 276 -RLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDL 458
            +   +L +   L L +N          F+++    + D 
Sbjct: 335 LSTHHTLKN---LTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  132 bits (334), Expect = 3e-34
 Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 54/316 (17%)

Query: 231 SLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSL 287
           +       N+ +  LPA  L    ++  L+L+  Q++E    A      +  L +  N++
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 288 SGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
             LPP +   +  L  L+L  N L +L   + +         L                 
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN-----TPKL----------------- 143

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASL 405
                          LS+   NL  I  + ++A   +  L LS N +  +    S   SL
Sbjct: 144 -------------TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSL 188

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465
               +S N +       L    ++  L   +N +  V      +   L IL L +N  +L
Sbjct: 189 FHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHN--NL 238

Query: 466 PENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLT 523
            +     + P L E+ L   +L +        +Q+L  L +S N L ++    + + +L 
Sbjct: 239 TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK 298

Query: 524 ELDLSDNNISALPPEL 539
            LDLS N++  +    
Sbjct: 299 VLDLSHNHLLHVERNQ 314

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (300), Expect = 1e-29
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 24/277 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L L    L  +P  ++ N               L  L +++NN+E++++D  +    L 
Sbjct: 121 VLVLERNDLSSLPRGIFHN------------TPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +S N+L+ +   +  +  L   +VS+N +  +   I    A+ + D S N +  +  
Sbjct: 169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRG 222

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            +   + L+  K  +N +T     L +   + ++D+  N+L  +  +       L  L  
Sbjct: 223 PV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
           S N L  +      +  L  LDL  N +L +  +      L   Y+ +N++  L   L  
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LST 337

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L  L L  N      + A    ++   + +    
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  142 bits (360), Expect = 3e-37
 Identities = 80/437 (18%), Positives = 157/437 (35%), Gaps = 43/437 (9%)

Query: 47  LQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
               + A   ++         L  LT L+  ++ ++++   I +L  L  L  + N+I  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT 78

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   +   T L    C SN+L  L   +     L+      N +T L   ++    ++ L
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +   N LT +    ++  T LTEL    N      + +   ++L  LD   N+I  +   
Sbjct: 133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-- 186

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +S    L       N ++ L   L +  +L  LD  SN+L E  V     +L+  D S N
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-QLTYFDCSVN 243

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L+ L   +  ++ L  L      L  +  +               +L   +       K
Sbjct: 244 PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNT------------QLIYFQAEGCRKIK 289

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           E  +T  T+L      L  +   ++ +   + +  ++  L L+   + EL   +S    L
Sbjct: 290 ELDVTHNTQL----YLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKL 341

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465
           ++L      I+D+    +  + +L+           +P +   +      + +S ++   
Sbjct: 342 KSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNN--SLTIAVSPDLLDQ 397

Query: 466 PENPPFSSLPHLQELYL 482
             NP             
Sbjct: 398 FGNPMNIEPGDGGVYDQ 414

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  124 bits (312), Expect = 8e-31
 Identities = 78/428 (18%), Positives = 140/428 (32%), Gaps = 70/428 (16%)

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
            V           +  S  +   L+     N+ IT +   +   + ++KL    N +T L
Sbjct: 23  EVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL 79

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
               ++  T LT L    N L  +   +  L++L  L+   N++  +   +S    L   
Sbjct: 80  D---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG 295
               N L+ +   +   ++L  LD H N+         Q +L+ LD S N ++ L   + 
Sbjct: 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VS 188

Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355
           +   L +L    N +    + L       L                              
Sbjct: 189 QNKLLNRLNCDTNNI----TKLDLNQNIQL------------------------------ 214

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
                 L      L+ I   +    ++T  D S N + EL   +S+ + L TL   +  +
Sbjct: 215 ----TFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDL 266

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
            +      T L             R++          L +LD     I  L      S  
Sbjct: 267 LEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLLDCQAAGITELD----LSQN 317

Query: 475 PHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533
           P L  LYL   +L E   D+    +L+ L      +Q        + +L     ++    
Sbjct: 318 PKLVYLYLNNTELTE--LDVSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTI 374

Query: 534 ALPPELVS 541
            +P E ++
Sbjct: 375 TMPKETLT 382

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.8 bits (244), Expect = 6e-22
 Identities = 52/254 (20%), Positives = 90/254 (35%), Gaps = 21/254 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L    NNI KL  DL     LT L+ S NKL+E+   +  L  L   D S N + ++
Sbjct: 193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL 248

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + + L    C    L E+   L     L  F+A          D+   +++  LD
Sbjct: 249 D--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLD 303

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            +   +T L    ++    L  L  +   L  +   +   ++L  L      I     S+
Sbjct: 304 CQAAGITELD---LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SV 357

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKL------GTLDLHSNQLKEYCVEACQLRLSVL 280
               +L   +        +P E    + L        LD   N +     +      +  
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 281 DLSNNSLSGLPPEI 294
            ++  +LS   P +
Sbjct: 418 TITWENLSTDNPAV 431

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.3 bits (196), Expect = 5e-16
 Identities = 59/288 (20%), Positives = 96/288 (33%), Gaps = 59/288 (20%)

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
            +                 E     L+ LD  N+S++ +   I K+T L KL+ T N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLA-TLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNIT 77

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
           TL          +    L                                L+ +   L+ 
Sbjct: 78  TL--------DLSQNTNL------------------------------TYLACDSNKLTN 99

Query: 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431
           +   +    ++T L+   N + +L   +S    L  L  +RN + +   +  T L+ L C
Sbjct: 100 LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDC 155

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
                +  +++          L  LD S+N I  L      S    L  L      + + 
Sbjct: 156 -----HLNKKITKLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKL 206

Query: 490 PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
             D+ +  QL  LD S N L  I      LT LT  D S N ++ L  
Sbjct: 207 --DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDV 250

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  142 bits (359), Expect = 1e-36
 Identities = 67/404 (16%), Positives = 126/404 (31%), Gaps = 73/404 (18%)

Query: 143 KASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           +   N     PE     S +    V     + + + ++   +  +T              
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-------------- 49

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLD 259
               L+    +    + +  +P+++      +    + +  +  +          +  L 
Sbjct: 50  ----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 105

Query: 260 LHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSS 316
           +  N ++       Q    L+VL L  N LS LP  I      L  L ++ N L  +   
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376
                       L+                               L L    L+ +   +
Sbjct: 166 TFQA-----TTSLQ------------------------------NLQLSSNRLTHVDLSL 190

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
                +   ++S N +  L   ++    ++ L  S N I      +   L+ L    L +
Sbjct: 191 IP--SLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILK---LQH 241

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDIL 494
           N L         + P L  +DLSYN +  +  +P F  +  L+ LY+   +L        
Sbjct: 242 NNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVALNLYGQ 298

Query: 495 RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
            +  L++LDLS N L  +         L  L L  N+I  L   
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS 342

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  138 bits (348), Expect = 5e-35
 Identities = 109/537 (20%), Positives = 183/537 (34%), Gaps = 44/537 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
            LNL++  + ++    +              A  +QKL +  N I  L   + +N+PLLT
Sbjct: 79  LLNLNDLQIEEIDTYAFAY------------AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL +  N LS LP  I      L +L +S N++ +I D+   + T+L     SSN+L  +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
             SL    +L     S N +++L         + +LD   N + V+   +      LT L
Sbjct: 187 DLSLIP--SLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVE---LTIL 237

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE 248
               N L      + +   L+ +DL  N +  I          L   Y+ NN L AL   
Sbjct: 238 KLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307
              +  L  LDL  N L        Q  RL  L L +NS+  L        TL+ L L+ 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSH 354

Query: 308 NPLRT--LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL- 364
           N      LR+   N   PA+    +    + +       KE       RL       S+ 
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
           E +  +       +     +      + Q   P   +      +   R +++   +  + 
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM 484
               L  L  + +   +        +                 N  F+ L   Q   LR 
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDN----------LNKVFTHLKERQAFKLRE 524

Query: 485 QLREAPTDILRLQQLRILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPEL 539
                     + ++   L+    +L+   +    K      E  L    +  L  + 
Sbjct: 525 TQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (332), Expect = 7e-33
 Identities = 91/526 (17%), Positives = 181/526 (34%), Gaps = 49/526 (9%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 131 SSL-GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
             +      L+    SNN +  + +D     + +  L +  N+LT +  +LI S   L  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFH 196

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
              S NLL     T+     +  LD   N I  +   +     L    + +N L+     
Sbjct: 197 ANVSYNLL----STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW- 249

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           L     L  +DL  N+L++          RL  L +SNN L  L      + TL+ L L+
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            N L  +  +         L+ L   L  N           ++T+      T K L+L  
Sbjct: 310 HNHLLHVERNQPQFDR---LENL--YLDHNS----------IVTLKLSTHHTLKNLTLSH 354

Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
            +                 +++R ++ +          L+  +  +   K + D +L  +
Sbjct: 355 NDWDCNSLRALFR------NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQL 486
           +  S +      +++          +  +  LS+ I      P   +     E+      
Sbjct: 409 ALTSVV----EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAE 464

Query: 487 REAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 532
            +  T+    Q+  +  L      ++         L     + N +
Sbjct: 465 VQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKV 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  140 bits (353), Expect = 9e-36
 Identities = 101/530 (19%), Positives = 185/530 (34%), Gaps = 67/530 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ SNR+L  VP ++                   + L L+ N+I +L+  D+  L  L 
Sbjct: 35  MVDYSNRNLTHVPKDL---------------PPRTKALSLSQNSISELRMPDISFLSELR 79

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           VL +SHN++  L   +      L+ LDVS N +  I        +L   D S N    LP
Sbjct: 80  VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLP 137

Query: 131 SS--LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                G    L+    S      L         +S + ++     +      +     T 
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           ++      N +     ++S      L  + I     +     +          L  +  +
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
             + +   ++ L                +  L++ N +++             +   +  
Sbjct: 258 HIETTWKCSVKLFQFFWPRP--------VEYLNIYNLTITERID-------REEFTYSET 302

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L++L                   +       +      +        ++  +     M 
Sbjct: 303 ALKSLM---------------IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC-ASLQTLILSRNKIKDWPDA--ILTS 425
               PS        T L+ ++N   +   +  S    LQTLIL RN +K++     +  +
Sbjct: 348 CPPSPS------SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLP-HLQELYLR 483
           +SSL  L +  N L     D        + +L+LS N   L  +  F  LP  ++ L L 
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN--MLTGS-VFRCLPPKVKVLDLH 458

Query: 484 M-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 531
             ++   P D+  LQ L+ L+++ N L+S+P+G F  LTSL  + L DN 
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  126 bits (318), Expect = 3e-31
 Identities = 80/433 (18%), Positives = 147/433 (33%), Gaps = 46/433 (10%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI- 203
           SN  +T +P+DL    +   L +  N ++ L    I+  + L  L  S N +  +   + 
Sbjct: 39  SNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
                L  LD+  NR+ +I        SL    +  N    LP   E G L+KL  L L 
Sbjct: 97  LFNQDLEYLDVSHNRLQNISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 262 SNQLKE---YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           + + ++     V    L   +LDL +  + G   E  ++     L L  +P       + 
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 319 NGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
                     L + +L +       T   +L    T L+VT + +         +    W
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 378 EAGEITKLDLSRNSIQELPP------ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431
               +  L++   +I E           ++  SL    +         +A+ +  + ++ 
Sbjct: 275 PR-PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAP 490
             L  +    +             L+ + N+ +       S+L  LQ L L+   L+   
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 491 TDILRLQQLRILDLSQNSLQSIPEG--------------------------FKNLT-SLT 523
              L  + +  L+    SL S+                             F+ L   + 
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVK 453

Query: 524 ELDLSDNNISALP 536
            LDL +N I ++P
Sbjct: 454 VLDLHNNRIMSIP 466

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.9 bits (228), Expect = 8e-20
 Identities = 60/343 (17%), Positives = 107/343 (31%), Gaps = 42/343 (12%)

Query: 211 RLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            L L QN I  +    IS    L    + +N + +L   +      L  LD+  N+L+  
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN- 114

Query: 269 CVEACQL-RLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR-SSLVNGPTPA 324
            +  C +  L  LDLS N    LP   E G +T L  L L+    R L    + +     
Sbjct: 115 -ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC 173

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           +L  L S   +  ++E+    +   T    L      L    +N+S       +   I  
Sbjct: 174 ILLDLVSYHIKGGETESL---QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQ 441
            D +   +     EL+   +L  + L   +                 +  L + N  + +
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 442 VPSDGFKD-----IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRL 496
                        +  L I  +   +    +   +S    +                   
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN------------------ 332

Query: 497 QQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538
               I  LS +    I      + +S T L+ + N  +    +
Sbjct: 333 ----IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 77.6 bits (191), Expect = 3e-15
 Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 29/158 (18%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           + +D S  ++  +P +L      + L LS+N I +     ++ LS L  L+L +N +R +
Sbjct: 34  SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRIL 502
               F     L+ LD+S+N                       +L+        +  LR L
Sbjct: 92  DFHVFLFNQDLEYLDVSHN-----------------------RLQNISCC--PMASLRHL 126

Query: 503 DLSQNSLQSIPEG--FKNLTSLTELDLSDNNISALPPE 538
           DLS N    +P    F NLT LT L LS      L   
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 16/125 (12%)

Query: 422 ILTSLSSLSC-----LKLDNNPLRQVPSDGFKDIP-MLQILDLSYN-IASLPENPPFSSL 474
           I+ S++  S      +   N  L  VP D    +P   + L LS N I+ L      S L
Sbjct: 21  IVGSMTPFSNELESMVDYSNRNLTHVPKD----LPPRTKALSLSQNSISELRMPD-ISFL 75

Query: 475 PHLQELYLRM-QLREAPTDI-LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 532
             L+ L L   ++R     + L  Q L  LD+S N LQ+I      + SL  LDLS N+ 
Sbjct: 76  SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDLSFNDF 133

Query: 533 SALPP 537
             LP 
Sbjct: 134 DVLPV 138

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  130 bits (329), Expect = 4e-33
 Identities = 57/275 (20%), Positives = 100/275 (36%), Gaps = 45/275 (16%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  + S +  +   LS +P  I   +  R L L  N ++ +++          L +L   
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRH-----LHHLE-- 102

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNS 391
                                        L L   ++  I          +  L+L  N 
Sbjct: 103 ----------------------------VLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKD 449
           +  +P       + L+ L L  N I+  P      + SL  L L +   L  +    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQN 507
           +  L+ L+L     ++ + P  + L  L+EL +      E        L  L+ L +  +
Sbjct: 195 LFNLKYLNLGMC--NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 508 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELVS 541
            +  I    F  L SL EL+L+ NN+S+LP +L +
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (294), Expect = 2e-28
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  I    +     +  N +  + A+    L  L  L L  N +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 266 KEYCVEA-CQL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           ++  V A   L  L+ L+L +N L+ +P      ++ LR+L L  NP+ ++ S   N   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR-- 169

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  L                                L L  +  L  I    +E   
Sbjct: 170 ---VPSLM------------------------------RLDLGELKKLEYISEGAFEGLF 196

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L   +I+++P  L+    L+ L +S N   +        LSSL  L + N+ + 
Sbjct: 197 NLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F  +  L  L+L++N ++SLP +  F+ L +L EL+L 
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 5e-25
 Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 36/271 (13%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
                +  + R L +VP  +  N                + L L  NNI+ ++ D  R+L
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSN---------------TRYLNLMENNIQMIQADTFRHL 98

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             L VL +  N + ++   A   L  L +L++  N +  IP       + L +    +N 
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSN 177
           ++ +PS       SL   L+L +       +  + E        +  L++    +  + N
Sbjct: 159 IESIPSYAFNRVPSL-MRLDLGE----LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEF 235
             +     L EL  S N    +   +   LS L +L +  +++  I   +  G  SL E 
Sbjct: 214 --LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            + +N LS+LP +    L  L  L LH N  
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.9 bits (244), Expect = 5e-22
 Identities = 54/302 (17%), Positives = 98/302 (32%), Gaps = 66/302 (21%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETI 203
           +   ++ +P+ +   S    L++  N + ++  +       L  L   +N +        
Sbjct: 62  TRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDL- 260
             L+ L  L+L  N +  IPS        L E ++ NN + ++P+    ++  L  LDL 
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L+               +S  +  GL         L+ L L    ++ +       
Sbjct: 180 ELKKLEY--------------ISEGAFEGLF-------NLKYLNLGMCNIKDM------- 211

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEA 379
           P    L  L                               EL + G +   I        
Sbjct: 212 PNLTPLVGLE------------------------------ELEMSGNHFPEIRPGSFHGL 241

Query: 380 GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             + KL +  + +  +        ASL  L L+ N +   P  + T L  L  L L +NP
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 439 LR 440
             
Sbjct: 302 WN 303

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  126 bits (318), Expect = 1e-32
 Identities = 55/277 (19%), Positives = 103/277 (37%), Gaps = 41/277 (14%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +  ++  L+ +P  I   ++  +L L  N L++L   + +  T   L  
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT--QLTK 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L   L  N            ++                 +     S       +  LDLS
Sbjct: 57  L--SLSSNG-----------LSF----------KGCCSQSDFGTTS-------LKYLDLS 86

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N +  +         L+ L    + +K     ++  SL +L  L + +   R   +  F
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 448 KDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQLRILD 503
             +  L++L ++ N    +   +  F+ L +L  L L + QL +        L  L++L+
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 504 LSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 539
           +S N+  S+    +K L SL  LD S N+I     + 
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (283), Expect = 7e-28
 Identities = 57/282 (20%), Positives = 99/282 (35%), Gaps = 45/282 (15%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYC 269
            +  +   + S+P+ I    S     + +N L +LP     KL++L  L L SN L    
Sbjct: 11  EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
             +        L  LDLS N +  +      +  L  L    + L+ +          ++
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-------SEFSV 121

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITK 384
              LR+                       L      L +   +     + I+     +  
Sbjct: 122 FLSLRN-----------------------L----IYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 385 LDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           L ++ NS QE       +   +L  L LS+ +++        SLSSL  L + +N    +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  +K +  LQ+LD S N I +  +         L  L L 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  101 bits (254), Expect = 4e-24
 Identities = 57/307 (18%), Positives = 92/307 (29%), Gaps = 64/307 (20%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  +++ L  VP  +  +                 +L L  N ++ L       L  LT
Sbjct: 11  EIRCNSKGLTSVPTGIPSS---------------ATRLELESNKLQSLPHGVFDKLTQLT 55

Query: 72  VLNVSHNKLSELPAAIGE---LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
            L++S N LS              LK LD+SFN ++ +         L   D   + LK+
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
           +                                +  LD+      V  N +    + L  
Sbjct: 116 MSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 189 LIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           L  + N       P+    L  L  LDL Q ++  +  +  +   SL    M +N   +L
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
                  L+ L  LD   N +                     L   P      ++L  L 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMT--------------SKKQELQHFP------SSLAFLN 254

Query: 305 LTGNPLR 311
           LT N   
Sbjct: 255 LTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.4 bits (230), Expect = 6e-21
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+S  L  +P+ +      L L      +N + SLP       ++++KL +  N L+  
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLEL-----ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 176 SNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS--ISGCCS 231
                + +  T L  L  S N +  M      L +L  LD   + +  +          +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 232 LAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSL 287
           L    + +             LS L  L +  N  +E  +         L+ LDLS   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 288 SGLPPEI-GKMTTLRKLLLTGNPLRTL 313
             L P     +++L+ L ++ N   +L
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSL 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (317), Expect = 2e-32
 Identities = 52/263 (19%), Positives = 110/263 (41%), Gaps = 21/263 (7%)

Query: 63  DLRNLPLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVS-FNSIM-KIPDEIGSATALV 117
                  +  L++S   L     +P+++  L  L  L +   N+++  IP  I   T L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 118 KFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLT-V 174
               +   +   +P  L +   L     S N ++ +LP  ++    +  +  +GN+++  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 175 LSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSL 232
           + ++  +   + T +  S+N L G +P T  +L+ L  +DL +N +            + 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 233 AEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNS 286
            + ++  N+L+  L  ++G    L  LDL +N++     +   +   +  L  L++S N+
Sbjct: 224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKF-LHSLNVSFNN 279

Query: 287 LSGLPPEIGKMTTLRKLLLTGNP 309
           L G  P+ G +          N 
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (262), Expect = 5e-25
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 42/269 (15%)

Query: 59  KLKEDLRNLPLL----TVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI---MKIPDEI 110
           ++K+DL N   L       +  +      L     + + + +LD+S  ++     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 111 GSATALVKFDCSS-NQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDV 167
            +   L        N L   +P ++ +   L     ++  ++ ++P+ L+    +  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 168 EGNKLT--VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIR-LDLHQNRIL-SI 222
             N L+  +  +  I+S   L  +    N ++G +P++ GS S+L   + + +NR+   I
Sbjct: 133 SYNALSGTLPPS--ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 223 PSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281
           P +     +LA   +  N L        G                             + 
Sbjct: 191 PPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNT----------------------QKIH 227

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L+ NSL+    ++G    L  L L  N +
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 95.7 bits (239), Expect = 5e-22
 Identities = 62/269 (23%), Positives = 104/269 (38%), Gaps = 49/269 (18%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G            GP P  +  L   
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-------GPIPPAIAKL--- 100

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNS 391
                               T+L      L +   N+S AIP  + +   +  LD S N+
Sbjct: 101 --------------------TQLHY----LYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 392 IQ-ELPPELSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLR-QVPSDGFK 448
           +   LPP +SS  +L  +    N+I    PD+  +     + + +  N L  ++P     
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 449 DIPMLQILDLSYNIAS--LPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLS 505
               L  +DLS N+          F S  + Q+++L    L      +   + L  LDL 
Sbjct: 197 L--NLAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 506 QNSLQ-SIPEGFKNLTSLTELDLSDNNIS 533
            N +  ++P+G   L  L  L++S NN+ 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 39/194 (20%), Positives = 80/194 (41%), Gaps = 18/194 (9%)

Query: 361 ELSLEGMNLS---AIPSEIWEAGEITKLDLS-RNSIQ-ELPPELSSCASLQTLILSRNKI 415
            L L G+NL     IPS +     +  L +   N++   +PP ++    L  L ++   +
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 416 K-DWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN--IASLPENPPF 471
               PD + + + +L  L    N L   +P      +P L  +    N    ++P++  +
Sbjct: 114 SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDS--Y 169

Query: 472 SSLPHL-QELYLRM-QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDL 527
            S   L   + +   +L  + P     L  L  +DLS+N L+      F +  +  ++ L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 528 SDNNISALPPELVS 541
           + N+++    ++  
Sbjct: 229 AKNSLAFDLGKVGL 242

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  125 bits (317), Expect = 2e-32
 Identities = 58/277 (20%), Positives = 103/277 (37%), Gaps = 27/277 (9%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++   T L  L L  N +  ++           LK 
Sbjct: 25  CPFRCQCHLRVVQCSDLGLEKVPKDLPPDTAL--LDLQNNKITEIKDGDFKN-----LKN 77

Query: 329 LRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L +  L  N+ S+ S           +L    + L L    L  +P ++ +   + +L +
Sbjct: 78  LHTLILINNKISKIS---PGAFAPLVKL----ERLYLSKNQLKELPEKMPKT--LQELRV 128

Query: 388 SRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLSCLKLDNNPLRQVPS 444
             N I ++     +    +  + L  N +K     +     +  LS +++ +  +  +P 
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQLRI 501
                   L  L L  N I  +        L +L +L L    +       L     LR 
Sbjct: 189 GLPPS---LTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           L L+ N L  +P G  +   +  + L +NNISA+   
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  125 bits (315), Expect = 4e-32
 Identities = 61/323 (18%), Positives = 120/323 (37%), Gaps = 64/323 (19%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNN 285
           C L      +  L  +P +L        LDL +N++ E  ++         L  L L NN
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINN 86

Query: 286 SLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +S + P     +  L +L L+ N L+ L           + K L+              
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELP--------EKMPKTLQ-------------- 124

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE---LS 400
                           EL +    ++ +   ++    ++  ++L  N ++    E     
Sbjct: 125 ----------------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 461 N-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--- 515
           N I+++      ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I      
Sbjct: 226 NSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 516 ----FKNLTSLTELDLSDNNISA 534
                    S + + L  N +  
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  125 bits (315), Expect = 5e-32
 Identities = 66/337 (19%), Positives = 123/337 (36%), Gaps = 61/337 (18%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +      +  +P  +      A   + NN ++ +       L  L TL L +N++ +   
Sbjct: 36  VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
            A    ++L  L LS N L  LP ++    TL++L +  N +  +R S+ NG     L  
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNG-----LNQ 146

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWEA-GEITKL 385
           +                                + L    L  S I +  ++   +++ +
Sbjct: 147 MI------------------------------VVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            ++  +I  +P  L    SL  L L  NKI     A L  L++L+ L L  N +  V + 
Sbjct: 177 RIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR-MQLRE-------APTDILRL 496
              + P L+ L L+ N +  +P     +   ++Q +YL    +          P    + 
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 497 QQLRILDLSQNSLQ--SIPEG-FKNLTSLTELDLSDN 530
                + L  N +Q   I    F+ +     + L + 
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 1e-28
 Identities = 60/315 (19%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L  VP ++                 D   L L +N I ++K+   +NL  L 
Sbjct: 35  VVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLH 79

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N + ++P+       L +     N++ ++ 
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVR 137

Query: 131 S-SLGRCLNLSDFKASNNCITSL---PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
                    +   +   N + S            K+S + +    +T +   L  S   L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---L 194

Query: 187 TELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA 244
           TEL    N +  +   ++  L+ L +L L  N I ++ + S++    L E ++ NN L  
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

Query: 245 LPAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSL--SGLPPEI 294
           +P  L     +  + LH+N +                +   S + L +N +    + P  
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 295 -GKMTTLRKLLLTGN 308
              +     + L   
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 3e-25
 Identities = 65/382 (17%), Positives = 123/382 (32%), Gaps = 99/382 (25%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L ++P  +        LD+  N I +I                       
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIK---------------------- 68

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   NL      NN I+ +     A   K+ +L +  N+L  L   +  +   L E
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQE 125

Query: 189 LIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI---PSSISGCCSLAEFYMGNNALSA 244
           L   +N +  + +++   L+++I ++L  N + S      +  G   L+   + +  ++ 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +P  L     L  L L  N++ +              +   SL GL         L KL 
Sbjct: 186 IPQGL--PPSLTELHLDGNKITK--------------VDAASLKGLN-------NLAKLG 222

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L+ N +  + +  +         +LR                              EL L
Sbjct: 223 LSFNSISAVDNGSLAN-----TPHLR------------------------------ELHL 247

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
               L  +P  + +   I  + L  N+I  +           +  AS   + L  N ++ 
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    +    +   + ++L N 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 31/117 (26%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L  + C    +  L +VP D   D     +LDL  N I  + +   F +L +L  L   
Sbjct: 32  HLRVVQC---SDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGD-FKNLKNLHTL--- 81

Query: 484 MQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 539
                               L  N +  I  G F  L  L  L LS N +  LP ++
Sbjct: 82  -------------------ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  124 bits (314), Expect = 3e-32
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 355 LSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
           +   S+ + L G  +S +P+        +T L L  N +  +     +  A L+ L LS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 413 N-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
           N +++    A    L  L  L LD   L+++    F+ +  LQ L L  N + +LP++  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT- 148

Query: 471 FSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDL 527
           F  L +L  L+L   ++   P    R L  L  L L QN +  +    F++L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 528 SDNNISALPPEL 539
             NN+SALP E 
Sbjct: 209 FANNLSALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  117 bits (295), Expect = 8e-30
 Identities = 59/258 (22%), Positives = 99/258 (38%), Gaps = 45/258 (17%)

Query: 280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 339
                  L  +P  I      +++ L GN +  + ++          + L          
Sbjct: 16  TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRA-----CRNLT--------- 59

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS-IQELPP 397
                                 L L    L+ I +  +     + +LDLS N+ ++ + P
Sbjct: 60  ---------------------ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 398 E-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
                   L TL L R  +++    +   L++L  L L +N L+ +P D F+D+  L  L
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158

Query: 457 DLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQLRILDLSQNSLQSIP 513
            L  N I+S+PE   F  L  L  L L + ++        R L +L  L L  N+L ++P
Sbjct: 159 FLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 514 EG-FKNLTSLTELDLSDN 530
                 L +L  L L+DN
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  115 bits (289), Expect = 5e-29
 Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
                 +  +Q +P  +   A+ Q + L  N+I   P A   +  +L+ L L +N L ++
Sbjct: 14  VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 443 PSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQ 498
            +  F  + +L+ LDLS N  + S+     F  L  L  L+L    L+E    + R L  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPA-TFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 499 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
           L+ L L  N+LQ++P+  F++L +LT L L  N IS++P 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  101 bits (253), Expect = 4e-24
 Identities = 59/241 (24%), Positives = 86/241 (35%), Gaps = 43/241 (17%)

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
              + L  N +S +P         L  L L  N L  + ++   G     L  L      
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-----LALLE----- 83

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEG-MNLSAIPSEIWEA-GEITKLDLSRNSIQ 393
                                    +L L     L ++    +   G +  L L R  +Q
Sbjct: 84  -------------------------QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 394 ELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
           EL P      A+LQ L L  N ++  PD     L +L+ L L  N +  VP   F+ +  
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSL 509
           L  L L  N +A +  +  F  L  L  LYL    L   PT+ L  L+ L+ L L+ N  
Sbjct: 179 LDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 510 Q 510
            
Sbjct: 238 V 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (250), Expect = 1e-23
 Identities = 60/277 (21%), Positives = 95/277 (34%), Gaps = 64/277 (23%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
               Q  + ++P  I    +    ++  N +S +PA        L  L LHSN L     
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--- 70

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYL 329
                      +   + +GL         L +L L+ N  LR++  +  +G     L  L
Sbjct: 71  -----------IDAAAFTGLA-------LLEQLDLSDNAQLRSVDPATFHG-----LGRL 107

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L L+   L  +   ++     +  L L 
Sbjct: 108 H------------------------------TLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N++Q LP +      +L  L L  N+I   P+     L SL  L L  N +  V    F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           +D+  L  L L  N +++LP     + L  LQ L L 
Sbjct: 198 RDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 59/264 (22%), Positives = 91/264 (34%), Gaps = 44/264 (16%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
               + +   + L+ VP  +                   Q++ L  N I  +     R  
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRAC 55

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
             LT+L +  N L+ + A A   L +L+ LD+S N                       QL
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN----------------------AQL 93

Query: 127 KELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + +  +       L         +  L        + +  L ++ N L  L ++      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 185 MLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNAL 242
            LT L    N ++ +PE     L  L RL LHQNR+  +          L   Y+  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 243 SALPAE-LGKLSKLGTLDLHSNQL 265
           SALP E L  L  L  L L+ N  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 9e-21
 Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 14/204 (6%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
            C    L+ +P  +             N I+ +P      C  ++ L +  N L  +   
Sbjct: 17  SCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEF 235
                 +L +L  S N       P T   L RL  L L +  +  +   +  G  +L   
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGL 290
           Y+ +NAL ALP +    L  L  L LH N++    V     R    L  L L  N ++ +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 291 PPEI-GKMTTLRKLLLTGNPLRTL 313
            P     +  L  L L  N L  L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 54/255 (21%), Positives = 86/255 (33%), Gaps = 52/255 (20%)

Query: 65  RNLPL-LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
             +P     + +  N++S +PA +      L  L +  N + +I            F   
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--------FT-- 77

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIA 181
              L  L       L+LSD    N  + S+         ++  L ++   L  L      
Sbjct: 78  --GLALL-----EQLDLSD----NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----- 121

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNN 240
                             P     L+ L  L L  N + ++P        +L   ++  N
Sbjct: 122 ------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GK 296
            +S++P      L  L  L LH N++      A     RL  L L  N+LS LP E    
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 297 MTTLRKLLLTGNPLR 311
           +  L+ L L  NP  
Sbjct: 224 LRALQYLRLNDNPWV 238

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  127 bits (321), Expect = 3e-32
 Identities = 61/275 (22%), Positives = 103/275 (37%), Gaps = 45/275 (16%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  + S +     +L  +P  I   T  R L L  N ++ ++ +         L++L   
Sbjct: 41  CSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKH-----LRHLE-- 91

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNS 391
                                        L L   ++  I          +  L+L  N 
Sbjct: 92  ----------------------------ILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKD 449
           +  +P       + L+ L L  N I+  P      + SL  L L +   L  +    F+ 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQN 507
           +  L+ L+L+    +L E P  + L  L EL L    L        + L  L+ L + Q+
Sbjct: 184 LSNLRYLNLAMC--NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 508 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELVS 541
            +Q I    F NL SL E++L+ NN++ LP +L +
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  115 bits (290), Expect = 6e-28
 Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  IS   +     +  N +  +       L  L  L L  N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 266 KEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +   + A      L+ L+L +N L+ +P      ++ L++L L  NP+ ++ S   N   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-- 158

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  LR                               L L  +  LS I    +E   
Sbjct: 159 ---IPSLR------------------------------RLDLGELKRLSYISEGAFEGLS 185

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L+  +++E+P  L+    L  L LS N +          L  L  L +  + ++
Sbjct: 186 NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F ++  L  ++L++N +  LP +  F+ L HL+ ++L 
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (266), Expect = 7e-25
 Identities = 56/306 (18%), Positives = 112/306 (36%), Gaps = 67/306 (21%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +    ++LR+VP+ +               + + + L L  N I+ +K    ++L  L 
Sbjct: 47  KVICVRKNLREVPDGI---------------STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           +L +S N +  +   A   L  L +L++  N +  IP+      + L +    +N ++ +
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTE 188
           PS                              + +LD+ E  +L+ +S       + L  
Sbjct: 152 PSYA----------------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           L  +   L  +P  +  L +L  LDL  N + +I                          
Sbjct: 190 LNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS---------------------- 226

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLL 305
              L  L  L +  +Q++     A      L  ++L++N+L+ LP ++   +  L ++ L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 306 TGNPLR 311
             NP  
Sbjct: 287 HHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 8e-22
 Identities = 61/302 (20%), Positives = 106/302 (35%), Gaps = 66/302 (21%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI 203
               +  +P+ ++  +    L++  N++ ++  N       L  L  S+N +  +     
Sbjct: 51  VRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDL- 260
             L+ L  L+L  NR+ +IP+        L E ++ NN + ++P+    ++  L  LDL 
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L                +S  +  GL         LR L L    LR +       
Sbjct: 169 ELKRLSY--------------ISEGAFEGLS-------NLRYLNLAMCNLREI------- 200

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEA 379
           P    L  L                               EL L G +LSAI        
Sbjct: 201 PNLTPLIKLD------------------------------ELDLSGNHLSAIRPGSFQGL 230

Query: 380 GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             + KL + ++ IQ +      +  SL  + L+ N +   P  + T L  L  + L +NP
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290

Query: 439 LR 440
             
Sbjct: 291 WN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 4e-21
 Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
            C    L+E+P  +    R LNL       N I  +          +  L +  N +  +
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNL-----HENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 176 SNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    LS +       LS L  L+L    L+E       ++L  LDLS N LS + 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223

Query: 292 PEI-GKMTTLRKLLLTGNPLRTL 313
           P     +  L+KL +  + ++ +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVI 246

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  123 bits (312), Expect = 1e-31
 Identities = 66/333 (19%), Positives = 114/333 (34%), Gaps = 65/333 (19%)

Query: 207 SRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQ 264
                LDL  N I  +      G   L    + NN +S +  +    L KL  L +  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 265 LKEYCVEACQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           L E  +       L  L + +N +  +P  +   +  +  + + GNPL            
Sbjct: 114 LVE--IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL------------ 159

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI 382
                                 +           +    L +    L+ IP ++ E   +
Sbjct: 160 ----------------------ENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET--L 195

Query: 383 TKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
            +L L  N IQ +  E L   + L  L L  N+I+   +  L+ L +L  L LDNN L +
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLR 500
           VP+ G  D+ +LQ++ L  N I  +  N  F  +                   ++     
Sbjct: 256 VPA-GLPDLKLLQVVYLHTNNITKVGVND-FCPVGFG----------------VKRAYYN 297

Query: 501 ILDLSQNSLQ--SIPEG-FKNLTSLTELDLSDN 530
            + L  N +    +    F+ +T    +   + 
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  123 bits (310), Expect = 2e-31
 Identities = 66/291 (22%), Positives = 112/291 (38%), Gaps = 31/291 (10%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           L +L    + +   C   C   L V+  S+  L  +P EI        L L  N +  LR
Sbjct: 16  LDSLPPTYSAM---CPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELR 70

Query: 315 SSLVNGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
                G     L++L +  L  N+    S   E   +   +L    ++L +   +L  IP
Sbjct: 71  KDDFKG-----LQHLYALVLVNNK---ISKIHEKAFSPLRKL----QKLYISKNHLVEIP 118

Query: 374 SEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLS 430
             +  +  + +L +  N I+++P    S   ++  + +  N +++          L  L+
Sbjct: 119 PNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LN 175

Query: 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLRE 488
            L++    L  +P D  +    L  L L +N I ++           L  L L   Q+R 
Sbjct: 176 YLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRM 231

Query: 489 APTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
                L  L  LR L L  N L  +P G  +L  L  + L  NNI+ +   
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  121 bits (306), Expect = 7e-31
 Identities = 57/331 (17%), Positives = 119/331 (35%), Gaps = 55/331 (16%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI 203
           S+  + ++P++++     + LD++ N ++ L  +       L  L+   N ++ + E   
Sbjct: 41  SDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
             L +L +L + +N ++ IP ++    SL E  + +N +  +P      L  +  +++  
Sbjct: 99  SPLRKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

Query: 263 NQLKEYCVEA---CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319
           N L+    E      L+L+ L +S   L+G+P ++    TL +L L  N ++ +    + 
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLL 214

Query: 320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA 379
                    L                                L L    +  I +     
Sbjct: 215 R-----YSKLY------------------------------RLGLGHNQIRMIENGSLSF 239

Query: 380 -GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD------AILTSLSSLSCL 432
              + +L L  N +  +P  L     LQ + L  N I                 +  + +
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 433 KLDNNPL--RQVPSDGFKDIPMLQILDLSYN 461
            L NNP+   +V    F+ +     +     
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  120 bits (303), Expect = 2e-30
 Identities = 62/325 (19%), Positives = 113/325 (34%), Gaps = 64/325 (19%)

Query: 227 SGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLD 281
            GC C L      +  L A+P E+        LDL +N + E  +          L  L 
Sbjct: 29  FGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISE--LRKDDFKGLQHLYALV 84

Query: 282 LSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340
           L NN +S +  +    +  L+KL ++ N L  +         P L   L           
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP--------PNLPSSLV---------- 126

Query: 341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE--LPP 397
                               EL +    +  +P  ++     +  +++  N ++     P
Sbjct: 127 --------------------ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166

Query: 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
                  L  L +S  K+   P  +  +L+ L    LD+N ++ +  +       L  L 
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIELEDLLRYSKLYRLG 223

Query: 458 LSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 515
           L +N I  +      S LP L+EL+L   +L   P  +  L+ L+++ L  N++  +   
Sbjct: 224 LGHNQIRMIENGS-LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 516 -------FKNLTSLTELDLSDNNIS 533
                           + L +N + 
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (289), Expect = 2e-28
 Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 35/291 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L+ VP E+               + D   L L +N+I +L++D  + L  L 
Sbjct: 37  VVQCSDLGLKAVPKEI---------------SPDTTLLDLQNNDISELRKDDFKGLQHLY 81

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N +++IP      ++LV+     N+++++P
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVP 139

Query: 131 -SSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                   N++  +   N + +        D  K++ L +   KLT +  +L  +   L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LN 196

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           EL    N +  +    +   S+L RL L  N+I  I +   S   +L E ++ NN LS +
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256

Query: 246 PAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSLS 288
           PA L  L  L  + LH+N + +              +   + + L NN + 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 59/303 (19%), Positives = 105/303 (34%), Gaps = 60/303 (19%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L+L N  + ++  + +K                L  L+L +N I K+ E     L  L 
Sbjct: 58  LLDLQNNDISELRKDDFKGLQ------------HLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            L +S N L E+P  +     L  L +  N I K+P  +      +   +   N L+   
Sbjct: 106 KLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 131 SSLG--RCLNLSDFKASNNCITSLPEDL----------------------ADCSKMSKLD 166
              G    L L+  + S   +T +P+DL                         SK+ +L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  N++ ++ N  ++    L EL    N L+ +P  +  L  L  + LH N I  +    
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG--- 280

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDL 282
                        N    +   + K +    + L +N +  + V+     C      +  
Sbjct: 281 ------------VNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 283 SNN 285
            N 
Sbjct: 328 GNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 70/382 (18%), Positives = 120/382 (31%), Gaps = 100/382 (26%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L  +P  I        LD+  N I ++                       
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELR---------------------- 70

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   +L      NN I+ + E   +   K+ KL +  N L  +  NL         
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--------- 121

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPA 247
                             S L+ L +H NRI  +P  + SG  ++    MG N L     
Sbjct: 122 -----------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 248 ELGKLS--KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLL 304
           E G     KL  L +   +L     +  +  L+ L L +N +  +  E   + + L +L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPE-TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N +R + +  ++      L  LR                              EL L
Sbjct: 224 LGHNQIRMIENGSLSF-----LPTLR------------------------------ELHL 248

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
           +   LS +P+ + +   +  + L  N+I ++              A    + L  N +  
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    A    ++    ++  N 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 31/117 (26%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L  + C    +  L+ VP +   D     +LDL  N I+ L ++  F  L HL  L   
Sbjct: 34  HLRVVQC---SDLGLKAVPKEISPDT---TLLDLQNNDISELRKDD-FKGLQHLYAL--- 83

Query: 484 MQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 539
                               L  N +  I E  F  L  L +L +S N++  +PP L
Sbjct: 84  -------------------VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL 121

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  121 bits (306), Expect = 3e-31
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 11/183 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
            E++ +  NL+A+P ++    + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
              +  +L  L  L L +N L+ +P    + +P L +LD+S+N + SLP       L  L
Sbjct: 71  Q--VDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGA-LRGLGEL 126

Query: 478 QELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 534
           QELYL+  +L+  P  +L    +L  L L+ N+L  +P G    L +L  L L +N++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 535 LPP 537
           +P 
Sbjct: 187 IPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  112 bits (281), Expect = 8e-28
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 10/161 (6%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
            +++  + ++  LPP+L        L LS N +  +  A L   + L+ L LD   L ++
Sbjct: 13  LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQL 499
                  +P+L  LDLS+N + SLP      +LP L  L +   +L   P   L  L +L
Sbjct: 71  QV--DGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 539
           + L L  N L+++P G       L +L L++NN++ LP  L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  101 bits (254), Expect = 3e-24
 Identities = 56/263 (21%), Positives = 89/263 (33%), Gaps = 62/263 (23%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C  +       ++    +L+ LPP++        L L+ N L T   + +          
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMP-----YTR 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L                               +L+L+   L+ +  +      +  LDLS
Sbjct: 57  LT------------------------------QLNLDRAELTKLQVD-GTLPVLGTLDLS 85

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +Q LP    +  +L  L +S N++   P   L  L  L  L L  N L+ +P     
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 449 DIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQN 507
             P L+ L L+ N +  LP     + L +L  L                       L +N
Sbjct: 146 PTPKLEKLSLANNNLTELPAG-LLNGLENLDTLL----------------------LQEN 182

Query: 508 SLQSIPEGFKNLTSLTELDLSDN 530
           SL +IP+GF     L    L  N
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 93.2 bits (232), Expect = 3e-21
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 9/195 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
           +C    L  LP  L +  + +    S N + +     L   +++++L+++  +LT L   
Sbjct: 16  NCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-- 71

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYM 237
           +  +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P     G   L E Y+
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 238 GNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI 294
             N L  LP  L     KL  L L +N L E           L  L L  NSL  +P   
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 295 GKMTTLRKLLLTGNP 309
                L    L GNP
Sbjct: 192 FGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 41/230 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           ++  +  + ++P  +         ++  N L       L   ++L  L+L   +L +  V
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +     L  LDLS+N L  LP     +  L  L ++ N L +L    + G    L     
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-EL----- 126

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSR 389
                                        +EL L+G  L  +P  +     ++ KL L+ 
Sbjct: 127 -----------------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           N++ ELP  L +   +L TL+L  N +   P     S   L    L  NP
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.4 bits (209), Expect = 2e-18
 Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +N   R+L  +P ++                 D   L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +L++L    G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L  L +     N + +LP  L     K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.8 bits (205), Expect = 8e-18
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 6/202 (2%)

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSS 123
             +     +N     L+ LP  +        L +S N +           T L + +   
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
            +L +L    G    L     S+N + SLP        ++ LDV  N+LT L    +   
Sbjct: 65  AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNA 241
             L EL    N L  +P  +     +L +L L  N +  +P+ + +G  +L    +  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 242 LSALPAELGKLSKLGTLDLHSN 263
           L  +P        L    LH N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 10/117 (8%)

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELY 481
           + S   ++C   D   L  +P D  KD     IL LS N + +            L +L 
Sbjct: 9   VASHLEVNC---DKRNLTALPPDLPKD---TTILHLSENLLYTFSLAT-LMPYTRLTQLN 61

Query: 482 LRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           L   +L +   D   L  L  LDLS N LQS+P   + L +LT LD+S N +++LP 
Sbjct: 62  LDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.2 bits (198), Expect = 8e-17
 Identities = 58/241 (24%), Positives = 87/241 (36%), Gaps = 44/241 (18%)

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDL 282
            +S   S  E       L+ALP +L        L L  N L            RL+ L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
               L+ L  + G +  L  L L+ N L++L         P L + L             
Sbjct: 63  DRAELTKLQVD-GTLPVLGTLDLSHNQLQSL---------PLLGQTL------------- 99

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-S 400
                       L      L +    L+++P       GE+ +L L  N ++ LPP L +
Sbjct: 100 ----------PAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L+ L L+ N + + P  +L  L +L  L L  N L  +P   F    +L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHG 204

Query: 461 N 461
           N
Sbjct: 205 N 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  125 bits (316), Expect = 6e-31
 Identities = 68/344 (19%), Positives = 110/344 (31%), Gaps = 37/344 (10%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEA-------------VDLQKLILAHN 55
             S S N    ++     + +  +D+  +     E                  +L L   
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
           N+  L ++L   P +TVL ++ N L  LP        L+ LD   N +  +P+   S   
Sbjct: 70  NLSSLPDNL--PPQITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPELPAS--- 121

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L   D  +NQL  LP        L    A NN +T LPE     + +  L V  N+LT L
Sbjct: 122 LKHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELP---TSLEVLSVRNNQLTFL 175

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRL----IRLDLHQNRILSIPSSISGCCS 231
                     L  L  S NLL  +P             I     +NRI  IP +I     
Sbjct: 176 PELP----ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDP 231

Query: 232 LAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
                + +N LS+     L + +                 +   L   + D         
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPEN 291

Query: 291 -PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              ++ ++    +     N        L +  +       R ++
Sbjct: 292 KQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  122 bits (307), Expect = 9e-30
 Identities = 60/377 (15%), Positives = 114/377 (30%), Gaps = 59/377 (15%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLDLHQNRILSIPSSIS 227
           N ++    +  ++W    +        N     +    +++   L L++  + S+P ++ 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL- 78

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSL 287
               +    +  NAL +LP     L  L   D   N+L         L+   LD+ NN L
Sbjct: 79  -PPQITVLEITQNALISLPELPASLEYL---DACDNRLSTLPELPASLK--HLDVDNNQL 132

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
           + LP        L  +    N L  L         P L   L                  
Sbjct: 133 TMLPELPAL---LEYINADNNQLTML---------PELPTSLE----------------- 163

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
                         LS+    L+ +P        +  LD+S N ++ LP         + 
Sbjct: 164 -------------VLSVRNNQLTFLPELP---ESLEALDVSTNLLESLPAVPVRNHHSEE 207

Query: 408 ----LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
                    N+I   P+ IL SL     + L++NPL     +                  
Sbjct: 208 TEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

Query: 464 SLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLT 523
           S+ +    +    L +           +D+ ++      +   N+  +  +   +  S  
Sbjct: 267 SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSAR 326

Query: 524 ELDLSDNNISALPPELV 540
                   ++A   +L 
Sbjct: 327 NTSGFREQVAAWLEKLS 343

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  111 bits (279), Expect = 3e-26
 Identities = 51/265 (19%), Positives = 89/265 (33%), Gaps = 41/265 (15%)

Query: 280 LDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-RLPENE 337
            +   N++SG   +         K  L G      R+  V+     L+      +L    
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGE----NRNEAVSLLKECLINQFSELQLNRL- 69

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP 397
                    +L ++   L      L +    L ++P        +  LD   N +  LP 
Sbjct: 70  ---------NLSSLPDNLPPQITVLEITQNALISLPELP---ASLEYLDACDNRLSTLPE 117

Query: 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
             +S   L+ L +  N++   P+      + L  +  DNN L  +P         L++L 
Sbjct: 118 LPAS---LKHLDVDNNQLTMLPELP----ALLEYINADNNQLTMLPEL----PTSLEVLS 166

Query: 458 LSYN-IASLPENPPFSSLPHLQELYLR-MQLREAPTDILRLQQLR----ILDLSQNSLQS 511
           +  N +  LPE         L+ L +    L   P   +R              +N +  
Sbjct: 167 VRNNQLTFLPE-----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH 221

Query: 512 IPEGFKNLTSLTELDLSDNNISALP 536
           IPE   +L     + L DN +S+  
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRI 246

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.2 bits (226), Expect = 1e-19
 Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 23/179 (12%)

Query: 368 NLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCA--SLQTLILSRNKIKDWPDAILT 424
            +S   ++ + A  +  K  L   +  E    L  C       L L+R  +   PD +  
Sbjct: 21  TISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPP 80

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            ++ L    +  N L  +P         L+ LD   N +++LPE         L+ L + 
Sbjct: 81  QITVLE---ITQNALISLPEL----PASLEYLDACDNRLSTLPE-----LPASLKHLDVD 128

Query: 484 M-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 541
             QL   P        L  ++   N L  +PE     TSL  L + +N ++ LP    S
Sbjct: 129 NNQLTMLPELP---ALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELPES 181

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.2 bits (195), Expect = 8e-16
 Identities = 42/269 (15%), Positives = 84/269 (31%), Gaps = 13/269 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ +   +N +  L E   +L    VL+V +N+L+ LP     L   ++LDVS N +  +
Sbjct: 142 LEYINADNNQLTMLPELPTSL---EVLSVRNNQLTFLPELPESL---EALDVSTNLLESL 195

Query: 107 PDEIGSATAL----VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
           P             + F C  N++  +P ++            +N ++S   +       
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
                       +S+    +         +          +  +      + H N   + 
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF 315

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKL-GTLDLHSNQLKEYCVEACQLRLSVLD 281
              +S   S          ++A   +L   ++L       +    E C +   L  +  +
Sbjct: 316 LDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWN--N 373

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L    L     E         LL  G  +
Sbjct: 374 LRKTLLVHQASEGLFDNDTGALLSLGREM 402

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.8 bits (160), Expect = 2e-11
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 8/118 (6%)

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY-NIASLPENPPFSSLPHLQELYL-R 483
             SLS     N  +    +D F      +   L   N            +    EL L R
Sbjct: 10  NFSLSQNSFYNT-ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 484 MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 541
           + L   P ++    Q+ +L+++QN+L S+PE      SL  LD  DN +S LP    S
Sbjct: 69  LNLSSLPDNLP--PQITVLEITQNALISLPE---LPASLEYLDACDNRLSTLPELPAS 121

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  116 bits (293), Expect = 1e-29
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 9/196 (4%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
             L  ++K L L    L  + S  + +  E+  LDLSR  IQ +      S + L TLIL
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + N I+       + LSSL  L      L  + +     +  L+ L++++N I S     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 470 PFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRI----LDLSQNSLQSIPEGFKNLTSLT 523
            FS+L +L+ L L   +++      L  L Q+ +    LDLS N +  I  G      L 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203

Query: 524 ELDLSDNNISALPPEL 539
           EL L  N + ++P  +
Sbjct: 204 ELALDTNQLKSVPDGI 219

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  109 bits (274), Expect = 5e-27
 Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 11/181 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + L L    +  I    +++   ++ L L+ N IQ L     S  +SLQ L+     +  
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLP 475
             +  +  L +L  L + +N ++       F ++  L+ LDLS N I S+        L 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLH 173

Query: 476 HLQELYLRM-----QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSD 529
            +  L L +      +        +  +L+ L L  N L+S+P+G F  LTSL ++ L  
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

Query: 530 N 530
           N
Sbjct: 234 N 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 49/240 (20%), Positives = 76/240 (31%), Gaps = 44/240 (18%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE- 267
            LDL  N +  + S        L    +    +  +       LS L TL L  N ++  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 268 -YCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
                +    L  L     +L+ L     G + TL++L +  N +++          P  
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEY 144

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----G 380
              L                       T L    + L L    + +I             
Sbjct: 145 FSNL-----------------------TNL----EHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
               LDLS N +  + P       L+ L L  N++K  PD I   L+SL  + L  NP  
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.9 bits (221), Expect = 6e-20
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
              + L L+ N +  L      + P L VL++S  ++  +   A   L  L +L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 103 IMKIPDEIGSA-TALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPED--LAD 158
           I  +     S  ++L K       L  L +   G    L +   ++N I S       ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
            + +  LD+  NK+  +    +     +  L                    + LDL  N 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------------------NLSLDLSLNP 188

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
           +  I         L E  +  N L ++P     +L+ L  + LH+N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C      ++P +L    + L+LS      N +  L         ++  LD+   ++  +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +       +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEAC------QLRLSVLDLSNN 285
           E  + +N + +         L+ L  LDL SN+++              L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
            ++ + P   K   L++L L  N L+++
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 79.6 bits (197), Expect = 8e-17
 Identities = 53/260 (20%), Positives = 85/260 (32%), Gaps = 53/260 (20%)

Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEAC 273
            +     IP ++    S     +  N L  L +       +L  LDL   +++     A 
Sbjct: 15  MELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 274 Q--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           Q    LS L L+ N +  L       +++L+KL+     L +L +  +            
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-------- 124

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA----GEITKLD 386
                                      T KEL++    + +      E       +  LD
Sbjct: 125 ---------------------------TLKELNVAHNLIQSFKLP--EYFSNLTNLEHLD 155

Query: 387 LSRNSIQELPPE-LSSCASLQ----TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           LS N IQ +    L     +     +L LS N +          +  L  L LD N L+ 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKS 214

Query: 442 VPSDGFKDIPMLQILDLSYN 461
           VP   F  +  LQ + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  116 bits (292), Expect = 2e-29
 Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 8/187 (4%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
           +     +      L+AIPS I    +  KLDL  N +  LP +       L+ L L+ NK
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           ++  P  I   L +L  L + +N L+ +P   F  +  L  L L  N + SLP    F S
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-FDS 131

Query: 474 LPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           L  L  L L   +L+  P  +  +L  L+ L L  N L+ +PEG F  LT L  L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

Query: 531 NISALPP 537
            +  +P 
Sbjct: 192 QLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  109 bits (275), Expect = 4e-27
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 7/184 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
           + +   +K+L L+   LS++PS+ +    ++  L L+ N +Q LP  +     +L+TL +
Sbjct: 33  SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + NK++  P  +   L +L+ L+LD N L+ +P   F  +  L  L L YN + SLP+  
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG- 151

Query: 470 PFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELD 526
            F  L  L+EL L   QL+  P     +L +L+ L L  N L+ +PEG F +L  L  L 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 527 LSDN 530
           L +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 90.0 bits (224), Expect = 2e-20
 Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 9/153 (5%)

Query: 390 NSIQELPPELSSCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            ++ +    + SC  +  ++  S  K+   P  I      L    L +N L  +PS  F 
Sbjct: 2   EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLD---LQSNKLSSLPSKAFH 58

Query: 449 DIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLS 505
            +  L++L L+ N + +LP    F  L +L+ L++   +L+  P  +  +L  L  L L 
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGI-FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117

Query: 506 QNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
           +N L+S+P   F +LT LT L L  N + +LP 
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 80.8 bits (200), Expect = 3e-17
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 21/214 (9%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
              S++ S++ L  +P+ +                 D +KL L  N +  L       L 
Sbjct: 17  NKNSVDCSSKKLTAIPSNI---------------PADTKKLDLQSNKLSSLPSKAFHRLT 61

Query: 69  LLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQL 126
            L +L ++ NKL  LPA I  EL  L++L V+ N +  +P  +      L +     NQL
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 127 KELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWT 184
           K LP  +   L  L+      N + SLP+ + D  + + +L +  N+L  +        T
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 185 MLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
            L  L    N L  +PE    SL +L  L L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
             S+D S   +  IP  I + T   K D  SN+L  LPS     L  L     ++N + +
Sbjct: 18  KNSVDCSSKKLTAIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 152 LPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRL 209
           LP  +      +  L V  NKL  L   +      L EL   +N L  +P  +  SL++L
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135

Query: 210 IRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
             L L  N + S+P  +     SL E  + NN L  +P     KL++L TL L +NQLK 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 268 YCVEACQ--LRLSVLDLSNN 285
               A     +L +L L  N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 43/232 (18%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
           D    ++ +IPS+I       +  + +N LS+LP++   +L+KL  L L+ N+L+     
Sbjct: 22  DCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 272 AC-QL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
              +L  L  L +++N L  LP  +  ++  L +L L  N L++L   + +  T  L   
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KL--- 135

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
                                            LSL    L ++P  +++    + +L L
Sbjct: 136 -------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRL 164

Query: 388 SRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             N ++ +P         L+TL L  N++K  P+    SL  L  L+L  NP
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  110 bits (277), Expect = 9e-27
 Identities = 68/331 (20%), Positives = 115/331 (34%), Gaps = 63/331 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
             SS  L  +PS L     +     SNN IT +   DL  C  +  L +  N +  +  +
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI--SGCCSLAEF 235
             +S   L  L  S N L+ +  +    LS L  L+L  N   ++  +   S    L   
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 236 YMGNNA-LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLP 291
            +GN    + +  +    L+ L  L++ ++ L+ Y  ++ +    +S L L       L 
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 292 PEI-GKMTTLRKLLLTGNPLRTLR-SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
                  +++  L L    L T   S L  G T +L+K                      
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF-------------------- 254

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409
                                              + ++  S+ ++   L+  + L  L 
Sbjct: 255 -------------------------------TFRNVKITDESLFQVMKLLNQISGLLELE 283

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            SRN++K  PD I   L+SL  + L  NP  
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  108 bits (271), Expect = 6e-26
 Identities = 60/352 (17%), Positives = 126/352 (35%), Gaps = 59/352 (16%)

Query: 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258
           MP T+  +  L  +        S  +S+S C         + +L+++P+ L     + +L
Sbjct: 1   MPHTLWMVWVLGVIISLSKEESSNQASLS-CDRNGICKGSSGSLNSIPSGL--TEAVKSL 57

Query: 259 DLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           DL +N++    +    L+    L  L L++N ++ +  +    + +L  L L+ N L  L
Sbjct: 58  DLSNNRITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
            SS         L  L                                L+L G     + 
Sbjct: 116 SSSWFKP-----LSSLT------------------------------FLNLLGNPYKTLG 140

Query: 374 SEIWEAG--EITKLDLSRN-SIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
                +   ++  L +    +  ++  +  +    L+ L +  + ++ +    L S+ ++
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN------IASLPENP--PFSSLPHLQELY 481
           S L L       +          ++ L+L          + L              + + 
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 482 L-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 531
           +    L +    + ++  L  L+ S+N L+S+P+G F  LTSL ++ L  N 
Sbjct: 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (260), Expect = 2e-24
 Identities = 62/347 (17%), Positives = 122/347 (35%), Gaps = 50/347 (14%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLP 68
            +G    S+ SL  +P+ +                  ++ L L++N I  +   DL+   
Sbjct: 32  RNGICKGSSGSLNSIPSGL---------------TEAVKSLDLSNNRITYISNSDLQRCV 76

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQL 126
            L  L ++ N ++ +   +   L  L+ LD+S+N +  +        ++L   +   N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 127 KELP--SSLGRCLNLSDFK-ASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           K L   S       L   +  + +  T +     A  + + +L+++ + L       + S
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 183 WTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
              ++ LI        + E      S +  L+L    + +                  + 
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF---------------SE 241

Query: 242 LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEI-GKMT 298
           LS      L K      + +    L +      Q+  L  L+ S N L  +P  I  ++T
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +L+K+ L  NP            +   + YL   L +N   E  + K
Sbjct: 302 SLQKIWLHTNPWDC---------SCPRIDYLSRWLNKNSQKEQGSAK 339

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.0 bits (234), Expect = 4e-21
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
             S  S+  +P  L+   ++++L LS N+I    ++ L    +L  L L +N +  +  D
Sbjct: 37  KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL--RLQQLRI 501
            F  +  L+ LDLSYN +++L  +  F  L  L  L L     +      L   L +L+I
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSS-WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 502 LDLSQN-SLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538
           L +    +   I    F  LT L EL++  +++ +  P+
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.9 bits (218), Expect = 4e-19
 Identities = 46/271 (16%), Positives = 78/271 (28%), Gaps = 63/271 (23%)

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
           +  LDLSNN ++ +      +   L+ L+LT N + T+     +      L  L      
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-----LGSL------ 102

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQE 394
                                   + L L    LS + S        +T L+L  N  + 
Sbjct: 103 ------------------------EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 395 LPPE--LSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP 451
           L      S    LQ L +                L+ L  L++D + L+       K I 
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510
            +  L L       L E         ++ L LR                   DL      
Sbjct: 199 NVSHLILHMKQHILLLEIF-VDVTSSVECLELR-----------------DTDLDTFHFS 240

Query: 511 SIPEG----FKNLTSLTELDLSDNNISALPP 537
            +  G         +   + ++D ++  +  
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  109 bits (275), Expect = 2e-26
 Identities = 49/190 (25%), Positives = 71/190 (37%), Gaps = 32/190 (16%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIK 416
           S  LS     L  +P  +        LDLS N++  L  E   +   +L +L+LS N + 
Sbjct: 20  SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                    + +L  L L +N L  +    F D+  L++L L  N I  +  N  F  + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMA 136

Query: 476 HLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDNN 531
            LQ+LYL                      SQN +   P         L  L  LDLS N 
Sbjct: 137 QLQKLYL----------------------SQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 532 ISALPPELVS 541
           +  LP   + 
Sbjct: 175 LKKLPLTDLQ 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =   99 bits (249), Expect = 4e-23
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 26/183 (14%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
           L   +  L L   NLS + +E        +  L LS N +  +  E      +L+ L LS
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
            N +    + + + L +L  L L NN +  V  + F+D+  LQ L LS N I+  P    
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE-L 155

Query: 471 FSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS- 528
                                    L +L +LDLS N L+ +P    + L +  +  L  
Sbjct: 156 IKDGNK-------------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196

Query: 529 DNN 531
            NN
Sbjct: 197 HNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 56/284 (19%), Positives = 94/284 (33%), Gaps = 85/284 (29%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL--KEDLRNLPLL 70
            L+ S + L +VP    ++                  L L+HNN+ +L  +     L  L
Sbjct: 22  ILSCSKQQLPNVP----QSLP-----------SYTALLDLSHNNLSRLRAEWTPTRLTNL 66

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
             L +SHN L+ + + A   +  L+ LD+S N +  + + +                 +L
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL---------------FSDL 111

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                    L      NN I  +  +   D +++ KL +  N+++     LI        
Sbjct: 112 Q-------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN---- 160

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
                            L +L+ LDL  N++  +P                  L  LPA 
Sbjct: 161 ----------------KLPKLMLLDLSSNKLKKLPL---------------TDLQKLPA- 188

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
                    L LH+N L   C   C+L           LS +  
Sbjct: 189 ----WVKNGLYLHNNPL--EC--DCKLYQLFSHWQYRQLSSVMD 224

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 63/236 (26%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYC 269
           L   + ++ ++P S+      A   + +N LS L AE    +L+ L +L L  N L    
Sbjct: 23  LSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 270 VEA-CQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            EA   +  L  LDLS+N L  L   +   +  L  LLL  N +  +  +         +
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----M 135

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386
             L+                              +L L    +S  P E+ +        
Sbjct: 136 AQLQ------------------------------KLYLSQNQISRFPVELIKD------- 158

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLDNNPLR 440
                        +    L  L LS NK+K  P   L  L +     L L NNPL 
Sbjct: 159 ------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 8e-12
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 30/116 (25%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           + + LSC       L  VP           +LDLS+N ++ L      + L +L  L L 
Sbjct: 19  ASNILSC---SKQQLPNVPQSLPSYT---ALLDLSHNNLSRLRAEWTPTRLTNLHSLLL- 71

Query: 484 MQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538
                                S N L  I    F  + +L  LDLS N++  L   
Sbjct: 72  ---------------------SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  105 bits (265), Expect = 1e-25
 Identities = 49/248 (19%), Positives = 105/248 (42%), Gaps = 10/248 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K+    +N+        +L  +T L+     ++ +   +  L+ L  L++  N I  
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD 77

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   + + T + + + S N LK + S++    ++     ++  IT +   LA  S +  L
Sbjct: 78  LA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVL 134

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
            ++ N++T +S   +A  T L  L      ++ +   + +LS+L  L    N+I  I S 
Sbjct: 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI-SP 190

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           ++   +L E ++ NN +S +   L   S L  + L +  +    V      +    +   
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 286 SLSGLPPE 293
           S + + P 
Sbjct: 250 SGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.8 bits (249), Expect = 2e-23
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 33/260 (12%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           I     I  +      L     +    + +++      +L  + +L      +  I   +
Sbjct: 3   ITQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GV 59

Query: 111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
                L+  +   NQ+ +L + L     +++ + S N + ++   +A    +  LD+   
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST 117

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
           ++T ++                          +  LS L  L L  N+I +I S ++G  
Sbjct: 118 QITDVTP-------------------------LAGLSNLQVLYLDLNQITNI-SPLAGLT 151

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
           +L    +GN  +S L   L  LSKL TL    N++ +    A    L  + L NN +S +
Sbjct: 152 NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210

Query: 291 PPEIGKMTTLRKLLLTGNPL 310
            P +   + L  + LT   +
Sbjct: 211 SP-LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 9e-19
 Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 11/179 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            +++    N++       +   IT L      +  +   +    +L  L L  N+I D  
Sbjct: 22  IKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLA 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              L +L+ ++ L+L  NPL+ V       +  ++ LDL+     + +  P + L +LQ 
Sbjct: 80  P--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST--QITDVTPLAGLSNLQV 133

Query: 480 LYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           LYL   Q+      +  L  L+ L +    +  +     NL+ LT L   DN IS + P
Sbjct: 134 LYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 9e-19
 Identities = 39/180 (21%), Positives = 77/180 (42%), Gaps = 11/180 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             L L+   ++ + + +    +IT+L+LS N ++ +   ++   S++TL L+  +I D  
Sbjct: 66  IGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVT 123

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  LS+L  L LD N +  +       +  LQ L +    ++ L    P ++L  L 
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT---PLANLSKLT 176

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
            L          + +  L  L  + L  N +  +     N ++L  + L++  I+  P  
Sbjct: 177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVF 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 4e-17
 Identities = 53/310 (17%), Positives = 107/310 (34%), Gaps = 46/310 (14%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  I++   ++ +     + +    +         ++ +   +  L+ L  L+L  NQ
Sbjct: 17  ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           + +        +++ L+LS N L  +   I  + +++ L LT   +  + + L       
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAG----- 127

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
            L  L                              + L L+   ++ I S +     +  
Sbjct: 128 -LSNL------------------------------QVLYLDLNQITNI-SPLAGLTNLQY 155

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L +    + +L P L++ + L TL    NKI D     L SL +L  + L NN +  V  
Sbjct: 156 LSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS- 211

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDL 504
               +   L I+ L+    +       ++L     +        AP  I         +L
Sbjct: 212 -PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

Query: 505 SQNSLQSIPE 514
           + N    I  
Sbjct: 271 TWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 60/325 (18%), Positives = 113/325 (34%), Gaps = 48/325 (14%)

Query: 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203
                I  +       +   K+    + +T       A    +T L A    +  + E +
Sbjct: 4   TQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGV 59

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263
             L+ LI L+L  N+I  + + +     + E  +  N L  + A +  L  + TLDL S 
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTST 117

Query: 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
           Q+ +    A    L VL L  N ++ + P +  +T L+ L +    +  L + L N    
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TPLAN---- 171

Query: 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
             L  L                                L  +   +S I S +     + 
Sbjct: 172 --LSKL------------------------------TTLKADDNKISDI-SPLASLPNLI 198

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ L  N I ++ P L++ ++L  + L+   I + P     +L       +       + 
Sbjct: 199 EVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIA 255

Query: 444 SDGFKDIPMLQILDLSYNIASLPEN 468
                D       +L++N+ S   N
Sbjct: 256 PATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           LQ L L  N I  +   L  L  L  L++ + ++S+L   +  L  L +L    N I  I
Sbjct: 131 LQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S   L++    +NQ+ ++ S L    NL     +N  IT+ P    + + +    
Sbjct: 189 SP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQP-VFYNNNLVVPNV 245

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           V+G     ++   I+          + NL + +  
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 470 PFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 529
           P  +L +  ++               L  +  L      + +I EG + L +L  L+L D
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKD 72

Query: 530 NNISALPP 537
           N I+ L P
Sbjct: 73  NQITDLAP 80

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (268), Expect = 7e-25
 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 32/242 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + + I     I+++             N+    +++      EL+ +  +  + + I  +
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I     + K   + N+L ++   L    NL       N I  L   L D  K+  L 
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLS 115

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +E N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I    
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-- 170

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
                                 L  L+KL  L L  N + +    A    L VL+L +  
Sbjct: 171 ----------------------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208

Query: 287 LS 288
             
Sbjct: 209 CL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 98.6 bits (245), Expect = 6e-22
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L+  +++   +   E   I ++  + + I+ +   +    ++  L L+ NK+ D  
Sbjct: 24  IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK 81

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              LT+L +L  L LD N ++ +     KD+  L+ L L +N I+ +        LP L+
Sbjct: 82  P--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLE 134

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
            LYL        T + RL +L  L L  N +  I      LT L  L LS N+IS L  
Sbjct: 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 96.3 bits (239), Expect = 4e-21
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 26/235 (11%)

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           + + +    P++ +       P  A  + ++  L +   ++A T + +L ++        
Sbjct: 1   MGETITVSTPIKQIF------PDDAFAETIKDNLKKKSVTDAVT-QNELNSI-------- 45

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            ++     ++ ++   I     +TKL L+ N + ++ P L++  +L  L L  NKIKD  
Sbjct: 46  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  L  L  L L++N +  +  +G   +P L+ L L  N I  +      S L  L 
Sbjct: 104 S--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLD 156

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533
            L L          +  L +L+ L LS+N +  +      L +L  L+L      
Sbjct: 157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.2 bits (223), Expect = 3e-19
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 12/159 (7%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +     +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 22  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 78

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQ 498
            +      ++  L  L L  N I  L        L  L+ L L    + +    ++ L Q
Sbjct: 79  DIK--PLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 132

Query: 499 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           L  L L  N +  I      LT L  L L DN IS + P
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP 170

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 1e-18
 Identities = 50/285 (17%), Positives = 96/285 (33%), Gaps = 49/285 (17%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           +G     S  +K+   +         +L   S++       ++ ++ +++   + +++++
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ 59

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                      ++YL                         +     +L L G  L+ I  
Sbjct: 60  G----------IQYL-----------------------PNV----TKLFLNGNKLTDI-K 81

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            +     +  L L  N I++L   L     L++L L  N I D     L  L  L  L L
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL 138

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDI 493
            NN +  +       +  L  L L  N I+ +    P + L  LQ LYL          +
Sbjct: 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRAL 193

Query: 494 LRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPP 537
             L+ L +L+L      +       NL     +  +D ++     
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 86.3 bits (213), Expect = 5e-18
 Identities = 55/330 (16%), Positives = 104/330 (31%), Gaps = 71/330 (21%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           + E I     +  +     + +  I+ +L +  +    +                     
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT--------------------- 38

Query: 246 PAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
                +L+ +  +  +++ +K    ++     ++ L L+ N L+ + P +  +  L  L 
Sbjct: 39  ---QNELNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIKP-LTNLKNLGWLF 93

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N ++ L S          LK L                        +L    K LSL
Sbjct: 94  LDENKIKDLSS----------LKDL-----------------------KKL----KSLSL 116

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
           E   +S I   +    ++  L L  N I ++   LS    L TL L  N+I D     L 
Sbjct: 117 EHNGISDING-LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP--LA 172

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRM 484
            L+ L  L L  N +  +       +  L +L+L             S+L     +    
Sbjct: 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 485 QLREAPTDILRLQQLRILDLSQNSLQSIPE 514
                P  I         ++  +  +   E
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTNE 260

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.6 bits (141), Expect = 3e-09
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L L +N I  +   L  L  L  L++  N++S++   +  L  L++L +S N I  +
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL 190

Query: 107 PDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
              +     L   +  S +   +  +     +  +  K ++  + + PE ++D     K 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKP 248

Query: 166 DVEGNKLT 173
           +V+ +   
Sbjct: 249 NVKWHLPE 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  104 bits (261), Expect = 9e-25
 Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 11/202 (5%)

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCAS 404
           +  + + L   + EL      L  I    +   G++ K+++S+N + E+      S+   
Sbjct: 21  VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 405 LQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-- 461
           L  + + + N +         +L +L  L + N  ++ +P           +LD+  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 462 IASLPENPPFSSLPH-LQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 517
           I ++  N  F  L      L+L    ++E         Q   +     N+L+ +P   F 
Sbjct: 141 IHTIERNS-FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 518 NLTSLTELDLSDNNISALPPEL 539
             +    LD+S   I +LP   
Sbjct: 200 GASGPVILDISRTRIHSLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.0 bits (213), Expect = 2e-18
 Identities = 50/291 (17%), Positives = 96/291 (32%), Gaps = 54/291 (18%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN 285
           CS   F    + ++ +P++L        L     +L+   ++         L  +++S N
Sbjct: 9   CSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQN 64

Query: 286 -SLSGLPPEI-GKMTTLRKL-LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
             L  +  ++   +  L ++ +   N L  +         P L                 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN-LPNL----------------- 106

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-EITKLDLSRN-SIQELPPELS 400
                            + L +    +  +P        +   LD+  N +I  +     
Sbjct: 107 -----------------QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 401 S--CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                    L L++N I++  ++             DNN L ++P+D F       ILD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 459 SYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS 508
           S   I SLP      +L  L+       L++ PT + +L  L    L+  S
Sbjct: 210 SRTRIHSLPSY-GLENLKKLRARSTY-NLKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.3 bits (211), Expect = 3e-18
 Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 24/266 (9%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G     L+ +   
Sbjct: 7   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIE-- 60

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEI-WEAGEITKLDLSRN 390
           + +N+       + D+ +   +L     E+ +E  N L  I  E       +  L +S  
Sbjct: 61  ISQNDVL--EVIEADVFSNLPKL----HEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 391 SIQELPPEL-SSCASLQTLILSRN-KIKDWPDAILTSLSS-LSCLKLDNNPLRQVPSDGF 447
            I+ LP            L +  N  I          LS     L L+ N ++++ +  F
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL-RMQLREAPTDILR-LQQLRILDL 504
               + ++     N +  LP +  F        L + R ++   P+  L  L++LR    
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDN 530
              +L+ +P   + L +L E  L+  
Sbjct: 234 --YNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 37/269 (13%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
           ++         + ++P+++ +N                 +L      +  +++       
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRN---------------AIELRFVLTKLRVIQKGAFSGFG 54

Query: 69  LLTVLNVSHNK-LSELPA-AIGELHMLKSLDVS-FNSIMKIPDEI-GSATALVKFDCSSN 124
            L  + +S N  L  + A     L  L  + +   N+++ I  E   +   L     S+ 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 125 QLKELPSSLG------RCLNLSDFKASNNCITSLPEDLAD--CSKMSKLDVEGNKLTVLS 176
            +K LP            L++ D    N  I ++  +       +   L +  N +  + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQD----NINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N+      +    ++  N L  +P  +    S  + LD+ + RI S+PS        L  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSN 263
                  L  LP  L KL  L    L   
Sbjct: 231 RS--TYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.6 bits (160), Expect = 8e-12
 Identities = 47/280 (16%), Positives = 91/280 (32%), Gaps = 51/280 (18%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM--PET 202
             + +T +P DL       +L     KL V+     + +  L ++  S+N +  +   + 
Sbjct: 17  QESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 203 IGSLSRLIRLDL-HQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLD 259
             +L +L  + +   N +L I         +L    + N  +  LP        +   LD
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 260 LHSN----QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG-NPLRTLR 314
           +  N     ++            +L L+ N +  +       T L +L L+  N L  L 
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL- 193

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                                           D+   A+        L +    + ++PS
Sbjct: 194 ------------------------------PNDVFHGASGP----VILDISRTRIHSLPS 219

Query: 375 EIWEAGEITKLD-LSRNSIQELPPELSSCASLQTLILSRN 413
              E   + KL   S  ++++LP  L    +L    L+  
Sbjct: 220 YGLE--NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM 104
              L L  N I+++         L  +    +N L ELP            LD+S   I 
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 105 KIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
            +P     +   L     S+  LK+LP +L + + L +   +   
Sbjct: 216 SLPSYGLENLKKLRAR--STYNLKKLP-TLEKLVALMEASLTYPS 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (253), Expect = 5e-24
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I+++             N+    +++      EL+ +  +  + + I  +  
Sbjct: 6   ETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q 62

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
            I     + K   + N+L ++   L    NL       N +  L   L D  K+  L +E
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I   ++G
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAG 176

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L   Y+  N +S L   L  L  L  L+L S +     +      +    + N   S
Sbjct: 177 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 289 GLPPEI 294
            + PEI
Sbjct: 236 LVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 88.2 bits (219), Expect = 1e-19
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 11/179 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L+  +++       E   I ++  + + I+ +   +    ++  L L+ NK+ D  
Sbjct: 27  IKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK 84

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L +L +L  L LD N ++ +     KD+  L+ L L +N I+ +        LP L+
Sbjct: 85  P--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLE 137

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
            LYL        T + RL +L  L L  N +  I      LT L  L LS N+IS L  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 11/180 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            ++     ++ ++   I     +TKL L+ N + ++ P L++  +L  L L  NK+KD  
Sbjct: 49  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  L  L  L L++N +  +  +G   +P L+ L L  N I  +      S L  L 
Sbjct: 107 S--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLD 159

Query: 479 ELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
            L L          +  L +L+ L LS+N +  +      L +L  L+L        P  
Sbjct: 160 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.0 bits (208), Expect = 4e-18
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + ++I  +++I+ + + ++ LP +T L ++ NKL+++   +  L  L  L +  N +  +
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL 105

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +     L       N + ++ + L     L      NN IT +   L+  +K+  L 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 162

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +E N+++ +    +A  T L  L  SKN ++ +   +  L  L  L+L     L+ P +
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +     +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 25  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQL 499
            +      ++  L  L L  N +  L        L  L+ L L          ++ L QL
Sbjct: 82  DIK--PLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
             L L  N +  I      LT L  L L DN IS + P
Sbjct: 137 ESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.5 bits (186), Expect = 3e-15
 Identities = 47/261 (18%), Positives = 90/261 (34%), Gaps = 49/261 (18%)

Query: 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
               +L   S++       ++ ++ +++   + +++++           ++YL       
Sbjct: 26  TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG----------IQYL------- 67

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                             +     +L L G  L+ I   +     +  L L  N +++L 
Sbjct: 68  ----------------PNV----TKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLS 106

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             L     L++L L  N I D     L  L  L  L L NN +  +       +  L  L
Sbjct: 107 S-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161

Query: 457 DLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP-E 514
            L  N I+ +    P + L  LQ LYL          +  L+ L +L+L      + P  
Sbjct: 162 SLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPIN 218

Query: 515 GFKNLTSLTELDLSDNNISAL 535
              NL     +  +D ++   
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 5e-15
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L  N ++ L   L++L  L  L++ HN +S++   +  L  L+SL +  N I  I
Sbjct: 92  LGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI 149

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L       NQ+ ++   L     L +   S N I+ L   LA    +  L+
Sbjct: 150 TV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLE 206

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           +   +      N  ++  +   +  +   L   PE I       + ++  +       
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 55/301 (18%), Positives = 97/301 (32%), Gaps = 46/301 (15%)

Query: 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
                I  I  S        +  +   +++       +L+ +  +  +++ +K       
Sbjct: 9   TVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQY 66

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              ++ L L+ N L+ + P +  +  L  L L  N ++ L SSL +      LK L    
Sbjct: 67  LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-SSLKD------LKKL---- 114

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393
                                     K LSLE   +S I   +    ++  L L  N I 
Sbjct: 115 --------------------------KSLSLEHNGISDING-LVHLPQLESLYLGNNKIT 147

Query: 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
           ++   LS    L TL L  N+I D     L  L+ L  L L  N +  +       +  L
Sbjct: 148 DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNL 202

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP 513
            +L+L             S+L     +         P  I         ++  +  +   
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

Query: 514 E 514
           E
Sbjct: 263 E 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 50/286 (17%), Positives = 110/286 (38%), Gaps = 27/286 (9%)

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
           + +E I     +  +  +  + +  I+ +L +  +     + +   S+ +    N+ + +
Sbjct: 3   LGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS 60

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +   +  L  +  L L+ N+L +    A    L  L L  N +  L   +  +  L+ L 
Sbjct: 61  VQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118

Query: 305 LTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362
           L  N +  +     L        L+ L   L  N+ ++ +      ++  T+L      L
Sbjct: 119 LEHNGISDINGLVHLPQ------LESLY--LGNNKITDITV-----LSRLTKL----DTL 161

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI 422
           SLE   +S I   +    ++  L LS+N I +L   L+   +L  L L   +  + P   
Sbjct: 162 SLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPINH 219

Query: 423 LTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468
            ++L   + +K  +  L  V  +   D    +  ++ +++      
Sbjct: 220 QSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNE 263

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 99.0 bits (247), Expect = 1e-23
 Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS 427
           L ++PS I    +  KLDL    +  L          L  L L  N+++     +   L+
Sbjct: 26  LDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-Q 485
            L  L L NN L  +P   F  +  L  L L  N + SLP    F  L  L+EL L   Q
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQ 142

Query: 486 LREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           L+  P     +L  L+ L LS N LQS+P G F  L  L  + L  N
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 89.4 bits (222), Expect = 3e-20
 Identities = 52/138 (37%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
           A  + L L    +    DA    L+ L+ L LD N L+ + +  F D+  L  L L+ N 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 462 IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKN 518
           +ASLP    F  L  L +LYL   QL+  P+ +  RL +L+ L L+ N LQSIP G F  
Sbjct: 95  LASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 519 LTSLTELDLSDNNISALP 536
           LT+L  L LS N + ++P
Sbjct: 154 LTNLQTLSLSTNQLQSVP 171

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 80.1 bits (198), Expect = 4e-17
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           L L +  L  +    F+ +  L  L+L YN + +L     F  L  L  L L   QL   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQLASL 98

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
           P  +   L QL  L L  N L+S+P G F  LT L EL L+ N + ++P 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           DC    L  +PS  G   +       +  + +L +      +K++ L+++ N+L  LS  
Sbjct: 20  DCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           +    T L  L  + N L  +P  +   L++L +L L  N++ S+PS +      L E  
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           +  N L ++PA    KL+ L TL L +NQL+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-R 495
           L  VPS     IP   + LDL     +   +  F  L  L  L L   QL+     +   
Sbjct: 26  LDSVPSG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 496 LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
           L +L  L L+ N L S+P G F +LT L +L L  N + +LP 
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 38/185 (20%)

Query: 280 LDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           LDL +  L+ L       +T L  L L  N L+TL + + +  T                
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---------------- 83

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
                                  L L    L+++P  +++   ++ KL L  N ++ LP 
Sbjct: 84  -------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

Query: 398 EL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
            +      L+ L L+ N+++  P      L++L  L L  N L+ VP   F  +  LQ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 457 DLSYN 461
            L  N
Sbjct: 185 TLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 26/177 (14%)

Query: 45  VDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
            D +KL L    +  L     R L  LT LN+ +N+L  L A +            F+ +
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------------FDDL 82

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
                     T L     ++NQL  LP  +   L  L       N + SLP  + D  +K
Sbjct: 83  ----------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           + +L +  N+L  +        T L  L  S N L  +P      L +L  + L  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 6e-09
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 40/186 (21%)

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLR 314
           LDL S  L        +   +L+ L+L  N L  L   +   +T L  L L  N L +L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
             + +  T   L  L   L  N+                               L ++PS
Sbjct: 100 LGVFDHLTQ--LDKLY--LGGNQ-------------------------------LKSLPS 124

Query: 375 EIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
            +++   ++ +L L+ N +Q +P        +LQTL LS N+++  P      L  L  +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 433 KLDNNP 438
            L  N 
Sbjct: 185 TLFGNQ 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 97.8 bits (244), Expect = 3e-23
 Identities = 29/188 (15%), Positives = 71/188 (37%), Gaps = 12/188 (6%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN-KIK 416
            ++  +   ++  IPS          L L    ++ +P    S+  ++  + +S +  ++
Sbjct: 13  EEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 417 DWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
                   +LS ++ +++ +   L  +  D  K++P+L+ L +    +   P+     S 
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 475 PHLQELYLR--MQLREAPTDILR--LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 530
                L +     +   P +  +    +   L L  N   S+     N T L  + L+ N
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189

Query: 531 N-ISALPP 537
             ++ +  
Sbjct: 190 KYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 13/156 (8%)

Query: 383 TKLDLSRN-SIQELPPE-LSSCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKL-DNNP 438
           T +++    ++  + P+ L     L+ L +    +K +PD   + S      L++ DN  
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 439 LRQVPSDGFKDIP-MLQILDLSYN-IASLPENPPFSSLPHLQELYLRM--QLREAPTDIL 494
           +  +P + F+ +      L L  N   S+     F+    L  +YL     L     D  
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-FN-GTKLDAVYLNKNKYLTVIDKDAF 200

Query: 495 R--LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDL 527
                   +LD+SQ S+ ++P    ++L  L   + 
Sbjct: 201 GGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 32/213 (15%), Positives = 78/213 (36%), Gaps = 24/213 (11%)

Query: 118 KFDCSSNQLKELPSSLG--RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGN-KLT 173
            F  +   ++ +PS     + L L         + ++P    ++   +S++ V  +  L 
Sbjct: 15  DFRVTCKDIQRIPSLPPSTQTLKLI-----ETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 174 VLSNNLIASWTMLTELIASKN--LLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISGC 229
            L ++   + + +T +       L    P+ +  L  L  L +    +   P  + +   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 230 CSLAEFYM-GNNALSALPAEL--GKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLS 283
                  +  N  ++++P     G  ++  TL L++N      V+       +L  + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLN 187

Query: 284 -NNSLSGLPPEI--GKMTTLRKLLLTGNPLRTL 313
            N  L+ +  +   G  +    L ++   +  L
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 12/193 (6%)

Query: 46  DLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHN-KLSELPA-AIGELHMLKSLDVSFN- 101
             Q L L   ++  +      NLP ++ + VS +  L +L + +   L  +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK---ASNNCITSLPEDLA 157
           ++  I  +       L      +  LK  P           F      N  +TS+P +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 158 D--CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLD 213
              C++   L +  N  T +         +    +     L  + +    G  S    LD
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 214 LHQNRILSIPSSI 226
           + Q  + ++PS  
Sbjct: 212 VSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 38/253 (15%), Positives = 85/253 (33%), Gaps = 55/253 (21%)

Query: 67  LPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN 124
            P    L +    L  +P+ A   L  +  + VS + ++ ++            F     
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS--------FY---- 77

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
            L ++       + + +       +T +  D L +   +  L +    L +  +      
Sbjct: 78  NLSKV-----THIEIRN----TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK--- 125

Query: 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN-RILSIPS-SISGCCS-LAEFYMGNN 240
                              + S      L++  N  + SIP  +  G C+      + NN
Sbjct: 126 -------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 241 ALSALPAELGKLSKLGTLDLHSNQ----LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGK 296
             +++       +KL  + L+ N+    + +          S+LD+S  S++ LP +   
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG-- 224

Query: 297 MTTLRKLLLTGNP 309
           +  L++L+     
Sbjct: 225 LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 36/258 (13%), Positives = 81/258 (31%), Gaps = 62/258 (24%)

Query: 209 LIRLDLHQNRILSIPS-SISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHSNQL 265
              L L +  + +IPS + S   +++  Y+  +  L  L +     LSK+  +++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-- 90

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
                               +L+ + P+   ++  L+ L +    L+     L    +  
Sbjct: 91  -------------------RNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYSTD 130

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE--AGEI 382
           +   L                                   +   +++IP   ++    E 
Sbjct: 131 IFFIL--------------------------------EITDNPYMTSIPVNAFQGLCNET 158

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSL-SSLSCLKLDNNPLR 440
             L L  N    +     +   L  + L++NK +          + S  S L +    + 
Sbjct: 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 441 QVPSDGFKDIPMLQILDL 458
            +PS G + +  L   + 
Sbjct: 219 ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 47  LQKLILAHNN-IEKLKED-LRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNS 102
           +  + + +   +  +  D L+ LPLL  L + +  L   P    +    +   L+++ N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 103 -IMKIPDEI--GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLAD 158
            +  IP     G     +     +N    +         L       N  +T + +D   
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 159 --CSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              S  S LDV    +T L +  +     L   
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 7/152 (4%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             +D     + E+P  L    ++  + L +N IK  P    +    L  + L NN + ++
Sbjct: 14  NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQL 499
             D F+ +  L  L L  N I  LP++  F  L  LQ L L   ++     D    L  L
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSL-FEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            +L L  N LQ+I +G F  L ++  + L+ N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 90.5 bits (225), Expect = 5e-21
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           ++L+ N ++ +P   F     L+ +DLS N I+ L  +  F  L  L  L L   ++ E 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKITEL 95

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538
           P  +   L  L++L L+ N +  +    F++L +L  L L DN +  +   
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSR 412
           L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      SL +L+L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPF 471
           NKI + P ++   L SL  L L+ N +  +  D F+D+  L +L L  N + ++ +   F
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TF 148

Query: 472 SSLPHLQELYL 482
           S L  +Q ++L
Sbjct: 149 SPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 76.6 bits (189), Expect = 4e-16
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL- 494
           L ++P++    +P  +  + L  N I  +P    FS    L+ + L   Q+ E   D   
Sbjct: 23  LTEIPTN----LPETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAFQ 77

Query: 495 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
            L+ L  L L  N +  +P+  F+ L SL  L L+ N I+ L  
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
           DC    L E+P++L      + L       N I  +P    +   K+ ++D+  N+++ L
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
           + +       L  L+   N +  +P+++   L  L  L L+ N+I  +         +L 
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
              + +N L  +       L  + T+ L  N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
             + ++ L  N I+ +          L  +++S+N++SEL       L  L SL +  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLAD-C 159
           I ++P  +     +L     ++N++  L     + L NL+     +N + ++ +      
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 160 SKMSKLDVEGN 170
             +  + +  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + + L    +S +  +       +  L L  N I ELP  L     SLQ L+L+ NKI  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
                   L +L+ L L +N L+ +    F  +  +Q + L+ N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 38/164 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            + L  N++  +PP        LR++ L+ N +  L      G     L+ L        
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----LRSL-------- 82

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELP 396
                                   L L G  ++ +P  ++E    +  L L+ N I  L 
Sbjct: 83  ----------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            +      +L  L L  NK++       + L ++  + L  NP 
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           +     ++ ++   I     +  L L  N + ++   L    +L  LIL+ N+++  P+ 
Sbjct: 46  IIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNG 103

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
           +   L++L  L L  N L+ +P   F  +  L  L+L++N + SLP+   F  L +L EL
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTEL 162

Query: 481 YLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            L   QL+  P  +  +L QL+ L L QN L+S+P+G F  LTSL  + L DN
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 88.9 bits (221), Expect = 6e-20
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
               P + +      K +L + S+ +   + +   S+  +I + + IK      +  L +
Sbjct: 10  KQIFPDDAFAET--IKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQG--IQYLPN 64

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QL 486
           +  L L  N L  + +   K++  L  L L+ N + SLP    F  L +L+EL L   QL
Sbjct: 65  VRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVLVENQL 121

Query: 487 REAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
           +  P  +  +L  L  L+L+ N LQS+P+G F  LT+LTELDLS N + +LP 
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            +S    Q  P +    A      L +  + D        L+S+  +  +N+ ++ V   
Sbjct: 4   TVSTPIKQIFPDDAF--AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQ-- 57

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRIL 502
           G + +P ++ L L  N +  +        L +L  L L   QL+  P  +  +L  L+ L
Sbjct: 58  GIQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114

Query: 503 DLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
            L +N LQS+P+G F  LT+LT L+L+ N + +LP 
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 40/231 (17%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
           + +L +  +    +      S+ +    N+ + ++   +  L  +  L L  N+L +   
Sbjct: 23  KANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA 80

Query: 271 EACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                 L+ L L+ N L  LP  +  K+T L++L+L  N L++L   + +  T       
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------- 133

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L+L    L ++P  +++    +T+LDLS
Sbjct: 134 ----------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165

Query: 389 RNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            N +Q LP  +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
             S+   +  P          NL         +T         + + ++    + +  + 
Sbjct: 4   TVSTPIKQIFPDDAFAETIKANLK-----KKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ 57

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQNRILSIPSSI-SGCCSL 232
              I     +  L    N L      I     L+ L  L L  N++ S+P+ +     +L
Sbjct: 58  G--IQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111

Query: 233 AEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDLSNNSLSG 289
            E  +  N L +LP  +  KL+ L  L+L  NQL+     V      L+ LDLS N L  
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171

Query: 290 LPPEI-GKMTTLRKLLLTGNPLR 311
           LP  +  K+T L+ L L  N L+
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K  L   ++         L  +  +  +++ +  +   I  L  ++ L +  N +  
Sbjct: 20  ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD 77

Query: 106 IP--DEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
           I    E+ + T L     + NQL+ LP+ +   L NL +     N + SLP+ + D  + 
Sbjct: 78  ISALKELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 220
           ++ L++  N+L  L   +    T LTEL  S N L  +PE +   L++L  L L+QN++ 
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 221 SIP 223
           S+P
Sbjct: 195 SVP 197

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 92.0 bits (229), Expect = 2e-21
 Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 29/166 (17%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSL 426
           L+ IP  I +     +L L+ N    L           L+ +  S NKI D  +      
Sbjct: 23  LNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQ 485
           S ++ + L +N L  V    FK +  L+ L L  N I  +  +  F  L  ++ L L   
Sbjct: 81  SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSL--- 136

Query: 486 LREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
                                N + ++  G F  L SL+ L+L  N
Sbjct: 137 -------------------YDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 87.4 bits (217), Expect = 8e-20
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLRE 488
           L+L+NN    + + G FK +P L+ ++ S N I  + E   F     + E+ L   +L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVNEILLTSNRLEN 95

Query: 489 APTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
               +   L+ L+ L L  N +  +    F  L+S+  L L DN I+ + P
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.9 bits (195), Expect = 5e-17
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL- 494
           L ++P      IP     L L+ N    L     F  LP L+++     ++ +       
Sbjct: 23  LNKIPEH----IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 495 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
               +  + L+ N L+++    FK L SL  L L  N I+ +  
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.9 bits (195), Expect = 6e-17
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLI 409
             +   + EL L     + + +        ++ K++ S N I ++        + +  ++
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN 468
           L+ N++++    +   L SL  L L +N +  V +D F  +  +++L L  N I ++   
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 469 PPFSSLPHLQELYL 482
             F +L  L  L L
Sbjct: 148 -AFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+ +L ++P  +                   P+        ++L +  N+ TVL    
Sbjct: 17  DCSNQKLNKIPEHI-------------------PQYT------AELRLNNNEFTVLEATG 51

Query: 180 I-ASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           I      L ++  S N +  + E      S +  + L  NR+ ++   +  G  SL    
Sbjct: 52  IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           + +N ++ +  +    LS +  L L+ NQ+ 
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           ++++     ++ I    +E A  + ++ L+ N ++ +  ++     SL+TL+L  N+I  
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +     LSS+  L L +N +  V    F  +  L  L+L  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 279 VLDLSNNSLSGLPPEIG--KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L L+NN  + L       K+  LRK+  + N +  +      G                
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------------- 79

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL 395
                          A+ +     E+ L    L  +  ++++    +  L L  N I  +
Sbjct: 80  ---------------ASGV----NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120

Query: 396 PPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
             +     +S++ L L  N+I         +L SLS L L  NP 
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
               +L L +N    L+     + LP L  +N S+NK++++   A      +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC 159
            +  +  ++     +L      SN++  + +     L ++      +N IT++     D 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 160 -SKMSKLDVEGN 170
              +S L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 87.1 bits (216), Expect = 1e-19
 Identities = 50/131 (38%), Positives = 65/131 (49%), Gaps = 4/131 (3%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            + Q L L  N+I      +  SL +L  L L +N L  +P   F  +  L +LDL  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 462 IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNL 519
           +  LP    F  L HL+EL++   +L E P  I RL  L  L L QN L+SIP G F  L
Sbjct: 100 LTVLPSA-VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 520 TSLTELDLSDN 530
           +SLT   L  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           L L +N + ++    F  +  L+ L L  N + +LP    F SL  L  L L   QL   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTNQLTVL 103

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 536
           P+ +  RL  L+ L +  N L  +P G + LT LT L L  N + ++P
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 6e-10
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            L +  N++T L   +  S   L EL    N L  +P  +  SL++L  LDL  N++  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           PS++      L E +M  N L+ LP  + +L+ L  L L  NQLK
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 5/148 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNN 178
           DC S +   +P+  G   N       +N IT L   + D    + +L +  N+L  L   
Sbjct: 25  DCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
           +  S T LT L    N L  +P  +   L  L  L +  N++  +P  I     L    +
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142

Query: 238 GNNALSALPAE-LGKLSKLGTLDLHSNQ 264
             N L ++P     +LS L    L  N 
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            L LH N+I  +   +     +L E Y+G+N L ALP  +   L++L  LDL +NQL   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV- 102

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                 L          L  L +  N L+ LP  I ++T L  L L  N L+
Sbjct: 103 ------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 463 ASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNL 519
           AS+P   P ++    Q LYL   Q+ +    +   L  L+ L L  N L ++P G F +L
Sbjct: 32  ASVPAGIPTNA----QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87

Query: 520 TSLTELDLSDNNISALPP 537
           T LT LDL  N ++ LP 
Sbjct: 88  TQLTVLDLGTNQLTVLPS 105

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
            + Q L L  N I KL+  +  +L  L  L +  N+L  LP  +   L  L  LD+  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           +  +P  +      L +     N+L ELP  + R  +L+      N + S+P 
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 45/166 (27%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRS----SLVNGPTPALLKYLRSRL 333
           +L L +N ++ L P +   +  L++L L  N L  L      SL                
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------------- 89

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSI 392
                                       L L    L+ +PS +++    + +L +  N +
Sbjct: 90  -------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            ELP  +     L  L L +N++K  P      LSSL+   L  NP
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            ++D        +P  I +           NQ+ +L   +   L NL +    +N + +L
Sbjct: 22  TTVDCRSKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
           P  + D  ++++ LD+  N+LTVL + +      L EL    N L  +P  I  L+ L  
Sbjct: 80  PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 212 LDLHQNRILSIP 223
           L L QN++ SIP
Sbjct: 140 LALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 362 LSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWP 419
           L L    L A+P  ++    ++T LDL  N +  LP  +      L+ L +  NK+ + P
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP 128

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             I   L+ L+ L LD N L+ +P   F  +  L    L  N
Sbjct: 129 RGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 88.7 bits (219), Expect = 9e-19
 Identities = 44/249 (17%), Positives = 67/249 (26%), Gaps = 15/249 (6%)

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
                K   +  +       +  +   L + + S  +   L S L  C  L +       
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQEL--EPEN 381

Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLS 207
              L   +     +  L  E   L   S    +               L          +
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  L L    +  +   +     +    + +N L ALP  L  L  L  L    N L+ 
Sbjct: 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500

Query: 268 YCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               A   RL  L L NN L        +     L  L L GN L              +
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGI 551

Query: 326 LKYLRSRLP 334
            + L   LP
Sbjct: 552 QERLAEMLP 560

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 41/201 (20%), Positives = 73/201 (36%), Gaps = 25/201 (12%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ----------- 406
           + KE  L          +     ++ + +LS      L  EL SC  LQ           
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386

Query: 407 TLILSRNKIKD--WPDAILTSLSSLSCL--------KLDNNPLRQVPSDGFKDIPMLQIL 456
           T+IL    +    +    L   S+L  +            +      S    +   +++L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG 515
            L++   ++  +     L  +  L L   +LR  P  +  L+ L +L  S N+L+++  G
Sbjct: 447 HLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503

Query: 516 FKNLTSLTELDLSDNNISALP 536
             NL  L EL L +N +    
Sbjct: 504 VANLPRLQELLLCNNRLQQSA 524

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.5 bits (177), Expect = 1e-13
 Identities = 51/360 (14%), Positives = 93/360 (25%), Gaps = 46/360 (12%)

Query: 90  LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149
              L       + +  +      A   V F         + + L                
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
                       +    +           +        E +  K+          +  +L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            R +L   +   + S +  C  L E    N     L   +  +  L  L      L+ + 
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENK--WCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 270 ----VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               V+  +    + DL +  L        +   +R L L    L  L            
Sbjct: 410 TLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH---------- 458

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385
           L+ L                           +    L L    L A+P  +     +  L
Sbjct: 459 LEQL---------------------------LLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPS 444
             S N+++ +   +++   LQ L+L  N+++       L S   L  L L  N L Q   
Sbjct: 492 QASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 2e-13
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
            E  D++ L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N
Sbjct: 438 MEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 102 SIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           ++  +   + +   L +    +N+L++  +   L  C  L       N +     
Sbjct: 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 2e-12
 Identities = 43/288 (14%), Positives = 79/288 (27%), Gaps = 67/288 (23%)

Query: 258 LDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           + L           A   +L   +LS    + L  E+     L++L              
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL----- 386

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITM-ATRLSVTSKELSLEGMNLSAIPSEI 376
                  ++  +R+  P   + E       L  +   R +      S   +         
Sbjct: 387 ------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE---NSVLK 437

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            E  ++  L L+   +  L   L     +  L LS N+++  P A L +L  L  L+  +
Sbjct: 438 MEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASD 495

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRL 496
           N L                                 ++  +                  L
Sbjct: 496 NAL--------------------------------ENVDGVA----------------NL 507

Query: 497 QQLRILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPELVSV 542
            +L+ L L  N LQ         +   L  L+L  N++         +
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 5/166 (3%)

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
               +    +  L ++  +    + ++   L    LS  K       +  S   L  L+ 
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE-SCKELQELEP 379

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSY-NIASLPENPPFSSLPHLQELYLRMQLREAPTDI 493
           +N           + +  L     +    ++L    P  +            L E     
Sbjct: 380 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS--KFLLENSVLK 437

Query: 494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
           +    +R+L L+   L  +    + L  +T LDLS N + ALPP L
Sbjct: 438 MEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPAL 482

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 82.4 bits (204), Expect = 3e-18
 Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 7/152 (4%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           T ++        +P  +   A    L L  N +K  P+ +   L+SL+ L L  N L+ +
Sbjct: 10  TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQL 499
           P+  F  +  L  L+LS N + SLP    F  L  L+EL L   QL+  P  +  +L QL
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGV-FDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           + L L QN L+S+P+G F  LTSL  + L DN
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 75.5 bits (186), Expect = 8e-16
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           L L+ N L+ +P+  F ++  L  L L  N + SLP    F+ L  L  L L   QL+  
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-FNKLTSLTYLNLSTNQLQSL 91

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALP 536
           P  +  +L QL+ L L+ N LQS+P+G F  LT L +L L  N + ++P
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQS 511
             LDL  N      N  F  L  L +LYL   +L+  P  +  +L  L  L+LS N LQS
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 512 IPEG-FKNLTSLTELDLSDNNISALPP 537
           +P G F  LT L EL L+ N + +LP 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPD 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            LD+E N L  L N +    T LT+L    N L  +P  +   L+ L  L+L  N++ S+
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           P+ +      L E  +  N L +LP  +  KL++L  L L+ NQLK
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 19/113 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            LDL  N + S+P+ +     SL + Y+G N L +LP  +  KL+ L  L+L +NQL+  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLR 311
                 L         +L  L L+ N L  LP  +  K+T L+ L L  N L+
Sbjct: 91  ------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 463 ASLPENPPFSSLPHLQELYLRM-QLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNL 519
            S+P   P  +      L L    L+  P  +   L  L  L L  N LQS+P G F  L
Sbjct: 20  TSVPTGIPAQT----TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75

Query: 520 TSLTELDLSDNNISALPP 537
           TSLT L+LS N + +LP 
Sbjct: 76  TSLTYLNLSTNQLQSLPN 93

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           T +       + +P  I        LD+  NS+  +P+ +    T+L +     N+L+ L
Sbjct: 10  TTVECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           P+ +   L +L+    S N + SLP  + D  +++ +L +  N+L  L + +    T L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           +L   +N L  +P+ +   L+ L  + LH N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 362 LSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWP 419
           L L G  L ++P+ ++     +T L+LS N +Q LP  +      L+ L L+ N+++  P
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           D +   L+ L  L+L  N L+ VP   F  +  LQ + L  N
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            +++        +P  I + T     D  +N LK LP+ +   L +L+      N + SL
Sbjct: 10  TTVECYSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
           P  + +  + ++ L++  N+L  L N +    T L EL  + N L  +P+ +   L++L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 211 RLDLHQNRILSIP 223
            L L+QN++ S+P
Sbjct: 128 DLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 38/163 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            LDL  NSL  LP  +  ++T+L +L L GN L++L + + N  T               
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT--------------- 76

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELP 396
                               +   L+L    L ++P+ +++   ++ +L L+ N +Q LP
Sbjct: 77  --------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
                L L  N+++ L       L  LT L +  NKL  LP  +  +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPE 154
           +  +P+ +    T L +   ++NQL+ LP  +  +   L D +   N + S+P+
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK--EYC 269
           + +     S+P+ I          +  N+L +LP     +L+ L  L L  N+L+     
Sbjct: 13  ECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 270 VEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           V      L+ L+LS N L  LP  +  K+T L++L L  N L++L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 6/104 (5%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLRE 488
           L L++N L ++ SDG F  +P L  L+L  N +  +  N  F    H+QEL L   +++E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKE 92

Query: 489 APTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
               +   L QL+ L+L  N +  +  G F++L SLT L+L+ N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 72.3 bits (178), Expect = 7e-15
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL- 494
           L+++P D    IP+    L L+ N +  +  +  F  LPHL +L L+  QL     +   
Sbjct: 20  LKEIPRD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75

Query: 495 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
               ++ L L +N ++ I    F  L  L  L+L DN IS + P
Sbjct: 76  GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 357 VTSKELSLEGMNLSAIPSEIW--EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRN 413
           + + EL L    L  I S+        + KL+L RN +  + P      + +Q L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           KIK+  + +   L  L  L L +N +  V    F+ +  L  L+L+ N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 187 TELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALS 243
           TEL+ + N L  +      G L  L++L+L +N++  I  +   G   + E  +G N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 244 ALPAEL-GKLSKLGTLDLHSNQLK 266
            +  ++   L +L TL+L+ NQ+ 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 20/113 (17%)

Query: 211 RLDLHQNRILSIPSS--ISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
            L L+ N +  I S         L +  +  N L+ +        S +  L L  N++KE
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 268 YCVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                  +         +L  L+L +N +S + P     + +L  L L  NP 
Sbjct: 93  -------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +L L+   L+ I    +E A  I +L L  N I+E+  ++      L+TL L  N+I  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 418 WPDAILTSLSSLSCLKLDNNPL 439
                   L+SL+ L L +NP 
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED--LADCSKMSKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D     N +  +  D        + KL+++ N+LT 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
           +  N     + + EL   +N +  +   +   L +L  L+L+ N+I  + 
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
           +   +L+L  N + ++  D     LP L  L +  N+L+ +   A      ++ L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            I +I +++      L   +   NQ+  + 
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 79.7 bits (197), Expect = 7e-17
 Identities = 38/179 (21%), Positives = 72/179 (40%), Gaps = 10/179 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L   +++ +     E   +   +   ++IQ L   +    +L+ L LS N+I D  
Sbjct: 22  VKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLS 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              L  L+ L  L ++ N L+ +          L  L L  N   L +      L +L+ 
Sbjct: 80  P--LKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNN--ELRDTDSLIHLKNLEI 132

Query: 480 LYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           L +R    ++   +  L +L +LDL  N + +   G   L  +  +DL+       P +
Sbjct: 133 LSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 11/158 (6%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
              K +L + S+ +L       + +Q      + I+      +   ++L  L L +N + 
Sbjct: 20  NAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS 76

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQL 499
            +     KD+  L+ L ++ N + +L           L  L+L          ++ L+ L
Sbjct: 77  DL--SPLKDLTKLEELSVNRNRLKNLN----GIPSACLSRLFLDNNELRDTDSLIHLKNL 130

Query: 500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
            IL +  N L+SI      L+ L  LDL  N I+    
Sbjct: 131 EILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.8 bits (192), Expect = 3e-16
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             K  L   ++  L    + L  +   N  ++ +  L   +     LK L +S N I  +
Sbjct: 21  AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL 78

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L +   + N+LK L  +      LS     NN +    + L     +  L 
Sbjct: 79  SP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILS 134

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +  NKL  +    +   + L  L    N +      +  L ++  +DL   + ++ P
Sbjct: 135 IRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 55/245 (22%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I ++      L      N+    +++L +   EL  +++ +   ++I  +  
Sbjct: 1   ESIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-- 56

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
                                 + +    NL +   S+N I+ L   L D +K+ +L V 
Sbjct: 57  ----------------------AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVN 93

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L  L+         L+ L    N L    +++  L  L  L +  N++ SI      
Sbjct: 94  RNRLKNLNGI---PSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM---- 145

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
                               LG LSKL  LDLH N++          +++ +DL+     
Sbjct: 146 --------------------LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185

Query: 289 GLPPE 293
             P +
Sbjct: 186 NEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 13/153 (8%)

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
                I ++ P     A+     L +  + D        LS +     DN+ ++ +   G
Sbjct: 4   QRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AG 58

Query: 447 FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDL 504
            +    L+ L LS+N I+ L    P   L  L+EL +   +L+    + +    L  L L
Sbjct: 59  MQFFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNRNRLKN--LNGIPSACLSRLFL 113

Query: 505 SQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
             N L+   +   +L +L  L + +N + ++  
Sbjct: 114 DNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.8 bits (174), Expect = 8e-14
 Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 14/208 (6%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +Q     ++NI+ L   ++    L  L++SHN++S+L   + +L  L+ L V+ N +  +
Sbjct: 43  VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL 100

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +  L +    +N+L++   SL    NL      NN + S+   L   SK+  LD
Sbjct: 101 --NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLD 156

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
           + GN++T      +     +  +  +       P      L     +     R +S P  
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYY 213

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLS 253
           IS   S  +  +       LP    ++S
Sbjct: 214 ISNGGSYVDGCVLWE----LPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 41/266 (15%), Positives = 79/266 (29%), Gaps = 45/266 (16%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
              L+     +L    + +   +     +   +  N+++  L   +   T L++L L+ N
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHN 73

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            +  L S L +      L  L                              +ELS+    
Sbjct: 74  QISDL-SPLKD------LTKL------------------------------EELSVNRNR 96

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L  +      +  +++L L  N +++    L    +L+ L +  NK+K      L  LS 
Sbjct: 97  LKNLNGI--PSACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSK 151

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLRE 488
           L  L L  N +      G   +  +  +DL+              L     +        
Sbjct: 152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWI 209

Query: 489 APTDILRLQQLRILDLSQNSLQSIPE 514
           +P  I          +         E
Sbjct: 210 SPYYISNGGSYVDGCVLWELPVYTDE 235

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 48/249 (19%)

Query: 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
                I  +     G  +  +  +G  +++ L +   +LS +   +  ++ ++       
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQF 61

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              L  L LS+N +S L P +  +T L +L +  N L     +L   P+  L        
Sbjct: 62  FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL----KNLNGIPSACL-------- 108

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393
                                       L L+   L      +     +  L +  N ++
Sbjct: 109 --------------------------SRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLK 141

Query: 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
            +   L   + L+ L L  N+I +     LT L  ++ + L        P     +   L
Sbjct: 142 SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPE---L 195

Query: 454 QILDLSYNI 462
            I +   + 
Sbjct: 196 YITNTVKDP 204

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 36/218 (16%)

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
           VN P      YL   L ++  +    T+  + ++          ++L  +N++ + + I 
Sbjct: 15  VNIPDSTFKAYLNGLLGQSSTANI--TEAQMNSL--------TYITLANINVTDL-TGIE 63

Query: 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
            A  I  L ++        P +S  ++L+ L +    +       L+ L+SL+ L + ++
Sbjct: 64  YAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQ 497
                       +P +  +DLSY       N   + +  L+                 L 
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSY-------NGAITDIMPLKT----------------LP 159

Query: 498 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 535
           +L+ L++  + +     G ++   L +L      I   
Sbjct: 160 ELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 21/156 (13%), Positives = 55/156 (35%), Gaps = 25/156 (16%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +T + L+  ++ +L   +    +++ L ++     ++    ++ LS+L  L++    +  
Sbjct: 46  LTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTS 102

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRI 501
                   +  L +LD+S++          ++LP +  + L                   
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL------------------- 143

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
              S N   +     K L  L  L++  + +     
Sbjct: 144 ---SYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 7/195 (3%)

Query: 55  NNIEKLKEDLRNLP---LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
               K  +D  N+P       LN    + S       +++ L  + ++  ++  +   I 
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIE 63

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 170
            A  +     ++       + +    NL   +     +TS    +L+  + ++ LD+  +
Sbjct: 64  YAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
                    I +   +  +  S N        + +L  L  L++  + +      I    
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFP 181

Query: 231 SLAEFYMGNNALSAL 245
            L + Y  +  +   
Sbjct: 182 KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN-LL 196
           +L+    +N  +T L   +     +  L +     T  +   I+  + L  L      + 
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 197 NGMPETIGSLSRLIRLDLHQNRI-LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 255
           +     +  L+ L  LD+  +    SI + I+    +    +  N        L  L +L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
            +L++  + + +Y       +L+ L   + ++ G 
Sbjct: 162 KSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           LT +  +   +  +   I     +  L ++     +  + ISG  +L    +    +++ 
Sbjct: 46  LTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
               L  L+ L  LD+  +   +  +       +++ +DLS N        +  +  L+ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 303 LLLTGNPLRTLR 314
           L +  + +   R
Sbjct: 164 LNIQFDGVHDYR 175

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 11/138 (7%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
           A+ QT + +     + PD+   +  +    +     + +        +  L  + L+   
Sbjct: 2   AAEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITE------AQMNSLTYITLANIN 55

Query: 462 IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLT 520
           +  L          ++++L +          I  L  L  L +    + S        LT
Sbjct: 56  VTDLT---GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112

Query: 521 SLTELDLSDNNISALPPE 538
           SLT LD+S +        
Sbjct: 113 SLTLLDISHSAHDDSILT 130

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           L LD N    VP +   +   L ++DLS N I++L     FS++  L  L L   +LR  
Sbjct: 36  LYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRCI 93

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           P      L+ LR+L L  N +  +PEG F +L++L+ L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL- 494
           L+ +P      IP  +  L L  N    +P+    S+  HL  + L   ++         
Sbjct: 22  LKVLPKG----IPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 495 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALP 536
            + QL  L LS N L+ IP   F  L SL  L L  N+IS +P
Sbjct: 76  NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKI 415
               EL L+G   + +P E+     +T +DLS N I  L  +  S+   L TLILS N++
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +  P      L SL  L L  N +  VP   F D+  L  L +  N
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 463 ASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLT 520
             LP+  P        ELYL   Q    P ++   + L ++DLS N + ++    F N+T
Sbjct: 23  KVLPKGIPRDV----TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 521 SLTELDLSDNNISALPP 537
            L  L LS N +  +PP
Sbjct: 79  QLLTLILSYNRLRCIPP 95

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
            CS+  LK LP  +      L L       N  T +P++L++   ++ +D+  N+++ LS
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDG-----NQFTLVPKELSNYKHLTLIDLSNNRISTLS 70

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N   ++ T L  LI S N L  +P      L  L  L LH N I  +P    +   +L+ 
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130

Query: 235 FYMGNN 240
             +G N
Sbjct: 131 LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYC 269
            L L  N+   +P  +S    L    + NN +S L  +    +++L TL L  N+L+   
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 270 VEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                    L +L L  N +S +P      ++ L  L +  NPL
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLS 278
            +P  I     + E Y+  N  + +P EL     L  +DL +N++        +   +L 
Sbjct: 24  VLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
            L LS N L  +PP     + +LR L L GN +  +
Sbjct: 82  TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           ++  L LS N ++ +PP       SL+ L L  N I   P+     LS+LS L +  NPL
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSI 103
            D+ +L L  N    + ++L N   LT++++S+N++S L       +  L +L +S+N +
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 104 MKIPDEI-GSATALVKFDCSSNQLKELP 130
             IP        +L       N +  +P
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVP 118

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 5e-16
 Identities = 52/274 (18%), Positives = 85/274 (31%), Gaps = 24/274 (8%)

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
            L   +  +   +  G   +I K  +L++L +    +     S +      +L    S L
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARI----PSRILFGALRVLGI--SGL 97

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-----WEAGEITKLDLS 388
            E        T      +          L+L  ++ +   + +     W    +  L ++
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 389 RNSIQELPPELSS-CASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLRQVP 443
           +        E      +L TL LS N                  +L  L L N  +    
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 444 SDG---FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQ 498
                       LQ LDLS+N +      P       L  L L    L++ P  +    +
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275

Query: 499 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 532
           L +LDLS N L   P     L  +  L L  N  
Sbjct: 276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 8e-15
 Identities = 52/249 (20%), Positives = 91/249 (36%), Gaps = 23/249 (9%)

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMN 368
           L+ + +    G    ++K L   L       A      L      L ++  +EL+LE + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLS--LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 369 LSA---IPSEIWEAGEITKLDLSRNSIQELPPELSSC-----ASLQTLILSRNKIKDWPD 420
           ++     P       ++  L+L   S       L+         L+ L +++    ++  
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 421 AILTSLSSLSCLKLDNNPLRQ----VPSDGFKDIPMLQILDLSYN-IASLPENPP--FSS 473
             +    +LS L L +NP       + +      P LQ+L L    + +         ++
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 474 LPHLQELYL-RMQLREAPTDI--LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 530
              LQ L L    LR+A          QL  L+LS   L+ +P+G      L+ LDLS N
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYN 284

Query: 531 NISALPPEL 539
            +   P   
Sbjct: 285 RLDRNPSPD 293

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 60/298 (20%), Positives = 99/298 (33%), Gaps = 45/298 (15%)

Query: 201 ETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSAL----PAELGKLSK 254
           E  G    L  L    +    +   + I    SL    +    + +        +  +S 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 255 LGTLDLHSNQLKEYC----VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L  L L + ++        +EA    L++L+L N S +     + ++    K  L    +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370
               S   +     +   L +                       L ++      E   +S
Sbjct: 157 AQAHSLNFSCEQVRVFPALST-----------------------LDLSDNPELGERGLIS 193

Query: 371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCA----SLQTLILSRNKIKDWPDAILTS- 425
           A+    +    +  L L    ++      S+ A     LQ L LS N ++D   A     
Sbjct: 194 ALCPLKFPT--LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 483
            S L+ L L    L+QVP         L +LDLSYN   L  NP    LP +  L L+
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYN--RLDRNPSPDELPQVGNLSLK 304

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 52/287 (18%), Positives = 86/287 (29%), Gaps = 63/287 (21%)

Query: 43  EAVDLQKLILAHNNI--EKLKEDLRNLPL-----LTVLNVSHNKLSELPAAIGELHMLKS 95
           +++ L++L +    I    L   LR L +     LT+ N+     +  P        L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           L++   S       +                    + L + L                  
Sbjct: 126 LNLRNVSWATRDAWL--------------------AELQQWLKPG--------------- 150

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-----GSLSRLI 210
                 +  L +        S   +  +  L+ L  S N   G    I          L 
Sbjct: 151 ------LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 211 RLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALPAELG--KLSKLGTLDLHSNQ 264
            L L    + +      +  +    L    + +N+L            S+L +L+L    
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 265 LKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           LK+  V       LSVLDLS N L   P    ++  +  L L GNP 
Sbjct: 265 LKQ--VPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 52/321 (16%), Positives = 79/321 (24%), Gaps = 60/321 (18%)

Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           F+C      EL    GR L     +           D+     + +L V   ++      
Sbjct: 28  FNCLGAADVELYGG-GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 179 LIA---SWTMLTELIASKNLLNGM---PETIGSLSRLIRLDLHQNRILSIPSSISGCC-- 230
                   + L EL      + G    P    +   L  L+L      +  + ++     
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 231 ---SLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQL------KEYCVEACQLRLSVL 280
               L    +          E       L TLDL  N                   L VL
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 281 DLSNNSLSGLPPEIGKMTTLRKLL----LTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L N  +         +   R  L    L+ N LR    +        L           
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL----------- 255

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                                    L+L    L  +P  +     ++ LDLS N +   P
Sbjct: 256 -----------------------NSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNP 290

Query: 397 PELSSCASLQTLILSRNKIKD 417
                   +  L L  N   D
Sbjct: 291 SPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            LNL N S       + +           W    L+ L +A  +      E +R  P L+
Sbjct: 125 ILNLRNVSWATRDAWLAELQQ--------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 72  VLNVSHNKLSELPAAI-----GELHMLKSLDVSFNSIMKIPDEIGSATA----LVKFDCS 122
            L++S N        I      +   L+ L +    +        +  A    L   D S
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 123 SNQLKELPSSLG--RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
            N L++   +        L+    S   +  +P+ L   +K+S LD+  N+L        
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP--SP 292

Query: 181 ASWTMLTELIASKNLL 196
                +  L    N  
Sbjct: 293 DELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 47  LQKLILAHNNIEKL----KEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSF 100
           LQ L L +  +E               L  L++SHN L +   A        L SL++SF
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 101 NSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150
             + ++P  + +   L   D S N+L   PS       + +     N   
Sbjct: 263 TGLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPFL 309

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           +L      IEK+   L  L     L +S N + ++ +++  +  L+ L +  N I KI +
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLD 166
               A  L +   S NQ+  L S + + +NL     SNN IT+  E   LA   K+  L 
Sbjct: 88  LDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 167 VEGNKLT 173
           + GN L 
Sbjct: 147 LAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.9 bits (156), Expect = 6e-12
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 162 MSKLDVEGNKLTVLS--NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
           M+K     + + +     +++A+     EL      +  M  T+ +L     L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV 279
             I SS+SG  +L    +G N +  +         L  L +  NQ+         + L V
Sbjct: 61  EKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119

Query: 280 LDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           L +SNN ++      ++  +  L  LLL GNPL        N  T      +  RLP
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL--YNDYKENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 6e-11
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 23/181 (12%)

Query: 342 STTKEDLI------TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395
           +TT +D I                 EL      +  + + +        L LS N+I+++
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Query: 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455
              LS   +L+ L L RN IK   + +     +L  L +  N +  +   G + +  L++
Sbjct: 64  SS-LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRV 119

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYL-------RMQLREAPTD-----ILRLQQLRIL 502
           L +S N I +  E    ++L  L++L L         +   A ++     + RL  L+ L
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

Query: 503 D 503
           D
Sbjct: 180 D 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.8 bits (140), Expect = 8e-10
 Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 50/155 (32%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  +L      I+++   LS+  + + L LS N I          +SSLS ++       
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--------EKISSLSGME------- 70

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLR 500
                       L+IL L  N+           + +L  +                  L 
Sbjct: 71  -----------NLRILSLGRNL--------IKKIENLDAV---------------ADTLE 96

Query: 501 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 535
            L +S N + S+  G + L +L  L +S+N I+  
Sbjct: 97  ELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW 130

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
             E+ K  +        L+     + ++ A +  L   K L +S N+I KI   +     
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMEN 71

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L       N +K++ +       L +   S N I SL   +     +  L         +
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY--------M 122

Query: 176 SNNLIASWTMLTELIASKNL 195
           SNN I +W  + +L A   L
Sbjct: 123 SNNKITNWGEIDKLAALDKL 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 5e-14
 Identities = 94/586 (16%), Positives = 172/586 (29%), Gaps = 174/586 (29%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           IL+    +   ++          +     + ++P +I     L   ++  + I+   D +
Sbjct: 21  ILSVF-EDAFVDNF---------DCKD--VQDMPKSI-----LSKEEI--DHIIMSKDAV 61

Query: 111 GSATALVKFDC----SSNQLKELPSSLGRCLN------LSDFKASNNCITSLPEDL---- 156
                L  F          +++    +   L       +S  K       S+   +    
Sbjct: 62  SGTLRL--FWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQ 115

Query: 157 -----ADCSKMSKLDVE-GNKLTVLSNNLIASWTMLTELIASKNL-LNGMP--------- 200
                 D    +K +V        L          L EL  +KN+ ++G+          
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 201 ETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE--FYMGNNALSALPAELGKLSKLG 256
           +   S     ++D    +I  L++       C+  E    M    L  +       S   
Sbjct: 169 DVCLSYKVQCKMD---FKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 257 -TLDLHSNQLKEYCVEACQLR-----LSVLD-LSNNSLSGLPPEIGKMTTLR-KLLLTGN 308
             + L  + ++       + +     L VL  + N        +      L  K+LLT  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWNAFNLSCKILLT-- 271

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG-- 366
              T    + +     L     + +  +  S   T  E    +   L    ++L  E   
Sbjct: 272 ---TRFKQVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 367 ---MNLSAIPSEI---------WEAGEITKLD-LSRNSIQELPPEL-----SSCA----- 403
                LS I   I         W+     KL  +  +S+  L P          +     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 404 ---SLQTL-ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ----- 454
                  L ++  + IK     ++  L   S ++                IP +      
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-------ISIPSIYLELKV 437

Query: 455 -----------ILDLSYNIA-SLPEN---PP------FSSLP-HLQ--ELYLRMQL-REA 489
                      I+D  YNI  +   +   PP      +S +  HL+  E   RM L R  
Sbjct: 438 KLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 490 PTDILR-LQQ-LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 533
             D  R L+Q +R    + N+  SI      L +L +L      I 
Sbjct: 497 FLD-FRFLEQKIRHDSTAWNASGSI------LNTLQQLKFYKPYIC 535

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREA 489
           L+L++N L+ +P   F  +  L  L LS N I SLP+   F  L  L  LYL   +L+  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-FDKLTKLTILYLHENKLQSL 91

Query: 490 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
           P  +  +L QL+ L L  N L+S+P+G F  LTSL ++ L  N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQ 510
             L+L  N + SLP    F  L  L +L L   Q++  P  +  +L +L IL L +N LQ
Sbjct: 31  TRLELESNKLQSLPHGV-FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 511 SIPEG-FKNLTSLTELDLSDNNISALP 536
           S+P G F  LT L EL L  N + ++P
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVP 116

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 463 ASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNL 519
            S+P   P S+      L L   +L+  P  +  +L QL  L LSQN +QS+P+G F  L
Sbjct: 20  TSVPTGIPSSA----TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75

Query: 520 TSLTELDLSDNNISALPP 537
           T LT L L +N + +LP 
Sbjct: 76  TKLTILYLHENKLQSLPN 93

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
            ++  L LE   L ++P  +++   ++TKL LS+N IQ LP  +      L  L L  NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++  P+ +   L+ L  L LD N L+ VP   F  +  LQ + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 19/111 (17%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
           RL+L  N++ S+P  +      L +  +  N + +LP  +  KL+KL  L LH N+L+  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
                 L         +L  L L  N L  +P  I  ++T+L+K+ L  NP
Sbjct: 91  ------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +LSL    + ++P  +++   ++T L L  N +Q LP  +      L+ L L  N++K 
Sbjct: 55  TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114

Query: 418 WPDAILTSLSSLSCLKLDNNP 438
            PD I   L+SL  + L  NP
Sbjct: 115 VPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 23/104 (22%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
           +L++E NKL  L + +    T LT+L  S+N +  +P+ +   L++L  L LH+N++ S+
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           P+ +                        KL++L  L L +NQLK
Sbjct: 92  PNGV----------------------FDKLTQLKELALDTNQLK 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 120 DCSSNQLKELPS---SLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVL 175
            C+S  L  +P+   S    L L      +N + SLP  + D  ++++KL +  N++  L
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
            + +    T LT L   +N L  +P  +   L++L  L L  N++ S+P
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 85/491 (17%), Positives = 150/491 (30%), Gaps = 128/491 (26%)

Query: 116 LVKFDCSSNQL-----KELPSSLGRC--LNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
           +   D    +L      EL   L +C  + L D   +      +   L     +++L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L             + + + + +             ++ +L L    +     + +G
Sbjct: 65  SNELGD------VGVHCVLQGLQTPS------------CKIQKLSLQNCCL-----TGAG 101

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-------CQLRLSVLD 281
           C  L+               L  L  L  L L  N L +  ++         Q RL  L 
Sbjct: 102 CGVLSS-------------TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 282 LSNNSLS-----GLPPEIGKMTTLRKLLLTGNPL-----RTLRSSLVNGPTPALLKYLRS 331
           L   SLS      L   +      ++L ++ N +     R L   L +  +P  L+ L+ 
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD--SPCQLEALK- 205

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGE-----ITKL 385
            L     +  +      +        + +EL+L    L  +  +E+          +  L
Sbjct: 206 -LESCGVTSDNCRD---LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 386 DLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLD 435
            +    I      +L   L +  SL+ L L+ N++ D       + +L     L  L + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 436 NNPLRQVPSDGFKDI-------PMLQILDLSYN---------IASLPENPPFSSLPHLQE 479
           +       +               L  L +S N         +      P       L+ 
Sbjct: 322 SCSFT---AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP----GSVLRV 374

Query: 480 LYLR---------MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNL--------TSL 522
           L+L            L      +L    LR LDLS N L     G   L          L
Sbjct: 375 LWLADCDVSDSSCSSLAAT---LLANHSLRELDLSNNCLG--DAGILQLVESVRQPGCLL 429

Query: 523 TELDLSDNNIS 533
            +L L D   S
Sbjct: 430 EQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 74/455 (16%), Positives = 146/455 (32%), Gaps = 80/455 (17%)

Query: 46  DLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDV 98
           D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N +     ++G    +         L+     + + L+L +   +      L   L  
Sbjct: 64  RSNEL----GDVG-VHCV------LQGLQTPSCKI-QKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 159 CSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSR 208
              + +L +  N L      +L   L+     L +L      L+      +   + +   
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 209 LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAELGKLSKLGT 257
              L +  N I       +   +    C L    + +  ++      L   +   + L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 258 LDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLL 305
           L L SN+L +  +            RL  L +    ++      L   +    +L++L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 306 TGNPL-----RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
            GN L     R L  +L+       L+ L   +     + A  +     +     +    
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQ--LESLW--VKSCSFTAACCSH---FSSVLAQNRFLL 344

Query: 361 ELSLEGMNLS-AIPSEIWEAGE-----ITKLDLSRNSI-----QELPPELSSCASLQTLI 409
           EL +    L  A   E+ +        +  L L+   +       L   L +  SL+ L 
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 410 LSRNKIKDW-----PDAILTSLSSLSCLKLDNNPL 439
           LS N + D       +++      L  L L +   
Sbjct: 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 8e-11
 Identities = 68/455 (14%), Positives = 132/455 (29%), Gaps = 114/455 (25%)

Query: 70  LTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSI-----MKIPDEIGSATALVKFDCS 122
           +  L++   +LS+      +  L   + + +    +       I   +    AL + +  
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 123 SNQL-----KELPSSLGRC------LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK 171
           SN+L       +   L         L+L +   +      L   L     + +L +  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 172 LT-----VLSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRI-- 219
           L      +L   L+     L +L      L+      +   + +      L +  N I  
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184

Query: 220 ---LSIPSSISGC-CSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCV 270
                +   +    C L    + +  ++      L   +   + L  L L SN+L +  +
Sbjct: 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244

Query: 271 EA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
                       RL  L +    ++      L   +    +L++L L GN L        
Sbjct: 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-------- 296

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
                              D  A    E L+    +L    + L ++  + +A       
Sbjct: 297 ------------------GDEGARLLCETLLEPGCQL----ESLWVKSCSFTAA------ 328

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLK 433
                               L+    L  L +S N+++D         +    S L  L 
Sbjct: 329 ------------CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 434 LDNNPLRQVPSDGFKDI-------PMLQILDLSYN 461
           L +  +          +         L+ LDLS N
Sbjct: 377 LADCDVS---DSSCSSLAATLLANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 59/353 (16%), Positives = 102/353 (28%), Gaps = 78/353 (22%)

Query: 231 SLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDL 282
            +    +    LS       L  L +   + L    L E   +           L+ L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
            +N L     ++G    L+ L      ++ L        T A    L S L         
Sbjct: 64  RSNELG----DVGVHCVLQGLQTPSCKIQKLSLQ-NCCLTGAGCGVLSSTLRTLP----- 113

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG------EITKLDLSRNSI---- 392
                          T +EL L    L     ++   G       + KL L   S+    
Sbjct: 114 ---------------TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 393 -QELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLKLDNNPLR----QV 442
            + L   L +    + L +S N I +         +  S   L  LKL++  +     + 
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 443 PSDGFKDIPMLQILDLSYN---------IASLPENPPFSSLPHLQELYLRM-QLREAPTD 492
                     L+ L L  N         +     +P       L+ L++    +      
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP----SSRLRTLWIWECGITAKGCG 274

Query: 493 IL-----RLQQLRILDLSQNSL-----QSIPEGFKN-LTSLTELDLSDNNISA 534
            L       + L+ L L+ N L     + + E        L  L +   + +A
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
            N  L  VP+     IP   Q L L+ N I  L     F  L +LQ+LY    +L   PT
Sbjct: 20  QNIRLASVPAG----IPTDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPT 74

Query: 492 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            +  +L QL  LDL+ N L+SIP G F NL SLT + L +N
Sbjct: 75  GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             ++ + + L+++P+ I    +  +L L+ N I +L P +     +LQ L  + NK+   
Sbjct: 15  TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           RL L+ N+I  +   +     +L + Y  +N L+A+P  +  KL++L  LDL+ N LK
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
           + L L+ N +  +  G F +L +L +L  + N ++A+P 
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            + +L  + N +  +P  +      L  L L+ N +K  P     +L SL+ + L NNP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/302 (16%), Positives = 85/302 (28%), Gaps = 57/302 (18%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSL 96
           ++   L  + I     + +   L     +  + +S N +       L   I     L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 97  DVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + S     ++ DEI      L++      +L          + LSD          L + 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT--------VRLSDNAFGPTAQEPLIDF 117

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
           L+  + +  L +  N L   +   IA    L EL  +K   N           L  +   
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNA--------PPLRSIICG 167

Query: 216 QNRI-----LSIPSSISGCCSLAEFYMGNN------ALSALPAELGKLSKLGTLDLHSNQ 264
           +NR+          +      L    M  N          L   L    +L  LDL  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 265 LKEYCVEA------CQLRLSVLDLSNNSL---------SGLPPEIGKMTTLRKLLLTGNP 309
                  A          L  L L++  L                 +   L+ L L  N 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF--SKLENIGLQTLRLQYNE 285

Query: 310 LR 311
           + 
Sbjct: 286 IE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 55/213 (25%)

Query: 360 KELSLEGMNLSAIPSEIWEAGE-----------ITKLDLSRNSI-----QELPPELSSCA 403
           +      +    +  EI EA             +  + LS N+      + L   LS   
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 404 SLQTLILSRNKIKD-------------WPDAILTSLSSLSCLKLDNNPLR----QVPSDG 446
            L+ L L  N +                 +    +   L  +    N L     +  +  
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 447 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQ 506
           F+   +L  + +  N               ++   +   L E    +   Q+L++LDL  
Sbjct: 183 FQSHRLLHTVKMVQN--------------GIRPEGIEHLLLEG---LAYCQELKVLDLQD 225

Query: 507 NSL-----QSIPEGFKNLTSLTELDLSDNNISA 534
           N+       ++    K+  +L EL L+D  +SA
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 9e-08
 Identities = 47/344 (13%), Positives = 104/344 (30%), Gaps = 87/344 (25%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNSLS-----GLPPEIGKM 297
           + + S +    L  + +     ++          +  + LS N++       L   I   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
             L     +      ++  +        L+ L   L +                   + +
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEA-----LRLLLQALLKC-------------PKLHTVRL 101

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--------------LPPELSSCA 403
           +             +   + +   +  L L  N +                +  +  +  
Sbjct: 102 SDNAFGPTAQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 404 SLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPML 453
            L+++I  RN++++     W      S   L  +K+  N +R      +  +G      L
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 454 QILDLSYN---------IASLPENPPFSSLPHLQELYLR---------MQLREAPTDILR 495
           ++LDL  N         +A         S P+L+EL L            + +A + +  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIA-----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 496 LQQLRILDLSQNSL-----QSIPEGFK-NLTSLTELDLSDNNIS 533
              L+ L L  N +     +++       +  L  L+L+ N  S
Sbjct: 274 -IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 57/365 (15%), Positives = 100/365 (27%), Gaps = 100/365 (27%)

Query: 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196
            +L     +     S+   L +   + ++ + GN +   +   ++               
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS--------------- 53

Query: 197 NGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAELGKLSKL 255
               E I S   L   +        +   I      L +              L K  KL
Sbjct: 54  ----ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ-------------ALLKCPKL 96

Query: 256 GTLDLHSNQLKEYCVEAC------QLRLSVLDLSNNSLS--------------GLPPEIG 295
            T+ L  N       E           L  L L NN L                +  +  
Sbjct: 97  HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK 156

Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355
               LR ++   N L        NG      K  +S                   +   +
Sbjct: 157 NAPPLRSIICGRNRLE-------NGSMKEWAKTFQS-----------------HRLLHTV 192

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASLQTLIL 410
            +    +  EG+    +   +    E+  LDL  N+        L   L S  +L+ L L
Sbjct: 193 KMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251

Query: 411 SRNKIKD-WPDAILTSL-----SSLSCLKLDNNPLRQVPSDGFKDI--------PMLQIL 456
           +   +      A++ +        L  L+L  N +     D  + +        P L  L
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE---LDAVRTLKTVIDEKMPDLLFL 308

Query: 457 DLSYN 461
           +L+ N
Sbjct: 309 ELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 47/300 (15%), Positives = 83/300 (27%), Gaps = 71/300 (23%)

Query: 3   RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNI----- 57
             + + +       S+     V +E+ +      +     +   L  + L+ N       
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQ 111

Query: 58  EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM---------LKSLDVSFNSI 103
           E L + L     L  L + +N L       +  A+ EL +         L+S+    N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 104 -----MKIPDEIGSATALVKFDCSSNQLKE------LPSSLGRCLNLSDFKASNNCIT-- 150
                 +      S   L       N ++       L   L  C  L      +N  T  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 151 ---SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207
              +L   L     + +L +    L+      +          A   L N          
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--------AFSKLEN---------I 274

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            L  L L  N I      +    +L                  K+  L  L+L+ N+  E
Sbjct: 275 GLQTLRLQYNEI-----ELDAVRTLKT------------VIDEKMPDLLFLELNGNRFSE 317

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 38/101 (37%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRM-QLREAPT 491
               L  VP+     IP   Q+L L  N I  L     F  L  L  L L   QL   P 
Sbjct: 17  SGKSLASVPTG----IPTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPA 71

Query: 492 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
            +  +L QL  L L+ N L+SIP G F NL SLT + L +N
Sbjct: 72  GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             +   G +L+++P+ I        L L  N I +L P +      L  L L  N++   
Sbjct: 12  TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 463 ASLPENPPFSSLPHLQELYLRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNL 519
           AS+P   P +     Q LYL   Q+ +    +  RL QL  LDL  N L  +P G F  L
Sbjct: 22  ASVPTGIPTT----TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77

Query: 520 TSLTELDLSDNNISALP 536
           T LT+L L+DN + ++P
Sbjct: 78  TQLTQLSLNDNQLKSIP 94

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 500 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
           ++L L  N +  +  G F  LT LT LDL +N ++ LP 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA 71

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
            L L+ N+I  +   +      L    + NN L+ LPA +  KL++L  L L+ NQLK
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           ++T+LDL  N +  LP  +      L  L L+ N++K  P     +L SL+ + L NNP
Sbjct: 55  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.0 bits (155), Expect = 3e-11
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           + L  +R+   +    L    +L  L +   + ++      L  L  L  L +  + LR 
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           V  D F   P L  L+LS+N + SL        L  LQEL L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWK-TVQGLS-LQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 63.2 bits (153), Expect = 5e-11
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 463 ASLPENPP-FSSLPHLQELYLR--MQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 517
               ++        +L ELY+     L+      LR L +LR L + ++ L+ +    F 
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 518 NLTSLTELDLSDNNISALPPELVS 541
               L+ L+LS N + +L  + V 
Sbjct: 78  FTPRLSRLNLSFNALESLSWKTVQ 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 9e-11
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAE-LGKLSKLGTLDLHSNQLKEYC 269
           L   ++  L     + G  +L E Y+     L  L    L  L +L  L +  + L+   
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--F 70

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           V         RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 60.5 bits (146), Expect = 4e-10
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQI 455
           P+         L  +R+   D     L    +L+ L ++N   L+ +     + +  L+ 
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 514
           L +  + +  +  +  F   P L  L                      +LS N+L+S+  
Sbjct: 61  LTIVKSGLRFVAPDA-FHFTPRLSRL----------------------NLSFNALESLSW 97

Query: 515 GFKNLTSLTELDLSDN 530
                 SL EL LS N
Sbjct: 98  KTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 46  DLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
           +L +L + +   ++ L   DLR L  L  L +  + L  +   A      L  L++SFN+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 103 IMKIPDEIGSATALVKFDCSSNQL 126
           +  +  +     +L +   S N L
Sbjct: 92  LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 360 KELSLEGMN-LSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
            EL +E    L  +    +   GE+  L + ++ ++ + P+       L  L LS N ++
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 417 DWPDAILTSLSSLSCLKLDNNPLR 440
                 +  L SL  L L  NPL 
Sbjct: 94  SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 29/156 (18%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L                  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE----------------- 48

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAELGKL 252
                    +  L  L  L + ++ +  +          L+   +  NAL +L  +  + 
Sbjct: 49  ------LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             L  L L  N L   C  +C LR            
Sbjct: 103 LSLQELVLSGNPLH--C--SCALRWLQRWEEEGLGG 134

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 23/161 (14%)

Query: 346 EDLITMATRLS--VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
            +LI  A + +  V  +EL L G  +  I +      +   +D S N I++L        
Sbjct: 6   AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLR 64

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI 462
            L+TL+++ N+I    + +  +L  L+ L L NN L ++   D    +  L  L +  N 
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN- 123

Query: 463 ASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILD 503
                  P ++  H + LY+          I ++ Q+R+LD
Sbjct: 124 -------PVTNKKHYR-LYV----------IYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.3 bits (131), Expect = 9e-09
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 4   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FP 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPE--DLADCSKMSKLDVE 168
               L     ++N++  +   L + L +L++   +NN +  L +   LA    ++ L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 169 GNKLTVLSN 177
            N +T   +
Sbjct: 122 RNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 11/156 (7%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           + L+   I++   + ++    + L L   KI    + +  +L     +   +N +R++  
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-- 57

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQ---LRI 501
           DGF  +  L+ L ++ N           +LP L EL L         D+  L     L  
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 502 LDLSQNSLQSIPE----GFKNLTSLTELDLSDNNIS 533
           L + +N + +           +  +  LD     + 
Sbjct: 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +  R   LDL   +I  I +  +           +N +  L      L +L TL +++N+
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 265 LK---EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
           +    E   +A    L+ L L+NNSL  L     +  + +L  L +  NP+
Sbjct: 76  ICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
           +   I    +   +  +  +LD+ G K+ V+ N L A+      +  S N +  + +   
Sbjct: 5   TAELIEQAAQ-YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L RL  L ++ NRI  I   +      L E  + NN+L  L     L  L  L  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 262 SN 263
            N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             AV  ++L L    I  ++     L     ++ S N++ +L      L  LK+L V+ N
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN 74

Query: 102 SIMKIPDEIGSA-TALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
            I +I + +  A   L +   ++N L EL     L    +L+      N +T+   
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILR-LQQLRILDLSQNSLQSIP 513
           ++ L+  +  + +   +++    +EL LR        ++   L Q   +D S N ++ + 
Sbjct: 1   MVKLTAEL--IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL- 57

Query: 514 EGFKNLTSLTELDLSDNNISALPPEL 539
           +GF  L  L  L +++N I  +   L
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGL 83

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT 491
           +KL    + Q  +  + +    + LDL      + EN   ++L     +           
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLD 58

Query: 492 DILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 535
               L++L+ L ++ N +  I EG  + L  LTEL L++N++  L
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + ++   I +   +  +A    + D    ++  + +             S+N I  L + 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLD 213
                ++  L V  N++  +   L  +   LTELI + N L  + +   + SL  L  L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 214 LHQNRILSIP 223
           + +N + +  
Sbjct: 120 ILRNPVTNKK 129

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 53.8 bits (128), Expect = 6e-08
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 20/176 (11%)

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
           W   +  + ++S     +L P L +   L  L +              +L SL  +    
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE-IISGG 204

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN---------IASLPENPPFSSLPHLQELYLRM--- 484
            P   V      D+P L+ L L            +            P+L+ L +     
Sbjct: 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264

Query: 485 --QLREAPTDILRLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS 533
              + E   +   L QL  +D+S   L     + + +    +  L  +++  N +S
Sbjct: 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 25/249 (10%), Positives = 66/249 (26%), Gaps = 46/249 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              ++         +             +S  +  +L   +  + +L +L +   + + I
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                              LK L         +      ++ +  +    +D   + KL 
Sbjct: 188 GK------------KPRPNLKSL--------EIISGGLPDSVVEDILG--SDLPNLEKLV 225

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--- 223
           +         +  +  +  L                      L  L +      ++    
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSK--------------DRFPNLKWLGIVDAEEQNVVVEM 271

Query: 224 -SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277
                    L    +    L+      L   + K+  L  +++  N L +   +  Q  L
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

Query: 278 SV-LDLSNN 285
            + +D+S++
Sbjct: 332 PMKIDVSDS 340

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           +V    L     N   I     E   +  L L    +  +   L     L+ L LS N+I
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRI 83

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--F 471
               D +   L +L+ L L  N L+ + + +  K +  L+ LDL    + +L +     F
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 472 SSLPHLQEL 480
             LP L  L
Sbjct: 144 KLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 29/157 (18%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441
           + +D+ R    EL     + A+++ L+L   K  D   + +     +L  L L N  L  
Sbjct: 6   SGMDMKRRIHLEL--RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS 63

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRI 501
           V       +P L+ L+LS N      +     LP+L  L                     
Sbjct: 64  V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL--------------------- 100

Query: 502 LDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALP 536
            +LS N L+ I      K L  L  LDL +  ++ L 
Sbjct: 101 -NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 1/85 (1%)

Query: 456 LDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 515
           +D+   I     N   +++  L     +    +          L  L L    L S+   
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN 66

Query: 516 FKNLTSLTELDLSDNNISALPPELV 540
              L  L +L+LS+N I      L 
Sbjct: 67  LPKLPKLKKLELSENRIFGGLDMLA 91

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L    +N  K++        L  L++ +  L  + + + +L  LK L++S N I    D 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM 89

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N+LK++ +   L +   L      N  +T+L +
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
           V+L+ L L +  +  +  +L  LP L  L +S N++      + E L  L  L++S N +
Sbjct: 49  VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 104 MKIPD 108
             I  
Sbjct: 108 KDIST 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D   +   ++       +NL      N  + S+  +L    K+ KL++  N++    + L
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N L  +     +  L  L  LDL    + ++ 
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 28/127 (22%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
             +    +    A+   +  L +    L  +SN                         + 
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------------------------LP 68

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L +L +L+L +NRI      ++    +L    +  N L  +     L KL  L +LDL 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 262 SNQLKEY 268
           + ++   
Sbjct: 129 NCEVTNL 135

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK- 266
           + + LD  ++    +         L      N  L+++ A L KL+KL  L+L  N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 267 --EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
             E   E C   L+ L+LS N +  L     + K+  L+ L L    +
Sbjct: 79  GLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 360 KELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           KEL L+    +    E    E  E+  L      +  +   L     L+ L LS N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSG 78

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPE--NPPFSS 473
             + +     +L+ L L  N ++ + + +  K +  L+ LDL    + +L +     F  
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL 138

Query: 474 LPHLQEL 480
           LP L  L
Sbjct: 139 LPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 401 SCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
           + + ++ L+L  ++  +   + +      L  L   N  L  +       +  L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 460 YNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQ---LRILDLSQNSLQSIPE-- 514
            N  S          P+L  L L     +  + I  L++   L+ LDL    + ++ +  
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 515 --GFKNLTSLTELD 526
              FK L  LT LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 473 SLPHLQELYL---RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 529
           +   ++EL L   R    +        ++L  L      L SI      L  L +L+LSD
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73

Query: 530 NNISALPPEL 539
           N +S     L
Sbjct: 74  NRVSGGLEVL 83

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
            +L+ L   +  +  +  +L  L  L  L +S N++S     + E    L  L++S N I
Sbjct: 42  EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 104 MKIPD 108
             +  
Sbjct: 101 KDLST 105

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L  + +N  KL+        L  L+  +  L+ + A + +L+ LK L++S N +    + 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N++K+L +   L +  NL      N  +T+L +
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D S +   +L         L      N  +TS+  +L   +K+ KL++  N+++     L
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N +  +     +  L  L  LDL    + ++ 
Sbjct: 84  AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 43/191 (22%)

Query: 382 ITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDWP-----DAILTSLSSLS 430
           IT LDL  N              S+  AS+ +L L  N +           +    ++++
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 431 CLKLDNNPLR----QVPSDGFKDIP-MLQILDLSYN---------IASLPENPPFSSLPH 476
            L L  N L        +     IP  +  LDLS N         +A +  + P     H
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP----NH 226

Query: 477 LQELYLRM-QLREAPTDIL-----RLQQLRILDLSQNSL--------QSIPEGFKNLTSL 522
           +  L L +  L     + L      L+ L+ + L  + +        +++   F N+  +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 523 TELDLSDNNIS 533
             +D +   I 
Sbjct: 287 ILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 65/401 (16%), Positives = 118/401 (29%), Gaps = 101/401 (25%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKSLDVSFNSIMKIPDEIGSA 113
           ++E       +T L++S N L       L  A       + SL++S NS+        ++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-----NS 68

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKL 172
             LV+       L  +P+++   LNLS    S      L + LA     ++ LD+  N  
Sbjct: 69  DELVQI------LAAIPANV-TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 173 T-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--------LIRLDLHQNRI 219
           +                 +T L    N L    ++   L +        +  L+L  N +
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------- 272
                +   C  LA+F                 + + +LDL +N L              
Sbjct: 180 -----ASKNCAELAKFLASIP------------ASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 273 CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
               +  L+L  N L G     L      +  L+ + L  + +           +    K
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQCK 274

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----GEI 382
            L +  P                    +    KE+             I        G+ 
Sbjct: 275 ALGAAFPNI-------------QKIILVDKNGKEIHPSHSIP------ISNLIRELSGKA 315

Query: 383 TKLDLSRNSI------QELPPELSSCASLQTLILSRNKIKD 417
               L    +      Q    +L+    L+  I +   + +
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 63/374 (16%), Positives = 119/374 (31%), Gaps = 77/374 (20%)

Query: 201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL 260
           E       +  LDL  N +            L + +                + + +L+L
Sbjct: 16  EFTSIPHGVTSLDLSLNNL-----YSISTVELIQAFANTP------------ASVTSLNL 58

Query: 261 HSNQLKEYCVEA-------CQLRLSVLDLSNNSLS--GLPPEIGKM-----TTLRKLLLT 306
             N L     +            ++ L+LS N LS      E+ K       T+  L L 
Sbjct: 59  SGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD-ELVKTLAAIPFTITVLDLG 117

Query: 307 GNPL-----RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
            N          + +  N P    +  L   L  N+    S+  ++LI +   +      
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPAS--ITSLN--LRGNDLGIKSS--DELIQILAAIPANVNS 171

Query: 362 LSLEGMNLSAIP-SEIWEAGE-----ITKLDLSRNSI-----QELPPELSSC-ASLQTLI 409
           L+L G NL++   +E+ +        +T LDLS N +      EL    SS    + +L 
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 410 LSRNKIKDWP----DAILTSLSSLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDL 458
           L  N +          +  SL  L  + LD + ++ +  +  K +         + ++D 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 459 SYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKN 518
           +            S    +  L   +  +    D+  L    ++   ++      E    
Sbjct: 292 NGK------EIHPSHSIPISNLIRELSGK---ADVPSLLNQCLIFAQKHQTNI--EDLNI 340

Query: 519 LTSLTELDLSDNNI 532
              L E   +   +
Sbjct: 341 PDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 60/288 (20%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPL-LTVLNVSHNKLSE-----LPAAIGELH-MLK 94
           +  L L+ NN+      +L +   N P  +T LN+S N L       L   +  +   + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           SL++S N +        S+  LVK       L  +P ++   L+L     S+   +   +
Sbjct: 84  SLNLSGNFL-----SYKSSDELVKT------LAAIPFTI-TVLDLGWNDFSSKSSSEFKQ 131

Query: 155 DLADC-SKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR 208
             ++  + ++ L++ GN L       L   L A    +  L    N L    +    L++
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA--SKNCAELAK 189

Query: 209 --------LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAEL 249
                   +  LDL  N +       +    S     +    +  N L       L    
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLS 288
             L  L T+ L  + +K    E C+          ++ ++D +   + 
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 41/194 (21%)

Query: 382 ITKLDLSRNSI-----QELPPELSSC-ASLQTLILSRNKI-----KDWPDAILTSLSSLS 430
           +T L+LS N +      EL   L++   ++  L L  N        ++  A     +S++
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 431 CLKLDNNPLR----QVPSDGFKDIPM-LQILDLSYN---------IASLPENPPFSSLPH 476
            L L  N L              IP  +  L+L  N         +A    + P      
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP----AS 197

Query: 477 LQELYLRM-QLREAPTDIL------RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTE 524
           +  L L    L       L          +  L+L  N L     +++     +L  L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 525 LDLSDNNISALPPE 538
           + L  + +  +  E
Sbjct: 258 VYLDYDIVKNMSKE 271

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 399 LSSCASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI---- 450
           ++ C  ++TL++  +   +    W   +    +SL  L        ++     + I    
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 451 PMLQILDLSYNIASLPENPPFSSLPHLQEL-----YLRMQLREAPTDILRLQQLRILDLS 505
             L  + +  +   L     F +  +L+E         + + E   +++  ++L  L LS
Sbjct: 220 RSLVSVKVG-DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 506 QNSLQSIPEGFKNLTSLTELDLSDNNIS 533
                 +P  F     + +LDL    + 
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLE 306

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 76/513 (14%), Positives = 147/513 (28%), Gaps = 88/513 (17%)

Query: 40  KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-----LHMLK 94
                    +L     N+  L   L+  P   + N+                   L  LK
Sbjct: 58  ALCYTATPDRLSRRFPNLRSL--KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLK 115

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           S+       M + D       L K       L+ L   L +C   +           L  
Sbjct: 116 SVHFRR---MIVSDL--DLDRLAKARADD--LETL--KLDKCSGFTT--------DGLLS 158

Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDL 214
            +  C K+  L +E +  +      +     L +   S  +LN               + 
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHE---LAQHNTSLEVLN-----------FYMTEF 204

Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNA---LSALPAELGKLSKLGTLDLHSNQLKEYCVE 271
            +     + +    C SL    +G+     L         L +     L+ +        
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264

Query: 272 ACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                 +L  L LS    + +P        +RKL L    L T     +    P L + L
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL-EVL 323

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389
            +R              ++I       +      L+ + +     E  +  E  +  +S+
Sbjct: 324 ETR--------------NVIGDRGLEVLAQYCKQLKRLRIERGADE--QGMEDEEGLVSQ 367

Query: 390 NSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
             +  L      C  L+ + +  + I +   ++I T L +L   +L      +  +D   
Sbjct: 368 RGLIAL---AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDI------LRLQQLRIL 502
           D  +  +L                    L+     ++     TD+           +R +
Sbjct: 425 DNGVRSLL---------------IGCKKLRRFAFYLRQGGL-TDLGLSYIGQYSPNVRWM 468

Query: 503 DLS--QNSLQSIPEGFKNLTSLTELDLSDNNIS 533
            L     S + + E  +   +L +L++     S
Sbjct: 469 LLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 499 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 530
              L L+ N+L ++P G    L +L    L  N
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 59/375 (15%), Positives = 102/375 (27%), Gaps = 72/375 (19%)

Query: 195 LLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLS 253
           +L  +   I +L  L      + ++  +    +     L   +               LS
Sbjct: 14  VLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYE-FQNQRFSAEVLS 72

Query: 254 KLGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLS--GLPPEIGKMTTLRKLL 304
            L  L+L   ++               +  L  ++L++  L   GL   +      RKL 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N L            P   K LR  L  ++                ++      L L
Sbjct: 133 LQLNSL-----------GPEACKDLRDLLLHDQ---------------CQI----TTLRL 162

Query: 365 EGMNLS-----AIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASLQTLILSRNK 414
               L+      +   +     +T L L    +     + L  +L     LQ L ++ N 
Sbjct: 163 SNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222

Query: 415 IKDWP----DAILTSLSSLSCLKLDNNPLR----QVPSDGFKDIPMLQILDLSYNIASLP 466
             D              SL  L L  N L     QV  D          + +S       
Sbjct: 223 AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT----- 277

Query: 467 ENPPFSS--LPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL-----QSIPEGFKNL 519
           E    S      L E+  R         + R  +L + DL  +           +  +  
Sbjct: 278 EGTAVSEYWSVILSEV-QRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVE 336

Query: 520 TSLTELDLSDNNISA 534
             +  L     +  +
Sbjct: 337 GEVRALLEQLGSSGS 351

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 18/152 (11%)

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLS----SLSCLKLDNNPLRQVPSDGFKDI---- 450
            ++C +L+ L L  + + D     L+       SL  L +      +V     + +    
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRC 210

Query: 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDIL--------RLQQLRIL 502
           P L+ L L+  +            P L+EL       E   D+           ++LR L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 503 DLSQN-SLQSIPEGFKNLTSLTELDLSDNNIS 533
               +     +P  +   + LT L+LS   + 
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 381 EITKLDLSRN---SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLD 435
           E+  L+LS N    + ++   +    +L+ L LS N++K   +  L  +  L    L LD
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLD 228

Query: 436 NNPLRQVPSDG-------FKDIPMLQILD 457
            N L     D         +  P L  LD
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	542
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.98
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.62
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.71
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.19
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.0
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.87
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.9
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.73
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	88.26

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.1e-49  Score=408.71  Aligned_cols=471  Identities=21%  Similarity=0.222  Sum_probs=370.8

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (542)
                      +.+++++++++++|.++.               +++++|++++|.+..++. +|.++++|++|++++|.++.+ |.+|.+
T Consensus        14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~   78 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG   78 (606)
T ss_dssp             TEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc
Confidence            579999999999998774               469999999999997764 899999999999999999987 558999


Q ss_pred             CCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccc--cCCcccccCCCccEE
Q 009136           90 LHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSKL  165 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L  165 (542)
                      +++|++|++++|.++.+ |..|.++++|++|++++|.+..++ ..+.++++|++|++++|.+.  .+|..++.+++|++|
T Consensus        79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A           79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            99999999999999977 778999999999999999998776 67899999999999999988  478889999999999


Q ss_pred             EccCCcccccchhhhhccccCc----EEEcCCcccCccccccCCCCcccEEEccCCCCc--cCCCC--------------
Q 009136          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSS--------------  225 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~--------------  225 (542)
                      ++++|.+..+....++.+.+++    ++++++|.++.++.......+|+.+++++|.+.  ..+..              
T Consensus       159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~  238 (606)
T 3vq2_A          159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL  238 (606)
T ss_dssp             ECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred             EccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence            9999999988877777777665    799999999888766555568999999888653  11111              


Q ss_pred             ------------------------------------------CcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCC
Q 009136          226 ------------------------------------------ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (542)
Q Consensus       226 ------------------------------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~  263 (542)
                                                                +..+++|+.++++++.+..+| .+..+++|++|++++|
T Consensus       239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n  317 (606)
T 3vq2_A          239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC  317 (606)
T ss_dssp             ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESC
T ss_pred             cccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccc
Confidence                                                      344556666666666666555 5556666666666666


Q ss_pred             cCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCcccccc
Q 009136          264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (542)
Q Consensus       264 ~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (542)
                      .+..++.. ....|+.+++++|..... ..+..+++|+.+++++|.+......                           
T Consensus       318 ~l~~lp~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~---------------------------  368 (606)
T 3vq2_A          318 QLKQFPTL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCC---------------------------  368 (606)
T ss_dssp             CCSSCCCC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSSCEEEEEEC---------------------------
T ss_pred             cCcccccC-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCCccCCCcch---------------------------
Confidence            66555533 334466666666632221 1344566666666666655433100                           


Q ss_pred             chhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChh
Q 009136          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA  421 (542)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~  421 (542)
                            .......+.+++++++++.+..++..+..+++|++|++++|.+..++.  .+..+++|++|++++|.+++..+.
T Consensus       369 ------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          369 ------SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             ------CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             ------hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence                  011223467889999999888888778888999999999998877543  678889999999999998888777


Q ss_pred             hhhCCCCCcEEEccCCCCcc-cCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccC-chhhhcCCC
Q 009136          422 ILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQ  498 (542)
Q Consensus       422 ~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~l~~~~~  498 (542)
                      .+..+++|++|++++|++.+ +.+..+..+++|++|++++|+++...+..+..+++|++|++ .+.+..+ |..+..+++
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence            88889999999999998876 34566888999999999999998888888889999999999 6667655 777888999


Q ss_pred             CCEEeCCCCcccccCccccCCC-CCCEEECCCCcCC
Q 009136          499 LRILDLSQNSLQSIPEGFKNLT-SLTELDLSDNNIS  533 (542)
Q Consensus       499 L~~L~l~~~~l~~l~~~l~~~~-~L~~L~l~~~~l~  533 (542)
                      |+.|++++|+++.+|..+..++ +|+.|++++|++.
T Consensus       523 L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             CCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence            9999999999998888888887 5999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9e-49  Score=416.57  Aligned_cols=510  Identities=29%  Similarity=0.321  Sum_probs=346.0

Q ss_pred             HHHHHHhhceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHh---hcCCCCCcEEEcCCC
Q 009136            4 ILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KED---LRNLPLLTVLNVSHN   78 (542)
Q Consensus         4 ~~~~~~~l~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~---l~~~~~L~~L~l~~~   78 (542)
                      .+..++++++|+++++.+. .+|..++..            +++|++|++++|.+... +..   +.++++|++|++++|
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLK------------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSSCCSCCC------------CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             HHhCCCCCCEEECcCCccCCcCCHHHhcc------------CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence            4667788999999999876 344433222            67788888888888743 334   677788888888877


Q ss_pred             CCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCC-cCCccccCCCCCCeEEccCCccccCCcccc
Q 009136           79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLA  157 (542)
Q Consensus        79 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~  157 (542)
                      .+.... .+..+++|++|++++|.+...++.+.++++|++|++++|.+. .+|..+..+++|++|++++|.+....... 
T Consensus       189 ~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-  266 (768)
T 3rgz_A          189 KISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-  266 (768)
T ss_dssp             EEESCC-BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-
T ss_pred             cccccC-CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-
Confidence            766432 236677777777777777754334777777777777777776 45566777777777777777766332222 


Q ss_pred             cCCCccEEEccCCccc-ccchhhhhccccCcEEEcCCcccC-ccccccCCCCcccEEEccCCCCc-cCCCC-CcCCCCCc
Q 009136          158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSS-ISGCCSLA  233 (542)
Q Consensus       158 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~-~~~~~~L~  233 (542)
                      .+++|++|++++|.+. .++......+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .+|.. +..+++|+
T Consensus       267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~  346 (768)
T 3rgz_A          267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK  346 (768)
T ss_dssp             CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred             ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence            5666777777766665 333332233466777777766664 45566666666777777766665 45543 56666667


Q ss_pred             EEEcCCCcCc-ccchhccCCC-CccEEEcCCCcCccc-chhhh---cccccEEEccCCCCCC-CChhhcCcCCCcEEEcC
Q 009136          234 EFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLKEY-CVEAC---QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLT  306 (542)
Q Consensus       234 ~l~l~~~~~~-~~~~~~~~~~-~L~~L~l~~~~i~~~-~~~~~---~~~L~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~  306 (542)
                      +|++++|.+. .+|..+..++ +|++|++++|.+... +....   ...|+.+++++|.+++ +|..+..+++|+.|+++
T Consensus       347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  426 (768)
T 3rgz_A          347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS  426 (768)
T ss_dssp             EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred             EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence            7777666665 5566555555 666666666665532 22211   1236666666665553 55556666666666666


Q ss_pred             CCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC-CCCccccccCCccEE
Q 009136          307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKL  385 (542)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L  385 (542)
                      +|.+.......+...         ..+..........  ...........++++++++++|.+. .+|..+..+++|++|
T Consensus       427 ~N~l~~~~p~~l~~l---------~~L~~L~L~~n~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          427 FNYLSGTIPSSLGSL---------SKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             SSEEESCCCGGGGGC---------TTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             CCcccCcccHHHhcC---------CCCCEEECCCCcc--cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence            665543221111100         0000000000000  0000011223467889999999887 677788888999999


Q ss_pred             ECCCCccc-ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcc-cCC-------------------
Q 009136          386 DLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPS-------------------  444 (542)
Q Consensus       386 ~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~-------------------  444 (542)
                      ++++|.++ .+|.++..+++|++|++++|.+++..+..+..+++|++|++++|++.. ++.                   
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            99999887 578888889999999999999987777778899999999999887652 211                   


Q ss_pred             --------------------------------------------------CccCCCCCCceEecCCCcCCCCCCCCCCCC
Q 009136          445 --------------------------------------------------DGFKDIPMLQILDLSYNIASLPENPPFSSL  474 (542)
Q Consensus       445 --------------------------------------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  474 (542)
                                                                        ..+..+++|+.|++++|++++..|..++.+
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  655 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM  655 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence                                                              124456789999999999999899999999


Q ss_pred             chhHHHHH-hhccc-cCchhhhcCCCCCEEeCCCCccc-ccCccccCCCCCCEEECCCCcCC-cCCCC
Q 009136          475 PHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPE  538 (542)
Q Consensus       475 ~~L~~L~l-~~~~~-~~~~~l~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~-~lp~~  538 (542)
                      ++|+.|++ .+.+. .+|..++.+++|+.||+++|+++ .+|..+..+++|+.|++++|+++ .+|+.
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            99999999 77776 88999999999999999999998 67999999999999999999998 46653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4.6e-49  Score=418.84  Aligned_cols=510  Identities=26%  Similarity=0.327  Sum_probs=410.4

Q ss_pred             HHHHHhhceeeccCCccc-ccch--hhhhccccCCCCCceeeecCCcEEEcCCCccc-chhHhh-cCCCCCcEEEcCCCC
Q 009136            5 LKAARTSGSLNLSNRSLR-DVPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDL-RNLPLLTVLNVSHNK   79 (542)
Q Consensus         5 ~~~~~~l~~l~l~~~~l~-~~~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l-~~~~~L~~L~l~~~~   79 (542)
                      +..++++++||++++.+. .+|.  .+..             +++|++|++++|.+. .+|..+ .++++|++|++++|.
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-------------l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  162 (768)
T 3rgz_A           96 FKCSASLTSLDLSRNSLSGPVTTLTSLGS-------------CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS  162 (768)
T ss_dssp             CCCCTTCCEEECCSSEEEEEGGGGGGGGG-------------CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred             hccCCCCCEEECCCCcCCCcCCChHHHhC-------------CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence            456688999999999987 4555  4433             789999999999887 445444 789999999999999


Q ss_pred             CCcc-hHh---hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccc-cCCc
Q 009136           80 LSEL-PAA---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPE  154 (542)
Q Consensus        80 ~~~l-~~~---~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~  154 (542)
                      +... +..   +.++++|++|++++|.+..... +..+++|++|++++|.+......+.++++|++|++++|.+. .++.
T Consensus       163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  241 (768)
T 3rgz_A          163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR  241 (768)
T ss_dssp             CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred             cCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence            9865 334   7899999999999999886543 38899999999999999865555999999999999999998 5677


Q ss_pred             ccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccC-ccccccCCC-CcccEEEccCCCCc-cCCCCCcCCCC
Q 009136          155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCCS  231 (542)
Q Consensus       155 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~-~~L~~L~l~~~~~~-~~~~~~~~~~~  231 (542)
                      .+..+++|++|++++|.+....+.  ..+++|++|++++|.+. .+|..+... ++|+.|++++|.+. .+|..+..+++
T Consensus       242 ~l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          242 AISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             HTTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             HHhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            899999999999999998754443  28899999999999997 788777665 99999999999988 67888999999


Q ss_pred             CcEEEcCCCcCc-ccchh-ccCCCCccEEEcCCCcCc-ccchhhhc--ccccEEEccCCCCCC-CChhhcC--cCCCcEE
Q 009136          232 LAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEACQ--LRLSVLDLSNNSLSG-LPPEIGK--MTTLRKL  303 (542)
Q Consensus       232 L~~l~l~~~~~~-~~~~~-~~~~~~L~~L~l~~~~i~-~~~~~~~~--~~L~~l~l~~~~l~~-l~~~l~~--~~~L~~L  303 (542)
                      |+.|++++|.+. .+|.. +..+++|++|++++|.++ .++.....  ..|+.+++++|.+++ ++..+..  +++|+.|
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            999999999998 77765 899999999999999987 44444433  269999999998875 5555555  7899999


Q ss_pred             EcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC-CCCccccccCCc
Q 009136          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEI  382 (542)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L  382 (542)
                      ++++|.+.......+...         ..+...........  ..........++++++++++|.+. .+|..+..+++|
T Consensus       400 ~L~~n~l~~~~p~~l~~l---------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  468 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNC---------SELVSLHLSFNYLS--GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL  468 (768)
T ss_dssp             ECCSSEEEEECCGGGGGC---------TTCCEEECCSSEEE--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             ECCCCccccccCHHHhcC---------CCCCEEECcCCccc--CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence            999999874332221110         00111111110000  001112233468999999999988 788888889999


Q ss_pred             cEEECCCCccc-ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136          383 TKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (542)
Q Consensus       383 ~~L~l~~~~l~-~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  461 (542)
                      ++|++++|.++ .+|.++..+++|++|++++|.+++..+..++.+++|++|++++|++....+..+..+++|+.|++++|
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            99999999988 47888999999999999999999877778899999999999999998766677899999999999999


Q ss_pred             cCCCCCCC----------------------------------------------------------------------CC
Q 009136          462 IASLPENP----------------------------------------------------------------------PF  471 (542)
Q Consensus       462 ~~~~~~~~----------------------------------------------------------------------~~  471 (542)
                      .+.+..|.                                                                      .+
T Consensus       549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~  628 (768)
T 3rgz_A          549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF  628 (768)
T ss_dssp             EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred             ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence            77643332                                                                      34


Q ss_pred             CCCchhHHHHH-hhccc-cCchhhhcCCCCCEEeCCCCccc-ccCccccCCCCCCEEECCCCcCC-cCCCCCCC
Q 009136          472 SSLPHLQELYL-RMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELVS  541 (542)
Q Consensus       472 ~~~~~L~~L~l-~~~~~-~~~~~l~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~-~lp~~~~~  541 (542)
                      ..+++|+.|++ .+.+. .+|..++++++|+.|++++|.++ .+|+.+..+++|+.|++++|+++ .+|+.+..
T Consensus       629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence            45677888888 66665 78999999999999999999998 67999999999999999999999 67776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.6e-47  Score=398.59  Aligned_cols=473  Identities=20%  Similarity=0.256  Sum_probs=378.4

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (542)
                      ..+++++.+++++|..+..               ++++|++++|.++.+ |.+|.++++|++|++++|.+..+ |.+|.+
T Consensus        15 ~~~~c~~~~l~~iP~~l~~---------------~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   79 (606)
T 3t6q_A           15 KTYNCENLGLNEIPGTLPN---------------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS   79 (606)
T ss_dssp             TEEECTTSCCSSCCTTSCT---------------TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ceEECCCCCcccCcCCCCC---------------cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC
Confidence            5688999999999987743               589999999999877 56889999999999999988876 668899


Q ss_pred             CCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccCC-cccccCCCccEEE
Q 009136           90 LHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD  166 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~  166 (542)
                      +++|++|++++|.++.+ |..+..+++|++|++++|.+..+ +..+.++++|++|++++|.+..++ ..+..+++|++|+
T Consensus        80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  159 (606)
T 3t6q_A           80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD  159 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE
T ss_pred             ccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEE
Confidence            99999999999988855 66788999999999999998876 467888999999999999888653 3344589999999


Q ss_pred             ccCCcccccchhhhhccccCc--EEEcCCcccCccccccCCCC-------------------------------------
Q 009136          167 VEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLS-------------------------------------  207 (542)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~-------------------------------------  207 (542)
                      +++|.+..+.+..++.+++|+  ++++++|.+..++.......                                     
T Consensus       160 L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~  239 (606)
T 3t6q_A          160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD  239 (606)
T ss_dssp             CCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred             cccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccc
Confidence            999999888888888888888  88888888866543222222                                     


Q ss_pred             ---------------cccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchh
Q 009136          208 ---------------RLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE  271 (542)
Q Consensus       208 ---------------~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~  271 (542)
                                     +++.+++.+|.+..++. .+..+++|+.|++++|.+..+|..+..+++|++|++++|.+...+..
T Consensus       240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI  319 (606)
T ss_dssp             CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred             ccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh
Confidence                           56777777777776644 47788888888888888888888888888888888888888866443


Q ss_pred             h--hcccccEEEccCCCCCC-CCh-hhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhh
Q 009136          272 A--CQLRLSVLDLSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED  347 (542)
Q Consensus       272 ~--~~~~L~~l~l~~~~l~~-l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (542)
                      .  ....|+.+++++|.+.. ++. .+..+++|+.|++++|.+.......                              
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------------------  369 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN------------------------------  369 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST------------------------------
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc------------------------------
Confidence            2  23448888888887763 444 3778888888888888876543100                              


Q ss_pred             hhhhhhcccccccEEEecCCCCCCC-CccccccCCccEEECCCCcccccC--hhcccCccCcEEEccCCcCCCCChhhhh
Q 009136          348 LITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILT  424 (542)
Q Consensus       348 ~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~~~l~  424 (542)
                         ......+++++++++++.+..+ +..+..+++|++|++++|.++...  ..+..+++|++|++++|.+++.++..+.
T Consensus       370 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  446 (606)
T 3t6q_A          370 ---LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD  446 (606)
T ss_dssp             ---TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred             ---hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence               0112235789999999988754 556777899999999999887643  3478899999999999999988888889


Q ss_pred             CCCCCcEEEccCCCCccc---CCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccc-cCchhhhcCCCC
Q 009136          425 SLSSLSCLKLDNNPLRQV---PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLR-EAPTDILRLQQL  499 (542)
Q Consensus       425 ~l~~L~~L~L~~n~i~~~---~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~-~~~~~l~~~~~L  499 (542)
                      .+++|++|++++|++.+.   ....+..+++|++|++++|.++...+..|..+++|++|++ .+.+. ..|..+.++++|
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence            999999999999998762   2255788999999999999999888888999999999999 66665 446778899999


Q ss_pred             CEEeCCCCccccc-CccccCCCCCCEEECCCCcCC
Q 009136          500 RILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS  533 (542)
Q Consensus       500 ~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~  533 (542)
                       .|++++|+++.+ |+.+..+++|+.|++++|+++
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  560 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLD  560 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred             -EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence             999999999877 556889999999999999876

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.3e-46  Score=393.75  Aligned_cols=503  Identities=24%  Similarity=0.304  Sum_probs=242.1

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (542)
                      +.+|+++++++++|.++.               +++++|++++|.+..++ .+|.++++|++|++++|.+..+ |.++.+
T Consensus         7 ~~~~cs~~~L~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   71 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP---------------TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK   71 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC---------------TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH
T ss_pred             CeeECCCCCccccccccC---------------CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc
Confidence            345666666666665442               23555555555555443 2355555555555555555543 334555


Q ss_pred             CCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccC-CcccccCCCccEEE
Q 009136           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD  166 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~  166 (542)
                      +++|++|++++|.++.+|. .|..+++|++|++++|++..++ ..+.++++|++|++++|.+... +..+..+++|++|+
T Consensus        72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            5555555555555554443 3455555555555555554443 3344555555555555554432 22344455555555


Q ss_pred             ccCCcccccchhhhh--ccccCcEEEcCCcccCccc--------------------------------------------
Q 009136          167 VEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP--------------------------------------------  200 (542)
Q Consensus       167 l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~--------------------------------------------  200 (542)
                      +++|.++.+....+.  .+++|++|++++|.++.++                                            
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~  231 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN  231 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred             ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence            555555444433332  2244555555554443322                                            


Q ss_pred             --------cccCCCCc--ccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCc--
Q 009136          201 --------ETIGSLSR--LIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLK--  266 (542)
Q Consensus       201 --------~~~~~~~~--L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~--  266 (542)
                              .++..++.  |+.|++++|.+..+ +..+..+++|+.+++++|.+..+ +..+..+++|++|+++++...  
T Consensus       232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence                    22222222  44444444444432 23344444444444444444422 233444444444444443211  


Q ss_pred             ----ccc-----hhhhcccccEEEccCCCCCCCCh-hhcCcCCCcEEEcCCCccc--cccccccCCCcHHHHHHHhhcCC
Q 009136          267 ----EYC-----VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLR--TLRSSLVNGPTPALLKYLRSRLP  334 (542)
Q Consensus       267 ----~~~-----~~~~~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  334 (542)
                          .++     .......|+.+++++|.+.+++. .+..+++|+++++++|.+.  .++...+.....       ..+.
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~-------~~L~  384 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH-------SPLH  384 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT-------SCCC
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc-------CcCc
Confidence                011     00111235555555555555432 2455555555555555421  111111100000       0000


Q ss_pred             CCCccccccchhhhhhhhhcccccccEEEecCCCCC-CCC-ccccccCCccEEECCCCcccccC-hhcccCccCcEEEcc
Q 009136          335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIP-SEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILS  411 (542)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~-~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~  411 (542)
                      .......  .............+++++++++++.+. .++ ..+..+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus       385 ~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~  462 (680)
T 1ziw_A          385 ILNLTKN--KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR  462 (680)
T ss_dssp             EEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred             eEECCCC--CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence            0000000  000000011122345555555555554 233 34444555666666665555433 245556666666666


Q ss_pred             CCcCCC--CChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCC--------CCCCCCchhHHHH
Q 009136          412 RNKIKD--WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN--------PPFSSLPHLQELY  481 (542)
Q Consensus       412 ~~~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~~L~  481 (542)
                      +|.++.  ..+..+..+++|++|++++|+++.++...|.++++|++|++++|.++.+..        ..+.++++|+.|+
T Consensus       463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~  542 (680)
T 1ziw_A          463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN  542 (680)
T ss_dssp             TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred             cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence            665542  233445666666666666666666666666666666666666666654321        1255666666666


Q ss_pred             H-hhccccCchh-hhcCCCCCEEeCCCCcccccCcc-ccCCCCCCEEECCCCcCCcCCCC
Q 009136          482 L-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE  538 (542)
Q Consensus       482 l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~~lp~~  538 (542)
                      + .+.+..+|.. +..+++|+.|++++|+++.+|.. |..+++|+.|++++|+++.+|+.
T Consensus       543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred             CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence            6 5566666653 56667777777777776666443 56667777777777777666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.6e-46  Score=391.01  Aligned_cols=478  Identities=26%  Similarity=0.296  Sum_probs=308.2

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchH-h
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-A   86 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~-~   86 (542)
                      ++++.|+++++.++.+|...+..            +++|++|++++|.+..+ |.++.++++|++|++++|.+..+|. +
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~   92 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTR------------YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT   92 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGG------------GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEECCCCCCCCcCHHHHhC------------CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh
Confidence            45677777777777777665554            44455555555555433 3445555555555555555555443 3


Q ss_pred             hhCCCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccCCcc---cccCC-
Q 009136           87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPED---LADCS-  160 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~---~~~~~-  160 (542)
                      |..+++|++|++++|.++.++ ..+.++++|++|++++|.+... +..+.++++|++|++++|.+..++..   ...++ 
T Consensus        93 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A           93 FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            555555555555555555443 3355555555555555554432 23344455555555554444332211   11123 


Q ss_pred             --------------------------------------------------CccEEEccCCcccccchhhhhcccc--CcE
Q 009136          161 --------------------------------------------------KMSKLDVEGNKLTVLSNNLIASWTM--LTE  188 (542)
Q Consensus       161 --------------------------------------------------~L~~L~l~~~~~~~~~~~~~~~~~~--L~~  188 (542)
                                                                        +|+.|++++|.+....+..+..++.  |++
T Consensus       173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~  252 (680)
T 1ziw_A          173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM  252 (680)
T ss_dssp             ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred             ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence                                                              3344444444444444444444443  777


Q ss_pred             EEcCCcccCccc-cccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCc------ccch----hccCCCCcc
Q 009136          189 LIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS------ALPA----ELGKLSKLG  256 (542)
Q Consensus       189 L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~------~~~~----~~~~~~~L~  256 (542)
                      |++++|.+..++ ..+..+++|+.|++++|.+..+ +..+..+++|+.++++++...      .+|.    .+..+++|+
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~  332 (680)
T 1ziw_A          253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE  332 (680)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred             EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence            777777776553 5577777888888887776643 345555666666666554322      1221    344455555


Q ss_pred             EEEcCCCcCcccchhhhc--ccccEEE----------------------------ccCCCCCCC-ChhhcCcCCCcEEEc
Q 009136          257 TLDLHSNQLKEYCVEACQ--LRLSVLD----------------------------LSNNSLSGL-PPEIGKMTTLRKLLL  305 (542)
Q Consensus       257 ~L~l~~~~i~~~~~~~~~--~~L~~l~----------------------------l~~~~l~~l-~~~l~~~~~L~~L~l  305 (542)
                      +|++++|.+...+...+.  .+|+.++                            +++|.++++ +..+..+++|+.|++
T Consensus       333 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  412 (680)
T 1ziw_A          333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL  412 (680)
T ss_dssp             EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeC
Confidence            555555555443332211  2244444                            444444443 233445555555555


Q ss_pred             CCCcccc-ccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC-CccccccCCcc
Q 009136          306 TGNPLRT-LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEIT  383 (542)
Q Consensus       306 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~  383 (542)
                      ++|.+.. ++.                                   ......+++++++++++.+..+ +..+..+++|+
T Consensus       413 ~~N~l~~~~~~-----------------------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~  457 (680)
T 1ziw_A          413 GLNEIGQELTG-----------------------------------QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ  457 (680)
T ss_dssp             CSSCCEEECCS-----------------------------------GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred             CCCcCccccCc-----------------------------------ccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence            5554432 111                                   1122346789999999998754 44566789999


Q ss_pred             EEECCCCccc---ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCC--------ccCCCCC
Q 009136          384 KLDLSRNSIQ---ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD--------GFKDIPM  452 (542)
Q Consensus       384 ~L~l~~~~l~---~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~--------~~~~~~~  452 (542)
                      +|++.+|.+.   .+|..+..+++|++|++++|.+++++...|.++++|++|++++|++..+...        .|.++++
T Consensus       458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~  537 (680)
T 1ziw_A          458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH  537 (680)
T ss_dssp             EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred             cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCC
Confidence            9999999875   4677899999999999999999999999999999999999999999876332        3788999


Q ss_pred             CceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccCcc-cc-CCCCCCEEECC
Q 009136          453 LQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FK-NLTSLTELDLS  528 (542)
Q Consensus       453 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~-l~-~~~~L~~L~l~  528 (542)
                      |++|++++|+++.+.+..|.++++|+.|++ .+.+..+|.. +..+++|+.|++++|+++.++.. +. .+++|+.|+++
T Consensus       538 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~  617 (680)
T 1ziw_A          538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR  617 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred             CCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence            999999999999887778999999999999 8888888876 57899999999999999988544 66 78999999999


Q ss_pred             CCcCC
Q 009136          529 DNNIS  533 (542)
Q Consensus       529 ~~~l~  533 (542)
                      +|++.
T Consensus       618 ~N~~~  622 (680)
T 1ziw_A          618 FNPFD  622 (680)
T ss_dssp             TCCCC
T ss_pred             CCCcc
Confidence            99976

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-45  Score=380.96  Aligned_cols=473  Identities=22%  Similarity=0.283  Sum_probs=379.1

Q ss_pred             hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcch-Hhhh
Q 009136           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (542)
Q Consensus        11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~-~~~~   88 (542)
                      -..+++++.+++++|..+.               +++++|++++|.+..++ .+|..+++|++|++++|.+..++ .+|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~   73 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ   73 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred             CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence            3568999999999998663               46999999999999775 57999999999999999999874 5799


Q ss_pred             CCCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCcccc--CCcccccCCCccE
Q 009136           89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK  164 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~  164 (542)
                      ++++|++|++++|.++.++ ..|..+++|++|++++|++..++. .++++++|++|++++|.+..  +|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            9999999999999998765 679999999999999999998775 68899999999999999885  6888999999999


Q ss_pred             EEccCCcccccchhhhhccccC----cEEEcCCcccCccccccCCCCcccEEEccCCCCc--cCCCCC------------
Q 009136          165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSI------------  226 (542)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~------------  226 (542)
                      |++++|.+..+....++.+.+|    .++++++|.+..++.......+|+.+++.+|...  .++..+            
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence            9999999998888888888888    8999999999876644334447999998887322  111111            


Q ss_pred             ------------------cCCC--CCcEEEcCCC-cCc-ccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccC
Q 009136          227 ------------------SGCC--SLAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN  284 (542)
Q Consensus       227 ------------------~~~~--~L~~l~l~~~-~~~-~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~  284 (542)
                                        ..++  .++.+++.++ .+. ..+..+..+++|+++++++|.+..++.......++.+++++
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~  313 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN  313 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEES
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeecc
Confidence                              1111  1233444443 222 34566777888888888888888776665555788888888


Q ss_pred             CCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEe
Q 009136          285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (542)
Q Consensus       285 ~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l  364 (542)
                      |.+..+|.  ..+++|+.+++++|.+......                                     ...++++++++
T Consensus       314 n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-------------------------------------~~~~~L~~L~l  354 (570)
T 2z63_A          314 CKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDL  354 (570)
T ss_dssp             CBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-------------------------------------CBCTTCCEEEC
T ss_pred             CcccccCc--ccccccCEEeCcCCcccccccc-------------------------------------ccCCCCCEEeC
Confidence            88887766  4678888888888865332110                                     12357888888


Q ss_pred             cCCCCCCC---CccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCCh-hhhhCCCCCcEEEccCCCCc
Q 009136          365 EGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLR  440 (542)
Q Consensus       365 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~i~  440 (542)
                      +++.+...   +..+..+++|++|++++|.+..++..+..+++|++|++++|.+++... ..+..+++|++|++++|.+.
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence            88887755   466777889999999999988887778889999999999998887654 56788999999999999988


Q ss_pred             ccCCCccCCCCCCceEecCCCcCC-CCCCCCCCCCchhHHHHH-hhccccC-chhhhcCCCCCEEeCCCCcccccC-ccc
Q 009136          441 QVPSDGFKDIPMLQILDLSYNIAS-LPENPPFSSLPHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGF  516 (542)
Q Consensus       441 ~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l-~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~l~-~~l  516 (542)
                      ......+.++++|++|++++|.+. ...+..+..+++|++|++ .+.+..+ |..+..+++|++|++++|.++.++ ..|
T Consensus       435 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            877777888999999999999886 345678888999999999 6677765 778889999999999999999884 568


Q ss_pred             cCCCCCCEEECCCCcCCc-CCC
Q 009136          517 KNLTSLTELDLSDNNISA-LPP  537 (542)
Q Consensus       517 ~~~~~L~~L~l~~~~l~~-lp~  537 (542)
                      ..+++|+.|++++|+++. .|.
T Consensus       515 ~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTT
T ss_pred             hcccCCcEEEecCCcccCCCcc
Confidence            999999999999999884 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.5e-46  Score=385.93  Aligned_cols=450  Identities=21%  Similarity=0.243  Sum_probs=381.2

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcc-hHh
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA   86 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l-~~~   86 (542)
                      +++++|+++++.+++++...+..            +++|++|++++|.+..+ |.+|.++++|++|++++|.+..+ |.+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            56899999999999998876665            78899999999999977 56899999999999999999987 778


Q ss_pred             hhCCCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCC--cCCccccCCCCCCeEEccCCccccCC-cccccCCCc
Q 009136           87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM  162 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L  162 (542)
                      |.++++|++|++++|.++.++ ..++++++|++|++++|.+.  .+|..+.++++|++|++++|.+..++ ..+..+.+|
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            999999999999999998776 67999999999999999988  47888999999999999999988654 335555444


Q ss_pred             ----cEEEccCCcccccchhhhhccccCcEEEcCCcccC-----------------------------------------
Q 009136          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-----------------------------------------  197 (542)
Q Consensus       163 ----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----------------------------------------  197 (542)
                          .++++++|.+..+....+... +|++|++++|.+.                                         
T Consensus       180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l  258 (606)
T 3vq2_A          180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL  258 (606)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred             ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence                478898888888877766655 7888888777542                                         


Q ss_pred             -----------------c-cccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEE
Q 009136          198 -----------------G-MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD  259 (542)
Q Consensus       198 -----------------~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~  259 (542)
                                       . +|. +..+++|+.+++.++.+..++ .+..+++|+.+++++|.+..+|. + .+++|++|+
T Consensus       259 ~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~  334 (606)
T 3vq2_A          259 CDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLT  334 (606)
T ss_dssp             GGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEE
T ss_pred             hhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCccccc-C-CCCccceee
Confidence                             0 112 556788999999999998887 88899999999999999998884 5 999999999


Q ss_pred             cCCCcCcccchhhhcccccEEEccCCCCCCC---ChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCC
Q 009136          260 LHSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN  336 (542)
Q Consensus       260 l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (542)
                      +++|............+|+.+++++|.++.+   +..+..+++|+.|++++|.+..++...                   
T Consensus       335 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------  395 (606)
T 3vq2_A          335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF-------------------  395 (606)
T ss_dssp             EESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC-------------------
T ss_pred             ccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhc-------------------
Confidence            9999544333333445699999999998875   778899999999999999887654111                   


Q ss_pred             CccccccchhhhhhhhhcccccccEEEecCCCCCCCCc--cccccCCccEEECCCCcccc-cChhcccCccCcEEEccCC
Q 009136          337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRN  413 (542)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~  413 (542)
                                       ...+++++++++++.+...+.  .+..+++|++|++++|.++. .|..+..+++|++|++++|
T Consensus       396 -----------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          396 -----------------MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             -----------------TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             -----------------cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence                             123578999999999886654  67778999999999999887 5667899999999999999


Q ss_pred             cCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCch
Q 009136          414 KIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT  491 (542)
Q Consensus       414 ~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~  491 (542)
                      .+++ ..+..+..+++|++|++++|+++++.+..+.++++|++|++++|+++...+..+..+++|+.|++ .+.+..+|.
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~  538 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG  538 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence            9987 45666899999999999999999988888999999999999999999988889999999999999 888899999


Q ss_pred             hhhcCC-CCCEEeCCCCcccc
Q 009136          492 DILRLQ-QLRILDLSQNSLQS  511 (542)
Q Consensus       492 ~l~~~~-~L~~L~l~~~~l~~  511 (542)
                      .+..++ +|+.|++++|++..
T Consensus       539 ~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          539 ILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CGGGSCTTCCEEECCSCCCCC
T ss_pred             hHhhhcccCcEEEccCCCccc
Confidence            999887 59999999998763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.9e-45  Score=379.19  Aligned_cols=480  Identities=21%  Similarity=0.235  Sum_probs=333.9

Q ss_pred             CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccccC-CccccccCCccEEEcCC
Q 009136           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~  123 (542)
                      .-+.++.++..+..+|..+..  ++++|++++|.++.+ +.+|.++++|++|++++|.+..+ |..|.++++|++|++++
T Consensus        13 ~~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           13 VNKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            456899999999999988764  899999999999988 56899999999999999999865 77899999999999999


Q ss_pred             CcCCcC-CccccCCCCCCeEEccCCccccC-CcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc-c
Q 009136          124 NQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-P  200 (542)
Q Consensus       124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~  200 (542)
                      |++..+ |..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.++.+ +
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            999865 67899999999999999999987 56689999999999999999987655577799999999999999876 4


Q ss_pred             cccCCCCccc--EEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc--------------------------cc-chhccC
Q 009136          201 ETIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--------------------------AL-PAELGK  251 (542)
Q Consensus       201 ~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------------------------~~-~~~~~~  251 (542)
                      ..+..+++|+  .+++++|.+..++.......+|+.++++++...                          .+ +..+..
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~  250 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG  250 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred             hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence            6688889998  899999999876554445566777777665310                          00 011111


Q ss_pred             C--CCccEEEcCCCcCcccchhhhc--ccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHH
Q 009136          252 L--SKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK  327 (542)
Q Consensus       252 ~--~~L~~L~l~~~~i~~~~~~~~~--~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  327 (542)
                      +  .+++.+++++|.++.++...+.  ..|+.+++++|.++.+|..+..+++|++|++++|.+..+....+....     
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----  325 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-----  325 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-----
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC-----
Confidence            1  1566777777766665554322  347777777777777776677777777777777766554322211100     


Q ss_pred             HHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC---CccccccCCccEEECCCCccccc-ChhcccCc
Q 009136          328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEITKLDLSRNSIQEL-PPELSSCA  403 (542)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~  403 (542)
                          .+........... ...........+++++++++++.+...   +..+..+++|++|++++|.+..+ |..+..++
T Consensus       326 ----~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  400 (606)
T 3t6q_A          326 ----SLTHLSIKGNTKR-LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP  400 (606)
T ss_dssp             ----TCSEEECCSCSSC-CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred             ----cCCEEECCCCCcc-cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc
Confidence                0000000000000 000000112235667777777776644   44556667777777777776654 44566777


Q ss_pred             cCcEEEccCCcCCCCCh-hhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCC---CCCCCCCCchhHH
Q 009136          404 SLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQE  479 (542)
Q Consensus       404 ~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~L~~  479 (542)
                      +|++|++++|.+++..+ ..+..+++|++|++++|.+.......+..+++|++|++++|.+...   .+..+..+++|++
T Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence            77777777777765433 3366777777777777777766666677777777777777766541   2244666777777


Q ss_pred             HHH-hhccccC-chhhhcCCCCCEEeCCCCccccc-CccccCCCCCCEEECCCCcCCcCCCC
Q 009136          480 LYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPE  538 (542)
Q Consensus       480 L~l-~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~lp~~  538 (542)
                      |++ .+.+..+ |..+..+++|++|++++|+++.. |+.+.++++| .|++++|+++.+|+.
T Consensus       481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~  541 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS  541 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred             EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence            777 5555544 45667777777777777777654 5667777777 777777777776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-43  Score=378.58  Aligned_cols=469  Identities=23%  Similarity=0.267  Sum_probs=374.4

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCC-Ccc-hHhhh
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKL-SEL-PAAIG   88 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~-~~l-~~~~~   88 (542)
                      +..|+++++++.+|. +               .+++++|++++|.+..+ +.+|.++++|++|++++|.. ..+ |.+|.
T Consensus         7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~   70 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR   70 (844)
T ss_dssp             EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred             eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence            468999999999998 4               45799999999999866 57899999999999999954 456 67899


Q ss_pred             CCCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCc-CCcc--ccCCCCCCeEEccCCccccCC--cccccCCCc
Q 009136           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM  162 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L  162 (542)
                      ++++|++|++++|.+..+ |..|..+++|++|++++|.+.. ++..  +.++++|++|++++|.+..++  ..++.+++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            999999999999999865 7889999999999999999885 4443  889999999999999998653  468999999


Q ss_pred             cEEEccCCcccccchhhhhcc--ccCcEEEcCCcccCc-cccccCCCCc------ccEEEccCCCCcc-CCCC-------
Q 009136          163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS-------  225 (542)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~~~~~~~------L~~L~l~~~~~~~-~~~~-------  225 (542)
                      ++|++++|.+..+....+..+  ++|+.|++++|.+.. .+..+..+++      |+.|++++|.+.. .+..       
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            999999999988777777777  889999999998854 4444444443      8999999886541 1111       


Q ss_pred             -----------------------------CcC--CCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhh
Q 009136          226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC  273 (542)
Q Consensus       226 -----------------------------~~~--~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~  273 (542)
                                                   +..  .++++.|++++|.+..+ +..+..+++|+.|++++|.++......+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                         111  36899999999988855 5668889999999999999887755433


Q ss_pred             --cccccEEEccCCCCCCC-ChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhh
Q 009136          274 --QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (542)
Q Consensus       274 --~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (542)
                        ..+|+.|++++|.+..+ +..+..+++|+.|++++|.+..++...+..                              
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------  360 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------------------------------  360 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS------------------------------
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC------------------------------
Confidence              24599999999998886 556888999999999999887665443322                              


Q ss_pred             hhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChh-hhhCCCCC
Q 009136          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSL  429 (542)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L  429 (542)
                           .++++.+++++|.+..++.    +++|++|++++|.++.+|..   ..+++.|++++|.+++++.. .+.++++|
T Consensus       361 -----l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          361 -----LEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             -----CCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             -----CCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence                 3578899999998887654    77899999999998888753   56788999999999886543 35688999


Q ss_pred             cEEEccCCCCcccCCC-ccCCCCCCceEecCCCcCCC-----CCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCE
Q 009136          430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASL-----PENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRI  501 (542)
Q Consensus       430 ~~L~L~~n~i~~~~~~-~~~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~  501 (542)
                      ++|++++|++..+... .+..+++|+.|++++|.+..     ..+..|.++++|+.|++ .+.+..++.. +..+++|+.
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  508 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG  508 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence            9999999998865433 45668899999999998863     33456788899999999 7777776655 678999999


Q ss_pred             EeCCCCcccccCccccCCCCCCEEECCCCcCCcCCCCC
Q 009136          502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL  539 (542)
Q Consensus       502 L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~~~  539 (542)
                      |++++|+++.+|...-. ++|+.|++++|+++.+++..
T Consensus       509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~  545 (844)
T 3j0a_A          509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV  545 (844)
T ss_dssp             EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC
T ss_pred             eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH
Confidence            99999999988654322 88999999999998776654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.3e-43  Score=362.86  Aligned_cols=464  Identities=20%  Similarity=0.243  Sum_probs=333.9

Q ss_pred             hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcch-Hhhh
Q 009136           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (542)
Q Consensus        11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~-~~~~   88 (542)
                      ....|+++++++++|..++               ++|++|++++|.+..+ |.+|..+++|++|++++|.+..++ .+|.
T Consensus         7 ~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   71 (549)
T 2z81_A            7 SGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY   71 (549)
T ss_dssp             TSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc
Confidence            3457888899999998764               4699999999998866 467899999999999999998775 5788


Q ss_pred             CCCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCc--CCccccCCCCCCeEEccCCc-cccCC-cccccCCCcc
Q 009136           89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCSKMS  163 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~l~-~~~~~~~~L~  163 (542)
                      .+++|++|++++|.++.++.. ++.+++|++|++++|.+..  .+..+.++++|++|++++|. +..++ ..+..+++|+
T Consensus        72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  151 (549)
T 2z81_A           72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN  151 (549)
T ss_dssp             TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence            999999999999998877655 8889999999999998884  45678889999999999987 56665 4688889999


Q ss_pred             EEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc-CCCCcccEEEccCCCCccCC----CCCcCCCCCcEEEcC
Q 009136          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMG  238 (542)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~l~l~  238 (542)
                      +|++++|.+....+..+..+++|++|+++++....++..+ ..+++|+.|++++|.+...+    .....+++|+.++++
T Consensus       152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~  231 (549)
T 2z81_A          152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR  231 (549)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred             eeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence            9999999988877777888899999999998887776543 45788999999998887642    223457788888888


Q ss_pred             CCcCc-----ccchhccCCCCccEEEcCCCcCcccchh--------hhcccccEEEccCCCCCCC------ChhhcCcCC
Q 009136          239 NNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE--------ACQLRLSVLDLSNNSLSGL------PPEIGKMTT  299 (542)
Q Consensus       239 ~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~~~~~~--------~~~~~L~~l~l~~~~l~~l------~~~l~~~~~  299 (542)
                      ++.+.     .++..+..+++|+.+++++|.+......        .....++.+++.++.+...      +.......+
T Consensus       232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~  311 (549)
T 2z81_A          232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK  311 (549)
T ss_dssp             SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred             ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence            88766     2334456677888888887766543211        1122366666666544331      222233456


Q ss_pred             CcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC-C---cc
Q 009136          300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-P---SE  375 (542)
Q Consensus       300 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~---~~  375 (542)
                      ++.+++++|.+..++...+                                   ...+++++++++++.+... +   ..
T Consensus       312 L~~L~l~~n~l~~ip~~~~-----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~  356 (549)
T 2z81_A          312 VKRITVENSKVFLVPCSFS-----------------------------------QHLKSLEFLDLSENLMVEEYLKNSAC  356 (549)
T ss_dssp             CCEEEEESSCCCCCCHHHH-----------------------------------HHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred             ceEEEeccCccccCCHHHH-----------------------------------hcCccccEEEccCCccccccccchhh
Confidence            6666666666544332111                                   1124566666766666532 1   22


Q ss_pred             ccccCCccEEECCCCcccccCh---hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCC
Q 009136          376 IWEAGEITKLDLSRNSIQELPP---ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM  452 (542)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~---~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~  452 (542)
                      +..+++|++|++++|.++.++.   .+..+++|++|++++|+++.++.. +..+++|++|++++|++..++...   .++
T Consensus       357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~~~  432 (549)
T 2z81_A          357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---PQT  432 (549)
T ss_dssp             TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---CTT
T ss_pred             hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---cCC
Confidence            4456777777777777766542   366777777777777777765543 466677777777777776655432   257


Q ss_pred             CceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCcccccC-ccccCCCCCCEEECCCC
Q 009136          453 LQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDN  530 (542)
Q Consensus       453 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~  530 (542)
                      |++|++++|+++..    ...+++|++|++ .+.+..+|. ...+++|+.|++++|+++.++ ..+..+++|+.|++++|
T Consensus       433 L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          433 LEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             CSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred             ceEEECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence            77777777777653    246777777777 666667776 456899999999999999874 55899999999999999


Q ss_pred             cCC
Q 009136          531 NIS  533 (542)
Q Consensus       531 ~l~  533 (542)
                      +++
T Consensus       508 ~~~  510 (549)
T 2z81_A          508 PWD  510 (549)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=359.31  Aligned_cols=454  Identities=21%  Similarity=0.239  Sum_probs=373.9

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcch-Hh
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA   86 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~-~~   86 (542)
                      .+++.|+++++++++++...+..            +++|++|++++|.+..++ .+|.++++|++|++++|.++.++ .+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence            35889999999999988766665            788999999999999775 67999999999999999999875 58


Q ss_pred             hhCCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCc--CCccccCCCCCCeEEccCCccccCC-cccccCCCc
Q 009136           87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM  162 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L  162 (542)
                      |..+++|++|++++|.++.++. .++.+++|++|++++|.+..  +|..+.++++|++|++++|.+..++ ..+..+++|
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            9999999999999999998865 58999999999999999985  6889999999999999999998664 457777777


Q ss_pred             ----cEEEccCCcccccchhhhhccccCcEEEcCCcccC--ccccccCCCC-----------------------------
Q 009136          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLS-----------------------------  207 (542)
Q Consensus       163 ----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~-----------------------------  207 (542)
                          +.+++++|.+..+.+..+... +|+++++++|...  .++..+..++                             
T Consensus       176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l  254 (570)
T 2z63_A          176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  254 (570)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred             chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence                899999999998888777765 7999998887432  1121122222                             


Q ss_pred             ---cccEEEccCC-CCc-cCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEc
Q 009136          208 ---RLIRLDLHQN-RIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (542)
Q Consensus       208 ---~L~~L~l~~~-~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l  282 (542)
                         .++.+++.++ .+. ..+..+..+++|+.+++++|.+..+|..+..+ +|++|++++|.+..++.. ....|+.+++
T Consensus       255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~-~l~~L~~L~l  332 (570)
T 2z63_A          255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL-KLKSLKRLTF  332 (570)
T ss_dssp             GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBC-BCSSCCEEEE
T ss_pred             cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcc-cccccCEEeC
Confidence               2344444444 222 45677888999999999999999999888888 999999999999877663 4456999999


Q ss_pred             cCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEE
Q 009136          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (542)
Q Consensus       283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (542)
                      ++|.+...... ..+++|+.|++++|.+.......                                 ......++++++
T Consensus       333 ~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~---------------------------------~~~~~~~~L~~L  378 (570)
T 2z63_A          333 TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCS---------------------------------QSDFGTTSLKYL  378 (570)
T ss_dssp             ESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEE---------------------------------HHHHTCSCCCEE
T ss_pred             cCCcccccccc-ccCCCCCEEeCcCCccCcccccc---------------------------------ccccccCccCEE
Confidence            99987764443 77899999999999876442100                                 011124678999


Q ss_pred             EecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (542)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~  440 (542)
                      +++++.+..++..+..+++|++|++++|.+...+.  .+..+++|++|++++|.+++..+..+.++++|++|++++|++.
T Consensus       379 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  458 (570)
T 2z63_A          379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  458 (570)
T ss_dssp             ECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             ECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc
Confidence            99999998888778889999999999999887643  6789999999999999999988888999999999999999987


Q ss_pred             c-cCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCch-hhhcCCCCCEEeCCCCcccc
Q 009136          441 Q-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQS  511 (542)
Q Consensus       441 ~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~  511 (542)
                      + ..+..+..+++|++|++++|+++...+..+..+++|+.|++ .+.+..++. .+..+++|+.|++++|++..
T Consensus       459 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            3 33456899999999999999999988889999999999999 777777764 47899999999999998873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=373.83  Aligned_cols=467  Identities=25%  Similarity=0.282  Sum_probs=381.5

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCc-ccch-hHhhcCCCCCcEEEcCCCCCCcc-hH
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSEL-PA   85 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l-~~~l~~~~~L~~L~l~~~~~~~l-~~   85 (542)
                      ++++.||++++.|+.++...+..            +++|++|++++|. +..+ |.+|.++++|++|++++|.+..+ |.
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~------------l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPF------------LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSS------------CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCcCEEECCCCcCCccChhHCcc------------cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            57899999999999886655554            7889999999994 4466 67899999999999999999977 77


Q ss_pred             hhhCCCCCcEEecCCCcccc-CCcc--ccccCCccEEEcCCCcCCcCC--ccccCCCCCCeEEccCCccccC-CcccccC
Q 009136           86 AIGELHMLKSLDVSFNSIMK-IPDE--IGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSL-PEDLADC  159 (542)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~  159 (542)
                      +|.++++|++|++++|.++. ++..  +.++++|++|++++|.+..++  ..+.++++|++|++++|.+..+ +..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            99999999999999999885 4544  899999999999999998653  5689999999999999998754 4456655


Q ss_pred             --CCccEEEccCCcccccchhhhhcccc------CcEEEcCCcccCc-cccc----------------------------
Q 009136          160 --SKMSKLDVEGNKLTVLSNNLIASWTM------LTELIASKNLLNG-MPET----------------------------  202 (542)
Q Consensus       160 --~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~-~~~~----------------------------  202 (542)
                        ++|+.|++++|.+.......+..+.+      |++|++++|.+.. .+..                            
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              88999999998887655444444443      8899998886531 1111                            


Q ss_pred             --------cCC--CCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccch
Q 009136          203 --------IGS--LSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCV  270 (542)
Q Consensus       203 --------~~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~  270 (542)
                              +..  .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++....
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence                    111  26799999999998855 56789999999999999999966 5678999999999999999987644


Q ss_pred             hhh--cccccEEEccCCCCCCCCh-hhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhh
Q 009136          271 EAC--QLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED  347 (542)
Q Consensus       271 ~~~--~~~L~~l~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (542)
                      ..+  ...|+.+++++|.+..++. .+..+++|+.|++++|.+..++.                                
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--------------------------------  379 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--------------------------------  379 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--------------------------------
T ss_pred             HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--------------------------------
Confidence            332  2459999999999998765 47889999999999998865431                                


Q ss_pred             hhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChh-hhh
Q 009136          348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA-ILT  424 (542)
Q Consensus       348 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~-~l~  424 (542)
                              .++++.+.++++.+..+|..   ..+++.|++++|.++.++.  .+..+++|++|++++|.+++.+.. .+.
T Consensus       380 --------~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  448 (844)
T 3j0a_A          380 --------IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS  448 (844)
T ss_dssp             --------CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred             --------CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence                    35688999999999988754   4689999999999988765  356899999999999999876443 456


Q ss_pred             CCCCCcEEEccCCCCccc-----CCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCC
Q 009136          425 SLSSLSCLKLDNNPLRQV-----PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQ  498 (542)
Q Consensus       425 ~l~~L~~L~L~~n~i~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~  498 (542)
                      .+++|+.|++++|.+...     ....|.++++|+.|++++|.++.+.+..|..+++|++|++ .+.+..++..... ++
T Consensus       449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~  527 (844)
T 3j0a_A          449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-AN  527 (844)
T ss_dssp             SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SC
T ss_pred             cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-cc
Confidence            689999999999998743     3345788999999999999999999999999999999999 8888888766544 89


Q ss_pred             CCEEeCCCCcccccCccccCCCCCCEEECCCCcCC
Q 009136          499 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS  533 (542)
Q Consensus       499 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~  533 (542)
                      |+.|++++|+++.++..  .+++|+.|++++|++.
T Consensus       528 L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          528 LEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI  560 (844)
T ss_dssp             CCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred             ccEEECCCCcCCCCChh--HhCCcCEEEecCCCcc
Confidence            99999999999977332  2458999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-42  Score=353.64  Aligned_cols=445  Identities=20%  Similarity=0.248  Sum_probs=318.8

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (542)
                      +.+|+++++++++|..++               ++|++|++++|.+..++ .+|..+++|++|++++|.++.+ |.+|..
T Consensus         3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   67 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF   67 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred             ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence            578899999988887663               46899999998888665 6788888899999988888876 668888


Q ss_pred             CCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCc--CCccccCCCCCCeEEccCCccccCCcccccCCCc--cEE
Q 009136           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL  165 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--~~L  165 (542)
                      +++|++|++++|.++.+|..  .+++|++|++++|.+..  +|..++++++|++|++++|.+..  ..+..+++|  ++|
T Consensus        68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV  143 (520)
T ss_dssp             CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred             ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence            88888888888888877766  78888888888888775  45677777777777777777664  245555555  666


Q ss_pred             EccCCcc--cccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCcc-C-CCCCcCCCCCcEEEcCCCc
Q 009136          166 DVEGNKL--TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNNA  241 (542)
Q Consensus       166 ~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~l~l~~~~  241 (542)
                      ++++|.+  ....+..+..+..                      ....+++.+|.+.. + ...+..+++|+.+++++|.
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNT----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCE----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             Eeeccccccccccccccccccc----------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence            6666665  3322222222221                      12223344443331 1 1234455556666655554


Q ss_pred             -------CcccchhccCCCCccEEEcCCCcCcccch-----hhhcccccEEEccCCCCC-CCChhh-----cCcCCCcEE
Q 009136          242 -------LSALPAELGKLSKLGTLDLHSNQLKEYCV-----EACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKL  303 (542)
Q Consensus       242 -------~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-----~~~~~~L~~l~l~~~~l~-~l~~~l-----~~~~~L~~L  303 (542)
                             +......+..+++|+.|+++++.+.....     .....+++.+++++|.+. .+|..+     ..+++|+.+
T Consensus       202 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             STTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             cccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEec
Confidence                   22222346666777777777665553211     112235777777777776 466666     778888888


Q ss_pred             EcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCcc
Q 009136          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT  383 (542)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~  383 (542)
                      +++++.+ .++...        ...                        .....+++.++++++.+...+. ...+++|+
T Consensus       282 ~l~~n~~-~~p~~~--------~~~------------------------~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~  327 (520)
T 2z7x_B          282 QVVSDVF-GFPQSY--------IYE------------------------IFSNMNIKNFTVSGTRMVHMLC-PSKISPFL  327 (520)
T ss_dssp             EEEECCC-CSCTHH--------HHH------------------------HHHTCCCSEEEEESSCCCCCCC-CSSCCCCC
T ss_pred             cccccce-ecchhh--------hhc------------------------ccccCceeEEEcCCCccccccc-hhhCCccc
Confidence            8887765 322100        000                        0011357888888888766542 24678999


Q ss_pred             EEECCCCcccc-cChhcccCccCcEEEccCCcCCCCCh--hhhhCCCCCcEEEccCCCCcc-cCCCccCCCCCCceEecC
Q 009136          384 KLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLS  459 (542)
Q Consensus       384 ~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~l~  459 (542)
                      +|++++|.++. +|..+..+++|++|++++|.+++++.  ..+..+++|++|++++|++.. ++...+..+++|++|+++
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            99999999887 67788899999999999999987543  568899999999999999987 776678888999999999


Q ss_pred             CCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCcccccCcc-ccCCCCCCEEECCCCcCC
Q 009136          460 YNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS  533 (542)
Q Consensus       460 ~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~  533 (542)
                      +|.++...+..+.  ++|+.|++ .+.+..+|..+..+++|++|++++|+++.+|.. +..+++|+.|++++|+++
T Consensus       408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          408 SNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             SSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence            9988765544443  68999999 788889999988999999999999999999876 899999999999999986

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.9e-41  Score=348.68  Aligned_cols=456  Identities=19%  Similarity=0.231  Sum_probs=372.1

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccccCC-ccccccCCccEEEc
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC  121 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l  121 (542)
                      |+.....+.+++.++.+|..+.  ++|++|++++|.++.+ +.++..+++|++|++++|.++.++ ..|..+++|++|++
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4555567888999999998664  7999999999999977 568999999999999999999764 67999999999999


Q ss_pred             CCCcCCcCCcc-ccCCCCCCeEEccCCcccc--CCcccccCCCccEEEccCCc-ccccchhhhhccccCcEEEcCCcccC
Q 009136          122 SSNQLKELPSS-LGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLN  197 (542)
Q Consensus       122 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~  197 (542)
                      ++|++..++.. +.++++|++|++++|.+..  .+..+..+++|++|++++|. +..++...+.++++|++|++++|.+.
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            99999987754 8999999999999999984  45679999999999999998 67777777999999999999999997


Q ss_pred             c-cccccCCCCcccEEEccCCCCccCCCCC-cCCCCCcEEEcCCCcCcccc----hhccCCCCccEEEcCCCcCcccchh
Q 009136          198 G-MPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP----AELGKLSKLGTLDLHSNQLKEYCVE  271 (542)
Q Consensus       198 ~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~i~~~~~~  271 (542)
                      . .|..+..+++|+.|++.++.+..++..+ ..+++|+.+++++|.+..++    .....+++|+.|+++++.++.....
T Consensus       162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  241 (549)
T 2z81_A          162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN  241 (549)
T ss_dssp             EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred             ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence            6 6788999999999999999887665543 56899999999999988652    2234578999999999987753322


Q ss_pred             h------hcccccEEEccCCCCCCCC-------hhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCc
Q 009136          272 A------CQLRLSVLDLSNNSLSGLP-------PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED  338 (542)
Q Consensus       272 ~------~~~~L~~l~l~~~~l~~l~-------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (542)
                      .      ....++.+++++|.+.++.       ..+..+.+++.+.+.++.+......   ..                 
T Consensus       242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~---~~-----------------  301 (549)
T 2z81_A          242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF---YD-----------------  301 (549)
T ss_dssp             HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS---CC-----------------
T ss_pred             HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhc---cc-----------------
Confidence            2      1234899999998766542       2246678889999888765432100   00                 


Q ss_pred             cccccchhhhhhhhhcccccccEEEecCCCCCCCCcccc-ccCCccEEECCCCcccc-cC---hhcccCccCcEEEccCC
Q 009136          339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-LP---PELSSCASLQTLILSRN  413 (542)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~-l~---~~~~~~~~L~~L~l~~~  413 (542)
                                ..........+++++++++.+..+|..+. .+++|++|++++|.+++ +|   .++..+++|++|++++|
T Consensus       302 ----------l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  371 (549)
T 2z81_A          302 ----------LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN  371 (549)
T ss_dssp             ----------CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred             ----------chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence                      00111234578999999999999998875 68999999999999876 33   23678999999999999


Q ss_pred             cCCCCCh--hhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCc
Q 009136          414 KIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP  490 (542)
Q Consensus       414 ~l~~~~~--~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~  490 (542)
                      .+++++.  ..+..+++|++|++++|+++.++.. +..+++|++|++++|.++.+....   .++|+.|++ .+.+..++
T Consensus       372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~~~  447 (549)
T 2z81_A          372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFS  447 (549)
T ss_dssp             CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSCCC
T ss_pred             cccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchh---cCCceEEECCCCChhhhc
Confidence            9998764  5689999999999999999987654 788999999999999988654332   258899999 67666654


Q ss_pred             hhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCcCCCCC
Q 009136          491 TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL  539 (542)
Q Consensus       491 ~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~~~  539 (542)
                         ..+++|++|++++|+++.+|. ...+++|+.|++++|+++.+|+..
T Consensus       448 ---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~  492 (549)
T 2z81_A          448 ---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGI  492 (549)
T ss_dssp             ---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred             ---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHH
Confidence               578999999999999999987 578999999999999999988864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.8e-40  Score=349.82  Aligned_cols=419  Identities=20%  Similarity=0.250  Sum_probs=270.0

Q ss_pred             cCCcEEEcCCCccc-chhHhhcCCCCCcEEEc-CCCCCCcc---------------------------------------
Q 009136           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL---------------------------------------   83 (542)
Q Consensus        45 ~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l-~~~~~~~l---------------------------------------   83 (542)
                      .+++.|+|+++.+. .+|.++.++++|++|+| ++|.+...                                       
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            47899999999987 78899999999999999 66633210                                       


Q ss_pred             --hHhh-----------hCCCCCcEEecCC--CccccCCccccccCCccEEEcCCCcCCc------------------CC
Q 009136           84 --PAAI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (542)
Q Consensus        84 --~~~~-----------~~l~~L~~L~l~~--~~~~~l~~~~~~l~~L~~L~l~~~~~~~------------------~~  130 (542)
                        +..+           .....++.+.+..  |.++.+|..++++++|++|++++|+++.                  +|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence              0001           1111233333332  4555677777778888888888877776                  77


Q ss_pred             cccc--CCCCCCeEEccCCccc-cCCcccccCCCccEEEccCCc-ccc-cchhhhhcc-------ccCcEEEcCCcccCc
Q 009136          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW-------TMLTELIASKNLLNG  198 (542)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~-------~~L~~L~l~~~~~~~  198 (542)
                      ..++  ++++|++|++++|.+. .+|..+..+++|+.|++++|+ ++. ..+..+..+       ++|++|++++|.+..
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~  562 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE  562 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc
Confidence            7766  7777777777777644 566677777777777777776 554 222223333       377777777777777


Q ss_pred             ccc--ccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCC-ccEEEcCCCcCcccchhhhcc
Q 009136          199 MPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL  275 (542)
Q Consensus       199 ~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~  275 (542)
                      +|.  .+..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++|.++.++......
T Consensus       563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~  641 (876)
T 4ecn_A          563 FPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK  641 (876)
T ss_dssp             CCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT
T ss_pred             cCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhcc
Confidence            776  6777777777777777776666 666777777777777777766666666666 777777666665444332221


Q ss_pred             ---cccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhh
Q 009136          276 ---RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (542)
Q Consensus       276 ---~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (542)
                         .|+.+++++|.+.+.++.+.                       ..                              ..
T Consensus       642 ~~~~L~~L~Ls~N~l~g~ip~l~-----------------------~~------------------------------l~  668 (876)
T 4ecn_A          642 SVYVMGSVDFSYNKIGSEGRNIS-----------------------CS------------------------------MD  668 (876)
T ss_dssp             CSSCEEEEECCSSCTTTTSSSCS-----------------------SC------------------------------TT
T ss_pred             ccCCCCEEECcCCcCCCccccch-----------------------hh------------------------------hc
Confidence               14444554444433211111                       00                              00


Q ss_pred             hcccccccEEEecCCCCCCCCcccc-ccCCccEEECCCCcccccChhcc--------cCccCcEEEccCCcCCCCChhhh
Q 009136          353 TRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPELS--------SCASLQTLILSRNKIKDWPDAIL  423 (542)
Q Consensus       353 ~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~--------~~~~L~~L~l~~~~l~~~~~~~l  423 (542)
                      .....+++.+++++|.+..+|..+. .+++|++|++++|.++.+|..+.        +|++|++|++++|.++.++....
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~  748 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR  748 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence            0011245666666666666666655 46788888888888877776432        23378888888888887765542


Q ss_pred             -hCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhc-cccCchhhhcCCCCCE
Q 009136          424 -TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPTDILRLQQLRI  501 (542)
Q Consensus       424 -~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~l~~~~~L~~  501 (542)
                       ..+++|+.|+|++|++..++. .+..+++|+.|++++|...       .          .+. ...+|..+.++++|+.
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~~l-------s----------~N~l~~~ip~~l~~L~~L~~  810 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDA-------E----------GNRILRQWPTGITTCPSLIQ  810 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCC-GGGGCTTCCEEECCCCBCT-------T----------CCBCCCCCCTTGGGCSSCCE
T ss_pred             hccCCCcCEEEeCCCCCCccch-hhhcCCCCCEEECCCCCCc-------c----------cccccccChHHHhcCCCCCE
Confidence             378888888888888887643 4667888888888775410       0          111 1345666677788888


Q ss_pred             EeCCCCcccccCccccCCCCCCEEECCCCcCCcCCC
Q 009136          502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP  537 (542)
Q Consensus       502 L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp~  537 (542)
                      |++++|+++.+|..+.  ++|+.|+|++|++.+++.
T Consensus       811 L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          811 LQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             EECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             EECCCCCCCccCHhhc--CCCCEEECCCCCCCccCh
Confidence            8888888877777654  578888888888776553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-40  Score=350.36  Aligned_cols=295  Identities=18%  Similarity=0.244  Sum_probs=238.7

Q ss_pred             HhhceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEc-CCCcccch--------------------------
Q 009136            9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLIL-AHNNIEKL--------------------------   60 (542)
Q Consensus         9 ~~l~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~l--------------------------   60 (542)
                      ..++.|+++++++. .+|..+..             +++|++|++ ++|.+...                          
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~-------------L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~  389 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQ-------------LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK  389 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGG-------------CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHH
T ss_pred             CCEEEEECccCCCCCcCchHHhc-------------cccceEeeecccccccccccccccccccccchhHHHHHHHhhhh
Confidence            45788999999998 78876655             899999999 66644311                          


Q ss_pred             ---------------hHhhc-----------CCCCCcEEEcCC--CCCCcchHhhhCCCCCcEEecCCCcccc-------
Q 009136           61 ---------------KEDLR-----------NLPLLTVLNVSH--NKLSELPAAIGELHMLKSLDVSFNSIMK-------  105 (542)
Q Consensus        61 ---------------~~~l~-----------~~~~L~~L~l~~--~~~~~l~~~~~~l~~L~~L~l~~~~~~~-------  105 (542)
                                     +..+.           ....++.+.+..  |.++.+|..+.++++|++|+|++|.++.       
T Consensus       390 ~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~  469 (876)
T 4ecn_A          390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDW  469 (876)
T ss_dssp             HHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             hhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccc
Confidence                           01111           111222222222  4555689999999999999999999998       


Q ss_pred             -----------CCcccc--ccCCccEEEcCCCcCC-cCCccccCCCCCCeEEccCCc-ccc--CCccccc-------CCC
Q 009136          106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLAD-------CSK  161 (542)
Q Consensus       106 -----------l~~~~~--~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~-------~~~  161 (542)
                                 +|..++  ++++|++|++++|.+. .+|..+.++++|++|++++|. +..  +|..++.       +++
T Consensus       470 ~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~  549 (876)
T 4ecn_A          470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK  549 (876)
T ss_dssp             SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT
T ss_pred             cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC
Confidence                       999987  9999999999999865 788899999999999999998 774  6665554       459


Q ss_pred             ccEEEccCCcccccch-hhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCC-CcEEEcCC
Q 009136          162 MSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN  239 (542)
Q Consensus       162 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~  239 (542)
                      |++|++++|.+..++. ..+..+++|++|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++
T Consensus       550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS
T ss_pred             ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC
Confidence            9999999999997776 35999999999999999999999 899999999999999999999989999999 99999999


Q ss_pred             CcCcccchhccCCCC--ccEEEcCCCcCcccchhh-------hcccccEEEccCCCCCCCChhhc-CcCCCcEEEcCCCc
Q 009136          240 NALSALPAELGKLSK--LGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLSGLPPEIG-KMTTLRKLLLTGNP  309 (542)
Q Consensus       240 ~~~~~~~~~~~~~~~--L~~L~l~~~~i~~~~~~~-------~~~~L~~l~l~~~~l~~l~~~l~-~~~~L~~L~l~~~~  309 (542)
                      |.+..+|..+...+.  |+.|++++|.+.......       ...+|+.|++++|.+..+|..+. .+++|+.|++++|.
T Consensus       629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            999999988777654  999999999987543221       12359999999999999988764 78999999999998


Q ss_pred             cccccccc
Q 009136          310 LRTLRSSL  317 (542)
Q Consensus       310 ~~~~~~~~  317 (542)
                      +..++...
T Consensus       709 L~~ip~~~  716 (876)
T 4ecn_A          709 MTSIPENS  716 (876)
T ss_dssp             CSCCCTTS
T ss_pred             CCccChHH
Confidence            87665443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.6e-40  Score=342.52  Aligned_cols=412  Identities=19%  Similarity=0.251  Sum_probs=278.9

Q ss_pred             cCCcEEEcCCCccc-chhHhhcCCCCCcEEEcCCCCCC-------------cchHhh---------------------h-
Q 009136           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAAI---------------------G-   88 (542)
Q Consensus        45 ~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~~~-------------~l~~~~---------------------~-   88 (542)
                      .+++.|+++++.+. .+|.++.++++|++|++++|.+.             .+|...                     . 
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            47999999999987 78899999999999999999651             111110                     0 


Q ss_pred             ------------------CCCCCcEEecC--CCccccCCccccccCCccEEEcCCCcCCc------------------CC
Q 009136           89 ------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (542)
Q Consensus        89 ------------------~l~~L~~L~l~--~~~~~~l~~~~~~l~~L~~L~l~~~~~~~------------------~~  130 (542)
                                        ....++.+.+.  .|.++.+|..++++++|++|++++|.++.                  +|
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip  240 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT  240 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence                              01112222222  34555677777788888888888887776                  77


Q ss_pred             cccc--CCCCCCeEEccCCccc-cCCcccccCCCccEEEccCCc-ccc-cchhhhhcc------ccCcEEEcCCcccCcc
Q 009136          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW------TMLTELIASKNLLNGM  199 (542)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~  199 (542)
                      ..++  ++++|++|++++|.+. .+|..++.+++|++|++++|+ ++. ..+..+..+      ++|++|++++|.++.+
T Consensus       241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i  320 (636)
T 4eco_A          241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF  320 (636)
T ss_dssp             SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred             hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence            7777  7888888888877754 567777777888888888776 664 222334443      7777777777777777


Q ss_pred             cc--ccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCcCcccchhccCCCC-ccEEEcCCCcCcccchhhhcc
Q 009136          200 PE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQL  275 (542)
Q Consensus       200 ~~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~~~~~~~~~~  275 (542)
                      |.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++......
T Consensus       321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~  399 (636)
T 4eco_A          321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK  399 (636)
T ss_dssp             CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred             CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence            77  6777777777777777777 666 677777777777777777777777777777 777777777666554433222


Q ss_pred             ---cccEEEccCCCCCC-CChhhc-------CcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccc
Q 009136          276 ---RLSVLDLSNNSLSG-LPPEIG-------KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT  344 (542)
Q Consensus       276 ---~L~~l~l~~~~l~~-l~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (542)
                         +|+.+++++|.+.+ .|..+.       .+.+                                             
T Consensus       400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~---------------------------------------------  434 (636)
T 4eco_A          400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN---------------------------------------------  434 (636)
T ss_dssp             CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC---------------------------------------------
T ss_pred             ccCccCEEECcCCcCCCcchhhhcccccccccCCC---------------------------------------------
Confidence               35555555555544 222232       2333                                             


Q ss_pred             hhhhhhhhhcccccccEEEecCCCCCCCCccccc-cCCccEEECCCCcccccChhc-cc-------CccCcEEEccCCcC
Q 009136          345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SS-------CASLQTLILSRNKI  415 (542)
Q Consensus       345 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~l~~~~-~~-------~~~L~~L~l~~~~l  415 (542)
                                    ++.++++++.+..+|..+.. +++|++|++++|.++.+|..+ ..       +++|++|++++|.+
T Consensus       435 --------------L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  500 (636)
T 4eco_A          435 --------------VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL  500 (636)
T ss_dssp             --------------EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred             --------------CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC
Confidence                          45555555555555555443 678888888888887777643 22       22788888888888


Q ss_pred             CCCChhhh-hCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhc-cccCchhh
Q 009136          416 KDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ-LREAPTDI  493 (542)
Q Consensus       416 ~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~l  493 (542)
                      +.++.... ..+++|++|++++|++..++ ..+..+++|+.|++++|+...                 .+. ...+|..+
T Consensus       501 ~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~~ls-----------------~N~l~~~~p~~l  562 (636)
T 4eco_A          501 TKLSDDFRATTLPYLVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQRDAQ-----------------GNRTLREWPEGI  562 (636)
T ss_dssp             CBCCGGGSTTTCTTCCEEECCSSCCSSCC-CGGGGCSSCCEEECCSCBCTT-----------------CCBCCCCCCTTG
T ss_pred             CccChhhhhccCCCcCEEECCCCCCCCcC-hhhhcCCCCCEEECCCCcccc-----------------cCcccccChHHH
Confidence            87765543 37888888888888888754 346778888888886654100                 111 13456666


Q ss_pred             hcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCcCC
Q 009136          494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP  536 (542)
Q Consensus       494 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~lp  536 (542)
                      ..+++|++|++++|+++.+|..+.  ++|+.|++++|++..++
T Consensus       563 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             GGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             hcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence            777888888888888888877654  78888888888877654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.3e-40  Score=343.94  Aligned_cols=415  Identities=19%  Similarity=0.268  Sum_probs=336.1

Q ss_pred             HhhceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccc-------------hh-------------
Q 009136            9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-------------LK-------------   61 (542)
Q Consensus         9 ~~l~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------l~-------------   61 (542)
                      ..++.|+++++++. .+|..+..             +++|++|++++|.+..             +|             
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~-------------L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~  147 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQ-------------LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK  147 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGG-------------CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHH
T ss_pred             CCEEEEEecCcccCCcCChHHhc-------------CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHH
Confidence            35788999999987 77766654             8999999999996510             00             


Q ss_pred             --------Hhhc-------------------CCCCCcEEEcC--CCCCCcchHhhhCCCCCcEEecCCCcccc-------
Q 009136           62 --------EDLR-------------------NLPLLTVLNVS--HNKLSELPAAIGELHMLKSLDVSFNSIMK-------  105 (542)
Q Consensus        62 --------~~l~-------------------~~~~L~~L~l~--~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-------  105 (542)
                              ..+.                   ....++.+.+.  +|.++.+|..+.++++|++|++++|.++.       
T Consensus       148 ~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  227 (636)
T 4eco_A          148 TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW  227 (636)
T ss_dssp             HHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC
T ss_pred             hhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc
Confidence                    0000                   01112222221  35666788899999999999999999997       


Q ss_pred             -----------CCcccc--ccCCccEEEcCCCcCC-cCCccccCCCCCCeEEccCCc-ccc--CCcccccC------CCc
Q 009136          106 -----------IPDEIG--SATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNC-ITS--LPEDLADC------SKM  162 (542)
Q Consensus       106 -----------l~~~~~--~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~--l~~~~~~~------~~L  162 (542)
                                 +|..++  ++++|++|++++|.+. .+|..+.++++|++|++++|. ++.  +|..++.+      ++|
T Consensus       228 ~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L  307 (636)
T 4eco_A          228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI  307 (636)
T ss_dssp             SCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred             cccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence                       999988  9999999999999866 788899999999999999998 774  77777665      999


Q ss_pred             cEEEccCCcccccch-hhhhccccCcEEEcCCcccC-ccccccCCCCcccEEEccCCCCccCCCCCcCCCC-CcEEEcCC
Q 009136          163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCS-LAEFYMGN  239 (542)
Q Consensus       163 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~l~l~~  239 (542)
                      ++|++++|.++.++. ..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |+.|++++
T Consensus       308 ~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~  386 (636)
T 4eco_A          308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH  386 (636)
T ss_dssp             CEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred             CEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence            999999999997765 25899999999999999998 888 888899999999999999999999999999 99999999


Q ss_pred             CcCcccchhccCCC--CccEEEcCCCcCcccchhhhc---------ccccEEEccCCCCCCCChhh-cCcCCCcEEEcCC
Q 009136          240 NALSALPAELGKLS--KLGTLDLHSNQLKEYCVEACQ---------LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTG  307 (542)
Q Consensus       240 ~~~~~~~~~~~~~~--~L~~L~l~~~~i~~~~~~~~~---------~~L~~l~l~~~~l~~l~~~l-~~~~~L~~L~l~~  307 (542)
                      |.+..+|..+...+  +|++|++++|.+.........         .+|+.+++++|.++.+|..+ ..+++|+.|++++
T Consensus       387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            99999988777655  899999999998864333222         35999999999999988764 5689999999999


Q ss_pred             CccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCcccc--ccCCccEE
Q 009136          308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW--EAGEITKL  385 (542)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~--~~~~L~~L  385 (542)
                      |.+..++...+....+                            .....++++++++++|.++.+|..+.  .+++|++|
T Consensus       467 N~l~~i~~~~~~~~~~----------------------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L  518 (636)
T 4eco_A          467 NMLTEIPKNSLKDENE----------------------------NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI  518 (636)
T ss_dssp             SCCSBCCSSSSEETTE----------------------------ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEE
T ss_pred             CCCCCcCHHHhccccc----------------------------cccccCCccEEECcCCcCCccChhhhhccCCCcCEE
Confidence            9988665444322100                            00112378999999999999998887  89999999


Q ss_pred             ECCCCcccccChhcccCccCcEEEcc------CCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecC
Q 009136          386 DLSRNSIQELPPELSSCASLQTLILS------RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (542)
Q Consensus       386 ~l~~~~l~~l~~~~~~~~~L~~L~l~------~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  459 (542)
                      ++++|.++.+|..+..+++|++|+++      +|.+.+..+..+..+++|++|++++|++..++.. +.  ++|+.|+++
T Consensus       519 ~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls  595 (636)
T 4eco_A          519 DLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-IT--PNISVLDIK  595 (636)
T ss_dssp             ECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CC--TTCCEEECC
T ss_pred             ECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-Hh--CcCCEEECc
Confidence            99999999999989999999999994      5667776677789999999999999999888765 33  899999999


Q ss_pred             CCcCCCCCC
Q 009136          460 YNIASLPEN  468 (542)
Q Consensus       460 ~n~~~~~~~  468 (542)
                      +|++..+..
T Consensus       596 ~N~l~~~~~  604 (636)
T 4eco_A          596 DNPNISIDL  604 (636)
T ss_dssp             SCTTCEEEC
T ss_pred             CCCCccccH
Confidence            998875543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-39  Score=341.51  Aligned_cols=474  Identities=21%  Similarity=0.260  Sum_probs=349.8

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchH-hhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~-~~~~   89 (542)
                      .+.+|++.+++++|.++.               +++++|++++|.++.++ .+|.++++|++|++++|.++.++. +|.+
T Consensus        34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~   98 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   98 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence            467999999999998873               46999999999999887 579999999999999999998854 8999


Q ss_pred             CCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCcccc--CCcccccCCCccEE
Q 009136           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L  165 (542)
                      +++|++|+|++|+++.+|. .|.++++|++|++++|+++.++. .++++++|++|++++|.+..  ++..+..+++|++|
T Consensus        99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A           99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence            9999999999999998865 58999999999999999998875 58899999999999999874  46778899999999


Q ss_pred             EccCCcccccchhhhhccccCc----EEEcCCcccCccccccCCCCcccEEEccCCCCc--cCCC---------------
Q 009136          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPS---------------  224 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~---------------  224 (542)
                      ++++|++..+....+..+.+++    .++++.+.++.++........+..+++.++...  ..+.               
T Consensus       179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            9999999988877777665543    678888888766554444445555555554322  0001               


Q ss_pred             ---------------CCcCCCCCcEEEcCCCcCc----ccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCC
Q 009136          225 ---------------SISGCCSLAEFYMGNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (542)
Q Consensus       225 ---------------~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~  285 (542)
                                     .+.....+....+..+...    ..+..+....+++.+.+.++.+...........++.+++.+|
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  338 (635)
T 4g8a_A          259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC  338 (635)
T ss_dssp             ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence                           1111222222222211111    112223334455555555555444444333344555555555


Q ss_pred             CCCCCCh--------------------hhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccch
Q 009136          286 SLSGLPP--------------------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK  345 (542)
Q Consensus       286 ~l~~l~~--------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (542)
                      .+..++.                    ....+++|+.++++.|.+......                             
T Consensus       339 ~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-----------------------------  389 (635)
T 4g8a_A          339 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC-----------------------------  389 (635)
T ss_dssp             EESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC-----------------------------
T ss_pred             cccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc-----------------------------
Confidence            4443321                    123455555555555554322100                             


Q ss_pred             hhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccC--hhcccCccCcEEEccCCcCCCCChhhh
Q 009136          346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAIL  423 (542)
Q Consensus       346 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~~L~~L~l~~~~l~~~~~~~l  423 (542)
                          .........++.+++..+.....+..+..+++|+.+++..++.....  ..+..+++++.++++.|.+.......+
T Consensus       390 ----~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          390 ----SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             ----CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ----ccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence                01112235678888888887777777778899999999988765533  257889999999999999999888888


Q ss_pred             hCCCCCcEEEccCCCCc-ccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCc-hhhhcCCCCC
Q 009136          424 TSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAP-TDILRLQQLR  500 (542)
Q Consensus       424 ~~l~~L~~L~L~~n~i~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~-~~l~~~~~L~  500 (542)
                      ..+++|+.|++++|.+. .+.+..|..+++|++|++++|+++.+.+..|.++++|++|++ .+.+..++ ..+..+++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            99999999999999744 455667899999999999999999998999999999999999 77888775 4588899999


Q ss_pred             EEeCCCCccccc-CccccCC-CCCCEEECCCCcCC
Q 009136          501 ILDLSQNSLQSI-PEGFKNL-TSLTELDLSDNNIS  533 (542)
Q Consensus       501 ~L~l~~~~l~~l-~~~l~~~-~~L~~L~l~~~~l~  533 (542)
                      .|++++|+++.+ |+.+..+ ++|+.|++++|+++
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999999987 6678888 58999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.2e-40  Score=339.47  Aligned_cols=446  Identities=22%  Similarity=0.251  Sum_probs=303.4

Q ss_pred             cCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcch-HhhhCCCCCcEEecCCCccccC-CccccccCCccEEEcC
Q 009136           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCS  122 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~  122 (542)
                      ...++++++++.++.+|..+.  ++|++|++++|.+..++ .+|..+++|++|++++|.++.+ |..|..+++|++|+++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            344666666666666665443  56666666666666553 3566666666666666666644 4456666666666666


Q ss_pred             CCcCCcCCccccCCCCCCeEEccCCccccCC--cccccCCCccEEEccCCcccccchhhhhccccC--cEEEcCCccc--
Q 009136          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL--  196 (542)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--  196 (542)
                      +|+++.+|..  .+++|++|++++|.+..++  ..+..+++|++|++++|.+....   +..++++  ++|++++|.+  
T Consensus       109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCCC
T ss_pred             CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccccc
Confidence            6666665544  5666666666666666543  45666666666666666665422   4444444  6667766665  


Q ss_pred             Cc-cccccCCCC-cccEEEccCCCCcc-CC-CCCcCCCCCcEEEcCCCcCc-----ccchhccCCCCccEEEcCCCcCcc
Q 009136          197 NG-MPETIGSLS-RLIRLDLHQNRILS-IP-SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE  267 (542)
Q Consensus       197 ~~-~~~~~~~~~-~L~~L~l~~~~~~~-~~-~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~~  267 (542)
                      .. .|..+..+. ..-.+++.+|.+.. ++ ..+..+++|+.+++++|...     .....+..+++++.+++.++.+..
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence            22 333333322 11144555555442 21 23456777788888777422     233456777888888777766553


Q ss_pred             -----cchhhhcccccEEEccCCCCC-CCChhh-----cCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCC
Q 009136          268 -----YCVEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN  336 (542)
Q Consensus       268 -----~~~~~~~~~L~~l~l~~~~l~-~l~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (542)
                           .+......+++++++++|.++ .+|..+     ..++.|+.+++..+.+ .++..        ....        
T Consensus       264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~--------~~~~--------  326 (562)
T 3a79_B          264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKE--------ALYS--------  326 (562)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHH--------HHHH--------
T ss_pred             HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChh--------hhhh--------
Confidence                 222333346889999988887 566655     4555555555555443 11100        0000        


Q ss_pred             CccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccc-cChhcccCccCcEEEccCCcC
Q 009136          337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKI  415 (542)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~~~~~~~~~L~~L~l~~~~l  415 (542)
                                      ......+++++++++.+...+. ...+++|++|++++|.++. +|..+..+++|++|++++|.+
T Consensus       327 ----------------~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  389 (562)
T 3a79_B          327 ----------------VFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL  389 (562)
T ss_dssp             ----------------HHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC
T ss_pred             ----------------hhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc
Confidence                            0012468899999998875542 2467899999999999887 677889999999999999999


Q ss_pred             CCCCh--hhhhCCCCCcEEEccCCCCcc-cCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCch
Q 009136          416 KDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT  491 (542)
Q Consensus       416 ~~~~~--~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~  491 (542)
                      ++++.  ..+..+++|++|++++|++.. ++...+..+++|++|++++|+++...+..+.  ++|+.|++ .+.+..+|.
T Consensus       390 ~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~  467 (562)
T 3a79_B          390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPK  467 (562)
T ss_dssp             CBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCT
T ss_pred             CCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccCh
Confidence            98764  457899999999999999988 7777789999999999999998755444333  68999999 888899999


Q ss_pred             hhhcCCCCCEEeCCCCcccccCcc-ccCCCCCCEEECCCCcCC
Q 009136          492 DILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS  533 (542)
Q Consensus       492 ~l~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~  533 (542)
                      .+..+++|+.|++++|+++.+|.. +..+++|+.|++++|+++
T Consensus       468 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            988999999999999999999887 999999999999999986

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-40  Score=337.21  Aligned_cols=423  Identities=22%  Similarity=0.207  Sum_probs=299.2

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchHhh
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI   87 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~   87 (542)
                      ++++.|+++++.+++++...+..            +++|++|++++|.+..+ |++|..+++|++|++++|.++.+|.. 
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred             ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence            57899999999999998776665            78899999999999977 78999999999999999999998777 


Q ss_pred             hCCCCCcEEecCCCcccc--CCccccccCCccEEEcCCCcCCcCCccccCCCCC--CeEEccCCcc--c-cCCcccccCC
Q 009136           88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS  160 (542)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~l~~~~~~~~  160 (542)
                       .+++|++|++++|.++.  +|..++.+++|++|++++|.+..  ..+..+++|  ++|++++|.+  . ..+..+..+.
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence             89999999999999985  57899999999999999999876  456777888  9999999988  3 4455555544


Q ss_pred             -CccEEEccCCccc-ccchhhhhccccCcEEEcCCcc-------cCccccccCCCCcccEEEccCCCCcc-----CCCCC
Q 009136          161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI  226 (542)
Q Consensus       161 -~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~  226 (542)
                       +...+++++|.+. .+....+..+++|+.+++++|.       +......+..+++|+.+++.++.+..     ++...
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  244 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV  244 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence             3445667777655 3455557788999999998885       33222367778889999998877652     11111


Q ss_pred             cCCCCCcEEEcCCCcCc-ccchhc-----cCCCCccEEEcCCCcCcccchhh-----hcccccEEEccCCCCCCCChhhc
Q 009136          227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEA-----CQLRLSVLDLSNNSLSGLPPEIG  295 (542)
Q Consensus       227 ~~~~~L~~l~l~~~~~~-~~~~~~-----~~~~~L~~L~l~~~~i~~~~~~~-----~~~~L~~l~l~~~~l~~l~~~l~  295 (542)
                       ..++|+.+++++|.+. .+|..+     ..+++|+.+++++|.+ .++...     ...+++.+++++|.+...+. ..
T Consensus       245 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~  321 (520)
T 2z7x_B          245 -WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PS  321 (520)
T ss_dssp             -HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CS
T ss_pred             -hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hh
Confidence             2458999999999888 777777     7888888888888877 444211     11347888888887766532 24


Q ss_pred             CcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCcc
Q 009136          296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE  375 (542)
Q Consensus       296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~  375 (542)
                      .+++|++|++++|.+...                                                          +|..
T Consensus       322 ~l~~L~~L~Ls~n~l~~~----------------------------------------------------------~~~~  343 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDT----------------------------------------------------------VFEN  343 (520)
T ss_dssp             SCCCCCEEECCSSCCCTT----------------------------------------------------------TTTT
T ss_pred             hCCcccEEEeECCccChh----------------------------------------------------------hhhh
Confidence            667777777777765431                                                          2333


Q ss_pred             ccccCCccEEECCCCcccc---cChhcccCccCcEEEccCCcCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCC
Q 009136          376 IWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (542)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~---l~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~  451 (542)
                      +..+++|++|++++|.++.   +|..+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.....+.  +
T Consensus       344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence            4445566666666666553   23345566666666666666665 4444455566666666666665433222121  4


Q ss_pred             CCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccc
Q 009136          452 MLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQS  511 (542)
Q Consensus       452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~  511 (542)
                      +|+.|++++|+++.+ +..+..+++|++|++ .+.+..+|.. +..+++|++|++++|++..
T Consensus       422 ~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          422 RIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            666666666666533 333335666666666 5555566655 6678999999999998773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.6e-37  Score=306.94  Aligned_cols=405  Identities=23%  Similarity=0.262  Sum_probs=240.1

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCC-cchHhhhCCCCC-------------cEEecCCCccccCCcc
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHML-------------KSLDVSFNSIMKIPDE  109 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~l~~L-------------~~L~l~~~~~~~l~~~  109 (542)
                      .++|++|+++++.++.+|.++.++++|++|++++|.+. .+|..+..+.+|             ++|++++|.++.+|..
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~   89 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL   89 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence            57899999999999889988999999999999888776 567777776654             8888888888877663


Q ss_pred             ccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEE
Q 009136          110 IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL  189 (542)
Q Consensus       110 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  189 (542)
                         .++|++|++++|.++.+|..   .++|++|++++|.+..++..   .++|++|++++|.++.++  .++.+++|++|
T Consensus        90 ---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L  158 (454)
T 1jl5_A           90 ---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP--ELQNSSFLKII  158 (454)
T ss_dssp             ---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEE
T ss_pred             ---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc--ccCCCCCCCEE
Confidence               36788888888888877653   36888888888887766532   268888888888887766  37888888888


Q ss_pred             EcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccc
Q 009136          190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC  269 (542)
Q Consensus       190 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~  269 (542)
                      ++++|.++.+|...   .+|+.|++++|.+..+| .+..+++|+.+++++|.+..+|...   ++|++|++++|.++.++
T Consensus       159 ~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp  231 (454)
T 1jl5_A          159 DVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP  231 (454)
T ss_dssp             ECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC
T ss_pred             ECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc
Confidence            88888887777543   47888888888887776 5778888888888888877766532   57888888888777766


Q ss_pred             hhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhh
Q 009136          270 VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI  349 (542)
Q Consensus       270 ~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (542)
                      .......|+.+++++|.++++|..   .++|+.+++++|.+..++.                                  
T Consensus       232 ~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~----------------------------------  274 (454)
T 1jl5_A          232 ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPE----------------------------------  274 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCC----------------------------------
T ss_pred             ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCc----------------------------------
Confidence            543444588888888877776653   3677888888877654321                                  


Q ss_pred             hhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCC
Q 009136          350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (542)
Q Consensus       350 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L  429 (542)
                           .+.++++++++++.+..++..   .++|++|++++|.++.++..   .++|++|++++|++++++.    .+++|
T Consensus       275 -----~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~----~~~~L  339 (454)
T 1jl5_A          275 -----LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPA----LPPRL  339 (454)
T ss_dssp             -----CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCC----CCTTC
T ss_pred             -----ccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccccccc----cCCcC
Confidence                 124577888888877765432   36788888888877765531   2478888888888877654    25788


Q ss_pred             cEEEccCCCCcccCCCccCCCCCCceEecCCCcCCC--CCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCC
Q 009136          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL--PENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQN  507 (542)
Q Consensus       430 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~  507 (542)
                      ++|++++|.++.++.    .+++|++|++++|+++.  ..+..+..+.      .......+|.   .+++|+.|++++|
T Consensus       340 ~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~------~n~~~~~i~~---~~~~L~~L~ls~N  406 (454)
T 1jl5_A          340 ERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLR------MNSHLAEVPE---LPQNLKQLHVETN  406 (454)
T ss_dssp             CEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEE------CCC-----------------------
T ss_pred             CEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhh------hccccccccc---ccCcCCEEECCCC
Confidence            888888888877664    36788888888887776  3333333221      1111123333   2478888999998


Q ss_pred             cccccCccccCCCCCCEEECCCCcCCc
Q 009136          508 SLQSIPEGFKNLTSLTELDLSDNNISA  534 (542)
Q Consensus       508 ~l~~l~~~l~~~~~L~~L~l~~~~l~~  534 (542)
                      +++.+|. +  -++++.|.+.+|.+..
T Consensus       407 ~l~~~~~-i--P~sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          407 PLREFPD-I--PESVEDLRMNSERVVD  430 (454)
T ss_dssp             ---------------------------
T ss_pred             cCCcccc-c--hhhHhheeCcCcccCC
Confidence            8875432 1  1357777888877653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.9e-37  Score=304.95  Aligned_cols=405  Identities=24%  Similarity=0.270  Sum_probs=282.5

Q ss_pred             HHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCccc-chhHhhcCCCC-------------CcEE
Q 009136            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPL-------------LTVL   73 (542)
Q Consensus         8 ~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~-------------L~~L   73 (542)
                      .+.+++++++++.++++|.++..             +++|++|++++|.+. .+|..+..+++             +++|
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~-------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L   76 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAEN-------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL   76 (454)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred             cccchhhhcccCchhhCChhHhc-------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence            57899999999999999988755             899999999999887 67888877775             4999


Q ss_pred             EcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCC
Q 009136           74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP  153 (542)
Q Consensus        74 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~  153 (542)
                      ++++|.++.+|..   .++|++|++++|.++.+|..   .++|++|++++|++..++..   .++|++|++++|.+..+|
T Consensus        77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp  147 (454)
T 1jl5_A           77 ELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP  147 (454)
T ss_dssp             ECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred             EecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc
Confidence            9999999988762   47899999999999988864   47899999999999887643   269999999999999988


Q ss_pred             cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCc
Q 009136          154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA  233 (542)
Q Consensus       154 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  233 (542)
                       .++.+++|++|++++|.++.++..    ..+|++|++++|.++.+| .+..+++|+.|++++|.+..+|...   ++|+
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~  218 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE  218 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred             -ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence             699999999999999999876542    359999999999999988 6899999999999999998876543   5999


Q ss_pred             EEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccc
Q 009136          234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL  313 (542)
Q Consensus       234 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~  313 (542)
                      .+++++|.+..+|. +..+++|++|++++|.++.++..  ...++.+++++|.+.++|..   .++|+.+++++|.+..+
T Consensus       219 ~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          219 SIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             EEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred             EEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence            99999999998885 88999999999999999987653  36799999999999998764   47899999999988654


Q ss_pred             cccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCccc
Q 009136          314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ  393 (542)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  393 (542)
                      +.                                       .++++++++++++.+..++..   .++|++|++++|.++
T Consensus       293 ~~---------------------------------------~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~  330 (454)
T 1jl5_A          293 SE---------------------------------------LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLI  330 (454)
T ss_dssp             SC---------------------------------------CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCS
T ss_pred             cC---------------------------------------cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccc
Confidence            31                                       124789999999988865431   358999999999999


Q ss_pred             ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCC
Q 009136          394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS  473 (542)
Q Consensus       394 ~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  473 (542)
                      .+|..   +++|++|++++|.++.++.    .+++|++|++++|++..++..    ...+..|..  |......+   ..
T Consensus       331 ~lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~i----p~~l~~L~~--n~~~~~i~---~~  394 (454)
T 1jl5_A          331 ELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI----PESVEDLRM--NSHLAEVP---EL  394 (454)
T ss_dssp             CCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC----CTTCCEEEC--CC-----------
T ss_pred             ccccc---CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCC----hHHHHhhhh--cccccccc---cc
Confidence            98864   6899999999999998876    479999999999999875421    123333332  32222222   13


Q ss_pred             CchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCccc
Q 009136          474 LPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       474 ~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~  510 (542)
                      +++|+.|++ .+.+..+|..   ..+++.|.+++|.+.
T Consensus       395 ~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          395 PQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV  429 (454)
T ss_dssp             --------------------------------------
T ss_pred             cCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence            467777777 5555433221   245777788887655

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.6e-38  Score=321.04  Aligned_cols=441  Identities=20%  Similarity=0.200  Sum_probs=328.9

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHh
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAA   86 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~   86 (542)
                      ...+.+|+++++++++|.+++               +++++|++++|.+..++ .+|..+++|++|++++|.++.+ |.+
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~   95 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV   95 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred             CCCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence            344789999999999998774               47999999999999876 6899999999999999999987 668


Q ss_pred             hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCC--ccccCCCCCCeEEccCCccccCCcccccCCCc--
Q 009136           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM--  162 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--  162 (542)
                      |..+++|++|++++|.++.+|..  .+++|++|++++|++..++  ..+.++++|++|++++|.+...  .+..+++|  
T Consensus        96 ~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L  171 (562)
T 3a79_B           96 FLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHL  171 (562)
T ss_dssp             TTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCE
T ss_pred             hCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhcee
Confidence            99999999999999999999877  8999999999999999764  6899999999999999998753  45556666  


Q ss_pred             cEEEccCCcc--cccchhhhhccc-cCcEEEcCCcccCc-cc-cccCCCCcccEEEccCCCCc-----cCCCCCcCCCCC
Q 009136          163 SKLDVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNG-MP-ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL  232 (542)
Q Consensus       163 ~~L~l~~~~~--~~~~~~~~~~~~-~L~~L~l~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L  232 (542)
                      ++|++++|.+  .......+..+. ..-.+++++|.+.. ++ ..+..+++|+.+++++|...     .....+...+++
T Consensus       172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L  251 (562)
T 3a79_B          172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL  251 (562)
T ss_dssp             EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred             eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence            9999999988  555544455443 12245677776643 22 34567888999999887521     222345667777


Q ss_pred             cEEEcCCCcCc-----ccchhccCCCCccEEEcCCCcCc-ccchhhhc---cc---ccEEEccCCCCCCCCh-hhc---C
Q 009136          233 AEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ---LR---LSVLDLSNNSLSGLPP-EIG---K  296 (542)
Q Consensus       233 ~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~---~~---L~~l~l~~~~l~~l~~-~l~---~  296 (542)
                      +.+++.++.+.     .++..+ ..++|++|++++|.+. .++...+.   ..   |+.+++..+.+ .+|. .+.   .
T Consensus       252 ~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~  329 (562)
T 3a79_B          252 LNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFA  329 (562)
T ss_dssp             EEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHH
T ss_pred             eEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhc
Confidence            77777766555     222222 2347888888888776 44443311   22   44444444544 4442 222   2


Q ss_pred             cCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCC-CCcc
Q 009136          297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-IPSE  375 (542)
Q Consensus       297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~  375 (542)
                      ..+++.+++++|.+.....                                     ....+++++++++++.+.. ++..
T Consensus       330 ~~~L~~L~l~~n~~~~~~~-------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~  372 (562)
T 3a79_B          330 EMNIKMLSISDTPFIHMVC-------------------------------------PPSPSSFTFLNFTQNVFTDSVFQG  372 (562)
T ss_dssp             TCCCSEEEEESSCCCCCCC-------------------------------------CSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             cCcceEEEccCCCcccccC-------------------------------------ccCCCCceEEECCCCccccchhhh
Confidence            2568888888876633210                                     0123567888888888775 6667


Q ss_pred             ccccCCccEEECCCCcccccC---hhcccCccCcEEEccCCcCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCC
Q 009136          376 IWEAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (542)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~  451 (542)
                      +..+++|++|++++|.++.++   ..+..+++|++|++++|.+++ ++...+..+++|++|++++|++++.....+.  +
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~  450 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P  450 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence            778889999999999888755   457888999999999999887 7777778889999999999988754332222  6


Q ss_pred             CCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCccc
Q 009136          452 MLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~  510 (542)
                      +|++|++++|+++.+... +..+++|+.|++ .+.+..+|.. +..+++|+.|++++|++.
T Consensus       451 ~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          451 KVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             cCCEEECCCCcCcccChh-hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            899999999988865444 448899999999 7888888887 888999999999999876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.8e-36  Score=315.16  Aligned_cols=475  Identities=20%  Similarity=0.191  Sum_probs=358.0

Q ss_pred             CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCCc-cccccCCccEEEcCCC
Q 009136           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSN  124 (542)
Q Consensus        47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~  124 (542)
                      -++.+.++..++++|..++  +++++|+|++|.++.++. +|.++++|++|+|++|.++.+++ +|.++++|++|++++|
T Consensus        33 ~~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           33 NITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             TTEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            4567888888999997765  489999999999999865 89999999999999999998854 6899999999999999


Q ss_pred             cCCcCCc-cccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccc-hhhhhccccCcEEEcCCcccCccc-
Q 009136          125 QLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMP-  200 (542)
Q Consensus       125 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-  200 (542)
                      +++.+|. .|.++++|++|++++|.+..++.. ++.+++|++|++++|.+..+. +..+..+++|++|++++|.++.++ 
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence            9998875 578999999999999999988764 899999999999999998654 455788999999999999997764 


Q ss_pred             cccCCCCc----ccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc--ccchhccCCCCccEEEcC-------------
Q 009136          201 ETIGSLSR----LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLH-------------  261 (542)
Q Consensus       201 ~~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~-------------  261 (542)
                      ..+..+.+    ...++++.|.+..++........++.+++.++...  ..+..+..+..++...+.             
T Consensus       191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~  270 (635)
T 4g8a_A          191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF  270 (635)
T ss_dssp             GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred             ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence            33433332    45788899988877666556666777888777544  222334444444433321             


Q ss_pred             -----------------CCcCc----cc-chhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccC
Q 009136          262 -----------------SNQLK----EY-CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN  319 (542)
Q Consensus       262 -----------------~~~i~----~~-~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  319 (542)
                                       .+...    .. ........++.+++.++.+..++. +.....++.+++.++.+..+....+.
T Consensus       271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~  349 (635)
T 4g8a_A          271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLK  349 (635)
T ss_dssp             CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred             cccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcccch
Confidence                             11100    00 011112237778877776665543 66678899999999887655432211


Q ss_pred             CCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC---CCCccccccCCccEEECCCCcccccC
Q 009136          320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQELP  396 (542)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~  396 (542)
                      .            +..........    .........+.++.++++++.+.   ..+.......+++++++..+....++
T Consensus       350 ~------------L~~l~l~~n~~----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~  413 (635)
T 4g8a_A          350 S------------LKRLTFTSNKG----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS  413 (635)
T ss_dssp             T------------CCEEEEESCCS----CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC
T ss_pred             h------------hhhcccccccC----CCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc
Confidence            1            00000000000    00001112467888999888775   34455566789999999999888888


Q ss_pred             hhcccCccCcEEEccCCcCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcC-CCCCCCCCCCC
Q 009136          397 PELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSL  474 (542)
Q Consensus       397 ~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~~~~  474 (542)
                      ..+..+++|+.++++++.... .+...+..+++++.+++++|.+..+....+..+++|+.|++++|.. ....+..|..+
T Consensus       414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l  493 (635)
T 4g8a_A          414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  493 (635)
T ss_dssp             SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence            788899999999999886654 4455678999999999999999988888899999999999999964 44567789999


Q ss_pred             chhHHHHH-hhccccC-chhhhcCCCCCEEeCCCCccccc-CccccCCCCCCEEECCCCcCCcCCCCCC
Q 009136          475 PHLQELYL-RMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELV  540 (542)
Q Consensus       475 ~~L~~L~l-~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~lp~~~~  540 (542)
                      ++|++|++ .+.+..+ |..+.++++|++|++++|+++.+ +..|..+++|+.|++++|+|+.+++..+
T Consensus       494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            99999999 7777766 56689999999999999999988 5569999999999999999998877643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.2e-35  Score=294.92  Aligned_cols=348  Identities=26%  Similarity=0.399  Sum_probs=214.8

Q ss_pred             CCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccC
Q 009136           67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN  146 (542)
Q Consensus        67 ~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  146 (542)
                      +++++.|++.++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +.++++|++|++++
T Consensus        45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  121 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence            4578888888888877763 6778888888888888887766 7788888888888888877765 77788888888888


Q ss_pred             CccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCC
Q 009136          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI  226 (542)
Q Consensus       147 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  226 (542)
                      |.+..++. +..+++|++|++++|.+..+..  +..+++|++|+++ +.+..++. +..+++|+.|++++|.+..++ .+
T Consensus       122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l  195 (466)
T 1o6v_A          122 NQITDIDP-LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDIS-VL  195 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             CCCCCChH-HcCCCCCCEEECCCCccCCChh--hccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCCh-hh
Confidence            87777654 7777777888777777766543  6666777777764 33333322 555666666666666655442 34


Q ss_pred             cCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcC
Q 009136          227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT  306 (542)
Q Consensus       227 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~  306 (542)
                      ..+++|+.|++++|.+..++. ++.+++|++|++++|.++.++......+|+.+++++|.+.+++. +..+++|+.|+++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~  273 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLG  273 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred             ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECC
Confidence            555566666666665554433 44455555555555555444332222334444444444443332 3333334444333


Q ss_pred             CCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEE
Q 009136          307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD  386 (542)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~  386 (542)
                      +|                                                           .+..++. +..+++|++|+
T Consensus       274 ~n-----------------------------------------------------------~l~~~~~-~~~l~~L~~L~  293 (466)
T 1o6v_A          274 AN-----------------------------------------------------------QISNISP-LAGLTALTNLE  293 (466)
T ss_dssp             SS-----------------------------------------------------------CCCCCGG-GTTCTTCSEEE
T ss_pred             CC-----------------------------------------------------------ccCcccc-ccCCCccCeEE
Confidence            33                                                           3333322 34456666777


Q ss_pred             CCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCC
Q 009136          387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP  466 (542)
Q Consensus       387 l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~  466 (542)
                      +++|.++.++. +..+++|++|++++|.+++..+  +..+++|++|++++|++.++.  .+..+++|+.|++++|++++.
T Consensus       294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC
T ss_pred             cCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCcc
Confidence            77666666554 5666667777777776666554  456667777777666666552  356666666666666665433


Q ss_pred             CCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCc
Q 009136          467 ENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE  514 (542)
Q Consensus       467 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~  514 (542)
                      .+                        +..+++|+.|++++|.++.+|.
T Consensus       369 ~~------------------------~~~l~~L~~L~l~~n~~~~~p~  392 (466)
T 1o6v_A          369 TP------------------------LANLTRITQLGLNDQAWTNAPV  392 (466)
T ss_dssp             GG------------------------GTTCTTCCEEECCCEEEECCCB
T ss_pred             ch------------------------hhcCCCCCEEeccCCcccCCch
Confidence            21                        3445677777777777665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.8e-35  Score=294.42  Aligned_cols=346  Identities=25%  Similarity=0.358  Sum_probs=276.4

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      ++++++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus        45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  121 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence            467999999998888876 47788999999999998888866 8889999999999998888876 88899999999999


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  203 (542)
                      |.+..++. +.++++|++|++++|.+..++ .+..+++|++|+++ +.+.....  +..+++|++|++++|.++.++ .+
T Consensus       122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l  195 (466)
T 1o6v_A          122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS-VL  195 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence            98888764 888899999999999888765 47888999999986 34444433  888899999999999888775 47


Q ss_pred             CCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEcc
Q 009136          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS  283 (542)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~  283 (542)
                      ..+++|+.|++++|.+..++. +..+++|+.|++++|.+..++ .+..+++|++|++++|.+...+......+|+.++++
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  273 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG  273 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence            788899999999998886644 777899999999999988774 578889999999999998887765555669999999


Q ss_pred             CCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEE
Q 009136          284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS  363 (542)
Q Consensus       284 ~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  363 (542)
                      +|.+.+++. +..+++|+.|++++|.+..++                                                 
T Consensus       274 ~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-------------------------------------------------  303 (466)
T 1o6v_A          274 ANQISNISP-LAGLTALTNLELNENQLEDIS-------------------------------------------------  303 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEECCSSCCSCCG-------------------------------------------------
T ss_pred             CCccCcccc-ccCCCccCeEEcCCCcccCch-------------------------------------------------
Confidence            999998876 788899999999888764331                                                 


Q ss_pred             ecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccC
Q 009136          364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP  443 (542)
Q Consensus       364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~  443 (542)
                                 .+..+++|++|++++|.+++++. +..+++|++|++++|.+++++  .+..+++|++|++++|++.++.
T Consensus       304 -----------~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~  369 (466)
T 1o6v_A          304 -----------PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLT  369 (466)
T ss_dssp             -----------GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG
T ss_pred             -----------hhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccc
Confidence                       13446677777777777776654 567777888888877777763  4677778888888877777665


Q ss_pred             CCccCCCCCCceEecCCCcCCCC
Q 009136          444 SDGFKDIPMLQILDLSYNIASLP  466 (542)
Q Consensus       444 ~~~~~~~~~L~~L~l~~n~~~~~  466 (542)
                      +  +..+++|+.|++++|.++..
T Consensus       370 ~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          370 P--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             G--GTTCTTCCEEECCCEEEECC
T ss_pred             h--hhcCCCCCEEeccCCcccCC
Confidence            4  67777788888887777653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.8e-34  Score=289.54  Aligned_cols=380  Identities=22%  Similarity=0.259  Sum_probs=226.7

Q ss_pred             CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccc-cC-CccccccCCccEEEcCC
Q 009136           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS  123 (542)
Q Consensus        47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~  123 (542)
                      -+.++.+++.++.+|. +.  ++|++|++++|.++.+ +..+.++++|++|++++|.+. .+ +..|..+++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            4568888888888876 33  7889999999988876 667888899999999888775 44 45688888888888888


Q ss_pred             CcCCcC-CccccCCCCCCeEEccCCcccc-CCcc--cccCCCccEEEccCCcccccchh-hhhccccCcEEEcCCcccCc
Q 009136          124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPED--LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNG  198 (542)
Q Consensus       124 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~  198 (542)
                      |++..+ |..+.++++|++|++++|.+.. ++..  +..+++|++|++++|.+..+.+. .+..+++|++|++++|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            888755 5677788888888888887764 2222  66777777777777777766443 36666777777777766654


Q ss_pred             cc-cccCCC--CcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhh--
Q 009136          199 MP-ETIGSL--SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC--  273 (542)
Q Consensus       199 ~~-~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~--  273 (542)
                      ++ ..+..+  .+++.++++++.+..++......              .....+..+++|++|++++|.++.......  
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCCCcccccchhhhhc
Confidence            32 233222  44555555555544332211000              000112234556666666665543222111  


Q ss_pred             ---cccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhh
Q 009136          274 ---QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (542)
Q Consensus       274 ---~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (542)
                         ..+++.+++++|...........+..             ..                                    
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------------~~------------------------------------  265 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKD-------------PD------------------------------------  265 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCC-------------CC------------------------------------
T ss_pred             cccccceeeEeeccccccccccchhhhcc-------------Cc------------------------------------
Confidence               12244444444432211000000000             00                                    


Q ss_pred             hhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCC
Q 009136          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (542)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L  429 (542)
                                          .........++|++|++++|.++.+ |..+..+++|++|++++|.++++++..+..+++|
T Consensus       266 --------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          266 --------------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             --------------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             --------------------ccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence                                0000001134667777777766653 4456667777777777777776666666677777


Q ss_pred             cEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcc
Q 009136          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL  509 (542)
Q Consensus       430 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l  509 (542)
                      ++|++++|.+.++....|..+++|++|++++|.++...+..+.                      .+++|++|++++|++
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----------------------~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL----------------------GLPNLKELALDTNQL  383 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT----------------------TCTTCCEEECCSSCC
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc----------------------ccccccEEECCCCcc
Confidence            7777777777666656666677777777777766544433333                      345666666666666


Q ss_pred             cccCc-cccCCCCCCEEECCCCcCCc
Q 009136          510 QSIPE-GFKNLTSLTELDLSDNNISA  534 (542)
Q Consensus       510 ~~l~~-~l~~~~~L~~L~l~~~~l~~  534 (542)
                      +.+|. .+..+++|+.|++++|+++.
T Consensus       384 ~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          384 KSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCCHhHhccCCcccEEEccCCCccc
Confidence            66543 35666666666666666653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=6.5e-35  Score=292.65  Aligned_cols=371  Identities=20%  Similarity=0.248  Sum_probs=280.3

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCC-cc-hHhhh
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLS-EL-PAAIG   88 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~-~l-~~~~~   88 (542)
                      +.+++++++++++|. +               .++|++|++++|.+..+ |..|.++++|++|++++|.+. .+ +.+|.
T Consensus        13 ~~~~c~~~~l~~lp~-l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~   76 (455)
T 3v47_A           13 YNAICINRGLHQVPE-L---------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR   76 (455)
T ss_dssp             TEEECCSSCCSSCCC-C---------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT
T ss_pred             cccCcCCCCcccCCC-C---------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc
Confidence            468999999999998 3               35799999999999976 678999999999999999987 45 55899


Q ss_pred             CCCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCc-CCc--cccCCCCCCeEEccCCccccC-Ccc-cccCCCc
Q 009136           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPS--SLGRCLNLSDFKASNNCITSL-PED-LADCSKM  162 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~l-~~~-~~~~~~L  162 (542)
                      .+++|++|++++|.++.+ |..+..+++|++|++++|.+.. .+.  .+..+++|++|++++|.+..+ +.. +..+++|
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            999999999999999865 7789999999999999999984 333  388899999999999999977 444 8899999


Q ss_pred             cEEEccCCcccccchhhhhcc--ccCcEEEcCCcccCccccc---------cCCCCcccEEEccCCCCcc-CCCCCc---
Q 009136          163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGMPET---------IGSLSRLIRLDLHQNRILS-IPSSIS---  227 (542)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~-~~~~~~---  227 (542)
                      ++|++++|.+..+....+..+  .+++.++++++.+..++..         +..+++|+.|++++|.+.. .+..+.   
T Consensus       157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence            999999999998877767766  7899999999999876532         2234566667776666552 222221   


Q ss_pred             CCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCC-ChhhcCcCCCcEEEcC
Q 009136          228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLT  306 (542)
Q Consensus       228 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~  306 (542)
                      ..++++.+++++|...........++.+.     ...+    .......++.+++++|.+.++ +..+..+++|+.|+++
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  307 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSFGHTNFKDPD-----NFTF----KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA  307 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCTTCCSSCCCC-----TTTT----GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccceeeEeeccccccccccchhhhccCc-----cccc----ccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence            12455566665554332111111110000     0000    000113466666666666653 4456667777777777


Q ss_pred             CCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEE
Q 009136          307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD  386 (542)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~  386 (542)
                      +|.+..+.                                                          +..+..+++|++|+
T Consensus       308 ~n~l~~~~----------------------------------------------------------~~~~~~l~~L~~L~  329 (455)
T 3v47_A          308 QNEINKID----------------------------------------------------------DNAFWGLTHLLKLN  329 (455)
T ss_dssp             TSCCCEEC----------------------------------------------------------TTTTTTCTTCCEEE
T ss_pred             CCcccccC----------------------------------------------------------hhHhcCcccCCEEE
Confidence            76653321                                                          23455678999999


Q ss_pred             CCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136          387 LSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (542)
Q Consensus       387 l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  465 (542)
                      +++|.++.+ +..+..+++|++|++++|.++++.+..+..+++|++|++++|+++.++...+..+++|++|++++|.+..
T Consensus       330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            999999886 4568899999999999999999888888999999999999999999888888999999999999998874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2.1e-34  Score=286.28  Aligned_cols=361  Identities=20%  Similarity=0.252  Sum_probs=206.3

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      +++|++|++++|.+..+| .+..+++|++|++++|.++.++  +..+++|++|++++|.++.++  ++.+++|++|++++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT  115 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence            566666666666666655 4666666666666666666653  566666666666666666553  55666666666666


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC-cccccchhhhhccccCcEEEcCCcccCccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (542)
                      |+++.++  +..+++|++|++++|.+..++  +..+++|++|++++| .+..+   .+..+++|++|++++|.++.+|  
T Consensus       116 N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~--  186 (457)
T 3bz5_A          116 NKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD--  186 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC--
T ss_pred             CcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec--
Confidence            6666553  556666666666666665542  555566666666655 23332   1444555555555555555544  


Q ss_pred             cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEc
Q 009136          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (542)
Q Consensus       203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l  282 (542)
                      +..+++|+.|++++|.+..+  .+..+++|+.|++++|.+..+|  +..+++|+                      .+++
T Consensus       187 l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~----------------------~L~l  240 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLT----------------------YFDC  240 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCS----------------------EEEC
T ss_pred             cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCC----------------------EEEe
Confidence            44445555555555554443  2444445555555555444443  34444444                      4444


Q ss_pred             cCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEE
Q 009136          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (542)
Q Consensus       283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (542)
                      ++|.+++++  ...+++|+.++++++.+                                                 +.+
T Consensus       241 ~~N~l~~~~--~~~l~~L~~L~l~~n~L-------------------------------------------------~~L  269 (457)
T 3bz5_A          241 SVNPLTELD--VSTLSKLTTLHCIQTDL-------------------------------------------------LEI  269 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTTCCC-------------------------------------------------SCC
T ss_pred             eCCcCCCcC--HHHCCCCCEEeccCCCC-------------------------------------------------CEE
Confidence            444444443  33455666666655543                                                 233


Q ss_pred             EecCCCCC-CCCccccccCCccEEECCCCcc-cccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136          363 SLEGMNLS-AIPSEIWEAGEITKLDLSRNSI-QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (542)
Q Consensus       363 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l-~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~  440 (542)
                      +++++... .+|  ...+++|+.|++++|.. ..+|.   ..++|+.|++++             +++|++|++++|+++
T Consensus       270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~  331 (457)
T 3bz5_A          270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQ-------------NPKLVYLYLNNTELT  331 (457)
T ss_dssp             CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTT-------------CTTCCEEECTTCCCS
T ss_pred             ECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhh-------------cccCCEEECCCCccc
Confidence            33443322 222  23467788888887753 33442   334555554443             478888888888888


Q ss_pred             ccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCccc-ccCcc-cc
Q 009136          441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEG-FK  517 (542)
Q Consensus       441 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~l~~~-l~  517 (542)
                      .+.   +..+++|+.|++++|++++        ++.|+.|.+ .+.+...    ..+..|+.+++++|+++ .+|.. +.
T Consensus       332 ~l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          332 ELD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             CCC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             ccc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhHhc
Confidence            762   7788888888888888865        244555555 3333222    24567788888888877 56554 33


Q ss_pred             CCCCCCEEECC
Q 009136          518 NLTSLTELDLS  528 (542)
Q Consensus       518 ~~~~L~~L~l~  528 (542)
                      ...+.......
T Consensus       397 ~~~~~~~~~~~  407 (457)
T 3bz5_A          397 QFGNPMNIEPG  407 (457)
T ss_dssp             TTSCCCEEEES
T ss_pred             ccCceeeccCC
Confidence            33444444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.7e-34  Score=282.26  Aligned_cols=355  Identities=25%  Similarity=0.324  Sum_probs=290.2

Q ss_pred             HHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcch
Q 009136            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (542)
Q Consensus         5 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~   84 (542)
                      +..++++++|+++++.++++| .+ ..            +++|++|++++|.++.++  +..+++|++|++++|.++.++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l-~~------------l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GI-EK------------LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TG-GG------------CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             hhHcCCCCEEEccCCCcccCh-hh-cc------------cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence            567889999999999999887 33 22            789999999999999885  889999999999999999885


Q ss_pred             HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCc-cccCCcccccCCCcc
Q 009136           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMS  163 (542)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~  163 (542)
                        +..+++|++|++++|.++.++  +..+++|++|++++|+++.++  +..+++|++|++++|. +..+  .+..+++|+
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence              889999999999999999886  889999999999999999874  8899999999999994 4455  578899999


Q ss_pred             EEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc
Q 009136          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  243 (542)
                      +|++++|.++.++   +..+++|++|++++|.++.++  +..+++|+.|++++|.+..+|  +..+++|+.+++++|.+.
T Consensus       174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred             EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence            9999999999875   788999999999999998874  788999999999999999986  889999999999999999


Q ss_pred             ccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCC-CChhhcCcCCCcEEEcCCCccccccccccCCCc
Q 009136          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT  322 (542)
Q Consensus       244 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  322 (542)
                      .+|  +..+++|+.++++.+.            ++.+++++|.+.+ +|  +..+++|+.|++++|...           
T Consensus       247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l-----------  299 (457)
T 3bz5_A          247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL-----------  299 (457)
T ss_dssp             CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC-----------
T ss_pred             CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCccc-----------
Confidence            876  5678899999988764            4567788886544 32  467889999999998642           


Q ss_pred             HHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccC
Q 009136          323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC  402 (542)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~  402 (542)
                                                           ..+......+..+  .+..+++|++|++++|.++.++  +..+
T Consensus       300 -------------------------------------~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~--l~~l  338 (457)
T 3bz5_A          300 -------------------------------------YLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD--VSHN  338 (457)
T ss_dssp             -------------------------------------CEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC--CTTC
T ss_pred             -------------------------------------ceeccCCCcceEe--chhhcccCCEEECCCCcccccc--cccC
Confidence                                                 1112222223333  1344578899999999888875  7888


Q ss_pred             ccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCC
Q 009136          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF  471 (542)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  471 (542)
                      ++|+.|++++|+++++        +.|..|.+.+|.+...     ..+..|+.+++++|++++..|..+
T Consensus       339 ~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          339 TKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             TTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             CcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence            9999999999988763        4566667777776543     245667888889888876555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.5e-32  Score=265.21  Aligned_cols=306  Identities=20%  Similarity=0.338  Sum_probs=197.7

Q ss_pred             cCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEc
Q 009136           65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA  144 (542)
Q Consensus        65 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  144 (542)
                      ..+++|++|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL  117 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence            345677777777777766643 6666777777777776666655 666667777777766666553 4556666666666


Q ss_pred             cCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCC
Q 009136          145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS  224 (542)
Q Consensus       145 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  224 (542)
                      ++|.+..++. +..+++|++|++++|....                        .+..+..+++|+.|++++|.+..++.
T Consensus       118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~  172 (347)
T 4fmz_A          118 NEDNISDISP-LANLTKMYSLNLGANHNLS------------------------DLSPLSNMTGLNYLTVTESKVKDVTP  172 (347)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECTTCTTCC------------------------CCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             cCCcccCchh-hccCCceeEEECCCCCCcc------------------------cccchhhCCCCcEEEecCCCcCCchh
Confidence            6666555543 5555555555555553222                        12224444555555555554443322


Q ss_pred             CCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEE
Q 009136          225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL  304 (542)
Q Consensus       225 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~  304 (542)
                       +..+++|+.+++++|.+..++. +..+++|+.+++++|.+...+......+|+.+++++|.++.++. +..+++|+.|+
T Consensus       173 -~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  249 (347)
T 4fmz_A          173 -IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLE  249 (347)
T ss_dssp             -GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             -hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEE
Confidence             4455555555555555555544 55556666666666655554443333446666666666666555 66677777777


Q ss_pred             cCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccE
Q 009136          305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK  384 (542)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~  384 (542)
                      +++|.+..                                                           + ..+..+++|++
T Consensus       250 l~~n~l~~-----------------------------------------------------------~-~~~~~l~~L~~  269 (347)
T 4fmz_A          250 IGTNQISD-----------------------------------------------------------I-NAVKDLTKLKM  269 (347)
T ss_dssp             CCSSCCCC-----------------------------------------------------------C-GGGTTCTTCCE
T ss_pred             CCCCccCC-----------------------------------------------------------C-hhHhcCCCcCE
Confidence            77765532                                                           2 23445678889


Q ss_pred             EECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCC
Q 009136          385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (542)
Q Consensus       385 L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  464 (542)
                      |++++|.++.++ .+..+++|++|++++|.+++.++..+..+++|++|++++|+++.+.+  +..+++|++|++++|.++
T Consensus       270 L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          270 LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             EEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999988888875 47888999999999999998888888999999999999999887765  778899999999998774

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.4e-32  Score=263.72  Aligned_cols=304  Identities=23%  Similarity=0.346  Sum_probs=235.4

Q ss_pred             eecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcC
Q 009136           43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (542)
Q Consensus        43 ~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  122 (542)
                      ++++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN  118 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred             hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence            3788999999999998886 48889999999999999998876 899999999999999998875 58999999999999


Q ss_pred             CCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (542)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (542)
                      +|.+..++. +..+++|++|++++|........+..+++|++|++++|.+..+..  +..+++|++|++++|.+..++. 
T Consensus       119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-  194 (347)
T 4fmz_A          119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-  194 (347)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-
T ss_pred             CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-
Confidence            999998866 889999999999999655555568889999999999998887665  7778888888888888777665 


Q ss_pred             cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEc
Q 009136          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (542)
Q Consensus       203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l  282 (542)
                      +..+++|+.+++.+|.+..++. +..+++|+.|++++|.+..++. +..+++|++|++++|.++                
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~----------------  256 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS----------------  256 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----------------
T ss_pred             ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC----------------
Confidence            6667777777777777665543 6666777777777777666654 566666666666665544                


Q ss_pred             cCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEE
Q 009136          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (542)
Q Consensus       283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (542)
                            .+ ..+..+++|+.+++++|.+..+                                                 
T Consensus       257 ------~~-~~~~~l~~L~~L~l~~n~l~~~-------------------------------------------------  280 (347)
T 4fmz_A          257 ------DI-NAVKDLTKLKMLNVGSNQISDI-------------------------------------------------  280 (347)
T ss_dssp             ------CC-GGGTTCTTCCEEECCSSCCCCC-------------------------------------------------
T ss_pred             ------CC-hhHhcCCCcCEEEccCCccCCC-------------------------------------------------
Confidence                  33 2356667777777777765322                                                 


Q ss_pred             EecCCCCCCCCccccccCCccEEECCCCcccccC-hhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (542)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~  440 (542)
                                 ..+..+++|++|++++|.++..+ ..+..+++|++|++++|.+++.++  +..+++|++|++++|+++
T Consensus       281 -----------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 -----------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -----------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             -----------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                       12344677888888888877644 467888899999999998888766  678899999999988875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.98  E-value=1.2e-30  Score=262.91  Aligned_cols=237  Identities=21%  Similarity=0.305  Sum_probs=147.1

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (542)
                      +.+++++.+++++|..+.               +++++|++++|.+..+ +..|..+++|++|++++|.+..+ |.+|.+
T Consensus        14 ~~v~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~   78 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP---------------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN   78 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CEEEeCCCCcCcCCCCCC---------------CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence            467778888888877653               3578888888877766 35677788888888888777766 557777


Q ss_pred             CCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccCC-cccccCCCccEEE
Q 009136           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD  166 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~  166 (542)
                      +++|++|++++|.++.+|.. |.++++|++|++++|.+..+ +..+..+++|++|++++|.+..++ ..+..+++|++|+
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            77888888877777776543 67777777777777777644 345666777777777777666443 3466666777777


Q ss_pred             ccCCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCcCcc
Q 009136          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSA  244 (542)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~  244 (542)
                      +++|.+..+....+..+++|+.|++++|.+..++. .+..+++|+.|++++|... .++.......+|+.|++++|.+..
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  238 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA  238 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence            77776666666656666666666666666554432 4455555555555554322 233322233344444444444444


Q ss_pred             cch-hccCCCCccEEEcCCC
Q 009136          245 LPA-ELGKLSKLGTLDLHSN  263 (542)
Q Consensus       245 ~~~-~~~~~~~L~~L~l~~~  263 (542)
                      +|. .+..+++|+.|++++|
T Consensus       239 ~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          239 VPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CCHHHHTTCTTCCEEECCSS
T ss_pred             cCHHHhcCccccCeeECCCC
Confidence            331 2333444444444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=7.2e-31  Score=257.32  Aligned_cols=129  Identities=20%  Similarity=0.357  Sum_probs=57.0

Q ss_pred             cCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCC-ccccccCCccEEEc
Q 009136           45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC  121 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l  121 (542)
                      ++++.|+++++.+..+|. .+..+++|++|++++|.+..++. ++..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            445555555555444443 23444555555555554444432 4444455555555544444332 22444444444444


Q ss_pred             CCCcCCcCCcc-ccCCCCCCeEEccCCccccCCc-ccccCCCccEEEccCCccc
Q 009136          122 SSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLT  173 (542)
Q Consensus       122 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~  173 (542)
                      ++|.+..+|.. +..+++|++|++++|.+..++. .+..+++|++|++++|.++
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            44444444432 2344444444444444443321 2333444444444444333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.98  E-value=1.9e-30  Score=261.48  Aligned_cols=315  Identities=20%  Similarity=0.259  Sum_probs=183.9

Q ss_pred             ccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCc
Q 009136          116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (542)
Q Consensus       116 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (542)
                      -+.+++++++++.+|..+.  +++++|++++|.+..++ ..|..+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            3567777777887776553  57888888888887663 45777888888888888887777777777788888888887


Q ss_pred             ccCcccc-ccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchh
Q 009136          195 LLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE  271 (542)
Q Consensus       195 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~  271 (542)
                      .++.+|. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++..
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            7777664 356777777777777777644 44567777777777777777644 34566666677666666655544332


Q ss_pred             hhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhh
Q 009136          272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (542)
Q Consensus       272 ~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (542)
                                           .+..+++|+.|++++|.+..+....+..                               
T Consensus       171 ---------------------~l~~l~~L~~L~l~~n~i~~~~~~~~~~-------------------------------  198 (477)
T 2id5_A          171 ---------------------ALSHLHGLIVLRLRHLNINAIRDYSFKR-------------------------------  198 (477)
T ss_dssp             ---------------------HHTTCTTCCEEEEESCCCCEECTTCSCS-------------------------------
T ss_pred             ---------------------HhcccCCCcEEeCCCCcCcEeChhhccc-------------------------------
Confidence                                 2444555555555555443322111000                               


Q ss_pred             hhcccccccEEEecCCCC-CCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCC
Q 009136          352 ATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSL  429 (542)
Q Consensus       352 ~~~~~~~l~~l~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L  429 (542)
                          ..++++++++++.. ..++.......+|++|++++|.++.+|. .+..+++|++|++++|.+++++...|..+++|
T Consensus       199 ----l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  274 (477)
T 2id5_A          199 ----LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL  274 (477)
T ss_dssp             ----CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC
T ss_pred             ----CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC
Confidence                01122222222111 1122222223355555555555555553 34555555555555555555555555555555


Q ss_pred             cEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcc
Q 009136          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL  509 (542)
Q Consensus       430 ~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l  509 (542)
                      ++|++++|++..+....|..+++|++|++++|.++.+.+..                      +..+++|+.|++++|++
T Consensus       275 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------------~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV----------------------FHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG----------------------BSCGGGCCEEECCSSCE
T ss_pred             CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH----------------------cCCCcccCEEEccCCCc
Confidence            55555555555554444555555555555555554332222                      34456777788888776


Q ss_pred             c
Q 009136          510 Q  510 (542)
Q Consensus       510 ~  510 (542)
                      .
T Consensus       333 ~  333 (477)
T 2id5_A          333 A  333 (477)
T ss_dssp             E
T ss_pred             c
Confidence            6

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=7.1e-31  Score=257.40  Aligned_cols=306  Identities=22%  Similarity=0.271  Sum_probs=214.3

Q ss_pred             CCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEE
Q 009136          135 RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRL  212 (542)
Q Consensus       135 ~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L  212 (542)
                      .+.++++++++++.+..+|.. +..+++|++|++++|.+..+....+..+++|++|++++|.++.++ ..+..+++|+.|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            346778888888877777665 567778888888888777777766777777888888777776654 446777777777


Q ss_pred             EccCCCCccCCCC-CcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCC
Q 009136          213 DLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL  290 (542)
Q Consensus       213 ~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l  290 (542)
                      ++++|.+..++.. +..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++                     
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------  181 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------------------  181 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------------------
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------------------
Confidence            7777777766654 46777777777777777755 334667777777777777666542                     


Q ss_pred             ChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC
Q 009136          291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS  370 (542)
Q Consensus       291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  370 (542)
                         +..+++|+.+++++|.+..+.                                        .+..+++++++++.+.
T Consensus       182 ---~~~l~~L~~L~l~~n~l~~~~----------------------------------------~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          182 ---LSLIPSLFHANVSYNLLSTLA----------------------------------------IPIAVEELDASHNSIN  218 (390)
T ss_dssp             ---GGGCTTCSEEECCSSCCSEEE----------------------------------------CCSSCSEEECCSSCCC
T ss_pred             ---cccccccceeecccccccccC----------------------------------------CCCcceEEECCCCeee
Confidence               223344444444444432211                                        0123344444444444


Q ss_pred             CCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCC
Q 009136          371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI  450 (542)
Q Consensus       371 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~  450 (542)
                      .++...  .++|++|++++|.++..+ ++..+++|++|++++|.++++.+..+..+++|++|++++|++..++.. +..+
T Consensus       219 ~~~~~~--~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l  294 (390)
T 3o6n_A          219 VVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPI  294 (390)
T ss_dssp             EEECCC--CSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECS-SSCC
T ss_pred             eccccc--cccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcc-cCCC
Confidence            333222  467888888888887764 577888888888888888887777788888888888888888876544 5677


Q ss_pred             CCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCC
Q 009136          451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN  530 (542)
Q Consensus       451 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~  530 (542)
                      ++|++|++++|.+..                       +|..+..+++|+.|++++|.++.++  +..+++|+.|++++|
T Consensus       295 ~~L~~L~L~~n~l~~-----------------------~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          295 PTLKVLDLSHNHLLH-----------------------VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             TTCCEEECCSSCCCC-----------------------CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred             CCCCEEECCCCccee-----------------------cCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence            888888888887653                       3344556688999999999888774  678889999999998


Q ss_pred             cCC
Q 009136          531 NIS  533 (542)
Q Consensus       531 ~l~  533 (542)
                      +++
T Consensus       350 ~~~  352 (390)
T 3o6n_A          350 DWD  352 (390)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.2e-29  Score=261.95  Aligned_cols=303  Identities=20%  Similarity=0.261  Sum_probs=152.6

Q ss_pred             CCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEc
Q 009136           68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA  144 (542)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l  144 (542)
                      .+++.++++++.+..+|. .+..+++|++|++++|.++.++ ..|..+++|++|++++|.+..++. .+.++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            344444444444444433 2344444444444444444332 234444444444444444443332 2344444444444


Q ss_pred             cCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCC
Q 009136          145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP  223 (542)
Q Consensus       145 ~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  223 (542)
                      ++|.+..++.. |..+++|++|++++|.+..+.+..+..+++|++|++++|.+..++  +..+++|+.+++++|.+..+ 
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l-  207 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL-  207 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc-
Confidence            44444444333 244444444444444444444444444444444444444444332  22344445555554444322 


Q ss_pred             CCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCC-ChhhcCcCCCcE
Q 009136          224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRK  302 (542)
Q Consensus       224 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~  302 (542)
                         ...++|+.|++++|.+..++..+  .++|+.|++++|.++..+.......|+.|++++|.+.++ |..+..+++|+.
T Consensus       208 ---~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          208 ---AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             ---ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             ---cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence               22334555555555544443322  134555555555444433222233344444444444443 344556666666


Q ss_pred             EEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCc
Q 009136          303 LLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI  382 (542)
Q Consensus       303 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L  382 (542)
                      |++++|.+..                                                           +|..+..+++|
T Consensus       283 L~Ls~N~l~~-----------------------------------------------------------l~~~~~~l~~L  303 (597)
T 3oja_B          283 LYISNNRLVA-----------------------------------------------------------LNLYGQPIPTL  303 (597)
T ss_dssp             EECTTSCCCE-----------------------------------------------------------EECSSSCCTTC
T ss_pred             EECCCCCCCC-----------------------------------------------------------CCcccccCCCC
Confidence            6666665433                                                           22333345677


Q ss_pred             cEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (542)
Q Consensus       383 ~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~  440 (542)
                      ++|++++|.++.+|..+..+++|+.|++++|.+++++   +..+++|+.|++++|++.
T Consensus       304 ~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred             cEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence            7888888777777777777788888888888777765   456777888888887765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.2e-29  Score=262.13  Aligned_cols=305  Identities=22%  Similarity=0.271  Sum_probs=208.8

Q ss_pred             CCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEE
Q 009136          136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD  213 (542)
Q Consensus       136 ~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~  213 (542)
                      +.+++.++++++.+..+|.. +..+++|++|++++|.+..+.+..+..+++|++|++++|.+..++. .+..+++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45677777777777766654 5667777777777777777766667777777777777777766553 456677777777


Q ss_pred             ccCCCCccCCCC-CcCCCCCcEEEcCCCcCcccc-hhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCC
Q 009136          214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (542)
Q Consensus       214 l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~  291 (542)
                      +++|.+..+|.. +..+++|+.|++++|.+..++ ..+..+++|++|++++|.++.++                      
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------  187 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----------------------  187 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------------------
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----------------------
Confidence            777777766554 466777777777777766553 34666677777777776665543                      


Q ss_pred             hhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCC
Q 009136          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (542)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (542)
                        +..+++|+.+++++|.+..++                                        .+..++.++++++.+..
T Consensus       188 --~~~l~~L~~L~l~~n~l~~l~----------------------------------------~~~~L~~L~ls~n~l~~  225 (597)
T 3oja_B          188 --LSLIPSLFHANVSYNLLSTLA----------------------------------------IPIAVEELDASHNSINV  225 (597)
T ss_dssp             --GGGCTTCSEEECCSSCCSEEE----------------------------------------CCTTCSEEECCSSCCCE
T ss_pred             --hhhhhhhhhhhcccCcccccc----------------------------------------CCchhheeeccCCcccc
Confidence              223344444444444432211                                        01233444444444443


Q ss_pred             CCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCC
Q 009136          372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (542)
Q Consensus       372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~  451 (542)
                      ++..+  .++|+.|++++|.++.. .++..+++|++|++++|.++++++..|..+++|++|+|++|.+..++.. +..++
T Consensus       226 ~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~  301 (597)
T 3oja_B          226 VRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-GQPIP  301 (597)
T ss_dssp             EECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-SSCCT
T ss_pred             ccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-cccCC
Confidence            33322  35788888888888775 4577888888888888888888777788888888888888888877544 56678


Q ss_pred             CCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCc
Q 009136          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNN  531 (542)
Q Consensus       452 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~  531 (542)
                      +|+.|++++|.+..                       +|..+..+++|+.|++++|.++.++  +..+++|+.|++++|+
T Consensus       302 ~L~~L~Ls~N~l~~-----------------------i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          302 TLKVLDLSHNHLLH-----------------------VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             TCCEEECCSSCCCC-----------------------CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred             CCcEEECCCCCCCc-----------------------cCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCC
Confidence            88888888887653                       3445566788999999999888774  6788899999999988


Q ss_pred             CC
Q 009136          532 IS  533 (542)
Q Consensus       532 l~  533 (542)
                      ++
T Consensus       357 ~~  358 (597)
T 3oja_B          357 WD  358 (597)
T ss_dssp             EE
T ss_pred             CC
Confidence            75

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=6.3e-31  Score=264.23  Aligned_cols=248  Identities=18%  Similarity=0.221  Sum_probs=181.2

Q ss_pred             HhhceeeccCCcccccchh-hhhccccCCCCCceeeecCCcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCCc
Q 009136            9 RTSGSLNLSNRSLRDVPNE-VYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE   82 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~~   82 (542)
                      .+++.||++++++++.+.. ++..            +++|++|++++|.+.     .++..+..+++|++|++++|.+..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            3578899999988765432 2443            778999999999887     567788889999999999998874


Q ss_pred             c-hH-hhhCCC----CCcEEecCCCccc-----cCCccccccCCccEEEcCCCcCCcC-----Ccc-ccCCCCCCeEEcc
Q 009136           83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-----PSS-LGRCLNLSDFKAS  145 (542)
Q Consensus        83 l-~~-~~~~l~----~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~-----~~~-~~~~~~L~~L~l~  145 (542)
                      . +. ....++    +|++|++++|.++     .++..+..+++|++|++++|.+...     ... ....++|++|+++
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence            3 22 334455    6999999999887     3567788899999999999987632     112 2235679999999


Q ss_pred             CCcccc-----CCcccccCCCccEEEccCCcccccchhhhh-----ccccCcEEEcCCcccCc-----cccccCCCCccc
Q 009136          146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI  210 (542)
Q Consensus       146 ~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~  210 (542)
                      +|.+..     ++..+..+++|++|++++|.+.......+.     ..++|++|++++|.++.     ++..+..+++|+
T Consensus       151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            988774     345567788999999999888765444333     25588888888888765     456667778888


Q ss_pred             EEEccCCCCccC------CCCCcCCCCCcEEEcCCCcCcc-----cchhccCCCCccEEEcCCCcCccc
Q 009136          211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEY  268 (542)
Q Consensus       211 ~L~l~~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~~  268 (542)
                      .|++++|.+...      +..+..+++|+.|++++|.++.     ++..+..+++|++|++++|.++..
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  299 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE  299 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence            888888876632      1223357788888888887774     566677778888888888877643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.4e-29  Score=237.73  Aligned_cols=284  Identities=23%  Similarity=0.333  Sum_probs=183.5

Q ss_pred             CccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCC
Q 009136          115 ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (542)
Q Consensus       115 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  193 (542)
                      +++.++++++.+..+|..+.  +++++|++++|.+..++ ..+..+++|++|++++|.+..+.+..+..+++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            34555555555555544332  45555555555555443 2455566666666666666655555566666666666666


Q ss_pred             cccCccccccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCcc---cchhccCCCCccEEEcCCCcCcccc
Q 009136          194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA---LPAELGKLSKLGTLDLHSNQLKEYC  269 (542)
Q Consensus       194 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~i~~~~  269 (542)
                      |.++.+|..+.  ++|+.|++++|.+..++. .+..+++|+.|++++|.+..   .+..+..+ +|++|++++|.++.++
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence            66666655443  566666666666665543 35666677777777666652   23444444 6677777776666655


Q ss_pred             hhhhcccccEEEccCCCCCCCC-hhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhh
Q 009136          270 VEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL  348 (542)
Q Consensus       270 ~~~~~~~L~~l~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (542)
                      .... ..|+.+++++|.++.++ ..+..+++|+.|++++|.+..+.                                  
T Consensus       189 ~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~----------------------------------  233 (332)
T 2ft3_A          189 KDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE----------------------------------  233 (332)
T ss_dssp             SSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC----------------------------------
T ss_pred             cccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC----------------------------------
Confidence            4332 45666677777666654 34666777777777776553321                                  


Q ss_pred             hhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCC--
Q 009136          349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL--  426 (542)
Q Consensus       349 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l--  426 (542)
                                              +..+..+++|++|++++|.++.+|.++..+++|++|++++|.+++++...|...  
T Consensus       234 ------------------------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~  289 (332)
T 2ft3_A          234 ------------------------NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF  289 (332)
T ss_dssp             ------------------------TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred             ------------------------hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence                                    124556788999999999888888888889999999999999988887766653  


Q ss_pred             ----CCCcEEEccCCCCc--ccCCCccCCCCCCceEecCCCc
Q 009136          427 ----SSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNI  462 (542)
Q Consensus       427 ----~~L~~L~L~~n~i~--~~~~~~~~~~~~L~~L~l~~n~  462 (542)
                          ++|+.|++.+|++.  .+.+.+|..+++|+.+++++|+
T Consensus       290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                67889999999887  5666678888999999988774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.5e-28  Score=235.12  Aligned_cols=280  Identities=21%  Similarity=0.295  Sum_probs=219.9

Q ss_pred             hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhh
Q 009136           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (542)
Q Consensus        10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~   87 (542)
                      +++.++++++.++++|..+.               +++++|++++|.++.++. .|..+++|++|++++|.+..+ |..+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   96 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence            56788888888888887653               468889999888887764 688888999999998888877 6688


Q ss_pred             hCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccc---cCCcccccCCCcc
Q 009136           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (542)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~  163 (542)
                      ..+++|++|++++|.++.+|..+.  ++|++|++++|.+..++. .+.++++|++|++++|.+.   ..+..+..+++|+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            888899999998888888876654  788899998888887654 5778888999999888876   3445678888899


Q ss_pred             EEEccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccCC-CCCcCCCCCcEEEcCCCc
Q 009136          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA  241 (542)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~  241 (542)
                      +|++++|.+..++...+   ++|++|++++|.++.+ +..+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.
T Consensus       175 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          175 YIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             EEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             EEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            99998888887765432   7888889988888766 467888888999999888888654 367888889999999998


Q ss_pred             CcccchhccCCCCccEEEcCCCcCcccchhhhc--------ccccEEEccCCCCCC---CChhhcCcCCCcEEEcCCCc
Q 009136          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNP  309 (542)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~--------~~L~~l~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~  309 (542)
                      +..+|..+..+++|++|++++|.++.++...+.        ..++.+++++|.+..   .+..+..+.+++.+++++|+
T Consensus       252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            888888888888899999988888877655442        337788888887764   34557778888888887763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.2e-28  Score=232.83  Aligned_cols=285  Identities=20%  Similarity=0.287  Sum_probs=167.5

Q ss_pred             CCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccccCCcccccCCCccEEEccCC
Q 009136           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (542)
Q Consensus        92 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~  170 (542)
                      +++.++++++.++.+|..+.  +.++.|++++|+++.++. .+.++++|++|++++|.+.                    
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------------   89 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--------------------   89 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC--------------------
Confidence            45555555555555554332  345555555555554433 3444455555555554444                    


Q ss_pred             cccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCc---ccc
Q 009136          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALP  246 (542)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~---~~~  246 (542)
                         .+.+..+..+++|++|++++|.++.+|..+.  ++|+.|++++|.+..++. .+..+++|+.+++++|.+.   ..+
T Consensus        90 ---~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  164 (330)
T 1xku_A           90 ---KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  164 (330)
T ss_dssp             ---CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             ---eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence               4433334444444444444444444443322  445555555555544332 3445555555555555554   223


Q ss_pred             hhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCC-ChhhcCcCCCcEEEcCCCccccccccccCCCcHHH
Q 009136          247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL  325 (542)
Q Consensus       247 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  325 (542)
                      ..+..+++|++|++++|.++.++.... .+|+.+++++|.++++ +..+..+++|+.|++++|.+..+.           
T Consensus       165 ~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------  232 (330)
T 1xku_A          165 GAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-----------  232 (330)
T ss_dssp             TGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-----------
T ss_pred             hhccCCCCcCEEECCCCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-----------
Confidence            445555666666666665555443332 3466666666666654 345677777777777777654332           


Q ss_pred             HHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccC
Q 009136          326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL  405 (542)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L  405 (542)
                                                                     +..+..+++|++|++++|.++.+|.++..+++|
T Consensus       233 -----------------------------------------------~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  265 (330)
T 1xku_A          233 -----------------------------------------------NGSLANTPHLRELHLNNNKLVKVPGGLADHKYI  265 (330)
T ss_dssp             -----------------------------------------------TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred             -----------------------------------------------hhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence                                                           123445678888888888888888888888888


Q ss_pred             cEEEccCCcCCCCChhhhhC------CCCCcEEEccCCCCcc--cCCCccCCCCCCceEecCCCc
Q 009136          406 QTLILSRNKIKDWPDAILTS------LSSLSCLKLDNNPLRQ--VPSDGFKDIPMLQILDLSYNI  462 (542)
Q Consensus       406 ~~L~l~~~~l~~~~~~~l~~------l~~L~~L~L~~n~i~~--~~~~~~~~~~~L~~L~l~~n~  462 (542)
                      ++|++++|.+++++...|..      .+.|+.|++.+|++..  +.+..|..+++++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            88888888888887776654      3778888888888764  555667778888888888774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.5e-28  Score=235.09  Aligned_cols=279  Identities=27%  Similarity=0.367  Sum_probs=211.3

Q ss_pred             hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhh
Q 009136           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI   87 (542)
Q Consensus        10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~   87 (542)
                      +++.++++++.++++|..++               +++++|++++|.+..++ .+|..+++|++|++++|.+..+ |.++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   98 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS---------------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF   98 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred             cCCEEECCCCCccccCCCCC---------------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence            46778888888888887663               46888888888888664 5788888888888888888876 6678


Q ss_pred             hCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCcccc---CCcccccCCCcc
Q 009136           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS---LPEDLADCSKMS  163 (542)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---l~~~~~~~~~L~  163 (542)
                      ..+++|++|++++|.++.+|..+.  ++|++|++++|++..++. .+..+++|++|++++|.+..   .+..+..+ +|+
T Consensus        99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~  175 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN  175 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred             hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence            888888888888888887776655  788888888888887764 47778888888888887752   34445555 888


Q ss_pred             EEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCc
Q 009136          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA  241 (542)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~  241 (542)
                      +|++++|.++.++....   ++|++|++++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus       176 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence            88888888877665422   67888888888887765 567788888888888888876654 67788888888888888


Q ss_pred             CcccchhccCCCCccEEEcCCCcCcccchhhhc--------ccccEEEccCCCCC--C-CChhhcCcCCCcEEEcCCCc
Q 009136          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLS--G-LPPEIGKMTTLRKLLLTGNP  309 (542)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~--------~~L~~l~l~~~~l~--~-l~~~l~~~~~L~~L~l~~~~  309 (542)
                      +..+|..+..+++|++|++++|.++.++...+.        ..++.+++++|.+.  . .+..+..+++|+.+++++|+
T Consensus       253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888888888888888888876654432        23788888888776  2 34457778888888887763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.1e-30  Score=262.46  Aligned_cols=372  Identities=19%  Similarity=0.197  Sum_probs=220.4

Q ss_pred             CCCcEEecCCCccccC--CccccccCCccEEEcCCCcCC-----cCCccccCCCCCCeEEccCCccccCCcccccCCCcc
Q 009136           91 HMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS  163 (542)
Q Consensus        91 ~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~  163 (542)
                      ++|++|+++++.++..  ...+..+++|++|++++|.+.     .++..+..+++|++|++++|.+              
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--------------   68 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL--------------   68 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC--------------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC--------------
Confidence            3455666665555422  122445555566665555554     2233444445555555555444              


Q ss_pred             EEEccCCcccccchhhh-hccc----cCcEEEcCCcccC-----ccccccCCCCcccEEEccCCCCccC-----CCC-Cc
Q 009136          164 KLDVEGNKLTVLSNNLI-ASWT----MLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRILSI-----PSS-IS  227 (542)
Q Consensus       164 ~L~l~~~~~~~~~~~~~-~~~~----~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~-~~  227 (542)
                               .......+ ..++    +|++|++++|.++     .++..+..+++|+.|++++|.+...     ... ..
T Consensus        69 ---------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  139 (461)
T 1z7x_W           69 ---------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD  139 (461)
T ss_dssp             ---------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             ---------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhc
Confidence                     33222111 1122    3555555555443     2344555556666666666655411     111 12


Q ss_pred             CCCCCcEEEcCCCcCcc-----cchhccCCCCccEEEcCCCcCcccchhhh-------cccccEEEccCCCCCC-----C
Q 009136          228 GCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----L  290 (542)
Q Consensus       228 ~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-------~~~L~~l~l~~~~l~~-----l  290 (542)
                      ..++|++|++++|.+..     ++..+..+++|++|++++|.++.......       ...|+.+++++|.++.     +
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            24467777777776663     34455667777788887777665333222       2257888888887776     4


Q ss_pred             ChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCC
Q 009136          291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS  370 (542)
Q Consensus       291 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  370 (542)
                      +..+..+++|++|++++|.+......                              ..........+.++++++++|.++
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~------------------------------~l~~~~~~~~~~L~~L~L~~n~l~  269 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMA------------------------------ELCPGLLHPSSRLRTLWIWECGIT  269 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHH------------------------------HHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHH------------------------------HHHHHHhcCCCCceEEECcCCCCC
Confidence            55677788899999988876432100                              001111112456788888888776


Q ss_pred             C-----CCccccccCCccEEECCCCccccc-----Chhc-ccCccCcEEEccCCcCCCCC----hhhhhCCCCCcEEEcc
Q 009136          371 A-----IPSEIWEAGEITKLDLSRNSIQEL-----PPEL-SSCASLQTLILSRNKIKDWP----DAILTSLSSLSCLKLD  435 (542)
Q Consensus       371 ~-----~~~~~~~~~~L~~L~l~~~~l~~l-----~~~~-~~~~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~L~  435 (542)
                      .     ++..+..+++|++|++++|.++..     ...+ ...++|++|++++|.+++..    ...+..+++|++|+++
T Consensus       270 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls  349 (461)
T 1z7x_W          270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS  349 (461)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEcc
Confidence            5     566666678888888888887642     2222 23368888888888888754    3345667888888888


Q ss_pred             CCCCcccCCCccC-----CCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136          436 NNPLRQVPSDGFK-----DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       436 ~n~i~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  510 (542)
                      +|++.+.....+.     ..++|++|++++|.++..                  ....++..+..+++|++|++++|+++
T Consensus       350 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~------------------~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS------------------SCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH------------------HHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             CCccccccHHHHHHHHcCCCCceEEEECCCCCCChh------------------hHHHHHHHHHhCCCccEEECCCCCCC
Confidence            8887764333222     267888888888876521                  12245667778899999999999876


Q ss_pred             cc-----Ccccc-CCCCCCEEECCCCcCC
Q 009136          511 SI-----PEGFK-NLTSLTELDLSDNNIS  533 (542)
Q Consensus       511 ~l-----~~~l~-~~~~L~~L~l~~~~l~  533 (542)
                      ..     .+.+. ....|+.|.+.++.+.
T Consensus       412 ~~~~~~l~~~l~~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          412 DAGILQLVESVRQPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHHhccCCcchhheeecccccC
Confidence            32     22232 2457888888887765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=7.3e-26  Score=231.28  Aligned_cols=260  Identities=30%  Similarity=0.365  Sum_probs=231.0

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhh
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~   88 (542)
                      .+++.|++++++++++|..++               ++|++|++++|.++.+|.   .+++|++|++++|.++.+|.   
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred             CCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence            358999999999999998774               479999999999998886   57899999999999998876   


Q ss_pred             CCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  168 (542)
                      .+++|++|++++|.++.+|.   .+++|++|++++|+++.+|..   +++|++|++++|.+..++.   .+++|+.|+++
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~  169 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY  169 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred             CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence            78999999999999999887   678999999999999998864   4899999999999998875   35789999999


Q ss_pred             CCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchh
Q 009136          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (542)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  248 (542)
                      +|.++.++    ..+++|+.|++++|.++.+|..   +++|+.|++.+|.+..++..   +++|+.|++++|.+..+|  
T Consensus       170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--  237 (622)
T 3g06_A          170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--  237 (622)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred             CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence            99999877    4578999999999999988854   47899999999999988753   588999999999999988  


Q ss_pred             ccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccc
Q 009136          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL  313 (542)
Q Consensus       249 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~  313 (542)
                       ..+++|+.|++++|.++.++.  ...+|+.|++++|.++.+|..+..+++|+.|++++|.+...
T Consensus       238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence             456899999999999998877  55679999999999999999999999999999999998643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.7e-25  Score=228.67  Aligned_cols=267  Identities=28%  Similarity=0.332  Sum_probs=140.6

Q ss_pred             CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCc
Q 009136           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  125 (542)
                      ++++|+++++.+..+|..+.  ++|+.|++++|.++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence            45556666655555554443  455555555555555543   34555555555555555544   34555555555555


Q ss_pred             CCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCC
Q 009136          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (542)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  205 (542)
                      ++.+|.   .+++|++|++++|.+..++..                           +++|++|++++|.++.+|.   .
T Consensus       113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---------------------------l~~L~~L~Ls~N~l~~l~~---~  159 (622)
T 3g06_A          113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---------------------------PPGLQELSVSDNQLASLPA---L  159 (622)
T ss_dssp             CCCCCC---CCTTCCEEECCSSCCSCCCCC---------------------------CTTCCEEECCSSCCSCCCC---C
T ss_pred             CCCCCC---CCCCcCEEECCCCCCCcCCCC---------------------------CCCCCEEECcCCcCCCcCC---c
Confidence            554443   334444444444444444332                           2344444444444444432   1


Q ss_pred             CCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCC
Q 009136          206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (542)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~  285 (542)
                      +++|+.|++.+|.+..+|   ..+++|+.|++++|.+..+|..   .++|+.|++++|.++.++..  ..+|+.|++++|
T Consensus       160 ~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N  231 (622)
T 3g06_A          160 PSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN  231 (622)
T ss_dssp             CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS
T ss_pred             cCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCC
Confidence            244555555555555444   2345555555555555544432   24555555555555443321  133555555555


Q ss_pred             CCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEec
Q 009136          286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE  365 (542)
Q Consensus       286 ~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  365 (542)
                      .++.+|   ..+++|+.|++++|.+                                                       
T Consensus       232 ~L~~lp---~~l~~L~~L~Ls~N~L-------------------------------------------------------  253 (622)
T 3g06_A          232 RLTSLP---VLPSELKELMVSGNRL-------------------------------------------------------  253 (622)
T ss_dssp             CCSCCC---CCCTTCCEEECCSSCC-------------------------------------------------------
T ss_pred             ccCcCC---CCCCcCcEEECCCCCC-------------------------------------------------------
Confidence            555544   2334555555555544                                                       


Q ss_pred             CCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCC
Q 009136          366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL  426 (542)
Q Consensus       366 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l  426 (542)
                          +.+|.   .+++|++|++++|.++.+|..+..+++|+.|++++|.+++..+..+..+
T Consensus       254 ----~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          254 ----TSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             ----SCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             ----CcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence                33333   2457777777777777777777777778888888877776655554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=8.4e-28  Score=249.36  Aligned_cols=132  Identities=9%  Similarity=0.029  Sum_probs=58.8

Q ss_pred             CCCCCCeEEccCCccccC-----CcccccCCCccEEEccCCcccccch----hhhhccccCcEEEcCCcccCccccccCC
Q 009136          135 RCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTVLSN----NLIASWTMLTELIASKNLLNGMPETIGS  205 (542)
Q Consensus       135 ~~~~L~~L~l~~~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~  205 (542)
                      .+++|++|++++|.+...     +.....+++|++|+++++.+..+..    ..+..+++|++|++++|.+..++..+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            444555555555543321     1122344555555555554442211    1233445555555555555444444444


Q ss_pred             CCcccEEEccCCCCc----cCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCc
Q 009136          206 LSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (542)
Q Consensus       206 ~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~  266 (542)
                      +++|+.+++......    .....+..+++|+.+.++++....+|..+..+++|++|++++|.++
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCC
Confidence            555555555432111    1223344445555555554444444444444555555555555433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=2.2e-26  Score=217.66  Aligned_cols=241  Identities=26%  Similarity=0.339  Sum_probs=210.8

Q ss_pred             cCCcEEEcCCCccc---chhHhhcCCCCCcEEEcCC-CCCC-cchHhhhCCCCCcEEecCCCccc-cCCccccccCCccE
Q 009136           45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK  118 (542)
Q Consensus        45 ~~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~  118 (542)
                      .++++|+++++.+.   .+|..+..+++|++|++++ +.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57999999999988   5889999999999999995 7776 67889999999999999999998 78888999999999


Q ss_pred             EEcCCCcCC-cCCccccCCCCCCeEEccCCccc-cCCcccccCC-CccEEEccCCcccccchhhhhccccCcEEEcCCcc
Q 009136          119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (542)
Q Consensus       119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  195 (542)
                      |++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+....+..+..+. |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999988 78888999999999999999998 7888888888 999999999999866666688777 9999999999


Q ss_pred             cC-ccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCc-ccchhh
Q 009136          196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA  272 (542)
Q Consensus       196 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~  272 (542)
                      ++ ..|..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++...
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            86 4667788999999999999998866666888999999999999998 77888999999999999999988 445443


Q ss_pred             hcccccEEEccCCC
Q 009136          273 CQLRLSVLDLSNNS  286 (542)
Q Consensus       273 ~~~~L~~l~l~~~~  286 (542)
                      ...+|+.+++++|+
T Consensus       289 ~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          289 NLQRFDVSAYANNK  302 (313)
T ss_dssp             TGGGSCGGGTCSSS
T ss_pred             cccccChHHhcCCC
Confidence            34458888998886

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.9e-25  Score=211.14  Aligned_cols=241  Identities=23%  Similarity=0.265  Sum_probs=175.2

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc---hHhh
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAAI   87 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l---~~~~   87 (542)
                      +.+++++++++++|..++               +++++|++++|.+..+|. .|..+++|++|++++|.+..+   +..+
T Consensus        10 ~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence            568888888888888663               468999999998888875 478889999999999888755   5677


Q ss_pred             hCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc--cccCCCCCCeEEccCCccccC-CcccccCCCccE
Q 009136           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSK  164 (542)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~  164 (542)
                      ..+++|++|++++|.+..+|..+..+++|++|++++|++..++.  .+..+++|++|++++|.+... +..+..+++|++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            78888999999988888888888888888888888888876653  677778888888888877643 344667777777


Q ss_pred             EEccCCcccc-cchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCc
Q 009136          165 LDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA  241 (542)
Q Consensus       165 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~  241 (542)
                      |++++|.+.. ..+..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus       155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            7777777764 3344466677777777777777655 4556666777777777776665543 45666677777777776


Q ss_pred             Cccc-chhccCCC-CccEEEcCCCcCcc
Q 009136          242 LSAL-PAELGKLS-KLGTLDLHSNQLKE  267 (542)
Q Consensus       242 ~~~~-~~~~~~~~-~L~~L~l~~~~i~~  267 (542)
                      +... +..+..++ +|++|++++|.+..
T Consensus       235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          235 IMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CcccCHHHHHhhhccCCEEEccCCCeec
Confidence            6643 44455553 66666666666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=5.8e-26  Score=214.71  Aligned_cols=240  Identities=22%  Similarity=0.322  Sum_probs=203.2

Q ss_pred             CCCcEEEcCCCCCC---cchHhhhCCCCCcEEecCC-Cccc-cCCccccccCCccEEEcCCCcCC-cCCccccCCCCCCe
Q 009136           68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD  141 (542)
Q Consensus        68 ~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~  141 (542)
                      .+++.|+++++.+.   .+|..+..+++|++|++++ |.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57899999999988   4788999999999999995 7776 67888999999999999999988 78888999999999


Q ss_pred             EEccCCccc-cCCcccccCCCccEEEccCCcccccchhhhhccc-cCcEEEcCCcccC-ccccccCCCCcccEEEccCCC
Q 009136          142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR  218 (542)
Q Consensus       142 L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~  218 (542)
                      |++++|.+. .++..+..+++|++|++++|.+....+..+..++ +|++|++++|.+. .+|..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999988 6788899999999999999999855555577777 8999999999987 6777787776 9999999998


Q ss_pred             Cc-cCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCc-ccchhhhc-ccccEEEccCCCCCC-CChhh
Q 009136          219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK-EYCVEACQ-LRLSVLDLSNNSLSG-LPPEI  294 (542)
Q Consensus       219 ~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~-~~L~~l~l~~~~l~~-l~~~l  294 (542)
                      +. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .++..... ..|+.+++++|.+++ +|. .
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-C
Confidence            88 4566788899999999999999866666888899999999999988 44444433 349999999998885 555 4


Q ss_pred             cCcCCCcEEEcCCCc
Q 009136          295 GKMTTLRKLLLTGNP  309 (542)
Q Consensus       295 ~~~~~L~~L~l~~~~  309 (542)
                      ..+++|+.+++++|+
T Consensus       288 ~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccccccChHHhcCCC
Confidence            788899999999987

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.1e-25  Score=217.26  Aligned_cols=265  Identities=20%  Similarity=0.264  Sum_probs=147.8

Q ss_pred             eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhhhCC
Q 009136           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGEL   90 (542)
Q Consensus        13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~l   90 (542)
                      ..+++++.++++|..++               ++|++|++++|.+..++. .+..+++|++|++++|.+..+ +.++..+
T Consensus        35 ~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL   99 (353)
T ss_dssp             EEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             EeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence            45666666666665543               246666666666665543 566666666666666666655 3356666


Q ss_pred             CCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcCCc--cccCCCCCCeEEccCC-ccccC-CcccccCCCccEE
Q 009136           91 HMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSKMSKL  165 (542)
Q Consensus        91 ~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~l-~~~~~~~~~L~~L  165 (542)
                      ++|++|++++|.++.++.. +..+++|++|++++|++..++.  .+..+++|++|++++| .+..+ +..+..+++|++|
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            6666666666666655544 5566666666666666665554  4555666666666665 24433 2345555666666


Q ss_pred             EccCCcccccchhhhhccccCcEEEcCCcccCcccccc-CCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCc
Q 009136          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~  243 (542)
                      ++++|.+..+.+..+..+++|++|++++|.++.++..+ ..+++|+.|++++|.+..++. .+.                
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----------------  243 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS----------------  243 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc----------------
Confidence            66666655554445555555666666655555544322 234555555555555543321 000                


Q ss_pred             ccchhccCCCCccEEEcCCCcCcc-----cchhhhc-ccccEEEccCCCCCCCChh-hcCcCCCcEEEcCCCcccc
Q 009136          244 ALPAELGKLSKLGTLDLHSNQLKE-----YCVEACQ-LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRT  312 (542)
Q Consensus       244 ~~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~-~~L~~l~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~~~~  312 (542)
                          .....+.++.++++++.+..     ++..... .+|+.+++++|.++.+|.. +..+++|+++++++|++..
T Consensus       244 ----~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          244 ----TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             -------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ----cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence                01123344444444444432     1211111 2366666666666667666 4778888899998887653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.7e-25  Score=212.70  Aligned_cols=223  Identities=21%  Similarity=0.273  Sum_probs=184.8

Q ss_pred             cCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCC
Q 009136           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  124 (542)
                      +++++|+++++.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            57888888888888888777788888888888888888888888888888888888888888888888888888888886


Q ss_pred             cC-CcCCcccc---------CCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCc
Q 009136          125 QL-KELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (542)
Q Consensus       125 ~~-~~~~~~~~---------~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (542)
                      ++ ..+|..+.         .+++|++|++++|.+..+|..+..+++|++|++++|.+..+... +..+++|++|++++|
T Consensus       161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC  239 (328)
T ss_dssp             TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTC
T ss_pred             CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCC
Confidence            54 35665554         38889999999998888888888889999999999988877664 888889999999987


Q ss_pred             cc-CccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCccc
Q 009136          195 LL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY  268 (542)
Q Consensus       195 ~~-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~~  268 (542)
                      .+ +.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++++.+++..+.+...
T Consensus       240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence            65 567788889999999999997655 67888899999999999998766 7899999999999999988765543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.4e-25  Score=211.65  Aligned_cols=222  Identities=22%  Similarity=0.303  Sum_probs=169.3

Q ss_pred             CCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEcc
Q 009136           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS  145 (542)
Q Consensus        66 ~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  145 (542)
                      ..++++.|+++++.+..+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            35778888888888888887777788888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcc-ccCCcccc---------cCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEcc
Q 009136          146 NNCI-TSLPEDLA---------DCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH  215 (542)
Q Consensus       146 ~~~~-~~l~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  215 (542)
                      +|.+ ..+|..+.         .+++|++|++++|.++.++.. +..+++|++|++++|.+..+|..+..+++|+.|+++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            8644 35555544         378888888888888766554 778888888888888888888778888888888888


Q ss_pred             CCCCc-cCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCc-ccchhhhccc-ccEEEccCCCCC
Q 009136          216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLS  288 (542)
Q Consensus       216 ~~~~~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~-L~~l~l~~~~l~  288 (542)
                      +|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|....... ++.+++..+.+.
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            87655 56677788888888888887655 66777888888888888887544 4555444433 777777655433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=3.4e-25  Score=213.79  Aligned_cols=172  Identities=23%  Similarity=0.311  Sum_probs=89.3

Q ss_pred             EecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCccc
Q 009136           96 LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLT  173 (542)
Q Consensus        96 L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~  173 (542)
                      .+.+++.++.+|..+.  ++|++|++++|++..++. .+.++++|++|++++|.+..++ ..+..+++|++|++++|.++
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  113 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS  113 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence            3444444444443322  244444444444443332 3444444444444444444332 23455555555555555555


Q ss_pred             ccchhhhhccccCcEEEcCCcccCcccc--ccCCCCcccEEEccCC-CCccC-CCCCcCCCCCcEEEcCCCcCccc-chh
Q 009136          174 VLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQN-RILSI-PSSISGCCSLAEFYMGNNALSAL-PAE  248 (542)
Q Consensus       174 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~  248 (542)
                      .+....+..+++|++|++++|.++.+|.  .+..+++|+.|++++| .+..+ +..+..+++|++|++++|.+..+ |..
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS  193 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence            5555555555555666665555555554  4555666666666665 24433 33455666666666666666543 455


Q ss_pred             ccCCCCccEEEcCCCcCcccc
Q 009136          249 LGKLSKLGTLDLHSNQLKEYC  269 (542)
Q Consensus       249 ~~~~~~L~~L~l~~~~i~~~~  269 (542)
                      +..+++|++|++++|.++.++
T Consensus       194 l~~l~~L~~L~l~~n~l~~~~  214 (353)
T 2z80_A          194 LKSIQNVSHLILHMKQHILLL  214 (353)
T ss_dssp             TTTCSEEEEEEEECSCSTTHH
T ss_pred             HhccccCCeecCCCCccccch
Confidence            666666666666666554433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=8.8e-26  Score=234.17  Aligned_cols=428  Identities=14%  Similarity=0.071  Sum_probs=292.4

Q ss_pred             hHHHHHHHhhceeeccCCcc----cccchhhhhccccCCCCCceeeecCCcEEEcCCCcccc-hhHhhcC-CCC-CcEEE
Q 009136            2 DRILKAARTSGSLNLSNRSL----RDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKEDLRN-LPL-LTVLN   74 (542)
Q Consensus         2 ~~~~~~~~~l~~l~l~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~l~~-~~~-L~~L~   74 (542)
                      .+++++..+++.|+++++.-    ..+|..... +....-..-...+++|++|++++|.+.. .+..+.. ++. |++|+
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGG-YVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCC-BCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccc-cchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            35678888999999988532    122211100 0000000000127889999999998762 3344443 444 99999


Q ss_pred             cCCCCC-C--cchHhhhCCCCCcEEecCCCccccC-----CccccccCCccEEEcCCCcCC-----cCCccccCCCCCCe
Q 009136           75 VSHNKL-S--ELPAAIGELHMLKSLDVSFNSIMKI-----PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSD  141 (542)
Q Consensus        75 l~~~~~-~--~l~~~~~~l~~L~~L~l~~~~~~~l-----~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~  141 (542)
                      +++|.- .  .++.....+++|++|++++|.++..     +.....+++|++|+++++.+.     .++..+.++++|++
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            999862 2  2344556899999999999987633     234567899999999999886     33445668899999


Q ss_pred             EEccCCccccCCcccccCCCccEEEccCCccc---ccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCC
Q 009136          142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLT---VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (542)
Q Consensus       142 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  218 (542)
                      |++++|.+..++..+..+++|++|+++.....   ......+..+++|+.+.+.+.....+|..+..+++|++|++++|.
T Consensus       225 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             EECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             EeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            99999999888888899999999999753222   111223667789999999988777888888889999999999998


Q ss_pred             Ccc--CCCCCcCCCCCcEEEcCCCcCc--ccchhccCCCCccEEEcCC-----------CcCcccchh---hhcccccEE
Q 009136          219 ILS--IPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHS-----------NQLKEYCVE---ACQLRLSVL  280 (542)
Q Consensus       219 ~~~--~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~-----------~~i~~~~~~---~~~~~L~~l  280 (542)
                      +..  +...+..+++|+.|++++ .+.  .++.....+++|++|++++           +.++.....   ....+|+.+
T Consensus       305 l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L  383 (592)
T 3ogk_B          305 LETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM  383 (592)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred             CCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence            652  223467899999999984 333  3344456788999999993           455532221   224569999


Q ss_pred             EccCCCCCCC-Chhhc-CcCCCcEEEcCC----CccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhc
Q 009136          281 DLSNNSLSGL-PPEIG-KMTTLRKLLLTG----NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR  354 (542)
Q Consensus       281 ~l~~~~l~~l-~~~l~-~~~~L~~L~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (542)
                      +++.+.+++- +..+. .+++|+.|++.+    +.++..+.                              +........
T Consensus       384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~------------------------------~~~~~~~~~  433 (592)
T 3ogk_B          384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL------------------------------DNGVRSLLI  433 (592)
T ss_dssp             EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC------------------------------HHHHHHHHH
T ss_pred             EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH------------------------------HHHHHHHHH
Confidence            9988877652 22344 488999999963    33332110                              001111223


Q ss_pred             ccccccEEEecCCC--CC-CCCcccc-ccCCccEEECCCCcccc--cChhcccCccCcEEEccCCcCCCCC-hhhhhCCC
Q 009136          355 LSVTSKELSLEGMN--LS-AIPSEIW-EAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWP-DAILTSLS  427 (542)
Q Consensus       355 ~~~~l~~l~l~~~~--~~-~~~~~~~-~~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~l~  427 (542)
                      ..+++++++++.|.  ++ .....+. .+++|++|++++|.+++  ++..+.++++|++|++++|.+++.. ......++
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  513 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP  513 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence            35678999997643  33 2222333 37899999999999875  5556688999999999999987543 33346799


Q ss_pred             CCcEEEccCCCCcccCCCcc-CCCCCCceEecCCC
Q 009136          428 SLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN  461 (542)
Q Consensus       428 ~L~~L~L~~n~i~~~~~~~~-~~~~~L~~L~l~~n  461 (542)
                      +|++|++++|+++......+ ..++.+....+..+
T Consensus       514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            99999999999887655444 35777777666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=2e-24  Score=201.87  Aligned_cols=218  Identities=28%  Similarity=0.386  Sum_probs=121.0

Q ss_pred             eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcc-hHhhhCC
Q 009136           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGEL   90 (542)
Q Consensus        13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l   90 (542)
                      .+++++.+++++|..+               .++|++|+++++.+..++ ..|..+++|++|++++|.+..+ +.++..+
T Consensus        15 ~~~c~~~~l~~ip~~~---------------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   79 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI---------------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL   79 (285)
T ss_dssp             EEECCSSCCSSCCTTC---------------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             EEEcCcCCcccCCcCC---------------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence            4555555555555543               224555555555555443 3455555555555555555544 3355555


Q ss_pred             CCCcEEecCCCc-cccC-CccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136           91 HMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (542)
Q Consensus        91 ~~L~~L~l~~~~-~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  168 (542)
                      ++|++|++++|. +..+ +..+..+++|++|++++|.+..++                      +..+..+++|++|+++
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC----------------------TTTTTTCTTCCEEECC
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC----------------------HhHhhCCcCCCEEECC
Confidence            555555555554 4444 334455555555555555544332                      2234444555555555


Q ss_pred             CCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCcccc
Q 009136          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP  246 (542)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~  246 (542)
                      +|.+..+....+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..++
T Consensus       138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            555554444445555555555555555554443 355566666666666666544 556666777777777777777665


Q ss_pred             h-hccCCCCccEEEcCCCcCcc
Q 009136          247 A-ELGKLSKLGTLDLHSNQLKE  267 (542)
Q Consensus       247 ~-~~~~~~~L~~L~l~~~~i~~  267 (542)
                      . .+..+++|+.|++++|.+..
T Consensus       218 ~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          218 TEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             HHHHTTCTTCCEEECCSSCEEC
T ss_pred             HHHcccCcccCEEeccCCCccC
Confidence            3 46677777777777776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.4e-24  Score=205.26  Aligned_cols=243  Identities=21%  Similarity=0.248  Sum_probs=186.5

Q ss_pred             CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccC---CccccccCCccEEEcC
Q 009136           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCS  122 (542)
Q Consensus        47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~  122 (542)
                      -+.++++++.++.+|..+.  ++|++|+++++.++.+|. .+..+++|++|++++|.++.+   +..+..+++|++|+++
T Consensus         9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            3678999999998887654  689999999999998876 478999999999999988754   5667778999999999


Q ss_pred             CCcCCcCCccccCCCCCCeEEccCCccccCCc--ccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCc--
Q 009136          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--  198 (542)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--  198 (542)
                      +|.+..++..+..+++|++|++++|.+..++.  .+..+++|++|++++|.+.......+..+++|++|++++|.+..  
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            99988888888889999999999998887764  57888889999988888887777777788888888888887764  


Q ss_pred             cccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCcccch-hccCCCCccEEEcCCCcCcccchhhhccc
Q 009136          199 MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLR  276 (542)
Q Consensus       199 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  276 (542)
                      +|..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|++|++++|.++...       
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------  239 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-------  239 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-------
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-------
Confidence            667777777788888887777755 4566777777777777777776543 4566667777776666655432       


Q ss_pred             ccEEEccCCCCCCCChhhcCc-CCCcEEEcCCCcccc
Q 009136          277 LSVLDLSNNSLSGLPPEIGKM-TTLRKLLLTGNPLRT  312 (542)
Q Consensus       277 L~~l~l~~~~l~~l~~~l~~~-~~L~~L~l~~~~~~~  312 (542)
                                    +..+..+ ++|+.+++++|.+..
T Consensus       240 --------------~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          240 --------------KQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             --------------SSSCCCCCTTCCEEECTTCCEEC
T ss_pred             --------------HHHHHhhhccCCEEEccCCCeec
Confidence                          2334455 367777777777643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=5.8e-25  Score=205.47  Aligned_cols=200  Identities=23%  Similarity=0.340  Sum_probs=165.1

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCC-CCcc-hH
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PA   85 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~-~~~l-~~   85 (542)
                      ++++.|+++++.+++++...+..            +++|++|++++|.+..+ +..+..+++|++|++++|. +..+ +.
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRA------------CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTT------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCceEEEeeCCcCCccCHHHccc------------CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence            47899999999999998876665            78899999999999977 6789999999999999997 8877 66


Q ss_pred             hhhCCCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccccCCcc-cccCCCc
Q 009136           86 AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKM  162 (542)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L  162 (542)
                      .+..+++|++|++++|.++.+ +..+..+++|++|++++|++..++. .+..+++|++|++++|.+..++.. +..+++|
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence            899999999999999999977 5668899999999999999997764 477888899999998888877654 7778888


Q ss_pred             cEEEccCCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEEccCCCCc
Q 009136          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL  220 (542)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  220 (542)
                      ++|++++|.+..+.+..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            888888888877766667777777777777777766553 3566666666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=9.7e-24  Score=209.84  Aligned_cols=238  Identities=24%  Similarity=0.361  Sum_probs=136.9

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcch-HhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~-~~~~~   89 (542)
                      +.+++++.+++++|..+.               ++++.|++++|.+..++ ..|.++++|++|++++|.+..++ .+|..
T Consensus        46 ~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~  110 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIS---------------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG  110 (440)
T ss_dssp             CEEECCSCCCSSCCSCCC---------------TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT
T ss_pred             CEEEeCCCCcCcCCCCCC---------------CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC
Confidence            456666666666666553               24666666666666543 45666666666666666666553 35666


Q ss_pred             CCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCC-ccccCCc-ccccCCCccEE
Q 009136           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL  165 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L  165 (542)
                      +++|++|++++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|++|
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  190 (440)
T 3zyj_A          111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL  190 (440)
T ss_dssp             CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred             CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence            6666666666666665544 35666666666666666665443 4555666666666653 3333333 35555666666


Q ss_pred             EccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCc
Q 009136          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~  243 (542)
                      ++++|.++.++.  +..+++|++|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.
T Consensus       191 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          191 NLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             ECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred             cCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence            666666655542  55555666666666655544 34555556666666666655543 334555566666666666555


Q ss_pred             ccch-hccCCCCccEEEcCCCcCc
Q 009136          244 ALPA-ELGKLSKLGTLDLHSNQLK  266 (542)
Q Consensus       244 ~~~~-~~~~~~~L~~L~l~~~~i~  266 (542)
                      .++. .+..+++|+.|++++|.+.
T Consensus       269 ~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          269 LLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccChhHhccccCCCEEEcCCCCcc
Confidence            5433 2445555666666555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.5e-24  Score=205.67  Aligned_cols=236  Identities=22%  Similarity=0.283  Sum_probs=178.1

Q ss_pred             hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchHhhhC
Q 009136           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (542)
Q Consensus        11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~   89 (542)
                      ++..+++.+.+.+.+..++..            +++|++|++++|.+..++ ..+..+++|++|++++|.+..++. +..
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~   78 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LES   78 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETT
T ss_pred             eeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhh
Confidence            455667777777666666665            667888888888888654 678888888888888888876644 788


Q ss_pred             CCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCc-ccccCCCccEEEcc
Q 009136           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVE  168 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~  168 (542)
                      +++|++|++++|.++.++.    .++|++|++++|++..++..  .+++|++|++++|.+..++. .+..+++|++|+++
T Consensus        79 l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A           79 LSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             CTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred             cCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence            8888888888888776542    37888888888888766432  35778888888888876643 56777888888888


Q ss_pred             CCcccccchhhh-hccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccch
Q 009136          169 GNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA  247 (542)
Q Consensus       169 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  247 (542)
                      +|.+..+....+ ..+++|++|++++|.++.++.. ..+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|.
T Consensus       153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             CCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence            888877665544 4677888888888888776543 34777888888888887777777777888888888888887777


Q ss_pred             hccCCCCccEEEcCCCcCc
Q 009136          248 ELGKLSKLGTLDLHSNQLK  266 (542)
Q Consensus       248 ~~~~~~~L~~L~l~~~~i~  266 (542)
                      .+..+++|+.|++++|.+.
T Consensus       232 ~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCB
T ss_pred             HhhcCCCCCEEEccCCCcc
Confidence            7777778888888877766

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.2e-23  Score=210.07  Aligned_cols=238  Identities=24%  Similarity=0.343  Sum_probs=143.3

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcch-HhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-AAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~   89 (542)
                      +.+++++.+++++|..+.               +++++|++++|.+..+ ++.|.++++|+.|++++|.+..++ ..|..
T Consensus        57 ~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  121 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG  121 (452)
T ss_dssp             CEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence            456666666666665542               3466666666666654 355666666666666666666553 45666


Q ss_pred             CCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCC-ccccCCc-ccccCCCccEE
Q 009136           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL  165 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~-~~~~~~~L~~L  165 (542)
                      +++|++|++++|.++.++.. +..+++|++|++++|.+..++. .+.++++|++|+++++ .+..++. .+..+++|++|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            66666666666666655443 5666666666666666665543 4556666666666663 3444433 35556666666


Q ss_pred             EccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCc
Q 009136          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~  243 (542)
                      ++++|.+..++.  +..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.
T Consensus       202 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          202 NLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             ECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            666666665532  55566666666666666554 44556666666666666666543 344556666666666666666


Q ss_pred             ccch-hccCCCCccEEEcCCCcCc
Q 009136          244 ALPA-ELGKLSKLGTLDLHSNQLK  266 (542)
Q Consensus       244 ~~~~-~~~~~~~L~~L~l~~~~i~  266 (542)
                      .++. .+..+++|+.|++++|.+.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ccChHHhccccCCCEEEccCCCcC
Confidence            5543 3455566666666666544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=3.1e-25  Score=209.87  Aligned_cols=245  Identities=16%  Similarity=0.151  Sum_probs=144.0

Q ss_pred             ceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCC--cchHhhh-------CCCCCcEEecCCCccc-cCCcc
Q 009136           40 KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG-------ELHMLKSLDVSFNSIM-KIPDE  109 (542)
Q Consensus        40 ~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~-~l~~~  109 (542)
                      .++..++|++|++++|.+ .+|..+...  |+.|+++++.+.  .++..+.       .+++|++|++++|.++ .+|..
T Consensus        38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            344456666666666666 555544433  666666666554  2333333       5666666666666665 45554


Q ss_pred             c--cccCCccEEEcCCCcCCcCCccccCC-----CCCCeEEccCCccccCC-cccccCCCccEEEccCCccccc----ch
Q 009136          110 I--GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVL----SN  177 (542)
Q Consensus       110 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~----~~  177 (542)
                      +  ..+++|++|++++|++..+|..+..+     ++|++|++++|.+..++ ..+..+++|++|++++|++...    ..
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            4  56666666666666666555545444     66666666666666554 4566666666666666664321    11


Q ss_pred             hhhhccccCcEEEcCCcccCccc----cccCCCCcccEEEccCCCCccCC--CCCcCCCCCcEEEcCCCcCcccchhccC
Q 009136          178 NLIASWTMLTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSALPAELGK  251 (542)
Q Consensus       178 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~  251 (542)
                      ..+..+++|++|++++|.++.++    ..+..+++|+.|++++|.+...+  ..+..+++|+.|++++|.++.+|..+. 
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-  273 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-  273 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred             HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence            11256666666666666665332    12345566667777766666533  334456667777777776666666554 


Q ss_pred             CCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCC
Q 009136          252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG  289 (542)
Q Consensus       252 ~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~  289 (542)
                       ++|++|++++|+++.++......+|+.+++++|.+++
T Consensus       274 -~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             -CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence             6677777777766666543333446777777776554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=3.6e-23  Score=205.74  Aligned_cols=122  Identities=24%  Similarity=0.326  Sum_probs=63.4

Q ss_pred             ccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCc
Q 009136          116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (542)
Q Consensus       116 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (542)
                      ...+++++..+..+|..+.  ++++.|++++|.+..++ ..|..+++|++|++++|.+..+....|.++++|++|++++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4556666666666665443  45666666666665443 34555666666666666665555555555555555555555


Q ss_pred             ccCcccc-ccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCC
Q 009136          195 LLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGN  239 (542)
Q Consensus       195 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~  239 (542)
                      .++.++. .+..+++|+.|++++|.+..++. .+..+++|+.|++++
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            5544442 34444444444444444443322 333334444444433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=2.1e-26  Score=239.01  Aligned_cols=384  Identities=14%  Similarity=0.133  Sum_probs=234.0

Q ss_pred             ecCCcEEEcCCCccc-c---------------hhHhhcCCCCCcEEEcCCCCCCcc-hHhhh-CCCCCcEEecCCC-ccc
Q 009136           44 AVDLQKLILAHNNIE-K---------------LKEDLRNLPLLTVLNVSHNKLSEL-PAAIG-ELHMLKSLDVSFN-SIM  104 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~-~---------------l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~-~l~~L~~L~l~~~-~~~  104 (542)
                      +++|++|+++++... .               ++.....+++|++|++++|.+... +..+. .+++|++|++++| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            566777777776421 1               122345677788888887776632 33443 5778888888777 444


Q ss_pred             c--CCccccccCCccEEEcCCCcCCc-----CCccccCCCCCCeEEccCCc--cc--cCCcccccCCCccEEEccCC-cc
Q 009136          105 K--IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNC--IT--SLPEDLADCSKMSKLDVEGN-KL  172 (542)
Q Consensus       105 ~--l~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~--~l~~~~~~~~~L~~L~l~~~-~~  172 (542)
                      .  ++..+.++++|++|++++|.+..     ++.....+++|++|+++++.  +.  .+......+++|++|++++| .+
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            2  44445567788888887777553     22233466778888887775  21  12222345678888888777 33


Q ss_pred             cccchhhhhccccCcEEEcCCc-------ccCccccccCCCCcccEE-EccCCCCccCCCCCcCCCCCcEEEcCCCcCcc
Q 009136          173 TVLSNNLIASWTMLTELIASKN-------LLNGMPETIGSLSRLIRL-DLHQNRILSIPSSISGCCSLAEFYMGNNALSA  244 (542)
Q Consensus       173 ~~~~~~~~~~~~~L~~L~l~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  244 (542)
                      .. ....+..+++|++|.+..+       .+..++..+.++++|+.+ .+.+.....++..+..+++|+.|++++|.+..
T Consensus       225 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~  303 (594)
T 2p1m_B          225 EK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS  303 (594)
T ss_dssp             HH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred             HH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence            33 2334667777888875444       333455566777777777 44443333444445567788888888887652


Q ss_pred             --cchhccCCCCccEEEcCCCcCccc--chhh-hcccccEEEccC---------CCCCC--CChhhcCcCCCcEEEcCCC
Q 009136          245 --LPAELGKLSKLGTLDLHSNQLKEY--CVEA-CQLRLSVLDLSN---------NSLSG--LPPEIGKMTTLRKLLLTGN  308 (542)
Q Consensus       245 --~~~~~~~~~~L~~L~l~~~~i~~~--~~~~-~~~~L~~l~l~~---------~~l~~--l~~~l~~~~~L~~L~l~~~  308 (542)
                        +...+..+++|++|++++| +...  .... ...+|++|++++         +.+++  +......+++|+.|.+..+
T Consensus       304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~  382 (594)
T 2p1m_B          304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR  382 (594)
T ss_dssp             HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred             HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence              3333567788888888877 3321  1111 134588887743         23322  1111234788888877666


Q ss_pred             ccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEec--C----CCCCCCCc------cc
Q 009136          309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE--G----MNLSAIPS------EI  376 (542)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~----~~~~~~~~------~~  376 (542)
                      .++...                                  ........++++++++.  +    +.++..|.      .+
T Consensus       383 ~l~~~~----------------------------------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~  428 (594)
T 2p1m_B          383 QMTNAA----------------------------------LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV  428 (594)
T ss_dssp             CCCHHH----------------------------------HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred             CcCHHH----------------------------------HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence            553211                                  11111224567888887  3    34443322      24


Q ss_pred             cccCCccEEECCCCcccc-cChhcc-cCccCcEEEccCCcCCCCChhhh-hCCCCCcEEEccCCCCcccCCC-ccCCCCC
Q 009136          377 WEAGEITKLDLSRNSIQE-LPPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSD-GFKDIPM  452 (542)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~-l~~~~~-~~~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~-~~~~~~~  452 (542)
                      ..+++|++|++++ .+++ ....+. .+++|++|++++|.+++.....+ .++++|++|++++|++++.... ....+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            5578999999977 5443 222333 48899999999999877655555 6689999999999998653322 2345789


Q ss_pred             CceEecCCCcCC
Q 009136          453 LQILDLSYNIAS  464 (542)
Q Consensus       453 L~~L~l~~n~~~  464 (542)
                      |++|++++|.++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            999999999773

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.6e-25  Score=232.37  Aligned_cols=215  Identities=20%  Similarity=0.221  Sum_probs=98.3

Q ss_pred             ecCCcEEEcCCCcccc-hhHhhc-CCCCCcEEEcCCC-CCCc--chHhhhCCCCCcEEecCCCcccc-----CCcccccc
Q 009136           44 AVDLQKLILAHNNIEK-LKEDLR-NLPLLTVLNVSHN-KLSE--LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSA  113 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~-l~~~l~-~~~~L~~L~l~~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~-----l~~~~~~l  113 (542)
                      +++|++|++++|.+.. .+..+. .+++|++|++++| .+..  ++..+..+++|++|++++|.++.     ++.....+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            4456666666555441 222232 4556666666555 3332  33334455566666666555442     11122244


Q ss_pred             CCccEEEcCCCc--CC--cCCccccCCCCCCeEEccCC-ccccCCcccccCCCccEEEccCCc-------ccccchhhhh
Q 009136          114 TALVKFDCSSNQ--LK--ELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMSKLDVEGNK-------LTVLSNNLIA  181 (542)
Q Consensus       114 ~~L~~L~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~  181 (542)
                      ++|++|++++|.  +.  .++..+..+++|++|++++| .+..++..+..+++|++|++..+.       +..+.. .+.
T Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~  262 (594)
T 2p1m_B          184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALS  262 (594)
T ss_dssp             CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHH
T ss_pred             CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HHh
Confidence            556666665554  11  11112233455666666555 333344445555566666543332       112221 245


Q ss_pred             ccccCcEE-EcCCcccCccccccCCCCcccEEEccCCCCcc--CCCCCcCCCCCcEEEcCCCcCc--ccchhccCCCCcc
Q 009136          182 SWTMLTEL-IASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLG  256 (542)
Q Consensus       182 ~~~~L~~L-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~  256 (542)
                      ++++|+.+ .+.+.....++..+..+++|+.|++++|.+..  +...+..+++|+.|++++| +.  .++.....+++|+
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~  341 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR  341 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence            55555555 33333333344333345556666665555431  1122345555666666555 22  1122222355566


Q ss_pred             EEEc
Q 009136          257 TLDL  260 (542)
Q Consensus       257 ~L~l  260 (542)
                      +|++
T Consensus       342 ~L~L  345 (594)
T 2p1m_B          342 ELRV  345 (594)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=5.5e-23  Score=205.16  Aligned_cols=224  Identities=22%  Similarity=0.313  Sum_probs=122.2

Q ss_pred             CCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEc
Q 009136          160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYM  237 (542)
Q Consensus       160 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l  237 (542)
                      +++++|++++|.+..+....|..+++|++|++++|.+..++ ..+..+++|+.|++++|.+..++. .+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            34444444444444444444444445555555554444433 344455555555555555554433 3455556666666


Q ss_pred             CCCcCcccch-hccCCCCccEEEcCCC-cCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccc
Q 009136          238 GNNALSALPA-ELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS  315 (542)
Q Consensus       238 ~~~~~~~~~~-~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~  315 (542)
                      ++|.+..++. .+..+++|+.|++++| .+..++.                     ..+..+++|+.|++++|.+..++ 
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---------------------~~~~~l~~L~~L~L~~n~l~~~~-  212 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE---------------------GAFEGLFNLKYLNLGMCNIKDMP-  212 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT---------------------TTTTTCTTCCEEECTTSCCSSCC-
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh---------------------hhccCCCCCCEEECCCCcccccc-
Confidence            6666555433 4555666666666553 2222211                     12444555555555555442221 


Q ss_pred             cccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCccccc
Q 009136          316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL  395 (542)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  395 (542)
                                                                                 .+..+++|++|++++|.++.+
T Consensus       213 -----------------------------------------------------------~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          213 -----------------------------------------------------------NLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             -----------------------------------------------------------CCTTCTTCCEEECTTSCCSEE
T ss_pred             -----------------------------------------------------------cccccccccEEECcCCcCccc
Confidence                                                                       122345666666666666554


Q ss_pred             -ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCC
Q 009136          396 -PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (542)
Q Consensus       396 -~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  464 (542)
                       |..|.++++|++|++++|.++++....|..+++|++|+|++|+++.++...|..+++|+.|++++|.+.
T Consensus       234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence             345666666666777666666666666666667777777766666666666666666777777666553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.7e-24  Score=205.29  Aligned_cols=253  Identities=18%  Similarity=0.187  Sum_probs=192.3

Q ss_pred             CCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcch-HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           46 DLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      .++..+++.+.+...+ ..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++..+. +..+++|++|++++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence            4666677777777554 45667889999999999999774 689999999999999999987655 88999999999999


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ET  202 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~  202 (542)
                      |.++.++    ..++|++|++++|.+..++.  ..+++|++|++++|.+..+.+..+..+++|++|++++|.+..++ ..
T Consensus        90 n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           90 NYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             SEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             Ccccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence            9988665    33899999999999887654  34688999999999999888777888899999999999887653 33


Q ss_pred             c-CCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhc-ccccEE
Q 009136          203 I-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVL  280 (542)
Q Consensus       203 ~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~~L~~l  280 (542)
                      + ..+++|+.|++++|.+..++.. ..+++|+.|++++|.+..++..+..+++|++|++++|.++.++..... ..|+.+
T Consensus       164 ~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          164 LAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF  242 (317)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred             HhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence            3 4678888888888888766433 347888888888888887777777788888888888877765544322 236666


Q ss_pred             EccCCCCC--CCChhhcCcCCCcEEEcC
Q 009136          281 DLSNNSLS--GLPPEIGKMTTLRKLLLT  306 (542)
Q Consensus       281 ~l~~~~l~--~l~~~l~~~~~L~~L~l~  306 (542)
                      ++++|.+.  .++..+..+++|+.+++.
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             EccCCCccCcCHHHHHhccccceEEECC
Confidence            66666655  244445555555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=2e-24  Score=204.31  Aligned_cols=243  Identities=20%  Similarity=0.203  Sum_probs=145.6

Q ss_pred             cCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccc--cCCcccc-------ccCCccEEEcCCCcCC-cCCccc-
Q 009136           65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM--KIPDEIG-------SATALVKFDCSSNQLK-ELPSSL-  133 (542)
Q Consensus        65 ~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~-~~~~~~-  133 (542)
                      ...++|+.|+++++.+ .+|..+...  |++|++++|.+.  .++..+.       .+++|++|++++|++. .+|..+ 
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            3345566666666666 555544433  666666666654  3444443       5666666666666665 455444 


Q ss_pred             -cCCCCCCeEEccCCccccCCcccccC-----CCccEEEccCCcccccchhhhhccccCcEEEcCCcccCc---ccccc-
Q 009136          134 -GRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MPETI-  203 (542)
Q Consensus       134 -~~~~~L~~L~l~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~-  203 (542)
                       ..+++|++|++++|.+..++..+..+     ++|++|++++|.+..+....++.+++|++|++++|.+..   ++..+ 
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence             56666666666666666555545444     666666666666666665556666666666666666432   22222 


Q ss_pred             -CCCCcccEEEccCCCCccCC----CCCcCCCCCcEEEcCCCcCcccc--hhccCCCCccEEEcCCCcCcccchhhhccc
Q 009136          204 -GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEACQLR  276 (542)
Q Consensus       204 -~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~  276 (542)
                       ..+++|+.|++++|.+..++    ..+..+++|+.|++++|.+...+  ..+..+++|++|++++|.++.++.... .+
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~  275 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AK  275 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SE
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CC
Confidence             55666666666666665322    12245566666666666666433  334455666666666666665555444 45


Q ss_pred             ccEEEccCCCCCCCChhhcCcCCCcEEEcCCCcccc
Q 009136          277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (542)
Q Consensus       277 L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~  312 (542)
                      |+.+++++|.++++|. +..+++|+.+++++|+++.
T Consensus       276 L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          276 LSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             ceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            6666666666666655 6666666666666666543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1.6e-22  Score=188.03  Aligned_cols=217  Identities=21%  Similarity=0.309  Sum_probs=166.0

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcchH-hhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l~~-~~~~   89 (542)
                      ..+++++.+++++|..+.               ++|++|++++|.+..++. .|..+++|++|++++|.+..++. ++..
T Consensus        10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   74 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence            367888889999998763               469999999999987764 78899999999999999987754 7889


Q ss_pred             CCCCcEEecCCCccccCC-ccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCcccc--CCcccccCCCccEE
Q 009136           90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L  165 (542)
                      +++|++|++++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..  ++..+..+++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            999999999999988664 568889999999999999887764 67888999999999998876  57778888999999


Q ss_pred             EccCCcccccchhhhhccccCc----EEEcCCcccCccccccCCCCcccEEEccCCCCccCCCC-CcCCCCCcEEEcCCC
Q 009136          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN  240 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~  240 (542)
                      ++++|.+..+....+..+.+++    ++++++|.++.++.......+|+.|++++|.++.++.. +..+++|+.+++++|
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            9999988887776677666666    66677776666554444444566666666655554432 344555555555555


Q ss_pred             cCc
Q 009136          241 ALS  243 (542)
Q Consensus       241 ~~~  243 (542)
                      ++.
T Consensus       235 ~~~  237 (276)
T 2z62_A          235 PWD  237 (276)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.3e-22  Score=203.35  Aligned_cols=230  Identities=21%  Similarity=0.261  Sum_probs=181.1

Q ss_pred             cccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEec
Q 009136           20 SLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV   98 (542)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l   98 (542)
                      ....+|..+......         +++|++|++++|.+..+ |..|..+++|++|++++|.+...+. +..+++|++|++
T Consensus        18 ~~~~l~~~l~~l~~~---------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~L   87 (487)
T 3oja_A           18 TDSSLKQALASLRQS---------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL   87 (487)
T ss_dssp             CTTTHHHHHHTTSTT---------GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEEC
T ss_pred             chhhhHHHHHHhccc---------CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEe
Confidence            333566666554333         56899999999988866 4688889999999999998886544 888889999999


Q ss_pred             CCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccC-CcccccCCCccEEEccCCcccccch
Q 009136           99 SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSN  177 (542)
Q Consensus        99 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~  177 (542)
                      ++|.++.++.    .++|++|++++|.+..++..  .+++|++|++++|.+..+ +..+..+++|++|++++|.+....+
T Consensus        88 s~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A           88 NNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             CSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred             cCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence            9988876653    38899999999888876543  457888999998888865 4467788889999998888887665


Q ss_pred             hhhh-ccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCcc
Q 009136          178 NLIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLG  256 (542)
Q Consensus       178 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~  256 (542)
                      ..+. .+++|++|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~  240 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE  240 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred             HHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence            5554 678888888888888877543 35788888888888888887778888888888888888888888888888888


Q ss_pred             EEEcCCCcCc
Q 009136          257 TLDLHSNQLK  266 (542)
Q Consensus       257 ~L~l~~~~i~  266 (542)
                      .|++++|.+.
T Consensus       241 ~L~l~~N~l~  250 (487)
T 3oja_A          241 HFDLRGNGFH  250 (487)
T ss_dssp             EEECTTCCBC
T ss_pred             EEEcCCCCCc
Confidence            8888888776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=5.1e-23  Score=206.34  Aligned_cols=222  Identities=22%  Similarity=0.230  Sum_probs=160.5

Q ss_pred             chhHhhcCC----CCCcEEEcCCCCCCcch-HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccc
Q 009136           59 KLKEDLRNL----PLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL  133 (542)
Q Consensus        59 ~l~~~l~~~----~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~  133 (542)
                      .+|..+..+    ++|+.|++++|.+..++ ..|..+++|++|++++|.++..++ +..+++|++|++++|.+..++.  
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~--   97 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV--   97 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE--
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC--
Confidence            455555444    48999999999988774 588899999999999998886654 8888999999999988876653  


Q ss_pred             cCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCc-cccccC-CCCcccE
Q 009136          134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIG-SLSRLIR  211 (542)
Q Consensus       134 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~-~~~~L~~  211 (542)
                        .++|++|++++|.+..++.  ..+++|+.|++++|.+..+.+..+..+++|+.|++++|.+.. .|..+. .+++|+.
T Consensus        98 --~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           98 --GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             --CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             --CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence              2788888888888886654  345788888888888887777667788888888888888765 344443 5777888


Q ss_pred             EEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhc-ccccEEEccCCCCC
Q 009136          212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLS  288 (542)
Q Consensus       212 L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~~L~~l~l~~~~l~  288 (542)
                      |++++|.+..++. ...+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++..... ..|+.+++++|.+.
T Consensus       174 L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          174 LNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             EecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            8888887776643 3347777777777777777766677777777777777766655443222 22555555555444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.1e-21  Score=182.74  Aligned_cols=198  Identities=26%  Similarity=0.322  Sum_probs=118.6

Q ss_pred             ceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcc-hHhhhCCCCCcEEecCCCccccCCccccccCCccE
Q 009136           40 KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVK  118 (542)
Q Consensus        40 ~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~  118 (542)
                      .+.+++++++++++++.++.+|..+.  ++++.|++++|.+..+ +..+..+++|++|++++|.++.++.. ..+++|++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT   81 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence            34556777777777777777765553  5777777777777765 34677777777777777777765443 56677777


Q ss_pred             EEcCCCcCCcCCccccCCCCCCeEEccCCccccCC-cccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccC
Q 009136          119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN  197 (542)
Q Consensus       119 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  197 (542)
                      |++++|++..+|..+..+++|++|++++|.+..++ ..+..+++|++|++++|++..+....|..+++|+.|++++|.++
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            77777777766666666666666666666666554 23556666666666666666555554555555555555555554


Q ss_pred             ccccc-cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCC
Q 009136          198 GMPET-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (542)
Q Consensus       198 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~  240 (542)
                      .+|.. +..+++|+.|++++|.+..+|..+...++|+.+++++|
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence            44432 23344444444444444444433333333444444333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.8e-21  Score=181.47  Aligned_cols=197  Identities=28%  Similarity=0.341  Sum_probs=180.5

Q ss_pred             HHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchHh
Q 009136            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAA   86 (542)
Q Consensus         8 ~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~   86 (542)
                      ..+++++++++++++++|..++               +++++|++++|.+..+ +..|..+++|++|++++|.++.++..
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   73 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD   73 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC
T ss_pred             cCCccEEECCCCCCCcCCCCCC---------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC
Confidence            4578999999999999998774               4699999999999976 46899999999999999999987654


Q ss_pred             hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccCCcc-cccCCCccE
Q 009136           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSK  164 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~  164 (542)
                       ..+++|++|++++|.++.+|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.+..++.. +..+++|+.
T Consensus        74 -~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  152 (290)
T 1p9a_G           74 -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK  152 (290)
T ss_dssp             -SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             -CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence             7899999999999999999999999999999999999999887 5688999999999999999988765 678999999


Q ss_pred             EEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCc
Q 009136          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL  220 (542)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  220 (542)
                      |++++|+++.++...+..+++|++|++++|.++.+|..+....+|+.+++.+|.+.
T Consensus       153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             EECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            99999999999998899999999999999999999999888999999999999765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=3.3e-21  Score=181.56  Aligned_cols=196  Identities=20%  Similarity=0.328  Sum_probs=168.0

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      +++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            567999999999888876 68888999999999999888876 888999999999999888875 588889999999999


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  203 (542)
                      |++..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+..  +..+++|++|++++|.++.++. +
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l  191 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-L  191 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-h
Confidence            99888764 8888999999999998887765 8888999999999998887765  8888999999999999988775 7


Q ss_pred             CCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchh
Q 009136          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (542)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  248 (542)
                      ..+++|+.|++++|.+..++ .+..+++|+.+++++|.+...|..
T Consensus       192 ~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred             cCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCee
Confidence            78899999999999988776 478899999999999988866553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.3e-21  Score=184.18  Aligned_cols=214  Identities=21%  Similarity=0.289  Sum_probs=175.2

Q ss_pred             CcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcC
Q 009136           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL  126 (542)
Q Consensus        47 L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~  126 (542)
                      +..+.+..+.+..+. ....+++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus        21 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           21 AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred             HHHHHhCCCCcCcee-cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence            334445555554321 2345678999999999888876 68888999999999999888877 88899999999999998


Q ss_pred             CcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCC
Q 009136          127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL  206 (542)
Q Consensus       127 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  206 (542)
                      ..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.+..+..  +..+++|++|++++|.++.++. +..+
T Consensus        98 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l  172 (308)
T 1h6u_A           98 KNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANL  172 (308)
T ss_dssp             SCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred             CCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCC
Confidence            8875 68888999999999999888764 8888999999999998887765  7888999999999999888776 7888


Q ss_pred             CcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccch
Q 009136          207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV  270 (542)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~  270 (542)
                      ++|+.|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++..+.
T Consensus       173 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          173 SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence            999999999998887754 7888899999999999988774 7888999999999988876443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=2.6e-21  Score=178.92  Aligned_cols=134  Identities=31%  Similarity=0.472  Sum_probs=92.5

Q ss_pred             ccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceE
Q 009136          378 EAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (542)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  456 (542)
                      .+++|++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++|.+..++...|..+++|++|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            35667777777777666654 35666777777777777777666666677777777777777776666666667777777


Q ss_pred             ecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCc-cccCCCCCCEEECCCCcCC
Q 009136          457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS  533 (542)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~  533 (542)
                      ++++|.++.+.+..|                      ..+++|+.|++++|.++.+|. .|..+++|+.|++++|++.
T Consensus       163 ~L~~n~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAF----------------------DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             ECCSSCCSCCCTTTT----------------------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EecCCcCcEeChhHh----------------------ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            777776665544333                      445777888888888777754 3777888888888888765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=4.8e-21  Score=177.14  Aligned_cols=196  Identities=23%  Similarity=0.360  Sum_probs=122.9

Q ss_pred             CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCCcc-ccccCCccEEEcCC
Q 009136           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSS  123 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~  123 (542)
                      +.+.++++++.++.+|..+.  ++++.|+++++.+..++. +|..+++|++|++++|.++.++.. |..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            35566666666665554443  456666666666665543 556666666666666666655443 35566666666666


Q ss_pred             CcCCcCCc-cccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccc
Q 009136          124 NQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (542)
Q Consensus       124 ~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  201 (542)
                      |++..++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.+..++...+..+++|++|++++|.++.++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            66665543 345566666666666666655433 5566677777777776666666666667777777777777666553


Q ss_pred             -ccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCc
Q 009136          202 -TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       202 -~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~  243 (542)
                       .+..+++|+.|++++|.+..++. .+..+++|+.+++++|++.
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence             35667777777777777776654 4666777778888777655

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=4.4e-21  Score=178.18  Aligned_cols=218  Identities=22%  Similarity=0.253  Sum_probs=174.7

Q ss_pred             cEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCc
Q 009136           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQ  125 (542)
Q Consensus        48 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~  125 (542)
                      ..++..+..+..+|..+.  ++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus        10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            457777777888887664  589999999999998865 88999999999999999987654 68899999999999999


Q ss_pred             CCcCC-ccccCCCCCCeEEccCCccccCCc-ccccCCCccEEEccCCcccccc-hhhhhccccCcEEEcCCcccCccc-c
Q 009136          126 LKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMP-E  201 (542)
Q Consensus       126 ~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~  201 (542)
                      +..++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+. +..+..+++|++|++++|.++.++ .
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence            98665 568889999999999999887765 5888899999999999888754 556888889999999999887765 3


Q ss_pred             ccCCCCccc----EEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchh-ccCCCCccEEEcCCCcCcc
Q 009136          202 TIGSLSRLI----RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKE  267 (542)
Q Consensus       202 ~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~  267 (542)
                      .+..+++++    .+++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.|++++|.+..
T Consensus       168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             HhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            454455555    78888888887766555556788888888888877654 5677888888888877653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.5e-21  Score=174.67  Aligned_cols=192  Identities=16%  Similarity=0.219  Sum_probs=118.0

Q ss_pred             CCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCc-cccCCc-cccccCCccEEEcCC-CcCCcCC-ccccCCCCCCeEE
Q 009136           69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK  143 (542)
Q Consensus        69 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~L~  143 (542)
                      +|++|+++++.++.++. +|..+++|++|++++|. ++.++. .|..+++|++|++++ |+++.++ ..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555555433 45555555555555554 554433 455555555555555 5555444 2445555666666


Q ss_pred             ccCCccccCCcccccCCCcc---EEEccCC-cccccchhhhhccccCc-EEEcCCcccCccccccCCCCcccEEEccCCC
Q 009136          144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (542)
Q Consensus       144 l~~~~~~~l~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  218 (542)
                      +++|.+..++. +..+++|+   +|++++| .+..++...|..+++|+ +|++++|.++.+|......++|+.|++++|+
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~  190 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK  190 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence            66665555554 55555555   6777666 66666666667777777 7777777776666543333677777777774


Q ss_pred             -CccCC-CCCcCC-CCCcEEEcCCCcCcccchhccCCCCccEEEcCCC
Q 009136          219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (542)
Q Consensus       219 -~~~~~-~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~  263 (542)
                       +..++ ..+..+ ++|+.+++++|.+..+|..  .+++|+.|+++++
T Consensus       191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence             76654 456667 7788888888877777664  5677788877765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=1e-21  Score=181.81  Aligned_cols=136  Identities=23%  Similarity=0.285  Sum_probs=82.8

Q ss_pred             cccCCccEEECCCCcccccChh-cccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCce
Q 009136          377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (542)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~  455 (542)
                      ..+++|++|++++|.++.++.. +..+++|++|++++|.+++++...+..+++|++|++++|+++.+....+..+++|++
T Consensus       106 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  185 (272)
T 3rfs_A          106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD  185 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence            4456677777777766665543 566667777777777766666666666677777777777666666655666677777


Q ss_pred             EecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCC-c
Q 009136          456 LDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS-A  534 (542)
Q Consensus       456 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~-~  534 (542)
                      |++++|.+....+..+..                      +++|+.|++++|.+.      ..+++|+.++++.|+++ .
T Consensus       186 L~L~~N~l~~~~~~~~~~----------------------l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~  237 (272)
T 3rfs_A          186 LRLYQNQLKSVPDGVFDR----------------------LTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV  237 (272)
T ss_dssp             EECCSSCCSCCCTTTTTT----------------------CTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGG
T ss_pred             EECCCCcCCccCHHHHhC----------------------CcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCc
Confidence            777776666554444444                      455566666665543      22445555555555554 3


Q ss_pred             CCCCCC
Q 009136          535 LPPELV  540 (542)
Q Consensus       535 lp~~~~  540 (542)
                      +|+.+.
T Consensus       238 ip~~~~  243 (272)
T 3rfs_A          238 VRNSAG  243 (272)
T ss_dssp             BBCTTS
T ss_pred             ccCccc
Confidence            554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.3e-20  Score=170.89  Aligned_cols=193  Identities=21%  Similarity=0.306  Sum_probs=168.7

Q ss_pred             cCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCC-CCcchH-hhhCCCCCcEEecCC-CccccCC-ccccccCCccEE
Q 009136           45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVKF  119 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~-~~~l~~-~~~~l~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L  119 (542)
                      +++++|++++|.++.++. .|..+++|++|++++|. ++.++. +|..+++|++|++++ |.++.++ ..|..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            479999999999998875 78999999999999997 888865 789999999999998 8998776 468899999999


Q ss_pred             EcCCCcCCcCCccccCCCCCC---eEEccCC-ccccCCcc-cccCCCcc-EEEccCCcccccchhhhhccccCcEEEcCC
Q 009136          120 DCSSNQLKELPSSLGRCLNLS---DFKASNN-CITSLPED-LADCSKMS-KLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (542)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~l~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  193 (542)
                      ++++|.++.+|. +..+++|+   +|++++| .+..++.. +..+++|+ +|++++|.++.++...+.. ++|++|++++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            999999998886 88888888   9999999 89887764 88899999 9999999999888887777 8999999999


Q ss_pred             cc-cCccc-cccCCC-CcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCc
Q 009136          194 NL-LNGMP-ETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA  241 (542)
Q Consensus       194 ~~-~~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~  241 (542)
                      |. ++.++ ..+..+ ++|+.|++++|.+..+|..  .+++|+.|+++++.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            95 88875 467888 9999999999999988765  68899999988763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=3.3e-20  Score=169.50  Aligned_cols=177  Identities=30%  Similarity=0.420  Sum_probs=161.0

Q ss_pred             ccccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEcc
Q 009136          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (542)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~  435 (542)
                      ...++++++++.+..+|..+.  +++++|++++|.++.++. .+..+++|++|++++|.+++++...|..+++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            356789999999999998764  799999999999988765 68899999999999999999999989999999999999


Q ss_pred             CCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCch-hhhcCCCCCEEeCCCCcccccC
Q 009136          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPT-DILRLQQLRILDLSQNSLQSIP  513 (542)
Q Consensus       436 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~  513 (542)
                      +|++..++...|..+++|++|++++|.++.+.+..|..+++|+.|++ .+.+..++. .+..+++|+.|++++|.++.++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            99999998888999999999999999999888888999999999999 888888877 5889999999999999999885


Q ss_pred             c-cccCCCCCCEEECCCCcCCcC
Q 009136          514 E-GFKNLTSLTELDLSDNNISAL  535 (542)
Q Consensus       514 ~-~l~~~~~L~~L~l~~~~l~~l  535 (542)
                      . .+..+++|+.|++++|+++-.
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            4 689999999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=3.3e-20  Score=171.62  Aligned_cols=181  Identities=28%  Similarity=0.399  Sum_probs=161.9

Q ss_pred             ccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      ..++++++.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++++...+..+++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            57899999999988775 4777999999999999998875 688999999999999999999998899999999999999


Q ss_pred             CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccC-
Q 009136          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIP-  513 (542)
Q Consensus       437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~-  513 (542)
                      |++..+....|..+++|++|++++|.++.+.+..+..+++|+.|++ .+.+..++.. +..+++|+.|++++|.++.++ 
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            9999988888899999999999999999888888999999999999 7778777665 588999999999999999885 


Q ss_pred             ccccCCCCCCEEECCCCcCCcCCCCC
Q 009136          514 EGFKNLTSLTELDLSDNNISALPPEL  539 (542)
Q Consensus       514 ~~l~~~~~L~~L~l~~~~l~~lp~~~  539 (542)
                      ..+..+++|+.|++++|++..-.+.+
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~~~~l  224 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCTCPGI  224 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             HHHhCCcCCCEEEccCCCccccCcHH
Confidence            45899999999999999987544443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=2.6e-21  Score=188.98  Aligned_cols=226  Identities=17%  Similarity=0.189  Sum_probs=177.8

Q ss_pred             ecCCcEEEcCCCcccc-----hhHhhcCCCCCcEEEcCCCCCCc----chHh-------hhCCCCCcEEecCCCcccc--
Q 009136           44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK--  105 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~~~~----l~~~-------~~~l~~L~~L~l~~~~~~~--  105 (542)
                      +++|++|++++|.+..     ++..+..+++|++|++++|.+..    +|..       +..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            6789999999998873     44557788999999998876552    2333       4788999999999998875  


Q ss_pred             ---CCccccccCCccEEEcCCCcCCc-----CCccccCC---------CCCCeEEccCCccc--cCC---cccccCCCcc
Q 009136          106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS  163 (542)
Q Consensus       106 ---l~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~l~---~~~~~~~~L~  163 (542)
                         ++..+..+++|++|++++|.+..     ++..+..+         ++|++|++++|.+.  .++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               56678888999999999998862     23334444         89999999999886  333   4567888999


Q ss_pred             EEEccCCccccc-----chhhhhccccCcEEEcCCccc-----CccccccCCCCcccEEEccCCCCcc-----CCCCC--
Q 009136          164 KLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSI--  226 (542)
Q Consensus       164 ~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~--  226 (542)
                      +|++++|.+...     ....+..+++|++|++++|.+     ..+|..+..+++|+.|++++|.+..     ++..+  
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            999999988732     222477889999999999998     4577788889999999999999873     34555  


Q ss_pred             cCCCCCcEEEcCCCcCcc-----cchhc-cCCCCccEEEcCCCcCcccc
Q 009136          227 SGCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKEYC  269 (542)
Q Consensus       227 ~~~~~L~~l~l~~~~~~~-----~~~~~-~~~~~L~~L~l~~~~i~~~~  269 (542)
                      ..+++|+.|++++|.+..     +|..+ .++++|++|++++|.++...
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            348999999999999996     77777 66899999999999998655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=3e-21  Score=188.57  Aligned_cols=244  Identities=19%  Similarity=0.170  Sum_probs=156.9

Q ss_pred             CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCc-----chHhhhCCCCCcEEecCCCcccc----CCccc------
Q 009136           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK----IPDEI------  110 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~----l~~~~------  110 (542)
                      .|+...+....+..++..+..+++|++|++++|.+..     ++..+..+++|++|++++|.+..    +|..+      
T Consensus        10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            4444455555566788888999999999999998884     33457789999999999876553    33333      


Q ss_pred             -cccCCccEEEcCCCcCCc-----CCccccCCCCCCeEEccCCcccc-----CCcccccC---------CCccEEEccCC
Q 009136          111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADC---------SKMSKLDVEGN  170 (542)
Q Consensus       111 -~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~---------~~L~~L~l~~~  170 (542)
                       ..+++|++|++++|.+..     ++..+..+++|++|++++|.+..     ++..+..+         ++|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence             577888888888888775     55667778888888888887752     22223333         77788888777


Q ss_pred             cccccch----hhhhccccCcEEEcCCcccC------ccccccCCCCcccEEEccCCCCc-----cCCCCCcCCCCCcEE
Q 009136          171 KLTVLSN----NLIASWTMLTELIASKNLLN------GMPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEF  235 (542)
Q Consensus       171 ~~~~~~~----~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~l  235 (542)
                      .+.....    ..+..+++|++|++++|.++      -++..+..+++|+.|++++|.++     .++..+..+++|+.|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            7763222    23556667777777777665      12225556666777777776663     344555666666666


Q ss_pred             EcCCCcCcc-----cchhcc--CCCCccEEEcCCCcCcc-----cchhh-h-cccccEEEccCCCCCC
Q 009136          236 YMGNNALSA-----LPAELG--KLSKLGTLDLHSNQLKE-----YCVEA-C-QLRLSVLDLSNNSLSG  289 (542)
Q Consensus       236 ~l~~~~~~~-----~~~~~~--~~~~L~~L~l~~~~i~~-----~~~~~-~-~~~L~~l~l~~~~l~~  289 (542)
                      ++++|.+..     ++..+.  .+++|++|++++|.++.     ++... . .++|+.+++++|.++.
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            666666653     244442  26666666666666655     33332 1 1335555555555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=7.6e-21  Score=183.74  Aligned_cols=244  Identities=20%  Similarity=0.223  Sum_probs=178.7

Q ss_pred             eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-----HhhcCCC-CCcEEEcCCCCCCcc-hH
Q 009136           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PA   85 (542)
Q Consensus        13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-----~~l~~~~-~L~~L~l~~~~~~~l-~~   85 (542)
                      .++++.+.++....+....            .++|++|++++|.+...+     +++..++ +|++|++++|.+... +.
T Consensus         2 ~~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~   69 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD   69 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred             ccccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence            3577888887655555553            456999999999988543     6788888 899999999988854 44


Q ss_pred             hhhCC-----CCCcEEecCCCccccCCc-c----cccc-CCccEEEcCCCcCCcCCc-----cccC-CCCCCeEEccCCc
Q 009136           86 AIGEL-----HMLKSLDVSFNSIMKIPD-E----IGSA-TALVKFDCSSNQLKELPS-----SLGR-CLNLSDFKASNNC  148 (542)
Q Consensus        86 ~~~~l-----~~L~~L~l~~~~~~~l~~-~----~~~l-~~L~~L~l~~~~~~~~~~-----~~~~-~~~L~~L~l~~~~  148 (542)
                      .+..+     ++|++|++++|.++..+. .    +..+ ++|++|++++|.+...+.     .+.. .++|++|++++|.
T Consensus        70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            44443     899999999999885433 2    4445 889999999999885542     2334 4689999999998


Q ss_pred             cc-----cCCcccccCC-CccEEEccCCcccccchhhhh----cc-ccCcEEEcCCcccCc-----cccccCC-CCcccE
Q 009136          149 IT-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIR  211 (542)
Q Consensus       149 ~~-----~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~  211 (542)
                      +.     .++..+...+ +|++|++++|.++......+.    .. ++|++|++++|.++.     ++..+.. .++|+.
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence            87     3334455555 899999999998877664443    34 589999999998876     5555555 458999


Q ss_pred             EEccCCCCccCC-----CCCcCCCCCcEEEcCCCcCc--------ccchhccCCCCccEEEcCCCcCccc
Q 009136          212 LDLHQNRILSIP-----SSISGCCSLAEFYMGNNALS--------ALPAELGKLSKLGTLDLHSNQLKEY  268 (542)
Q Consensus       212 L~l~~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~--------~~~~~~~~~~~L~~L~l~~~~i~~~  268 (542)
                      |++++|.+...+     ..+..+++|+.|++++|.+.        .++..+..+++|+.|++++|.+...
T Consensus       230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            999998887542     34567788899999888743        2344566778888888888887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=7.1e-21  Score=183.94  Aligned_cols=115  Identities=22%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             CccEEECCCCcccccCh-----hcccC-ccCcEEEccCCcCCCCChhh----hhC-CCCCcEEEccCCCCcccCC----C
Q 009136          381 EITKLDLSRNSIQELPP-----ELSSC-ASLQTLILSRNKIKDWPDAI----LTS-LSSLSCLKLDNNPLRQVPS----D  445 (542)
Q Consensus       381 ~L~~L~l~~~~l~~l~~-----~~~~~-~~L~~L~l~~~~l~~~~~~~----l~~-l~~L~~L~L~~n~i~~~~~----~  445 (542)
                      +|++|++++|.++....     .+..+ ++|++|++++|.+++.....    +.. .++|++|++++|++.+.+.    .
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            66777777766654332     23344 36777777777666643332    222 3466777776666655433    2


Q ss_pred             ccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136          446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       446 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  510 (542)
                      .+..+++|+.|++++|.+..+...               .+..++..+..+++|+.||+++|++.
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~---------------~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKE---------------QCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHH---------------HHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             HHhcCCCccEEEeccCCccccCHH---------------HHHHHHHHhccCCceEEEecCCCcCC
Confidence            234556666666666654433211               11233344556677788888887765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=2.1e-20  Score=179.21  Aligned_cols=241  Identities=16%  Similarity=0.190  Sum_probs=118.5

Q ss_pred             CcEEEcCCCcccchhHhhcCC--CCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCcccc--CCccccccCCccEEEcC
Q 009136           47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS  122 (542)
Q Consensus        47 L~~L~l~~~~~~~l~~~l~~~--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~  122 (542)
                      ++.++++++.+.  +..+..+  ++++.|+++++.+...+..+..+++|++|++++|.++.  ++..+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            455555555443  2333333  45555555555554443334445555555555555441  44445555555555555


Q ss_pred             CCcCC-cCCccccCCCCCCeEEccCC-ccc--cCCcccccCCCccEEEccCC-ccccc-chhhhhccc-cCcEEEcCCcc
Q 009136          123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKNL  195 (542)
Q Consensus       123 ~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~l~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~  195 (542)
                      +|.+. ..+..+..+++|++|++++| .++  .++..+..+++|++|++++| .++.. ....+..++ +|++|++++|.
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            55544 23344445555555555555 344  23333455555555555555 55432 122344555 55666665553


Q ss_pred             --c--CccccccCCCCcccEEEccCCC-Cc-cCCCCCcCCCCCcEEEcCCCc-Cc-ccchhccCCCCccEEEcCCCcCcc
Q 009136          196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLKE  267 (542)
Q Consensus       196 --~--~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~l~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~i~~  267 (542)
                        +  ..++..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++|++|++++| +..
T Consensus       207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence              2  2344444455566666666665 33 333445555666666666663 22 11123555666666666666 332


Q ss_pred             cchhhhcccccEEEccCCCCCCC
Q 009136          268 YCVEACQLRLSVLDLSNNSLSGL  290 (542)
Q Consensus       268 ~~~~~~~~~L~~l~l~~~~l~~l  290 (542)
                      .........+..+++++|.+++.
T Consensus       286 ~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          286 GTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             TCHHHHHHHSTTSEESCCCSCCT
T ss_pred             HHHHHHHhhCcceEEecccCccc
Confidence            22222222355555555555553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=171.35  Aligned_cols=195  Identities=17%  Similarity=0.143  Sum_probs=87.2

Q ss_pred             CCCcEEEcCCCCCCc-chHhh--hCCCCCcEEecCCCccccC-C----ccccccCCccEEEcCCCcCCcCC-ccccCCCC
Q 009136           68 PLLTVLNVSHNKLSE-LPAAI--GELHMLKSLDVSFNSIMKI-P----DEIGSATALVKFDCSSNQLKELP-SSLGRCLN  138 (542)
Q Consensus        68 ~~L~~L~l~~~~~~~-l~~~~--~~l~~L~~L~l~~~~~~~l-~----~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~  138 (542)
                      ++|++|++++|.+.. .|..+  ..+++|++|++++|.++.. +    ..+..+++|++|++++|.+..++ ..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            345555555555442 23333  4455555555555554421 1    11223455555555555554333 34444555


Q ss_pred             CCeEEccCCcccc---C--CcccccCCCccEEEccCCcccccchh---hhhccccCcEEEcCCcccCcc-ccccCCC---
Q 009136          139 LSDFKASNNCITS---L--PEDLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLLNGM-PETIGSL---  206 (542)
Q Consensus       139 L~~L~l~~~~~~~---l--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~-~~~~~~~---  206 (542)
                      |++|++++|.+..   +  +..+..+++|++|++++|.++.++..   .+..+++|++|++++|.++.. |..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            5555555554331   1  11123445555555555555433221   233445555555555555443 3333332   


Q ss_pred             CcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcC
Q 009136          207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL  265 (542)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i  265 (542)
                      ++|+.|++++|.++.+|..+.  ++|+.|++++|.+..+|. +..+++|+.|++++|.+
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred             CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence            345555555554444444332  444555555554444433 34444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=5.5e-20  Score=173.72  Aligned_cols=198  Identities=18%  Similarity=0.126  Sum_probs=166.0

Q ss_pred             ecCCcEEEcCCCccc-chhHhh--cCCCCCcEEEcCCCCCCcc----h-HhhhCCCCCcEEecCCCccccCC-ccccccC
Q 009136           44 AVDLQKLILAHNNIE-KLKEDL--RNLPLLTVLNVSHNKLSEL----P-AAIGELHMLKSLDVSFNSIMKIP-DEIGSAT  114 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~-~l~~~l--~~~~~L~~L~l~~~~~~~l----~-~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~  114 (542)
                      .++|++|++++|.+. ..|..+  ..+++|++|++++|.+...    + ..+..+++|++|++++|.+..++ ..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            467999999999987 456666  8899999999999998852    2 35568999999999999998765 6788999


Q ss_pred             CccEEEcCCCcCCc---CC--ccccCCCCCCeEEccCCccccCCcc----cccCCCccEEEccCCcccccchhhhhcc--
Q 009136          115 ALVKFDCSSNQLKE---LP--SSLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLTVLSNNLIASW--  183 (542)
Q Consensus       115 ~L~~L~l~~~~~~~---~~--~~~~~~~~L~~L~l~~~~~~~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~--  183 (542)
                      +|++|++++|++..   ++  ..+..+++|++|++++|.++.++..    +..+++|++|++++|.+....+..+..+  
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999998753   32  3346889999999999999866542    5778999999999999998754445555  


Q ss_pred             -ccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcc
Q 009136          184 -TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA  244 (542)
Q Consensus       184 -~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  244 (542)
                       ++|++|++++|.++.+|..+.  ++|+.|++++|.++.+|. +..+++|+.|++++|.+++
T Consensus       250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred             cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence             799999999999999998774  899999999999998865 7888999999999998863

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.1e-18  Score=162.62  Aligned_cols=167  Identities=22%  Similarity=0.344  Sum_probs=84.1

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      +++|++|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence            445666666666555553 35555666666666665555544 5555566666666555555432 55555555555555


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  203 (542)
                      |++..+ ..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+..  +..+++|++|++++|.++.++. +
T Consensus       122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l  196 (291)
T 1h6t_A          122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L  196 (291)
T ss_dssp             SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred             CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence            555544 2344455555555555555444 334444455555555444444332  4444444444444444443332 3


Q ss_pred             CCCCcccEEEccCCC
Q 009136          204 GSLSRLIRLDLHQNR  218 (542)
Q Consensus       204 ~~~~~L~~L~l~~~~  218 (542)
                      ..+++|+.|++++|.
T Consensus       197 ~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          197 AGLKNLDVLELFSQE  211 (291)
T ss_dssp             TTCTTCSEEEEEEEE
T ss_pred             ccCCCCCEEECcCCc
Confidence            334444444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=1.8e-18  Score=157.99  Aligned_cols=171  Identities=26%  Similarity=0.382  Sum_probs=90.2

Q ss_pred             hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchH-hhh
Q 009136           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIG   88 (542)
Q Consensus        11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~-~~~   88 (542)
                      .+.++++++.++++|..+.               +++++|++++|.+..++ ..|..+++|++|++++|.+..++. .+.
T Consensus        16 ~~~l~~~~~~l~~~p~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   80 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP---------------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD   80 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC---------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             CeEEecCCCCccccCCCCC---------------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence            4556666666666665442               24666666666665443 345556666666666666554432 455


Q ss_pred             CCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcCCcc-ccCCCCCCeEEccCCccccCCc-ccccCCCccEE
Q 009136           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL  165 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L  165 (542)
                      .+++|++|++++|.++.++. .+..+++|++|++++|+++.++.. +..+++|++|++++|.+..++. .+..+++|++|
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence            55666666666665554432 345555555555555555554432 3445555555555555554443 24445555555


Q ss_pred             EccCCcccccchhhhhccccCcEEEcCCccc
Q 009136          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  196 (542)
                      ++++|.+..+....+..+++|++|++++|.+
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            5555555544444444444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=1.4e-18  Score=175.24  Aligned_cols=185  Identities=31%  Similarity=0.438  Sum_probs=144.3

Q ss_pred             CCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCc
Q 009136           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~  125 (542)
                      +|++|++++|.+..+|..+  .++|+.|++++|.++.+|   ..+++|++|++++|.++.+|. +..  +|++|++++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            7888888888887777655  367888888888888777   456788888888888888777 554  88888888888


Q ss_pred             CCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCC
Q 009136          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (542)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  205 (542)
                      ++.+|.   .+++|++|++++|.++.+|.   .+++|++|++++|.++.++.  +.  ++|+.|++++|.++.+|. +..
T Consensus       132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~  200 (571)
T 3cvr_A          132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV  200 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred             CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH
Confidence            887776   57788888888888887765   56788888888888887666  43  788888888888888887 543


Q ss_pred             CCcc-------cEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc-ccchhccC
Q 009136          206 LSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGK  251 (542)
Q Consensus       206 ~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~  251 (542)
                        +|       +.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..
T Consensus       201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence              67       9999999999988888888999999999999887 44555443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=1.1e-19  Score=174.28  Aligned_cols=246  Identities=15%  Similarity=0.184  Sum_probs=183.1

Q ss_pred             hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCc--chHhh
Q 009136           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAAI   87 (542)
Q Consensus        10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~--l~~~~   87 (542)
                      ..+.+|++++.+.  |..+ ..+.          .++++.|+++++.+...+..+..+++|++|++++|.+..  ++..+
T Consensus        48 ~~~~l~l~~~~~~--~~~~-~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~  114 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVT-GRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL  114 (336)
T ss_dssp             TSSEEECTTCBCC--HHHH-HHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH
T ss_pred             hheeeccccccCC--HHHH-Hhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH
Confidence            3688999998776  2332 2210          167999999999888666566788999999999998873  67788


Q ss_pred             hCCCCCcEEecCCCccc-cCCccccccCCccEEEcCCC-cCC--cCCccccCCCCCCeEEccCC-cccc--CCcccccCC
Q 009136           88 GELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADCS  160 (542)
Q Consensus        88 ~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~--l~~~~~~~~  160 (542)
                      ..+++|++|++++|.++ ..+..+..+++|++|++++| .++  .++..+..+++|++|++++| .++.  ++..+..++
T Consensus       115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            89999999999999877 45677888999999999998 576  35666788899999999999 8874  566678888


Q ss_pred             -CccEEEccCCc--cc-ccchhhhhccccCcEEEcCCcc-cC-ccccccCCCCcccEEEccCCC-Cc-cCCCCCcCCCCC
Q 009136          161 -KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSL  232 (542)
Q Consensus       161 -~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L  232 (542)
                       +|++|++++|.  ++ ..-...+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++|
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L  274 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  274 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence             99999999984  43 2223346788999999999998 43 456677888999999999985 22 111357789999


Q ss_pred             cEEEcCCCcCcc-cchhccCCCCccEEEcCCCcCcccchh
Q 009136          233 AEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVE  271 (542)
Q Consensus       233 ~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~  271 (542)
                      +.|++++| +.. ....+.  ..++.|++++|.++.....
T Consensus       275 ~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          275 KTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             CEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCS
T ss_pred             CEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCC
Confidence            99999998 442 112221  2355566888888765443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=4e-18  Score=158.93  Aligned_cols=175  Identities=23%  Similarity=0.314  Sum_probs=157.5

Q ss_pred             HHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcch
Q 009136            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (542)
Q Consensus         5 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~   84 (542)
                      ++.+.+++.|+++++.+++++.  +..            +++|++|++++|.+..++. +..+++|++|++++|.+..++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~--~~~------------l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~  106 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQG--IQY------------LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS  106 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT--GGG------------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred             hhhcCcccEEEccCCCcccChh--Hhc------------CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence            4678899999999999998864  232            7899999999999998876 999999999999999999875


Q ss_pred             HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccE
Q 009136           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (542)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~  164 (542)
                      . +..+++|++|++++|.++.+ ..+..+++|++|++++|++..+ ..+..+++|++|++++|.+..++. +..+++|+.
T Consensus       107 ~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~  182 (291)
T 1h6t_A          107 S-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQN  182 (291)
T ss_dssp             G-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             h-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCE
Confidence            4 89999999999999999987 4688999999999999999988 678899999999999999998876 899999999


Q ss_pred             EEccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (542)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (542)
                      |++++|.++.++.  +..+++|+.|++++|.+...|
T Consensus       183 L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          183 LYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             EECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred             EECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence            9999999998754  899999999999999987655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.7e-18  Score=173.29  Aligned_cols=180  Identities=26%  Similarity=0.376  Sum_probs=157.9

Q ss_pred             CCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCC
Q 009136           68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN  147 (542)
Q Consensus        68 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  147 (542)
                      .+|+.|+++++.++.+|..+  .++|++|++++|.++.+|   ..+++|++|++++|+++.+|. +..  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            48999999999999888755  378999999999999988   557999999999999999887 655  9999999999


Q ss_pred             ccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCc
Q 009136          148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS  227 (542)
Q Consensus       148 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  227 (542)
                      .+..+|.   .+++|+.|++++|.++.++.    .+++|++|++++|.++.+|. +.  ++|+.|++++|.++.+|. +.
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~  199 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VP  199 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HH
Confidence            9999887   68999999999999988765    57899999999999999988 55  899999999999998887 54


Q ss_pred             CCCCC-------cEEEcCCCcCcccchhccCCCCccEEEcCCCcCccc
Q 009136          228 GCCSL-------AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (542)
Q Consensus       228 ~~~~L-------~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~  268 (542)
                      .  +|       +.|++++|.+..+|..+..+++|+.|++++|.++..
T Consensus       200 ~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          200 V--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             ----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             H--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            4  77       999999999999999888899999999999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=6.9e-19  Score=155.83  Aligned_cols=175  Identities=27%  Similarity=0.379  Sum_probs=138.5

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n  437 (542)
                      -+.++++++.+..+|..+  .+++++|++++|.++.++. .+..+++|++|++++|.+++++...|..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            356778888888887655  4689999999998888775 4678899999999999999888888888999999999999


Q ss_pred             CCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccCcc
Q 009136          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG  515 (542)
Q Consensus       438 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~  515 (542)
                      ++..+....|..+++|++|++++|.++.+.+..+..+++|+.|++ .+.+..++.. +..+++|+.|++++|.+.     
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence            988888777888899999999999888877777788888888777 6666666654 567788888888888654     


Q ss_pred             ccCCCCCCEEECCCCcCC-cCCCCCCC
Q 009136          516 FKNLTSLTELDLSDNNIS-ALPPELVS  541 (542)
Q Consensus       516 l~~~~~L~~L~l~~~~l~-~lp~~~~~  541 (542)
                       ..+++|+.|++++|+++ .+|+.+.+
T Consensus       162 -~~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          162 -CTCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             -CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             -cCCCCHHHHHHHHHhCCceeeccCcc
Confidence             34567777777777776 67766654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=3.9e-18  Score=163.76  Aligned_cols=232  Identities=21%  Similarity=0.267  Sum_probs=150.6

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCc-chH-hhh
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE-LPA-AIG   88 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~-l~~-~~~   88 (542)
                      +++++++++++++|.+++               +++++|++++|.++.+|. +|.++++|++|++++|.+.+ ++. +|.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~   76 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   76 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred             CEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence            567888888888887763               358888888888888874 57888888888888888753 443 677


Q ss_pred             CCCCCcE-EecCCCccccC-CccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccC-CccccCCcc-cccC-CCc
Q 009136           89 ELHMLKS-LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPED-LADC-SKM  162 (542)
Q Consensus        89 ~l~~L~~-L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~l~~~-~~~~-~~L  162 (542)
                      +++++++ +.++.|.++.+ |..|..+++|++|++++|++..++. .+....++..+++.+ +.+..++.. +..+ ..+
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence            7777665 44555677766 4557778888888888887776653 334455666676654 345555432 3333 356


Q ss_pred             cEEEccCCcccccchhhhhccccCcEEEcC-CcccCcccc-ccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCC
Q 009136          163 SKLDVEGNKLTVLSNNLIASWTMLTELIAS-KNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (542)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~  240 (542)
                      +.|++++|.++.+...+|.. .+++++++. +|.++.+|. .+..+++|+.|++++|+++.+|..  .+.+|+.|.+.++
T Consensus       157 ~~L~L~~N~i~~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          157 VILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             EEEECCSSCCCEECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC
T ss_pred             hhhccccccccCCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC
Confidence            77777777777766664433 456666665 356666664 456677777777777777666542  2445555555443


Q ss_pred             -cCcccchhccCCCCccEEEcCC
Q 009136          241 -ALSALPAELGKLSKLGTLDLHS  262 (542)
Q Consensus       241 -~~~~~~~~~~~~~~L~~L~l~~  262 (542)
                       .++.+|. +..+++|+.+++.+
T Consensus       234 ~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          234 YNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCCCCCC-TTTCCSCCEEECSC
T ss_pred             CCcCcCCC-chhCcChhhCcCCC
Confidence             3445553 56666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=5.6e-18  Score=162.68  Aligned_cols=234  Identities=20%  Similarity=0.243  Sum_probs=175.9

Q ss_pred             cEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccc-cCC-ccccccCCccE-EEcCC
Q 009136           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM-KIP-DEIGSATALVK-FDCSS  123 (542)
Q Consensus        48 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~-~l~-~~~~~l~~L~~-L~l~~  123 (542)
                      ++++.+++.++++|..+.  +++++|++++|.++.+|. +|.++++|++|+|++|.+. .++ ..|.+++++++ +.+..
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            678899999999998773  689999999999999976 7899999999999999875 454 45788988776 55667


Q ss_pred             CcCCcCC-ccccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccC-Ccccccchhhhhccc-cCcEEEcCCcccCcc
Q 009136          124 NQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEG-NKLTVLSNNLIASWT-MLTELIASKNLLNGM  199 (542)
Q Consensus       124 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~  199 (542)
                      |++..++ ..+..+++|++|++++|.+..++.. +....++..+++.+ +.+..+....|.... .++.|++++|.++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            8888774 5678899999999999999877653 55567788888855 577777777676664 577888888888888


Q ss_pred             ccccCCCCcccEEEccC-CCCccCCC-CCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccc
Q 009136          200 PETIGSLSRLIRLDLHQ-NRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL  277 (542)
Q Consensus       200 ~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L  277 (542)
                      +.......+|+.+.+.+ |.+..+|. .+..+++|+.|++++|.++.+|..  .+.+|+.|.+.++              
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~--------------  233 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST--------------  233 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC--------------
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC--------------
Confidence            77666667788888864 66777764 467778888888888888777653  3456666655443              


Q ss_pred             cEEEccCCCCCCCChhhcCcCCCcEEEcCC
Q 009136          278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTG  307 (542)
Q Consensus       278 ~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~  307 (542)
                             +.++.+|. +..+++|+.+++..
T Consensus       234 -------~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          234 -------YNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             -------TTCCCCCC-TTTCCSCCEEECSC
T ss_pred             -------CCcCcCCC-chhCcChhhCcCCC
Confidence                   12344443 56677777777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=4.2e-18  Score=152.81  Aligned_cols=152  Identities=32%  Similarity=0.435  Sum_probs=107.2

Q ss_pred             cccEEEecCCCCCCCCccccccCCccEEECCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      ..+.+++++..+..+|..+  .++|++|++++|.++.+ +..+..+++|++|++++|.++.++...|..+++|++|+|++
T Consensus        20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            3456666666666666544  36667777777666665 34566666677777777766666666666666777777776


Q ss_pred             CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccC-cc
Q 009136          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EG  515 (542)
Q Consensus       437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~-~~  515 (542)
                      |+++.+....|..+++|++|++++|++.                       .+|..+..+++|+.|++++|.++.++ ..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-----------------------ELPRGIERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-----------------------ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence            6666666655666666677666666554                       44556677899999999999999886 45


Q ss_pred             ccCCCCCCEEECCCCcCCc
Q 009136          516 FKNLTSLTELDLSDNNISA  534 (542)
Q Consensus       516 l~~~~~L~~L~l~~~~l~~  534 (542)
                      |..+++|+.|++++|++.-
T Consensus       155 ~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             TTTCTTCCEEECTTSCBCT
T ss_pred             HhCCCCCCEEEeeCCCccC
Confidence            8899999999999998863

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=1.5e-17  Score=148.17  Aligned_cols=150  Identities=29%  Similarity=0.457  Sum_probs=122.8

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n  437 (542)
                      -+.++++++.++.+|..+.  +++++|++++|.++.++. .|..+++|++|++++|.++.+.+..|.++++|++|+|++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3678889999998887664  789999999999998876 6888999999999999999998888999999999999999


Q ss_pred             CCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCc-cc
Q 009136          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GF  516 (542)
Q Consensus       438 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~-~l  516 (542)
                      +++.++...|.++++|++|++++|+++.+.+..|..+                      ++|+.|++++|.++.++. .|
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL----------------------HNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC----------------------TTCCEEECCSSCCSCCCTTTT
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC----------------------CCCCEEECCCCcCCEECHHHH
Confidence            9999988888999999999999999987766666544                      566666777776666643 36


Q ss_pred             cCCCCCCEEECCCCcC
Q 009136          517 KNLTSLTELDLSDNNI  532 (542)
Q Consensus       517 ~~~~~L~~L~l~~~~l  532 (542)
                      ..+++|+.|++++|++
T Consensus       149 ~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          149 SPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTCTTCCEEECCSSCE
T ss_pred             hCCCCCCEEEeCCCCc
Confidence            6666777777766665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=8.7e-18  Score=154.03  Aligned_cols=172  Identities=23%  Similarity=0.262  Sum_probs=114.9

Q ss_pred             HHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHh
Q 009136            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (542)
Q Consensus         7 ~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~   86 (542)
                      .++++..++++++.+++++ .+..             +++|++|++++|.+..++ .+..+++|+.|++++|.+..++. 
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~-------------l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKE-------------LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-   80 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHH-------------HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             HHHHHHHHHhcCCCccccc-chhh-------------cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-
Confidence            3455666777777777766 2222             567777777777777766 66777777777777777777665 


Q ss_pred             hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEE
Q 009136           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  166 (542)
                      +..+++|++|++++|.++.++....  ++|++|++++|+++.++ .+..+++|++|++++|.+..++ .+..+++|++|+
T Consensus        81 l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~  156 (263)
T 1xeu_A           81 LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLD  156 (263)
T ss_dssp             GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEE
T ss_pred             hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEE
Confidence            7777777777777777776654333  67777777777777654 4666777777777777766664 566666777777


Q ss_pred             ccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (542)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (542)
                      +++|.+..+  ..+..+++|+.|++++|.+...|
T Consensus       157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            777666655  33556666666666666654443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.1e-18  Score=159.92  Aligned_cols=170  Identities=22%  Similarity=0.279  Sum_probs=139.4

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~  438 (542)
                      +..+++.++.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++++.  +..+++|++|++++|+
T Consensus        21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence            445566777777666 5667888999999998888887 57888899999999998888776  7888999999999998


Q ss_pred             CcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCcccccCcccc
Q 009136          439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFK  517 (542)
Q Consensus       439 i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~  517 (542)
                      +.+++..  .. ++|++|++++|+++.+  ..+..+++|+.|++ .+.+..++ .+..+++|+.|++++|.++.+ ..+.
T Consensus        97 l~~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~  169 (263)
T 1xeu_A           97 LKNLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLT  169 (263)
T ss_dssp             CSCCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTST
T ss_pred             cCCcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhc
Confidence            8887653  33 8899999999988765  35788888998888 77777775 688899999999999999988 6689


Q ss_pred             CCCCCCEEECCCCcCCcCCCCC
Q 009136          518 NLTSLTELDLSDNNISALPPEL  539 (542)
Q Consensus       518 ~~~~L~~L~l~~~~l~~lp~~~  539 (542)
                      .+++|+.|++++|+++..|...
T Consensus       170 ~l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             TCCCCCEEEEEEEEEECCCEEC
T ss_pred             cCCCCCEEeCCCCcccCCcccc
Confidence            9999999999999998776543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.9e-17  Score=169.13  Aligned_cols=171  Identities=23%  Similarity=0.335  Sum_probs=120.8

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      +++|+.|++++|.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..++ .+..+++|++|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence            566777777777777665 46777777777777777776654 777777777777777777665 567777777777777


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  203 (542)
                      |++..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.+  +..+++|+.|++++|.+..++ .+
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l  193 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL  193 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             CCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence            7777653 466777777777777777766 456677777777777777766554  666777777777777776664 46


Q ss_pred             CCCCcccEEEccCCCCccC
Q 009136          204 GSLSRLIRLDLHQNRILSI  222 (542)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~  222 (542)
                      ..+++|+.|++++|.+...
T Consensus       194 ~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TTCTTCSEEECCSEEEECC
T ss_pred             ccCCCCCEEEccCCcCcCC
Confidence            6667777777777666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=146.85  Aligned_cols=151  Identities=26%  Similarity=0.388  Sum_probs=123.9

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      -+.++++++.++.+|..+  ...+++|++++|.++.++.  .|..+++|++|++++|.+++++...|.++++|++|+|++
T Consensus        13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            468899999999888765  4567899999999988743  478999999999999999999888899999999999999


Q ss_pred             CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccccc-Ccc
Q 009136          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEG  515 (542)
Q Consensus       437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l-~~~  515 (542)
                      |++..+....|..+++|++|++++|.++.+.+..|..+                      ++|+.|++++|.++.+ |..
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL----------------------SSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC----------------------TTCSEEECTTSCCCCBCTTT
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC----------------------ccCCEEECCCCcCCEECHHH
Confidence            99998888888999999999999999887766555544                      6677777777777766 566


Q ss_pred             ccCCCCCCEEECCCCcCC
Q 009136          516 FKNLTSLTELDLSDNNIS  533 (542)
Q Consensus       516 l~~~~~L~~L~l~~~~l~  533 (542)
                      |..+++|+.|++++|+++
T Consensus       149 ~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTTCTTCCEEECCSCCEE
T ss_pred             hcCCCCCCEEEecCcCCc
Confidence            777777777777777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.2e-18  Score=152.55  Aligned_cols=151  Identities=15%  Similarity=0.277  Sum_probs=86.4

Q ss_pred             cCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEec
Q 009136          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (542)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l  458 (542)
                      +++|++|++++|.++.+| .+..+++|++|++++|.++.++  .+..+++|++|++++|++.......+..+++|++|++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            344555555555554444 3444555555555555444332  2344555555555555554433333444555555555


Q ss_pred             CCCcCCCCCCCCCCCCchhHHHHH-hhc-cccCchhhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcCCc
Q 009136          459 SYNIASLPENPPFSSLPHLQELYL-RMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA  534 (542)
Q Consensus       459 ~~n~~~~~~~~~~~~~~~L~~L~l-~~~-~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~  534 (542)
                      ++|.++...+..+..+++|++|++ .+. +..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|+|..
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            555544433344444555555555 332 34444 5778899999999999999887 68999999999999999864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=4e-18  Score=164.36  Aligned_cols=173  Identities=28%  Similarity=0.444  Sum_probs=151.4

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCCcccccChh-cc-cCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-~~-~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      -+.++++++.+..+|..+  .+.++.|++++|.++.++.. +. .+++|++|++++|.++.++...|..+++|++|+|++
T Consensus        20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            467899999999998766  45799999999999998764 55 899999999999999999988899999999999999


Q ss_pred             CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhh----hcCCCCCEEeCCCCcccc
Q 009136          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDI----LRLQQLRILDLSQNSLQS  511 (542)
Q Consensus       437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l----~~~~~L~~L~l~~~~l~~  511 (542)
                      |++..+....|..+++|+.|++++|.+..+.+..|..+++|+.|++ .+.+..+|..+    ..+++|+.|++++|.++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            9999998888999999999999999999888889999999999999 88888888775    578999999999999998


Q ss_pred             cC-ccccCCCC--CCEEECCCCcCC
Q 009136          512 IP-EGFKNLTS--LTELDLSDNNIS  533 (542)
Q Consensus       512 l~-~~l~~~~~--L~~L~l~~~~l~  533 (542)
                      +| ..+..++.  ++.|++++|++.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            86 45778887  488999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=7.3e-17  Score=164.77  Aligned_cols=175  Identities=23%  Similarity=0.316  Sum_probs=157.0

Q ss_pred             HHHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcch
Q 009136            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (542)
Q Consensus         5 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~   84 (542)
                      +..+++|+.|+++++.+.++|. + ..            +++|+.|++++|.+..++. +..+++|+.|++++|.+..++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~-l-~~------------l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~  103 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQG-I-QY------------LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS  103 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTT-G-GG------------CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred             hhcCCCCCEEECcCCCCCCChH-H-cc------------CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh
Confidence            4567889999999999998873 2 22            7899999999999998876 899999999999999999876


Q ss_pred             HhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccE
Q 009136           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (542)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~  164 (542)
                       .+..+++|++|+|++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|++|++++|.+..++. +..+++|+.
T Consensus       104 -~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~  179 (605)
T 1m9s_A          104 -SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQN  179 (605)
T ss_dssp             -TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             -hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCE
Confidence             7899999999999999999874 588999999999999999988 678899999999999999998766 899999999


Q ss_pred             EEccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (542)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (542)
                      |++++|.+..++  .+..+++|+.|++++|.+...|
T Consensus       180 L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          180 LYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             EECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred             EECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence            999999999874  4899999999999999987655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.72  E-value=3.6e-17  Score=144.72  Aligned_cols=156  Identities=33%  Similarity=0.448  Sum_probs=138.7

Q ss_pred             ccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (542)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  461 (542)
                      -+.++++++.++.+|..+  .++|++|++++|.+++++...+..+++|++|++++|++..+....|..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            367888888999988654  568999999999999999988999999999999999999998888899999999999999


Q ss_pred             cCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCcccccCcc-ccCCCCCCEEECCCCcCCcCCCC
Q 009136          462 IASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE  538 (542)
Q Consensus       462 ~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~~lp~~  538 (542)
                      .++.+.+..+..+++|+.|++ .+.+..++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|++..-.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence            999888888999999999999 7788887765 68899999999999999988654 89999999999999998755444


Q ss_pred             C
Q 009136          539 L  539 (542)
Q Consensus       539 ~  539 (542)
                      +
T Consensus       167 l  167 (208)
T 2o6s_A          167 I  167 (208)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.3e-16  Score=143.13  Aligned_cols=147  Identities=24%  Similarity=0.360  Sum_probs=89.1

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccch-hHhhcCCCCCcEEEcCCCCCCcchH-hhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~   89 (542)
                      +.+++++++++.+|..+.               ++|++|++++|.+..+ +..|..+++|++|++++|.+..++. .|..
T Consensus        22 ~~v~c~~~~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP---------------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CEeEccCCCcCccCCCCC---------------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence            456666666666666542               3566666666666654 4456666666666666666665543 4566


Q ss_pred             CCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCc-ccccCCCccEEEc
Q 009136           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV  167 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l  167 (542)
                      +++|++|++++|.++.++.. +..+++|++|++++|++..+|..+..+++|++|++++|.+..++. .+..+++|+.|++
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            66666666666666655433 456666666666666666666666666666666666666665543 2555566666666


Q ss_pred             cCCccc
Q 009136          168 EGNKLT  173 (542)
Q Consensus       168 ~~~~~~  173 (542)
                      .+|++.
T Consensus       167 ~~N~~~  172 (229)
T 3e6j_A          167 FGNPWD  172 (229)
T ss_dssp             TTSCBC
T ss_pred             eCCCcc
Confidence            665544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.70  E-value=1.1e-15  Score=149.22  Aligned_cols=328  Identities=13%  Similarity=0.183  Sum_probs=184.5

Q ss_pred             ccchh-HhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccC-CccccccCCccEEEcCCCcCCcCC-cc
Q 009136           57 IEKLK-EDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SS  132 (542)
Q Consensus        57 ~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~  132 (542)
                      ++.|. .+|.+|.+|+.+.+.+ .++.+.. +|.+|.+|+.+++..+ ++.+ ...|..+++|+.+.+..+ +..+. .+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            33443 3566666666666653 3455533 5666666666666543 3333 234556666666555432 22222 23


Q ss_pred             ccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccE
Q 009136          133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIR  211 (542)
Q Consensus       133 ~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~  211 (542)
                      |.++. +..+.........-...|..+.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+ ..++..+..|+.
T Consensus       136 F~~~~-~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          136 FKGCD-FKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTTCC-CSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             eeccc-ccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            33332 22222221111111234666777777777543 45566666777777777777655 3333 235666677777


Q ss_pred             EEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCC
Q 009136          212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (542)
Q Consensus       212 L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~  291 (542)
                      +.+..+.. .+......+.+|+.+.+.+....--..++..+..++.+.+..+... +                     -.
T Consensus       213 i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i---------------------~~  269 (394)
T 4fs7_A          213 MEFPNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-I---------------------GG  269 (394)
T ss_dssp             CCCCTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-E---------------------CS
T ss_pred             eecCCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-e---------------------ec
Confidence            66655432 2223344556777777765432222345666777777777654211 1                     11


Q ss_pred             hhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCC
Q 009136          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (542)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (542)
                      ..+..+..++.+......+   +                                                         
T Consensus       270 ~~F~~~~~l~~~~~~~~~i---~---------------------------------------------------------  289 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIV---P---------------------------------------------------------  289 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEE---C---------------------------------------------------------
T ss_pred             cccccccccceeccCceee---c---------------------------------------------------------
Confidence            2344555665554433211   0                                                         


Q ss_pred             CCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCC
Q 009136          372 IPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI  450 (542)
Q Consensus       372 ~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~  450 (542)
                       ...+..+.+|+++.+.++ ++.++. +|.+|.+|+.+++.. .++.++..+|.+|.+|+.+.+..+ +..++..+|.+|
T Consensus       290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  365 (394)
T 4fs7_A          290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC  365 (394)
T ss_dssp             -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred             -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence             012334567777777653 555544 577888888888864 477777788888888888888765 777888888888


Q ss_pred             CCCceEecCCCcCCCCCCCCCCCCchhHH
Q 009136          451 PMLQILDLSYNIASLPENPPFSSLPHLQE  479 (542)
Q Consensus       451 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~  479 (542)
                      ++|+.+++..+ +... ..+|.+|++|+.
T Consensus       366 ~~L~~i~lp~~-~~~~-~~~F~~c~~L~~  392 (394)
T 4fs7_A          366 INLKKVELPKR-LEQY-RYDFEDTTKFKW  392 (394)
T ss_dssp             TTCCEEEEEGG-GGGG-GGGBCTTCEEEE
T ss_pred             CCCCEEEECCC-CEEh-hheecCCCCCcE
Confidence            88888888754 3222 346777777764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.70  E-value=4.6e-16  Score=151.91  Aligned_cols=101  Identities=15%  Similarity=0.234  Sum_probs=60.9

Q ss_pred             cccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceE
Q 009136          377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (542)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  456 (542)
                      ..+..++.+......+.  ..+|..|.+|+.+.+..+ ++.++..+|.+|.+|+.+++.. .++.++..+|.+|.+|+.+
T Consensus       273 ~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i  348 (394)
T 4fs7_A          273 YNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNI  348 (394)
T ss_dssp             TTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEE
T ss_pred             ccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEE
Confidence            33555555555443221  124667777777777543 6666666777777777777753 3666776777777777777


Q ss_pred             ecCCCcCCCCCCCCCCCCchhHHHHH
Q 009136          457 DLSYNIASLPENPPFSSLPHLQELYL  482 (542)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~~L~l  482 (542)
                      ++..+ ++.+...+|.+|++|+++.+
T Consensus       349 ~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          349 NFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             CCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             EECcc-ccEehHHHhhCCCCCCEEEE
Confidence            77654 55555556665554444433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=1.8e-16  Score=141.19  Aligned_cols=147  Identities=18%  Similarity=0.304  Sum_probs=93.5

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhhhC
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~~~   89 (542)
                      +.+++++++++++|..+.               +++++|++++|.+..++. .|..+++|+.|++++|.+..+ |.+|..
T Consensus        14 ~~v~c~~~~l~~iP~~l~---------------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~   78 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP---------------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG   78 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC---------------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CEEEcCCCCcCcCCCccC---------------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence            456777777777776553               357777777777766553 566677777777777777655 456667


Q ss_pred             CCCCcEEecCCCccccCCcc-ccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccCCcc-cccCCCccEEE
Q 009136           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLD  166 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~  166 (542)
                      +++|++|++++|.++.+|.. |..+++|++|++++|++..++ ..+..+++|++|++++|.+..++.. +..+++|++|+
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            77777777777776666544 466667777777776666553 4455666666666666666655433 55556666666


Q ss_pred             ccCCccc
Q 009136          167 VEGNKLT  173 (542)
Q Consensus       167 l~~~~~~  173 (542)
                      +++|++.
T Consensus       159 L~~N~~~  165 (220)
T 2v9t_B          159 LAQNPFI  165 (220)
T ss_dssp             CCSSCEE
T ss_pred             eCCCCcC
Confidence            6665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.69  E-value=1e-16  Score=154.56  Aligned_cols=170  Identities=25%  Similarity=0.284  Sum_probs=115.1

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhc-CCCCCcEEEcCCCCCCcch-Hhhh
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLR-NLPLLTVLNVSHNKLSELP-AAIG   88 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~-~~~~L~~L~l~~~~~~~l~-~~~~   88 (542)
                      +.+++++++++.+|..+..               .++.|++++|.+..++. .+. .+++|+.|++++|.+..++ .+|.
T Consensus        21 ~~l~c~~~~l~~iP~~~~~---------------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~   85 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPS---------------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV   85 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCT---------------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CEEEeCCCCcCccCccCCC---------------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc
Confidence            4677777777777776533               47777777777776653 354 6777777777777777664 3677


Q ss_pred             CCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccCCccc----ccCCCc
Q 009136           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDL----ADCSKM  162 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~----~~~~~L  162 (542)
                      .+++|++|+|++|.++.++. .|..+++|++|++++|++..+ +..+..+++|++|++++|.+..++...    ..+++|
T Consensus        86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            77777777777777776543 467777777777777777755 345667777777777777777666543    456777


Q ss_pred             cEEEccCCcccccchhhhhcccc--CcEEEcCCccc
Q 009136          163 SKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLL  196 (542)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~  196 (542)
                      +.|++++|.+..++...+..++.  ++.|++.+|.+
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            77777777777666655666554  35566666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.7e-16  Score=138.90  Aligned_cols=148  Identities=13%  Similarity=0.160  Sum_probs=70.8

Q ss_pred             CCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCcccc-CCcccccCCCccEEEcc
Q 009136           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITS-LPEDLADCSKMSKLDVE  168 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~  168 (542)
                      +++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..+..+++|++|+++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            344455555555444444 3444555555555555444332 44445555555555555543 33445555556666665


Q ss_pred             CCcccccchhhhhccccCcEEEcCCcc-cCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCc
Q 009136          169 GNKLTVLSNNLIASWTMLTELIASKNL-LNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA  241 (542)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~  241 (542)
                      +|.+.......+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            555554444444555555555555554 44443 3444444444444444444332 33344444444444443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=2e-16  Score=140.77  Aligned_cols=147  Identities=19%  Similarity=0.283  Sum_probs=102.2

Q ss_pred             ceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh--HhhcCCCCCcEEEcCCCCCCcchH-hhh
Q 009136           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK--EDLRNLPLLTVLNVSHNKLSELPA-AIG   88 (542)
Q Consensus        12 ~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~~~~l~~-~~~   88 (542)
                      +.++++++.++++|..+..               .+++|++++|.+..++  ..|..+++|++|++++|.++.++. +|.
T Consensus        14 ~~l~~s~n~l~~iP~~~~~---------------~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~   78 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQ---------------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE   78 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCT---------------TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CEeEeCCCCcccCccCCCC---------------CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC
Confidence            4677777777777776533               4677778777777663  346777777777777777776644 677


Q ss_pred             CCCCCcEEecCCCccccCCc-cccccCCccEEEcCCCcCCcC-CccccCCCCCCeEEccCCccccC-CcccccCCCccEE
Q 009136           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL  165 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L  165 (542)
                      .+++|++|++++|.++.++. .|..+++|++|++++|++..+ +..+..+++|++|++++|.+..+ +..+..+++|++|
T Consensus        79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            77777777777777776644 367777777777777777755 45566677777777777777655 4456666777777


Q ss_pred             EccCCccc
Q 009136          166 DVEGNKLT  173 (542)
Q Consensus       166 ~l~~~~~~  173 (542)
                      ++++|++.
T Consensus       159 ~L~~N~l~  166 (220)
T 2v70_A          159 NLLANPFN  166 (220)
T ss_dssp             ECCSCCEE
T ss_pred             EecCcCCc
Confidence            77666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.3e-16  Score=151.86  Aligned_cols=100  Identities=14%  Similarity=0.199  Sum_probs=82.2

Q ss_pred             cCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCc-EEEccCCCCcccCCCccCCCCCCceE
Q 009136          379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQVPSDGFKDIPMLQIL  456 (542)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~~~~~~~L~~L  456 (542)
                      +++|+++++.+|.++.++. +|.+|++|++|++.+| ++.++..+|.+|++|+ .+.+.+ .+..++..+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            6788888888888888776 5788888888888887 8888888888888888 888887 7788888888888888888


Q ss_pred             ecCCCcCCCCCCCCCCCCchhHHH
Q 009136          457 DLSYNIASLPENPPFSSLPHLQEL  480 (542)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~~L  480 (542)
                      ++++|.+..+...+|.+|++|+.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EeCCCccCccchhhhcCCcchhhh
Confidence            888888888887788877766543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.6e-16  Score=151.17  Aligned_cols=100  Identities=15%  Similarity=0.200  Sum_probs=81.9

Q ss_pred             ccccEEEecCCCCCCCCcc-ccccCCccEEECCCCcccccCh-hcccCccCc-EEEccCCcCCCCChhhhhCCCCCcEEE
Q 009136          357 VTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPP-ELSSCASLQ-TLILSRNKIKDWPDAILTSLSSLSCLK  433 (542)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L~  433 (542)
                      .++++++++++.+..++.. +..|++|+++++.++ ++.++. +|.+|++|+ .+++.+ .++.++..+|.+|++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            3444455554444444443 455889999999987 777775 689999999 999998 89999999999999999999


Q ss_pred             ccCCCCcccCCCccCCCCCCceEec
Q 009136          434 LDNNPLRQVPSDGFKDIPMLQILDL  458 (542)
Q Consensus       434 L~~n~i~~~~~~~~~~~~~L~~L~l  458 (542)
                      +.++.+..++..+|.+|++|+.+..
T Consensus       304 l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             eCCCccCccchhhhcCCcchhhhcc
Confidence            9999999999999999999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=3.7e-18  Score=173.28  Aligned_cols=193  Identities=18%  Similarity=0.163  Sum_probs=147.9

Q ss_pred             eeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCC-------------CC-cchHhhhCCCCCcEEe-cCCCccccC
Q 009136           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI  106 (542)
Q Consensus        42 ~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~-------------~~-~l~~~~~~l~~L~~L~-l~~~~~~~l  106 (542)
                      +.+++|+.|++++|.++.+|..+..+++|+.|+++++.             .. ..|..+..+++|+.|+ ++.+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            34678888888888888888888888888888876653             22 3455777778888887 555544332


Q ss_pred             Cc------cccc--cCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchh
Q 009136          107 PD------EIGS--ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN  178 (542)
Q Consensus       107 ~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  178 (542)
                      +.      .+..  ...|+.|++++|.++.+|. +..+++|++|++++|.+..+|..++.+++|+.|++++|.++.++  
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--  502 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--
Confidence            21      1111  1358889999988888876 88888999999999988888888888999999999999888876  


Q ss_pred             hhhccccCcEEEcCCcccCcc--ccccCCCCcccEEEccCCCCccCCCCC----cCCCCCcEEEc
Q 009136          179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI----SGCCSLAEFYM  237 (542)
Q Consensus       179 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~L~~l~l  237 (542)
                      .+..+++|+.|++++|.++.+  |..+..+++|+.|++++|.+...|...    ..+++|+.|++
T Consensus       503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            488889999999999998887  788888999999999999888776543    33788888754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=2.4e-18  Score=174.65  Aligned_cols=194  Identities=20%  Similarity=0.206  Sum_probs=161.2

Q ss_pred             hcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCc-------------cc-cCCccccccCCccEEE-cCCCcCCc
Q 009136           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNS-------------IM-KIPDEIGSATALVKFD-CSSNQLKE  128 (542)
Q Consensus        64 l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------~~-~l~~~~~~l~~L~~L~-l~~~~~~~  128 (542)
                      +..+++|+.|+++++.+..+|..+..+++|+.|+++++.             .. ..|..++.+++|+.|+ ++.+.+..
T Consensus       345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            367899999999999999999999999999999997764             12 3456678888899888 55554432


Q ss_pred             CCc------cccC--CCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc
Q 009136          129 LPS------SLGR--CLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (542)
Q Consensus       129 ~~~------~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (542)
                      ++.      .+..  ...|++|++++|.+..+|. +..+++|+.|++++|.++.++. .++.+++|+.|++++|.++.+|
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp  502 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc
Confidence            221      1111  1369999999999999986 9999999999999999998765 5999999999999999999998


Q ss_pred             cccCCCCcccEEEccCCCCccC--CCCCcCCCCCcEEEcCCCcCcccchh----ccCCCCccEEEc
Q 009136          201 ETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDL  260 (542)
Q Consensus       201 ~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~~~~~~L~~L~l  260 (542)
                       .+..+++|+.|++++|.++.+  |..+..+++|+.|++++|.+..+|..    +..+++|+.|++
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence             899999999999999999987  88999999999999999999977653    344789998864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.64  E-value=1.9e-14  Score=139.60  Aligned_cols=249  Identities=11%  Similarity=0.195  Sum_probs=147.1

Q ss_pred             CCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEE
Q 009136          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFY  236 (542)
Q Consensus       159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~  236 (542)
                      +..++.+.+.. .++.++..+|.++ +|+.+.+..+ ++.+. .+|.+ .+|+.+.+.+ .+..+ ...|.+|++|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            35555555543 3555555556653 5666666554 33333 23433 3466666654 34333 24566666666666


Q ss_pred             cCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCcccccccc
Q 009136          237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS  316 (542)
Q Consensus       237 l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~  316 (542)
                      +.++.+..++.......+|+.+.+..+ ++.+.                     ...|.++.+|+.+.+..+ +..++..
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~---------------------~~aF~~~~~L~~l~l~~~-l~~I~~~  243 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIG---------------------SQAFLKTSQLKTIEIPEN-VSTIGQE  243 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCTT-CCEEC---------------------TTTTTTCTTCCCEECCTT-CCEECTT
T ss_pred             cCCCcceEechhhEeecccCEEEeCCc-hheeh---------------------hhHhhCCCCCCEEecCCC-ccCcccc
Confidence            666666666554444556666665432 22221                     123556666666666553 4444433


Q ss_pred             ccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC-CccccccCCccEEECCCCccc--
Q 009136          317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQ--  393 (542)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--  393 (542)
                      +|..                                    ..++.+.+.+ .+..+ ...+..|++|+++.+.++.+.  
T Consensus       244 aF~~------------------------------------~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          244 AFRE------------------------------------SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD  286 (401)
T ss_dssp             TTTT------------------------------------CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred             cccc------------------------------------CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence            3322                                    2345555533 23333 234556777888887766554  


Q ss_pred             ---ccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCC
Q 009136          394 ---ELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP  469 (542)
Q Consensus       394 ---~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  469 (542)
                         .++. +|.+|++|+.+++. +.++.++..+|.+|++|+.+.|.. .+..+...+|.+| +|+.+++.+|....+...
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence               3443 67888888888887 457777777888888888888854 4777777778888 888888888877766666


Q ss_pred             CCCCCc
Q 009136          470 PFSSLP  475 (542)
Q Consensus       470 ~~~~~~  475 (542)
                      .|.+++
T Consensus       364 ~F~~~~  369 (401)
T 4fdw_A          364 VWYGFP  369 (401)
T ss_dssp             SCCCSC
T ss_pred             cccCCC
Confidence            666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=3.9e-16  Score=132.88  Aligned_cols=138  Identities=22%  Similarity=0.182  Sum_probs=114.7

Q ss_pred             cCCccEEECCCCccc--ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceE
Q 009136          379 AGEITKLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (542)
Q Consensus       379 ~~~L~~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  456 (542)
                      ++++++|++++|.++  .+|..+..+++|++|++++|.++++  ..+..+++|++|++++|++....+..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            468899999999888  7888788899999999999999887  557889999999999999888545546668999999


Q ss_pred             ecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCc----cccCCCCCCEEECCCCcC
Q 009136          457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPE----GFKNLTSLTELDLSDNNI  532 (542)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~----~l~~~~~L~~L~l~~~~l  532 (542)
                      ++++|.++.+..                     +..+..+++|+.|++++|.++.++.    .+..+++|+.|++++|++
T Consensus       101 ~Ls~N~l~~~~~---------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDIST---------------------LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGG---------------------GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCcchh---------------------HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            999998765321                     1345567899999999999998876    789999999999999999


Q ss_pred             CcCCCCC
Q 009136          533 SALPPEL  539 (542)
Q Consensus       533 ~~lp~~~  539 (542)
                      ..+|+.-
T Consensus       160 ~~~~~~~  166 (168)
T 2ell_A          160 QEAPDSD  166 (168)
T ss_dssp             CBCCSSS
T ss_pred             hhccccc
Confidence            9998753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=3.5e-15  Score=144.77  Aligned_cols=261  Identities=11%  Similarity=0.155  Sum_probs=181.0

Q ss_pred             cCCCCCcEEEcCCCcCcccc-hhccCCCCccEEEcCCCcCcccchhhhcc-cccEEEccCCCCCCCC-hhhcCcCCCcEE
Q 009136          227 SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLP-PEIGKMTTLRKL  303 (542)
Q Consensus       227 ~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~-~L~~l~l~~~~l~~l~-~~l~~~~~L~~L  303 (542)
                      ..+..++.+.+.+. ++.++ .+|.+ .+|+.+.+..+ ++.+....+.. +|+.+.+.. .+..+. ..|.+|.+|+.+
T Consensus       110 ~~~~~l~~i~ip~~-i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             EECSSCSEEECCTT-CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             EecCCccEEEECCc-cCEehHhhccc-CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCee
Confidence            34567788888764 44443 34555 48999999776 66665554433 488888876 555554 457889999999


Q ss_pred             EcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCc-cccccCCc
Q 009136          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEI  382 (542)
Q Consensus       304 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~L  382 (542)
                      ++.++.+..++..+|..                                    ..++++.+.++ +..++. .+..+++|
T Consensus       186 ~l~~n~l~~I~~~aF~~------------------------------------~~L~~l~lp~~-l~~I~~~aF~~~~~L  228 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVY------------------------------------AGIEEVLLPVT-LKEIGSQAFLKTSQL  228 (401)
T ss_dssp             ECTTSCCSEECTTTTTT------------------------------------CCCSEEECCTT-CCEECTTTTTTCTTC
T ss_pred             ecCCCcceEechhhEee------------------------------------cccCEEEeCCc-hheehhhHhhCCCCC
Confidence            99988888777655532                                    35667777643 444443 45567788


Q ss_pred             cEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc-----ccCCCccCCCCCCceE
Q 009136          383 TKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPMLQIL  456 (542)
Q Consensus       383 ~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~-----~~~~~~~~~~~~L~~L  456 (542)
                      +.+++.++ ++.++. +|.+ .+|+.+.+ .+.++.++..+|.+|++|+.+.+.++.+.     .+...+|.+|++|+.+
T Consensus       229 ~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l  305 (401)
T 4fdw_A          229 KTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF  305 (401)
T ss_dssp             CCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred             CEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence            88888763 566554 4555 67888888 45677777788888888888888776654     5777778888888888


Q ss_pred             ecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchh-hhcCCCCCEEeCCCCcccccC-ccccCCC-CCCEEECCCCcCC
Q 009136          457 DLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP-EGFKNLT-SLTELDLSDNNIS  533 (542)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~l~-~~l~~~~-~L~~L~l~~~~l~  533 (542)
                      ++. +.+..+...+|.+|++|+.+.+..++..++.. +.++ +|+.+++.+|.+..++ ..|..++ +++.|.+..+.+.
T Consensus       306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          306 EIP-ESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CCC-TTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EeC-CceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            887 44777777788888888888775556666443 5666 8888888888776663 4466664 6777777666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.62  E-value=3.6e-14  Score=138.52  Aligned_cols=130  Identities=14%  Similarity=0.254  Sum_probs=85.4

Q ss_pred             hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchh
Q 009136          398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (542)
Q Consensus       398 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L  477 (542)
                      +|.+|.+|+.+.+... +..++..+|.++++|+.+.+. +.+..++..+|.+|.+|+.+++..+ ++.+...+|.+|.+|
T Consensus       260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            5677777777777543 345666667777777777775 4566777777777778888777643 666666777777777


Q ss_pred             HHHHHhhccccCch-hhhcCCCCCEEeCCCCcccccCccccCCCCCCEEECCCCcC
Q 009136          478 QELYLRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI  532 (542)
Q Consensus       478 ~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l  532 (542)
                      +++.+...+..+.. .+.+|++|+.+++.++....  ..+..+.+|+.+.+..+.+
T Consensus       337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          337 ERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC----------
T ss_pred             CEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence            77777555666654 46788999999999875432  3577888999998877654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=6.7e-16  Score=161.80  Aligned_cols=196  Identities=19%  Similarity=0.234  Sum_probs=117.0

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhh
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~   88 (542)
                      ..++.|++.++.+...+..+.......        --++..+++..+.+...++.+..+++|+.|+|++|.+..+|..+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls--------~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLS--------QYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF  244 (727)
T ss_dssp             ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccC--------cccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence            346778888888887776665531110        012333334445555556788999999999999999999988888


Q ss_pred             CCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  168 (542)
                      .+++|++|+|++|.++.+|..+..+++|++|+|++|.++.+|..++.+++|++|++++|.+..+|..+..+++|++|+++
T Consensus       245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred             CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccchhhhhcccc-CcEEEcCCcccCccccccCCCCcccEEEccCC
Q 009136          169 GNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSRLIRLDLHQN  217 (542)
Q Consensus       169 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  217 (542)
                      +|.+....+..+..... ...+++++|.+...     ....|+.|++..+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~-----~p~~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP-----LPHERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCc-----CccccceeEeecc
Confidence            99998766655544322 22356777766431     1234556666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3e-15  Score=127.35  Aligned_cols=130  Identities=18%  Similarity=0.181  Sum_probs=51.6

Q ss_pred             CCcEEEcCCCCCC--cchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCc-CCccccCCCCCCeEEcc
Q 009136           69 LLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKAS  145 (542)
Q Consensus        69 ~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~  145 (542)
                      +|++|++++|.+.  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|++.. +|..+..+++|++|+++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            3444444444333  3333333334444444444443333 333334444444444444433 22233334444444444


Q ss_pred             CCccccCC--cccccCCCccEEEccCCcccccch---hhhhccccCcEEEcCCcccCcc
Q 009136          146 NNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGM  199 (542)
Q Consensus       146 ~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~  199 (542)
                      +|.+..++  ..+..+++|++|++++|++..++.   ..+..+++|++|++++|....+
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            44443332  233444444444444444443333   2334444444444444444333

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=2.1e-14  Score=124.63  Aligned_cols=128  Identities=27%  Similarity=0.395  Sum_probs=105.7

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~  438 (542)
                      .+.++++++.+..+|..+  .+++++|++++|.++.+|..+..+++|++|++++|.+++++...|.++++|++|+|++|+
T Consensus        12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            367888888888888765  468899999999888888888888999999999999998888888889999999999999


Q ss_pred             CcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136          439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       439 i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  510 (542)
                      ++.+....|.++++|+.|++++|.++.+.+..|.                      .+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~----------------------~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN----------------------DLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT----------------------TCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh----------------------cCccccEEEeCCCCee
Confidence            8888887888889999999998888765544443                      4478888899988765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=1.3e-14  Score=126.02  Aligned_cols=128  Identities=23%  Similarity=0.313  Sum_probs=100.5

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh--hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      -+.++++++.++.+|..+.  .++++|++++|.++.++.  .+..+++|++|++++|.++++.+..|.++++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            3678888888888887653  388888888888887765  377888888888888888888777788888888888888


Q ss_pred             CCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  510 (542)
                      |+++.+....|.++++|++|++++|+++...+..+                      ..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------------~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----------------------EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS----------------------TTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----------------------hcCCCCCEEEeCCCCcc
Confidence            88888877778888888888888888776544433                      34477888888888776

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=2.5e-14  Score=124.17  Aligned_cols=111  Identities=32%  Similarity=0.451  Sum_probs=103.4

Q ss_pred             ccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEE
Q 009136          355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK  433 (542)
Q Consensus       355 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  433 (542)
                      .+..+++++++++.+..+|..+..+++|++|++++|.++.++. .|.++++|++|++++|.++.++...|.++++|++|+
T Consensus        29 ~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           29 IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            4568999999999999999889999999999999999999875 689999999999999999999999999999999999


Q ss_pred             ccCCCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136          434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (542)
Q Consensus       434 L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  465 (542)
                      |++|++..++...|..+++|+.|++++|.+..
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999999998889999999999999998753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.57  E-value=8e-14  Score=136.04  Aligned_cols=130  Identities=15%  Similarity=0.243  Sum_probs=79.2

Q ss_pred             cccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCc
Q 009136          375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (542)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~  454 (542)
                      .+..|..|+.+.+.+....--..+|.+|++|+.+.+. +.++.++..+|.+|.+|+.+.|.. .++.+...+|.+|.+|+
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCC
Confidence            4455677777777654332223356777777777775 456667777777777888877764 36667777777778888


Q ss_pred             eEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCc
Q 009136          455 ILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS  508 (542)
Q Consensus       455 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~  508 (542)
                      ++.+..+ ++.+...+|.+|++|+++.+......+ ..+..+.+|+.+.+..+.
T Consensus       338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-HTCBCCCCC---------
T ss_pred             EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-hhhhccCCCCEEEeCCCC
Confidence            7777543 666666777777777777663222222 345566777777776553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=4.2e-15  Score=123.64  Aligned_cols=122  Identities=23%  Similarity=0.297  Sum_probs=73.4

Q ss_pred             cCCcEEEcCCCccc--chhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCcccc-CCccccccCCccEEEc
Q 009136           45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDC  121 (542)
Q Consensus        45 ~~L~~L~l~~~~~~--~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l  121 (542)
                      +++++|++++|.+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            56777777777666  5666666666677777766666655 556666666666666666665 5555555666666666


Q ss_pred             CCCcCCcCC--ccccCCCCCCeEEccCCccccCCc----ccccCCCccEEEc
Q 009136          122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDV  167 (542)
Q Consensus       122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~l  167 (542)
                      ++|.++.++  ..+..+++|++|++++|.+..++.    .+..+++|+.|++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            666665543  445555555555555555554443    3444555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=6.4e-14  Score=120.20  Aligned_cols=103  Identities=30%  Similarity=0.515  Sum_probs=46.4

Q ss_pred             cEEEecCCCCCCCCccccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCC
Q 009136          360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (542)
Q Consensus       360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~  438 (542)
                      +.+++.++.+..+|..+  .+++++|++++|.++.++. .+..+++|++|++++|.++.++...+..+++|++|++++|.
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            44444444444444322  2344444444444444433 23444444444444444444444444444444444444444


Q ss_pred             CcccCCCccCCCCCCceEecCCCcCC
Q 009136          439 LRQVPSDGFKDIPMLQILDLSYNIAS  464 (542)
Q Consensus       439 i~~~~~~~~~~~~~L~~L~l~~n~~~  464 (542)
                      ++.++...+..+++|++|++++|.++
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccccCHHHhhCCcccCEEECcCCcce
Confidence            44444433444444444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=5e-15  Score=126.92  Aligned_cols=134  Identities=22%  Similarity=0.214  Sum_probs=95.6

Q ss_pred             ceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCcc-ccccCCccE
Q 009136           40 KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVK  118 (542)
Q Consensus        40 ~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~  118 (542)
                      .+.++++|++|++++|.+..++......++|++|++++|.+..+ ..+..+++|++|++++|.++.+|.. +..+++|++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            34557788888888888877754333344888888888888776 5677778888888888887777654 377788888


Q ss_pred             EEcCCCcCCcCCc--cccCCCCCCeEEccCCccccCCcc----cccCCCccEEEccCCcccc
Q 009136          119 FDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLTV  174 (542)
Q Consensus       119 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~----~~~~~~L~~L~l~~~~~~~  174 (542)
                      |++++|++..++.  .+..+++|++|++++|.+..++..    +..+++|+.|+++++...+
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            8888887777665  666777777777777777766654    6666777777766665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=5.6e-15  Score=126.60  Aligned_cols=135  Identities=18%  Similarity=0.160  Sum_probs=92.8

Q ss_pred             ccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCce
Q 009136          376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (542)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~  455 (542)
                      +..+++|++|++++|.++.++......++|++|++++|.++++  ..+..+++|++|++++|+++.++...+..+++|++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            3446677777777777777754333334777888887777776  34677777888888887777776665577777888


Q ss_pred             EecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccccCcc----ccCCCCCCEEECCCCc
Q 009136          456 LDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDNN  531 (542)
Q Consensus       456 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l~~~----l~~~~~L~~L~l~~~~  531 (542)
                      |++++|.+..+..                     ...+..+++|+.|++++|.++.+|..    +..+++|+.|++++|+
T Consensus        93 L~L~~N~i~~~~~---------------------~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           93 LILTNNSLVELGD---------------------LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECCSCCCCCGGG---------------------GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EECCCCcCCcchh---------------------hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            8887776643211                     01345567788888888887777664    7778888888888776


Q ss_pred             CC
Q 009136          532 IS  533 (542)
Q Consensus       532 l~  533 (542)
                      +.
T Consensus       152 ~~  153 (176)
T 1a9n_A          152 LK  153 (176)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=4e-14  Score=122.99  Aligned_cols=111  Identities=27%  Similarity=0.416  Sum_probs=101.3

Q ss_pred             ccccccEEEecCCCCCCCCcc--ccccCCccEEECCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcE
Q 009136          355 LSVTSKELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC  431 (542)
Q Consensus       355 ~~~~l~~l~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  431 (542)
                      .+..+++++++++.+..++..  +..+++|++|++++|.++.+ |..|..+++|++|++++|.+++++...|.++++|++
T Consensus        27 ~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           27 IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            345889999999999988764  77899999999999999987 567999999999999999999999888999999999


Q ss_pred             EEccCCCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136          432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (542)
Q Consensus       432 L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  465 (542)
                      |++++|+++.+.+..+..+++|++|++++|.+..
T Consensus       107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             EECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            9999999999888889999999999999998864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=1.3e-14  Score=120.64  Aligned_cols=125  Identities=22%  Similarity=0.265  Sum_probs=86.8

Q ss_pred             CCCCcEEEcCCCCCC--cchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCc-CCccccCCCCCCeEE
Q 009136           67 LPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFK  143 (542)
Q Consensus        67 ~~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~  143 (542)
                      .++|+.|++++|.+.  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            467778888887777  6666667777777777777777766 567777777777777777775 555555677777777


Q ss_pred             ccCCccccCC--cccccCCCccEEEccCCcccccch---hhhhccccCcEEEcC
Q 009136          144 ASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIAS  192 (542)
Q Consensus       144 l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  192 (542)
                      +++|.+..++  ..+..+++|++|++++|.++.+..   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777776543  556667777777777777666554   446666666666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=4.6e-13  Score=114.78  Aligned_cols=127  Identities=28%  Similarity=0.400  Sum_probs=73.1

Q ss_pred             ccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (542)
Q Consensus       382 L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  461 (542)
                      .+.+++++++++.+|..+  .++|++|++++|.+++++...+..+++|++|++++|.++.++...|..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            355556655555555432  245666666666666655555556666666666666666555555555666666666666


Q ss_pred             cCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCccc
Q 009136          462 IASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       462 ~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~  510 (542)
                      .++.+.+..+..+++|+.|++ .+.+..++.. +..+++|+.|++++|.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            665555555555666666666 4555555544 345566666666666544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.47  E-value=1.6e-14  Score=151.46  Aligned_cols=190  Identities=21%  Similarity=0.176  Sum_probs=111.3

Q ss_pred             cCCcEEEcCCCcccchhHhhcCCCCCcEEEcC-----CCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEE
Q 009136           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVS-----HNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF  119 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~-----~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L  119 (542)
                      ++++.|++.++.+...+..+-....|+.+.+.     .+.+...+..+..+.+|+.|+|++|.+..+|..+..+++|++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L  252 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL  252 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence            56888999888887766554444444444333     3334444667888999999999999999998888899999999


Q ss_pred             EcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCc-
Q 009136          120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-  198 (542)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-  198 (542)
                      +|++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.. 
T Consensus       253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSH
T ss_pred             EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCC
Confidence            99999999999889999999999999999999998899999999999999999888766 8889999999999999875 


Q ss_pred             cccccCCCC-cccEEEccCCCCccCCCCCcCCCCCcEEEcCCC
Q 009136          199 MPETIGSLS-RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (542)
Q Consensus       199 ~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~  240 (542)
                      +|..+.... ....+++.+|.+...     ....++.++++.+
T Consensus       332 ~p~~~~~~~~~~~~l~l~~N~l~~~-----~p~~l~~l~l~~n  369 (727)
T 4b8c_D          332 FLKILTEKSVTGLIFYLRDNRPEIP-----LPHERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC---------
T ss_pred             ChHHHhhcchhhhHHhhccCcccCc-----CccccceeEeecc
Confidence            344433221 122356777766522     1234555666655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=5.3e-15  Score=129.45  Aligned_cols=127  Identities=29%  Similarity=0.328  Sum_probs=82.1

Q ss_pred             CCcEEEcCCC--cccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        46 ~L~~L~l~~~--~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      .++...+.+.  .++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            3455555443  34455666777777777777777766666 66667777777777777776666666667777777777


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCc--ccccCCCccEEEccCCcccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTV  174 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~  174 (542)
                      |++..++ .+..+++|++|++++|.+..++.  .+..+++|++|++++|++..
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            7666654 45666667777776666665443  45666666666666666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.42  E-value=1.5e-11  Score=119.35  Aligned_cols=102  Identities=19%  Similarity=0.292  Sum_probs=53.4

Q ss_pred             ccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceE
Q 009136          378 EAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (542)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L  456 (542)
                      .+..|+.+.+..+ ++.+.. +|.+|.+|+.+.+.. .++.++..+|.+|++|+.+.+.++.+..++..+|.+|.+|+.+
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            3455555555443 333332 355555555555543 3444555555555666666665555555555555556666666


Q ss_pred             ecCCCcCCCCCCCCCCCCchhHHHHH
Q 009136          457 DLSYNIASLPENPPFSSLPHLQELYL  482 (542)
Q Consensus       457 ~l~~n~~~~~~~~~~~~~~~L~~L~l  482 (542)
                      .+..+ ++.+...+|.+|.+|+++.+
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            55432 44444555555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.40  E-value=5.8e-11  Score=115.26  Aligned_cols=98  Identities=16%  Similarity=0.319  Sum_probs=79.6

Q ss_pred             cccccCCccEEECCCCcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCC
Q 009136          375 EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML  453 (542)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L  453 (542)
                      .+..+.+++.+.+.. .+..++. +|.+|++|+.+.+.++.++.++..+|.+|.+|+.+.|.. .+..++..+|.+|.+|
T Consensus       258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L  335 (379)
T 4h09_A          258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKAL  335 (379)
T ss_dssp             TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTC
T ss_pred             ccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCC
Confidence            344577888888865 3555554 688999999999998889999999999999999999974 4778888899999999


Q ss_pred             ceEecCCCcCCCCCCCCCCCCc
Q 009136          454 QILDLSYNIASLPENPPFSSLP  475 (542)
Q Consensus       454 ~~L~l~~n~~~~~~~~~~~~~~  475 (542)
                      +.+.+..+ ++.+...+|.+|+
T Consensus       336 ~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          336 STISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCCCCCTT-CCEECTTTTTTSS
T ss_pred             CEEEECCc-cCEEchhHhhCCC
Confidence            99999654 7777777888775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.38  E-value=1.7e-14  Score=126.20  Aligned_cols=117  Identities=23%  Similarity=0.281  Sum_probs=81.5

Q ss_pred             CCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCccccc
Q 009136           79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD  158 (542)
Q Consensus        79 ~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~  158 (542)
                      .++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.+..++ .+..
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            44556667888888888888888877777 777788888888888877777766666677777777777776654 4566


Q ss_pred             CCCccEEEccCCcccccch-hhhhccccCcEEEcCCcccC
Q 009136          159 CSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN  197 (542)
Q Consensus       159 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  197 (542)
                      +++|++|++++|.+..++. ..+..+++|++|++++|.+.
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            6667777776666665443 34556666666666666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=3.5e-12  Score=108.13  Aligned_cols=106  Identities=25%  Similarity=0.396  Sum_probs=96.7

Q ss_pred             cccEEEecCCCCCCCCccccccCCccEEECCCCccccc-ChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      ..++++++++.++.+|..+  .+++++|++++|.++.+ |..|..+++|++|++++|++++++...|..+++|++|+|++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4578999999999999876  48999999999999998 45689999999999999999999999899999999999999


Q ss_pred             CCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136          437 NPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (542)
Q Consensus       437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  465 (542)
                      |++..++...|..+++|++|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99999988889999999999999998863

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=1.1e-11  Score=105.11  Aligned_cols=106  Identities=27%  Similarity=0.358  Sum_probs=91.3

Q ss_pred             CccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCC
Q 009136          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (542)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  460 (542)
                      +.+.++++++.++.+|..+  .++|++|++++|.++++++..|.++++|++|+|++|+++.++...|..+++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4689999999999999765  38999999999999999998899999999999999999999988889999999999999


Q ss_pred             CcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136          461 NIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       461 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  510 (542)
                      |+++.+.+..|..+                      ++|+.|++++|++.
T Consensus        88 N~l~~~~~~~~~~l----------------------~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNL----------------------KSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTC----------------------TTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCC----------------------CCCCEEEeCCCCCC
Confidence            99987766555544                      56677777777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=7.6e-12  Score=106.41  Aligned_cols=105  Identities=24%  Similarity=0.391  Sum_probs=95.4

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCCcccccC-hhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n  437 (542)
                      .+.++++++.+..+|..+.  ++|++|++++|.++.++ ..|..+++|++|++++|++++++...|..+++|++|+|++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4689999999999998764  89999999999999874 57889999999999999999999988899999999999999


Q ss_pred             CCcccCCCccCCCCCCceEecCCCcCCC
Q 009136          438 PLRQVPSDGFKDIPMLQILDLSYNIASL  465 (542)
Q Consensus       438 ~i~~~~~~~~~~~~~L~~L~l~~n~~~~  465 (542)
                      ++..++...|..+++|+.|++++|.+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9999988889999999999999998863

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=1.1e-11  Score=105.41  Aligned_cols=108  Identities=22%  Similarity=0.323  Sum_probs=91.0

Q ss_pred             CccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCC
Q 009136          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (542)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  460 (542)
                      .-+.++++++.++.+|..+.  ++|++|++++|.++++++..|.++++|++|+|++|+++.++...|..+++|++|++++
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            34789999999999998653  8999999999999999988899999999999999999999888889999999999999


Q ss_pred             CcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccccc
Q 009136          461 NIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSI  512 (542)
Q Consensus       461 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~l  512 (542)
                      |+++.+.+..|..+                      ++|+.|++++|.+...
T Consensus        91 N~l~~l~~~~~~~l----------------------~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNL----------------------KSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTC----------------------TTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccc----------------------cCCCEEEeCCCCcccc
Confidence            99987655555544                      5666666666665533

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=1.8e-12  Score=124.41  Aligned_cols=153  Identities=17%  Similarity=0.139  Sum_probs=84.4

Q ss_pred             cCCcEEEcCCCcccc-----hhHhhcCC-CCCcEEEcCCCCCCcc--hHhhhCCCCCcEEecCCCccccC-----Cccc-
Q 009136           45 VDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFNSIMKI-----PDEI-  110 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~-----l~~~l~~~-~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~~~~~~l-----~~~~-  110 (542)
                      ++|++|++++|.+..     +...+... ++|++|++++|.+...  ......+++|++|+|++|.++..     ...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            356666666666652     22333322 5666666666666521  11222344566666666665521     1112 


Q ss_pred             cccCCccEEEcCCCcCCc-----CCccccCCCCCCeEEccCCcccc-----CCcccccCCCccEEEccCCcccccchhh-
Q 009136          111 GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL-  179 (542)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~-  179 (542)
                      ...++|++|++++|.++.     ++..+...++|++|++++|.+..     +...+...++|++|++++|.++...... 
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            234566667776666652     33344556667777777766652     2344555667777777777766544332 


Q ss_pred             ---hhccccCcEEEcCCcccC
Q 009136          180 ---IASWTMLTELIASKNLLN  197 (542)
Q Consensus       180 ---~~~~~~L~~L~l~~~~~~  197 (542)
                         +...+.|++|++++|.++
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence               334466777777777664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=7.4e-13  Score=127.15  Aligned_cols=164  Identities=19%  Similarity=0.212  Sum_probs=117.5

Q ss_pred             cccccccEEEecCCCCCCCC-----ccccc-cCCccEEECCCCcccc--cChhcccCccCcEEEccCCcCCCCChhhhh-
Q 009136          354 RLSVTSKELSLEGMNLSAIP-----SEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILT-  424 (542)
Q Consensus       354 ~~~~~l~~l~l~~~~~~~~~-----~~~~~-~~~L~~L~l~~~~l~~--l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-  424 (542)
                      .....+++++++++.++...     ..+.. +++|++|++++|.++.  +......+++|++|++++|.+++.....+. 
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            34467889999999887422     22222 3689999999998865  222234567899999999999876655543 


Q ss_pred             ----CCCCCcEEEccCCCCcccCCC----ccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcC
Q 009136          425 ----SLSSLSCLKLDNNPLRQVPSD----GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRL  496 (542)
Q Consensus       425 ----~l~~L~~L~L~~n~i~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~  496 (542)
                          ..++|++|+|++|.+++....    ++..+++|++|++++|.+....                  ...++..+..+
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g------------------~~~L~~~L~~~  210 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG------------------LELLAAQLDRN  210 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH------------------HHHHHHHGGGC
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH------------------HHHHHHHHhcC
Confidence                468899999999998763322    2366889999999999775321                  12334556667


Q ss_pred             CCCCEEeCCCCcccc-----cCccccCCCCCCEEECCCCcCCcC
Q 009136          497 QQLRILDLSQNSLQS-----IPEGFKNLTSLTELDLSDNNISAL  535 (542)
Q Consensus       497 ~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~l~~l  535 (542)
                      ++|+.|++++|.++.     +...+..+++|++|+|++|+|++.
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            889999999998773     455567788899999999988753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=7.2e-10  Score=106.11  Aligned_cols=104  Identities=21%  Similarity=0.209  Sum_probs=94.2

Q ss_pred             cEEEecCC-CCCCCCccccccCCccEEECCC-CcccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          360 KELSLEGM-NLSAIPSEIWEAGEITKLDLSR-NSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       360 ~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      ..+++++. .+..+|. +...++|++|++++ |.++.++. .|.++++|++|+|++|.++++++..|..+++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            45788888 8999999 88899999999996 99999884 689999999999999999999999999999999999999


Q ss_pred             CCCcccCCCccCCCCCCceEecCCCcCCC
Q 009136          437 NPLRQVPSDGFKDIPMLQILDLSYNIASL  465 (542)
Q Consensus       437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~~  465 (542)
                      |++..++...|..++ |+.|++.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999999888777666 9999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.00  E-value=1.2e-09  Score=104.51  Aligned_cols=98  Identities=28%  Similarity=0.358  Sum_probs=84.9

Q ss_pred             cEEECCCC-cccccChhcccCccCcEEEccC-CcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCC
Q 009136          383 TKLDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (542)
Q Consensus       383 ~~L~l~~~-~l~~l~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~  460 (542)
                      ..++++++ .++.+|. +..+++|++|+|++ |.++.++...|.++++|++|+|++|.++.+....|.++++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            45688888 8999999 99999999999996 999999999999999999999999999999988899999999999999


Q ss_pred             CcCCCCCCCCCCCCchhHHHHH
Q 009136          461 NIASLPENPPFSSLPHLQELYL  482 (542)
Q Consensus       461 n~~~~~~~~~~~~~~~L~~L~l  482 (542)
                      |+++.+.+..|..++ |+.|++
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CccceeCHHHcccCC-ceEEEe
Confidence            999877665555443 444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.79  E-value=1.1e-08  Score=97.28  Aligned_cols=177  Identities=13%  Similarity=0.144  Sum_probs=82.3

Q ss_pred             cCCcEEEcCCCccc---------chhHhhcCCCCCcEEEcCCCCCC----------cchHhhhCCCCCcEEecCCCcccc
Q 009136           45 VDLQKLILAHNNIE---------KLKEDLRNLPLLTVLNVSHNKLS----------ELPAAIGELHMLKSLDVSFNSIMK  105 (542)
Q Consensus        45 ~~L~~L~l~~~~~~---------~l~~~l~~~~~L~~L~l~~~~~~----------~l~~~~~~l~~L~~L~l~~~~~~~  105 (542)
                      ..++.|.+......         .+.++...+++|+.|.+.+....          .+...+..+++|+.|+++++.-..
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            34666666543322         12333455667777776543221          234445566666666666552122


Q ss_pred             CCccccccCCccEEEcCCCcCCcC-Cccc--cCCCCCCeEEccCC--c------cccCCccc--ccCCCccEEEccCCcc
Q 009136          106 IPDEIGSATALVKFDCSSNQLKEL-PSSL--GRCLNLSDFKASNN--C------ITSLPEDL--ADCSKMSKLDVEGNKL  172 (542)
Q Consensus       106 l~~~~~~l~~L~~L~l~~~~~~~~-~~~~--~~~~~L~~L~l~~~--~------~~~l~~~~--~~~~~L~~L~l~~~~~  172 (542)
                      ++. + ..++|++|++..+.+..- ...+  ..+++|++|+++.+  .      +..+...+  ..+++|++|++.+|.+
T Consensus       187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            322 2 255566666655544311 1111  14555555555321  0      11111111  1234444444444444


Q ss_pred             cccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCcc-----CCCCCcCCCCCcEEEcCCCcCc
Q 009136          173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       173 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~  243 (542)
                      .......+.                   + ...++.|+.|+++.|.+..     ++..+..+++|+.|++++|.++
T Consensus       265 ~~~~~~~la-------------------~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          265 QNVVVEMFL-------------------E-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHHHH-------------------H-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             chHHHHHHH-------------------h-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            321111111                   0 1235666777776666552     2333455677777777777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.77  E-value=4e-09  Score=90.44  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=86.7

Q ss_pred             ecCCcEEEcCCC-ccc-----chhHhhcCCCCCcEEEcCCCCCCc-----chHhhhCCCCCcEEecCCCcccc-----CC
Q 009136           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IP  107 (542)
Q Consensus        44 ~~~L~~L~l~~~-~~~-----~l~~~l~~~~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~-----l~  107 (542)
                      .++|++|++++| .+.     .+.+.+...++|++|++++|.+..     +...+...++|++|+|++|.+..     +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            688999999998 776     466778888999999999999873     45567778899999999998873     55


Q ss_pred             ccccccCCccEEEc--CCCcCCc-----CCccccCCCCCCeEEccCCccc
Q 009136          108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT  150 (542)
Q Consensus       108 ~~~~~l~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  150 (542)
                      ..+...+.|++|++  ++|.+..     +...+...++|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            66778889999999  7888872     4456667789999999998775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=9.8e-09  Score=87.98  Aligned_cols=117  Identities=14%  Similarity=0.142  Sum_probs=96.1

Q ss_pred             chhHhhcCCCCCcEEEcCCC-CCCc-----chHhhhCCCCCcEEecCCCccc-----cCCccccccCCccEEEcCCCcCC
Q 009136           59 KLKEDLRNLPLLTVLNVSHN-KLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK  127 (542)
Q Consensus        59 ~l~~~l~~~~~L~~L~l~~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~  127 (542)
                      .+...+...+.|++|++++| .+..     +...+...++|++|+|++|.+.     .+...+...++|++|++++|.+.
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            45677889999999999999 8873     4557788899999999999887     34555677789999999999988


Q ss_pred             c-----CCccccCCCCCCeEEc--cCCcccc-----CCcccccCCCccEEEccCCccccc
Q 009136          128 E-----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLTVL  175 (542)
Q Consensus       128 ~-----~~~~~~~~~~L~~L~l--~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~  175 (542)
                      .     +...+...+.|++|++  ++|.+..     +...+...++|++|++++|.+...
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence            3     4567788889999999  8888873     455677789999999999987643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.71  E-value=3.4e-09  Score=100.73  Aligned_cols=155  Identities=15%  Similarity=0.139  Sum_probs=90.1

Q ss_pred             ccccEEEecCCCCC----------CCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhh--
Q 009136          357 VTSKELSLEGMNLS----------AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT--  424 (542)
Q Consensus       357 ~~l~~l~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~--  424 (542)
                      ++|+.|.+.+....          .+...+..+|+|++|.++++.-..++. + .+++|++|++..|.++......+.  
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence            46777777654321          233344556888888887773223443 3 378888888888877654444444  


Q ss_pred             CCCCCcEEEccCC--C------CcccCCCcc--CCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhh
Q 009136          425 SLSSLSCLKLDNN--P------LRQVPSDGF--KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDIL  494 (542)
Q Consensus       425 ~l~~L~~L~L~~n--~------i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~  494 (542)
                      .+|+|++|+|+.+  .      +..+.. .+  ..+++|+.|++++|.+.......+.                   ...
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la-------------------~a~  276 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEMFL-------------------ESD  276 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHHHH-------------------HCS
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHHHH-------------------hCc
Confidence            6788888887531  1      111111 12  2478888888887765421100000                   001


Q ss_pred             cCCCCCEEeCCCCcccc-----cCccccCCCCCCEEECCCCcCC
Q 009136          495 RLQQLRILDLSQNSLQS-----IPEGFKNLTSLTELDLSDNNIS  533 (542)
Q Consensus       495 ~~~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~l~  533 (542)
                      .+++|+.|+++.|.++.     ++.++.++++|+.|++++|.|+
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            34677777777776653     3444556677777777777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=1.4e-07  Score=78.34  Aligned_cols=84  Identities=15%  Similarity=0.095  Sum_probs=65.9

Q ss_pred             cCCccEEECCCCcccccC-hhcccCccCcEEEccCC-cCCCCChhhhhCC----CCCcEEEccCCC-CcccCCCccCCCC
Q 009136          379 AGEITKLDLSRNSIQELP-PELSSCASLQTLILSRN-KIKDWPDAILTSL----SSLSCLKLDNNP-LRQVPSDGFKDIP  451 (542)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~-~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~l----~~L~~L~L~~n~-i~~~~~~~~~~~~  451 (542)
                      ...|++|++++|.+++.. ..+.+|++|++|++++| .+++.....+..+    ++|++|+|++|. +++....++..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            457899999998876521 23578999999999998 5888777777774    579999999986 7775555577889


Q ss_pred             CCceEecCCCc
Q 009136          452 MLQILDLSYNI  462 (542)
Q Consensus       452 ~L~~L~l~~n~  462 (542)
                      +|++|++++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999884

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.19  E-value=2.3e-07  Score=77.06  Aligned_cols=95  Identities=11%  Similarity=0.045  Sum_probs=70.7

Q ss_pred             ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCC-CcccCCCccCC----CCCCceEecCCCc-CCCCC
Q 009136          394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKD----IPMLQILDLSYNI-ASLPE  467 (542)
Q Consensus       394 ~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~----~~~L~~L~l~~n~-~~~~~  467 (542)
                      .+|.....-..|++||+++|.+++.....+.++++|++|+|++|. +++.....+..    +++|++|++++|. +++.+
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            355543345679999999999999888889999999999999996 77654444554    3589999999984 54321


Q ss_pred             CCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCc-cc
Q 009136          468 NPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNS-LQ  510 (542)
Q Consensus       468 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~-l~  510 (542)
                                            -..+..+++|++|++++|. ++
T Consensus       132 ----------------------l~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          132 ----------------------IIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             ----------------------HHHGGGCTTCCEEEEESCTTCC
T ss_pred             ----------------------HHHHhcCCCCCEEECCCCCCCC
Confidence                                  1123457899999999995 55

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.00  E-value=2.9e-06  Score=76.26  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=40.7

Q ss_pred             hCCCCCcEEecCCCccccCC---ccccccCCccEEEcCCCcCCcCCccccCCC--CCCeEEccCCcccc-CC-------c
Q 009136           88 GELHMLKSLDVSFNSIMKIP---DEIGSATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITS-LP-------E  154 (542)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-l~-------~  154 (542)
                      .++++|++|+|++|.++.++   ..+..+++|+.|+|++|++..+. .+..+.  +|++|++++|.+.. ++       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            34555555555555555432   33445566666666666555441 222222  66666666666542 22       1


Q ss_pred             ccccCCCccEEE
Q 009136          155 DLADCSKMSKLD  166 (542)
Q Consensus       155 ~~~~~~~L~~L~  166 (542)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245567777665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.97  E-value=5.2e-06  Score=70.33  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=75.5

Q ss_pred             ecCCcEEEcCCC-ccc-----chhHhhcCCCCCcEEEcCCCCCC-----cchHhhhCCCCCcEEecCCCccc-----cCC
Q 009136           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (542)
Q Consensus        44 ~~~L~~L~l~~~-~~~-----~l~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~  107 (542)
                      -+.|++|+++++ .+.     .+.+++.....|+.|+|++|.+.     .+...+...+.|++|+|+.|.|.     .+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            467888888875 665     45677888888888888888887     34556777788888888888877     344


Q ss_pred             ccccccCCccEEEcCCCc---CC-----cCCccccCCCCCCeEEccCCcc
Q 009136          108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNCI  149 (542)
Q Consensus       108 ~~~~~l~~L~~L~l~~~~---~~-----~~~~~~~~~~~L~~L~l~~~~~  149 (542)
                      +.+..-+.|++|+++++.   +.     .+...+..-+.|++|+++.+.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            456666778888887653   33     2334556667888888876654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.87  E-value=6.2e-06  Score=74.05  Aligned_cols=78  Identities=31%  Similarity=0.309  Sum_probs=47.5

Q ss_pred             cCCccEEECCCCcccccC---hhcccCccCcEEEccCCcCCCCC-hhhhhCCCCCcEEEccCCCCcc-cC------CCcc
Q 009136          379 AGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQ-VP------SDGF  447 (542)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~L~~n~i~~-~~------~~~~  447 (542)
                      +++|+.|++++|.++.++   ..+..+++|+.|+|++|.++++. ...+..+ +|++|+|.+|++.. ++      ...+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence            567777777777766543   34556777777777777777652 2223333 77777777777653 11      1124


Q ss_pred             CCCCCCceEe
Q 009136          448 KDIPMLQILD  457 (542)
Q Consensus       448 ~~~~~L~~L~  457 (542)
                      ..+|+|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            5567777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.83  E-value=2.3e-05  Score=66.40  Aligned_cols=115  Identities=15%  Similarity=0.178  Sum_probs=88.2

Q ss_pred             chhHhhcCCCCCcEEEcCCC-CCC-----cchHhhhCCCCCcEEecCCCccc-----cCCccccccCCccEEEcCCCcCC
Q 009136           59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK  127 (542)
Q Consensus        59 ~l~~~l~~~~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~  127 (542)
                      .+...+.+.+.|+.|+|+++ .+.     .+..++.....|+.|+|++|.+.     .+.+.+...+.|++|+|++|.+.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            45566778889999999986 776     34567888899999999999887     45556677889999999999987


Q ss_pred             -----cCCccccCCCCCCeEEccCCc---cc-----cCCcccccCCCccEEEccCCccc
Q 009136          128 -----ELPSSLGRCLNLSDFKASNNC---IT-----SLPEDLADCSKMSKLDVEGNKLT  173 (542)
Q Consensus       128 -----~~~~~~~~~~~L~~L~l~~~~---~~-----~l~~~~~~~~~L~~L~l~~~~~~  173 (542)
                           .+...+..-+.|++|+++++.   +.     .+...+...++|+.|+++.+.+.
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence                 344566667789999998653   33     34455777899999999876544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.00  E-value=0.0012  Score=52.04  Aligned_cols=55  Identities=27%  Similarity=0.500  Sum_probs=35.9

Q ss_pred             EEECCCCccc--ccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCc
Q 009136          384 KLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (542)
Q Consensus       384 ~L~l~~~~l~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~  440 (542)
                      .++.++.+++  .+|..+  .++|++|+|++|.|+.++...|..+++|+.|+|.+|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666666  666432  235677777777777777777777777777777777653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.90  E-value=0.00093  Score=52.75  Aligned_cols=55  Identities=27%  Similarity=0.393  Sum_probs=36.2

Q ss_pred             ceeeccCCccc--ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCC
Q 009136           12 GSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS   81 (542)
Q Consensus        12 ~~l~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~   81 (542)
                      +.+++++++++  .+|..+.               +++++|+|++|.++.++. .|..+++|+.|+|.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp---------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP---------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC---------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC---------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            35677777777  7776553               357777777777776653 4566667777777666554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.73  E-value=0.2  Score=36.91  Aligned_cols=49  Identities=8%  Similarity=0.105  Sum_probs=34.5

Q ss_pred             CCcCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCC
Q 009136          412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (542)
Q Consensus       412 ~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n  461 (542)
                      +..++.+...+|.+|.+|+.+.|.. .++.|...+|.+|.+|+.+.+.+.
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence            3456667777777777777777764 456677777777777777777654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=88.26  E-value=0.19  Score=37.11  Aligned_cols=47  Identities=19%  Similarity=0.275  Sum_probs=37.3

Q ss_pred             cCCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH
Q 009136          435 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL  482 (542)
Q Consensus       435 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  482 (542)
                      .+..++.|...+|.+|.+|+++.|-.+ ++.+...+|.+|.+|+.+.+
T Consensus         4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~   50 (100)
T 2lz0_A            4 EGEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL   50 (100)
T ss_dssp             CCCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred             CCCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence            345677888888999999999999755 77777888888877777666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	542
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 84.7 bits (208), Expect = 2e-18
 Identities = 74/353 (20%), Positives = 132/353 (37%), Gaps = 23/353 (6%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           +T L A +  +  + + +  L+ L +++   N++  I   +     L +  M NN ++ +
Sbjct: 46  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 103

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                  +  G    ++       ++       +   SN     +              L
Sbjct: 104 TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT----ISDISALSGLTSLQQL 159

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS------ 359
           +     T    L N  T   L    +++ +       T  E LI    ++S  +      
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 219

Query: 360 --KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
              ELSL G  L  I + +     +T LDL+ N I  L P LS    L  L L  N+I +
Sbjct: 220 NLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN 277

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
                L  L++L+ L+L+ N           ++  L  L L +N  ++ +  P SSL  L
Sbjct: 278 ISP--LAGLTALTNLELNENQ--LEDISPISNLKNLTYLTLYFN--NISDISPVSSLTKL 331

Query: 478 QELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 530
           Q L+         + +  L  +  L    N +  +     NLT +T+L L+D 
Sbjct: 332 QRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.4 bits (197), Expect = 7e-17
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 59/418 (14%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 23  EKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 80

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I   + + T LV    ++NQ                   +N    +L  +        K 
Sbjct: 81  IT-PLKNLTKLVDILMNNNQ---------IADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
               N+L + SN +     +       +         +  L+ L  L+        +   
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 226 I--SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283
              +   +L      NN +S +       + L  L L+ NQLK+    A    L+ LDL+
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGTLASLTNLTDLDLA 249

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
           NN +S L P +  +T L +L L  N +  +                              
Sbjct: 250 NNQISNLAP-LSGLTKLTELKLGANQISNISPL--------------------------- 281

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
                        +T+        N     S I     +T L L  N+I ++ P +SS  
Sbjct: 282 -----------AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLT 329

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
            LQ L  + NK+ D     L +L++++ L   +N +  +      ++  +  L L+  
Sbjct: 330 KLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.1 bits (178), Expect = 2e-14
 Identities = 62/337 (18%), Positives = 119/337 (35%), Gaps = 14/337 (4%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  ++  L +  +    S  +    +         + ++   +  L+ L  ++  +NQ
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 77

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           L +        +L  + ++NN ++ + P           L             +      
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRL----SVTSKELSLEGMNLSAIPSEIWEAG 380
            L               S  +       T L    ++T+ E      N  +  S + +  
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L  + N I ++ P      +L  L L+ N++KD     L SL++L+ L L NN + 
Sbjct: 198 NLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 254

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLR 500
            +       +  L  L L  N   +    P + L  L  L L     E  + I  L+ L 
Sbjct: 255 NLAP--LSGLTKLTELKLGAN--QISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 501 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
            L L  N++  I     +LT L  L  ++N +S +  
Sbjct: 311 YLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSS 346

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 41  WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSF 100
                +L  L L  NNI  +   + +L  L  L  ++NK+S++  ++  L  +  L    
Sbjct: 303 ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH 360

Query: 101 NSIMKIPDEIGSATALVKFDCSSN 124
           N I  +   + + T + +   +  
Sbjct: 361 NQISDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 7e-06
 Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 463 ASLPENPPFSSL---PHLQELYLRMQLREAPTDILR---LQQLRILDLSQNSLQSIPEGF 516
           A++ ++ P + +     L E    +  +   TD +    L Q+  L   +  ++SI +G 
Sbjct: 4   ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGV 62

Query: 517 KNLTSLTELDLSDNNISALPP 537
           + L +LT+++ S+N ++ + P
Sbjct: 63  EYLNNLTQINFSNNQLTDITP 83

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.3 bits (194), Expect = 7e-17
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 19/262 (7%)

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQ 125
           P   +L++ +NK++E+       L  L +L +  N I KI P        L +   S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           LKELP  + +   L + +   N IT + + + +      +   G      S     ++  
Sbjct: 91  LKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 186 LTELIA---SKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNA 241
           + +L     +   +  +P+  G    L  L L  N+I     +S+ G  +LA+  +  N+
Sbjct: 149 MKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 242 -LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE------ 293
             +     L     L  L L++N+L +          + V+ L NN++S +         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 294 -IGKMTTLRKLLLTGNPLRTLR 314
              K  +   + L  NP++   
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.1 bits (183), Expect = 2e-15
 Identities = 54/330 (16%), Positives = 119/330 (36%), Gaps = 55/330 (16%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
            CS   L+++P  L                             + LD++ NK+T + +  
Sbjct: 16  QCSDLGLEKVPKDLPPDT-------------------------ALLDLQNNKITEIKDGD 50

Query: 180 IASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
             +   L  LI   N ++ + P     L +L RL L +N++  +P  +       E  + 
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVH 108

Query: 239 NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPE 293
            N ++ +       L+++  ++L +N LK   +E        +LS + +++ +++ +P  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +    +L +L L GN +  + ++ + G        L        D+ +      L  +  
Sbjct: 169 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQ 406
                          L  +P  + +   I  + L  N+I  +           +  AS  
Sbjct: 227 N-----------NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 407 TLILSRNKIKDW--PDAILTSLSSLSCLKL 434
            + L  N ++ W    +    +   + ++L
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 5e-15
 Identities = 60/322 (18%), Positives = 106/322 (32%), Gaps = 51/322 (15%)

Query: 227 SGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLS 283
             C C L      +  L  +P +L        LDL +N++ E      +    L  L L 
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI 63

Query: 284 NNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           NN +S + P     +  L +L L+ N L+ L   +                   E     
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--------------ELRVHE 109

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
                +             + L    L +   E                           
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--------------------NGAFQGM 149

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
             L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+N 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 463 ASLPENPPFSSLPHLQELYLR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEG------ 515
            S  +N   ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 516 -FKNLTSLTELDLSDNNISALP 536
                 S + + L  N +    
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 1e-13
 Identities = 49/275 (17%), Positives = 95/275 (34%), Gaps = 23/275 (8%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++        L L  N +  ++           L  
Sbjct: 4   CPFRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK--NLHT 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L     +                  +L    + L L    L  +P ++ +   + +L + 
Sbjct: 60  LILINNKISKISPGA-----FAPLVKL----ERLYLSKNQLKELPEKMPK--TLQELRVH 108

Query: 389 RNSIQELPPELSSCASLQTLILSRN---KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            N I ++   + +  +   ++       K     +     +  LS +++ +  +  +P  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168

Query: 446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTD--ILRLQQLRILD 503
                P L  L L  N  +  +      L +L +L L      A  +  +     LR L 
Sbjct: 169 LP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 504 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           L+ N L  +P G  +   +  + L +NNISA+   
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 8e-12
 Identities = 55/325 (16%), Positives = 110/325 (33%), Gaps = 88/325 (27%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +  S+  L  VP ++  +                  L L +N I ++K+ D +NL  L 
Sbjct: 14  VVQCSDLGLEKVPKDLPPD---------------TALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-------------------- 110
            L + +NK+S++ P A   L  L+ L +S N + ++P+++                    
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118

Query: 111 -----GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                     +               +      LS  + ++  IT++P+ L     +++L
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTEL 176

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNL------------------------LNGMPE 201
            ++GNK+T +    +     L +L  S N                         L  +P 
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
            +     +  + LH N I +I S+                    P    K +    + L 
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSND----------------FCPPGYNTKKASYSGVSLF 280

Query: 262 SNQLKEYCVEACQLR----LSVLDL 282
           SN ++ + ++    R     + + L
Sbjct: 281 SNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 7e-12
 Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
            E++ +  NL+A+P ++ +  + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 419 PD-AILTSLSSLSCLKLDN--------------------NPLRQVPSDGFKDIPMLQILD 457
                L  L +L                           N L  +P    + +  LQ L 
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130

Query: 458 LSYNIAS--LPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 515
           L  N      P     +       L            +  L+ L  L L +NSL +IP+G
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

Query: 516 FKNLTSLTELDLSDN 530
           F     L    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 5/206 (2%)

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C    L  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227
           +  +LT L  +         +L  ++     +         ++ +  ++   L + +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNN 285
                  +  GN   +  P  L    KL  L L +N L E           L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLR 311
           SL  +P        L    L GNP  
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 4/199 (2%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIM 104
              ++     N+  L  DL      T+L++S N L     A +     L  L++    + 
Sbjct: 11  SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           K+  +             +                    + N   +     L    ++ +
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           L ++GN+L  L   L+     L +L  + N L  +    +  L  L  L L +N + +IP
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 224 SSISGCCSLAEFYMGNNAL 242
               G   L   ++  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 6e-08
 Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            +N   R+L  +P ++ K+                  L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDLPKD---------------TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +L++     G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L      +   N   T  P  L    K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 45/229 (19%), Positives = 72/229 (31%), Gaps = 38/229 (16%)

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
            +S   S  E       L+ALP +L K                          ++L LS 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK------------------------DTTILHLSE 40

Query: 285 NSLSGLPPE-IGKMTTLRKLLLTGNP---------LRTLRSSLVNGPTPALLKYLRSRLP 334
           N L       +   T L +L L             L  L +  ++      L  L   LP
Sbjct: 41  NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMN--LSAIPSEIWEAGEITKLDLSRNSI 392
                + S  +   + +     +   +      N   +  P  +    ++ KL L+ N++
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

Query: 393 QELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            ELP   L+   +L TL+L  N +   P         L    L  NP  
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 492 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 538
           ++ ++     ++  + +L ++P         T L LS+N +      
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLA 49

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 483 RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 531
           +  L   P D+ +     IL LS+N L +         T LT+L+L    
Sbjct: 19  KRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 8e-12
 Identities = 54/265 (20%), Positives = 86/265 (32%), Gaps = 15/265 (5%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                   L  +P  I      +++ L GN +  + ++          + L      +  
Sbjct: 15  TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRA-----CRNLTILWLHSNV 67

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                               S    L  ++    P+     G +  L L R  +QEL P 
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVD----PATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 399 -LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
                A+LQ L L  N ++  PD     L +L+ L L  N +  VP   F+ +  L  L 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRM--QLREAPTDILRLQQLRILDLSQNSLQSIPEG 515
           L  N  +      F  L  L  LYL            +  L+ L+ L L+ N        
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 516 FKNLTSLTELDLSDNNIS-ALPPEL 539
                 L +   S + +  +LP  L
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 47/290 (16%), Positives = 93/290 (32%), Gaps = 26/290 (8%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED----L 64
               + +   + L+ VP  +                   Q++ L  N I  +        
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAA---------------SQRIFLHGNRISHVPAASFRAC 55

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           RNL +L + +    ++         L     L  +       P        L        
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 125 QLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
            L+EL          L      +N + +LP+D   D   ++ L + GN+++ +       
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 240
              L  L+  +N +    P     L RL+ L L  N + ++   +++   +L    + +N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG 289
                       + L      S+++   C    +L    +  L+ N L G
Sbjct: 236 PWVCDCRARPLWAWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 11/250 (4%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL 129
              +     L  +P  I      + + +  N I  +P     +   L      SN L  +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 130 PSSLGRCLNLSDFKASNNCITS---LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            ++    L L +    ++        P       ++  L ++   L  L   L      L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 187 TELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA 244
             L    N L  +  +T   L  L  L LH NRI S+P  +  G  SL    +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 245 L-PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLR 301
           + P     L +L TL L +N L     EA      L  L L++N              L+
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 302 KLLLTGNPLR 311
           K   + + + 
Sbjct: 252 KFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 50/258 (19%), Positives = 79/258 (30%), Gaps = 33/258 (12%)

Query: 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
              + L  N +S +P    +             L  L              +    L E 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRN---------LTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL 395
            D   +     +             L L+   L  +   ++     +  L L  N++Q L
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 396 PPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 454
           P +      +L  L L  N+I   P+     L SL  L L  N +  V    F+D+  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLR-----------------MQLREAPTDIL--- 494
            L L  N  S       + L  LQ L L                   + R + +++    
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264

Query: 495 --RLQQLRILDLSQNSLQ 510
             RL    +  L+ N LQ
Sbjct: 265 PQRLAGRDLKRLAANDLQ 282

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 7e-10
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 11/252 (4%)

Query: 70  LTVLNVSHNKLS---ELPAAIGELHMLKS--LDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           +  L++S   L     +P+++  L  L    +    N +  IP  I   T L     +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 125 QLKELPSSLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            +          +    +   + N    +LP  ++    +  +  +GN+++    +   S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 183 WTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ++ L     I+   L   +P T  +L+                       +  + ++  N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQL-RLSVLDLSNNSLSGLPPEIGKMT 298
           +L+    ++G    L  LDL +N++     +   QL  L  L++S N+L G  P+ G + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 299 TLRKLLLTGNPL 310
                    N  
Sbjct: 292 RFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 44/271 (16%), Positives = 81/271 (29%), Gaps = 19/271 (7%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G                 L     + 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
              +       ++   +                      +P  I     +  +    N I
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFS---------YNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 393 Q-ELPPELSSCASLQT-LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
              +P    S + L T + +SRN++         +L+        N            D 
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ 510
              +I     ++A        S   +  +L         P  + +L+ L  L++S N+L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 511 -SIPEGFKNLTSLTELDLSDNNI---SALPP 537
             IP+   NL        ++N     S LP 
Sbjct: 282 GEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 52  LAHNNIE-KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
           L +N I   L + L  L  L  LNVS N L       G L        + N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 59/339 (17%), Positives = 100/339 (29%), Gaps = 31/339 (9%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
             EL  +   L+ +PE    L  L       N +  +P       SL    + NN L AL
Sbjct: 40  AHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELP---QSLKSLLVDNNNLKAL 93

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                 L  L      SN   E   E        +   +N+     P++           
Sbjct: 94  S----DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
                     +L              +LP+   S  S    + I            L+  
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
             + + + +       +  L++  N + +LP    S   L       + + + P      
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP------ 263

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRM 484
                      N             P L+ L++S N +  LP     +  P L+ L    
Sbjct: 264 -----PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-----ALPPRLERLIASF 313

Query: 485 -QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSL 522
             L E P      Q L+ L +  N L+  P+  +++  L
Sbjct: 314 NHLAEVPEL---PQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             P L  LNVS+NKL ELPA    L   + L  SFN + ++P+   +   L +     N 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQN---LKQLHVEYNP 335

Query: 126 LKELPSSLGRCLNL 139
           L+E P       +L
Sbjct: 336 LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL++    L  +P+       + +L  S N + E+P       +L+ L +  N ++++P
Sbjct: 287 EELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFP 340

Query: 420 DAILTSLSSLSCLKLDN 436
           D       S+  L++++
Sbjct: 341 D----IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             SL E  + NN L  LPA   +L +L       N L E  V      L  L +  N L 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAE--VPELPQNLKQLHVEYNPLR 337

Query: 289 GLPPEIGKMTTLR 301
             P     +  LR
Sbjct: 338 EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 29  YKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88
           Y N               L++L +++N + +L      L     L  S N L+E+P    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVP---E 321

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATAL 116
               LK L V +N + + PD   S   L
Sbjct: 322 LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 + +L++S N + ELP        L+ LI S N + + P+       +L  L ++
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPE----LPQNLKQLHVE 332

Query: 436 NNPLRQVPSDGFKDIPMLQI 455
            NPLR+ P D  + +  L++
Sbjct: 333 YNPLREFP-DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 6e-07
 Identities = 52/338 (15%), Positives = 92/338 (27%), Gaps = 51/338 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L L+N  L  +P                     L+ L+ + N++ +L E  ++   L  L
Sbjct: 43  LELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQS---LKSL 83

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
            V +N L  L      L  L   +     + ++ +        V  +         PS  
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSK---------------------LDVEGNKL 172
                 +  +                   S                         E   L
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             L+     +  + T      +L                        +S           
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
              Y  N + + + +       L  L++ +N+L E  + A   RL  L  S N L+ +P 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPE 321

Query: 293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                  L++L +  NPLR           P  ++ LR
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDI------PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 53/360 (14%), Positives = 97/360 (26%), Gaps = 49/360 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             +L L +  +  L E   +L     L  S N L+ELP        LKSL V  N++  +
Sbjct: 40  AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQS---LKSLLVDNNNLKAL 93

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
            D +      +    +  +      +      +     S   +  LP  L   +  +   
Sbjct: 94  SD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            E  +L  L           +        L+      G+       +L     L+   + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +           +     +              L    + E            L   N S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            + +        +L +L ++ N L  L         PAL   L                 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIEL---------PALPPRL----------------- 306

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L     +L+ +P        + +L +  N ++E P    S   L+
Sbjct: 307 -------------ERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 57  IEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATAL 116
           + +L++ L        L +++  LS LP     L   +SL  S NS+ ++P+   S  +L
Sbjct: 29  VSRLRDCLDRQ--AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSL 83

Query: 117 VKFDCSSNQLKELPSSLGRC 136
           +  + +   L +LP  L   
Sbjct: 84  LVDNNNLKALSDLPPLLEYL 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 498 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 541
           Q   L+L+   L S+PE       L  L  S N+++ LP    S
Sbjct: 39  QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQS 79

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 19/82 (23%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+SN  L ++P    +                L++LI + N++ ++ E  +N   L  
Sbjct: 288 ELNVSNNKLIELPALPPR----------------LERLIASFNHLAEVPELPQN---LKQ 328

Query: 73  LNVSHNKLSELPAAIGELHMLK 94
           L+V +N L E P     +  L+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 269 CVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319
            +  C  R    L+L+N  LS LP        L  L+ + N L  L     +
Sbjct: 31  RLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQS 79

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 28/88 (31%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQS 511
              L+L+   ++SLPE PP                            L  L  S NSL  
Sbjct: 40  AHELELNNLGLSSLPELPP---------------------------HLESLVASCNSLTE 72

Query: 512 IPEGFKNLTSLTELDLSDNNISALPPEL 539
           +PE  ++L SL   + +   +S LPP L
Sbjct: 73  LPELPQSLKSLLVDNNNLKALSDLPPLL 100

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP 107
           + L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N++  + 
Sbjct: 1   RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 108 DEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
                          +N+L++      L  C  L       N +     
Sbjct: 60  GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPT 491
           L L +  L  +     + + ++  LDLS+N       P  ++L  L+ L       E   
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD 59

Query: 492 DILRLQQLRILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPPELVSV 542
            +  L +L+ L L  N LQ     +   +   L  L+L  N++         +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271
           L L     L++   +     +    + +N L ALP  L  L  L  L    N L+     
Sbjct: 3   LHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 272 ACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
           A   RL  L L NN L        +     L  L L GN L              + + L
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGIQERL 112

Query: 330 RSRLP 334
              LP
Sbjct: 113 AEMLP 117

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 27/139 (19%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L L+   +  L   L     +  L LS N+++  P A+  +L  L  L+  +N L  V  
Sbjct: 3   LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG 60

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILD 503
               ++P LQ L L  N +       P  S P L  L                      +
Sbjct: 61  --VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL----------------------N 96

Query: 504 LSQNSLQSIPEGFKNLTSL 522
           L  NSL       + L  +
Sbjct: 97  LQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           + L L   +L+ +   + +   +T LDLS N ++ LPP L++   L+ L  S N +++  
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--FSSLP 475
                    L  L L NN L+Q  +       P L +L+L  N +             LP
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 476 HLQEL 480
            +  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
             +   L  L   L + L ++    S+N + +LP  LA    +  L    N L  +    
Sbjct: 4   HLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 180 IASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
                 L EL+   N L      + + S  RL+ L+L  N +            +
Sbjct: 63  N--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194
           R L+L+     +  +T L   L     ++ LD+  N+L  L   L A   +     +   
Sbjct: 1   RVLHLA-----HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 54

Query: 195 LLNGMPETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
                 + + +L RL  L L  NR+   +    +  C  L    +  N+L        +L
Sbjct: 55  --LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 253 SKL 255
           +++
Sbjct: 113 AEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 500 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 539
           R+L L+   L  +    + L  +T LDLS N + ALPP L
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL 39

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 40/157 (25%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           VL L++  L+ L   + ++  +  L L+ N LR L  +L       +L+           
Sbjct: 2   VLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA---------- 50

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP- 397
                                        N       +     + +L L  N +Q+    
Sbjct: 51  ---------------------------SDNALENVDGVANLPRLQELLLCNNRLQQSAAI 83

Query: 398 -ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
             L SC  L  L L  N +             L  + 
Sbjct: 84  QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 4e-07
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 13/182 (7%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPEDLADCSKM--SKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D    N       + L                   +
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND----NELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLA 233
             N    +  +    +    +     +    L +L  L+L+ N+I  + P S     SL 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPP 292
              + +N  +           L    L+    +  C    ++R + + DL ++       
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR--CGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 293 EI 294
             
Sbjct: 188 NS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 16/194 (8%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +D +   L  +P +I       +LLL  N L  + S  + G  P L+K 
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
              R         +      I          KE+                  ++  L+L 
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI---------SNKMFLGLHQLKTLNLY 110

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N I  + P       SL +L    +   +    +      L    L+    R       
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAAR---CGAP 166

Query: 448 KDIPMLQILDLSYN 461
             +  +QI DL ++
Sbjct: 167 SKVRDVQIKDLPHS 180

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 5e-07
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 8/132 (6%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           LDL    I  +    ++      +  S N+I+         L  L  L ++NN + ++  
Sbjct: 23  LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGE 80

Query: 445 DGFKDIPMLQILDLS-YNIASLPENPPFSSLPHLQELYLRMQLREAPTD-----ILRLQQ 498
              + +P L  L L+  ++  L +  P +SL  L  L +               I ++ Q
Sbjct: 81  GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 140

Query: 499 LRILDLSQNSLQ 510
           +R+LD  +  L+
Sbjct: 141 VRVLDFQKVKLK 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 19/56 (33%)

Query: 482 LRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           L  +L E         + R LDL    +  I      L     +D SDN I  L  
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 58

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153
                     ++   +          +L++   +NN +  L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL L G  +  I +      +   +D S N I++L         L+TL+++ N+I    
Sbjct: 21  RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRIG 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGF----KDIPMLQILDLSYNIASLPENPPFSSLP 475
           + +  +L  L+ L L NN L ++         K +  L IL                 +P
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 476 HLQEL 480
            ++ L
Sbjct: 140 QVRVL 144

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 18/172 (10%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           IT L      +  +   +    +L  L L  N+I D       +  +   L  +      
Sbjct: 43  ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 442 VP----------------SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ 485
                             +D      +  +  L  ++  +    P + L +LQ L +   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161

Query: 486 LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
                T +  L +L  L    N +  I     +L +L E+ L +N IS + P
Sbjct: 162 QVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 9/193 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L      +  + E ++ L  L  L +  N++++L        + +            
Sbjct: 43  ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +   +    +        + L     L         I+ L          +   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL------AGLTNLQY 155

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +      V     +A+ + LT L A  N ++ +   + SL  LI + L  N+I  +   +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PL 213

Query: 227 SGCCSLAEFYMGN 239
           +   +L    + N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
            L     +    + +++      +L  + +L      +  I   +     L+  +   NQ
Sbjct: 17  ALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           + +L        NL+           L    A     S   ++     +     +A  + 
Sbjct: 75  ITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           L  L    N +  +    G  +       +     S  + ++    L      +N +S +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDI 188

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              L  L  L                        + L NN +S + P +   + L  + L
Sbjct: 189 S-PLASLPNL----------------------IEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 306 T 306
           T
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 468 NPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDL 527
             P ++L  L  L          + +  L  L  + L  N +  +     N ++L  + L
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 528 SD 529
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L+    +    + + +   +A    ++ L      ++ +   +  +  L  L L  N + 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT 76

Query: 312 TLRS-----SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            L        +             S +   +  +        IT  T L+  S    L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
                            +     N+       L++ + L TL    NKI D     L SL
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQ 485
            +L  + L NN +  V                           P ++  +L  + L  Q
Sbjct: 195 PNLIEVHLKNNQISDVS--------------------------PLANTSNLFIVTLTNQ 227

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 496 LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP 537
                ILD+S+  + S+P    +NL  L        N+  LP 
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               +  +   N +++ P+ +    S    L +    +  +PS G +++  L+     YN
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YN 234

Query: 462 IASLP 466
           +  LP
Sbjct: 235 LKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 26/214 (12%), Positives = 61/214 (28%), Gaps = 34/214 (15%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
           +++    +   ++ IPS++       +L      ++ +     S    L+ + +S+N + 
Sbjct: 9   SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476
           +  +A + S                +  +      +  +  L  +   +   P    +  
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 477 LQE------------------------------LYLRMQLREAPTDILRLQQLRILDLSQ 506
           LQ+                              L                Q   +     
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 507 NSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 539
           N+L+ +P   F   +    LD+S   I +LP   
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 220

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 33/239 (13%), Positives = 63/239 (26%), Gaps = 24/239 (10%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G        +   
Sbjct: 6   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                      +    +         +          +    +           L     
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 393 -------------------QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
                               E    +        L L++N I++  +             
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRMQLREAPT 491
            DNN L ++P+D F       ILD+S   I SLP      +L  L+       L++ PT
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARSTY-NLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 64  LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP 107
                   +L++S  ++  LP+  +  L  L++   S  ++ K+P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLP 239

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 24/154 (15%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
           +L    +++L   +S         L    ++  PD  L + +    L   ++ +      
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSS-MAATLRI 59

Query: 446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLS 505
             ++IP L  L+LS N     ++                        + +   L+IL+LS
Sbjct: 60  IEENIPELLSLNLSNNRLYRLDDMSSI--------------------VQKAPNLKILNLS 99

Query: 506 QNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE 538
            N L+S  E        L EL L  N++S    +
Sbjct: 100 GNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    +E+LK  +      +   +    L   P  +   ++   L+   +    +     
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 112 SATALVKFDCSSNQL---KELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 167
           +   L+  + S+N+L    ++ S + +  NL     S N + S  E D     K+ +L +
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200
           +GN L+    +     + + E       L+G  
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 477 LQELYLR-MQLREAPTDIL--RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLS 528
           +Q L ++  +L +A    L   LQQ +++ L    L     + I    +   +L EL+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 529 DNNIS 533
            N + 
Sbjct: 64  SNELG 68

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 45  VDLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           +D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 98  VSFNSI 103
           +  N +
Sbjct: 62  LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 497 QQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS 533
             LR+L L+   +      S+        SL ELDLS+N + 
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 410

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 4e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 382 ITKLDLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSC 431
           +  L L+   +       L   L +  SL+ L LS N + D       +++      L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 432 LKLDNNPLRQVPSDGFKDI----PMLQIL 456
           L L +    +   D  + +    P L+++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 223 PSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEA----- 272
                    L   ++ +  +S     +L A L     L  LDL +N L +  +       
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 273 --CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
                 L  L L +   S    +      L+ L      LR +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR-----LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 13/92 (14%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLR------MQLREAPTDILRLQQLRILDLS 505
           +Q LD+    ++          L   Q + L        + ++  + +     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 506 QNSL-----QSIPEGFK-NLTSLTELDLSDNN 531
            N L       + +G +     + +L L +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 404 SLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLR----QVPSDGFKDIPMLQILDL 458
            +Q+L +   ++ D     +L  L     ++LD+  L     +  S   +  P L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 459 SYN------IASLPENPPFSSLPHLQELYLRMQ 485
             N      +  + +    +    +Q+L L+  
Sbjct: 63  RSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 356 SVTSKELSLEGMNLS-AIPSEIWEA-GEITKLDLSRNSI-----QELPPELSSCASLQTL 408
           S+  + L ++   LS A  +E+     +   + L    +     +++   L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 409 ILSRNKIKDWPDAILTSLSSLSCLKL 434
            L  N++ D     +         K+
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC--LNLSDFKASNNCIT 150
           ++SLD+    +                  S  +  EL   L +C  + L D   +     
Sbjct: 4   IQSLDIQCEEL------------------SDARWAELLPLLQQCQVVRLDDCGLTEARCK 45

Query: 151 SLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIAS 192
            +   L     +++L++  N+L       +   L      + +L   
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTEL 189
           R L L+D   S++  +SL   L     + +LD+  N L       L  ++     +L +L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 190 IASKNLLNG 198
           +      + 
Sbjct: 432 VLYDIYWSE 440

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 44/339 (12%), Positives = 89/339 (26%), Gaps = 42/339 (12%)

Query: 43  EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           E   L+   +   + + +   L     +  + +S N +       L   I     L+  +
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 98  VSFNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDF-------------- 142
            S     ++ DEI  A   L++      +L  +  S       +                
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 143 ---------------KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                           A      ++ +   +   +  +    N+L   S    A      
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
            L+ +  ++       G    L+    +   +  +    +    L    +     S    
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE------IGKMTTLR 301
               L+        +  + +   +   + L  L L  N +              KM  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340
            L L GN        +V+          R  L E +D E
Sbjct: 306 FLELNGNRFSEE-DDVVDEIREVFSTRGRGELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 354 RLSVTSKELSLEGM---NLSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASL 405
           R S+  K L L+ +   +  ++ + + E   + ++ LS N+I     + L   ++S   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +    S        D I  +L  L    L    L  
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 494 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELVS 541
           +  + L++  ++    +S+        S+ E+ LS N I       +S
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS 52

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLR 440
             ++    + +   L    S++ ++LS N I      W    + S   L   +  +    
Sbjct: 13  DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 441 QVPSDGFKDIPML 453
           +V  +  + + +L
Sbjct: 73  RVKDEIPEALRLL 85

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 39/321 (12%), Positives = 80/321 (24%), Gaps = 20/321 (6%)

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSN 284
           SL    +      ++ A L +   +  + L  N +              +  L + + S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
                +  EI +   L    L   P       L             ++ P  +     T 
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCP------KLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
            E L      L   +       +   A+  +   A  +  +   RN ++    +  +   
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
               +L   K+             L         L+ +         +            
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL--AIALK 240

Query: 465 LPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSL-----QSIPEG-FKN 518
              N     L                   L    L+ L L  N +     +++     + 
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 519 LTSLTELDLSDNNISALPPEL 539
           +  L  L+L+ N  S     +
Sbjct: 301 MPDLLFLELNGNRFSEEDDVV 321

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 8/156 (5%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           I ++  + + I+ +   +    ++  L L+ NK+ D        L++L  L        +
Sbjct: 48  IDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-----LANLKNLGWLFLDENK 101

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRI 501
           V                  +     +      LP L+ LYL        T + RL +L  
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDT 160

Query: 502 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           L L  N +  I      LT L  L LS N+IS L  
Sbjct: 161 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 16/210 (7%)

Query: 239 NNALSALPAELGK------LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
            +    +P  + +       ++    +L    + +   +     +  +  +N+ +  +  
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 63

Query: 293 EIGKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            I  +  + KL L GN L        L++          +K L S     +    S    
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
            +  +   + +   E    G N     + +    ++  L L  N I ++ P L+    LQ
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ 181

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            L LS+N I D     L  L +L  L+L +
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 9/176 (5%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
             L   N++   S+  +  ++T L   R  I+ +   +    +L  +  S N++ D    
Sbjct: 23  TVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP- 79

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
                       +D        +D      +  +  L+     + +  P  +L +L  L 
Sbjct: 80  -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 482 LRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 537
           L        + +  L  L+ L+ S N +  +     NLT+L  LD+S N +S +  
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISV 189

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 19  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 76

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I         +     ++             L             +   D+     ++ L
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +        +S+    S     + +   +      + + +L+ L RLD+  N++  I   
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-V 189

Query: 226 ISGCCSL 232
           ++   +L
Sbjct: 190 LAKLTNL 196

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 4/147 (2%)

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
           P+         L  +R+   D    +  + +       +   L+ +     + +  L+ L
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRM-QLREAPTDILRLQQLRILDLSQNSLQ--SIP 513
            +  +         F   P L  L L    L       ++   L+ L LS N L      
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Query: 514 EGFKNLTSLTELDLSDNNIS-ALPPEL 539
              +         + +  +       L
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCHGQGPL 148

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHS 262
                  L   ++  L     + G  +L E Y+     L  L       L +L  L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 263 NQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           + L+    +A     RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L    +     L  L   K
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 194 NLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL--SALPAELG 250
           + L  + P+      RL RL+L  N + S+        SL E  +  N L  S     L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 251 KLSKLGTLDLHSNQLK 266
           +  + G   +   +L+
Sbjct: 126 RWEEEGLGGVPEQKLQ 141

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236
            +++A+     EL      +  M  T+ +L     L L  N I  I  S+SG  +L    
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILS 76

Query: 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEI 294
           +G N +  +         L  L +  NQ+         + L VL +SNN ++      ++
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
             +  L  LLL GNPL        N  T      +  RLP
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKE--NNATSEYRIEVVKRLP 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	542
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.87

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=8.8e-27  Score=225.92  Aligned_cols=340  Identities=24%  Similarity=0.336  Sum_probs=186.1

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      +.+|++|+++++.++.+ +.+..+++|++|++++|.+++++. +.++++|++|++++|.+..+++ ++.+++|+.+++++
T Consensus        43 l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             HTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-cccccccccccccc
Confidence            45677777777777665 356667777777777777776653 6677777777777777666543 66677777777766


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcc-cccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (542)
                      +.++.++. ......+.......+.+..+... .................     ..+.............+.... ...
T Consensus       120 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~  192 (384)
T d2omza2         120 NQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPLANLTTLERLDISSNKVSD-ISV  192 (384)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGGTTCTTCCEEECCSSCCCC-CGG
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccchh-----hhhcccccccccccccccccc-ccc
Confidence            66665432 23334444554444433322111 01111111111111111     012222222222222222211 122


Q ss_pred             cCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcccchhhhcccccEEEc
Q 009136          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (542)
Q Consensus       203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l  282 (542)
                      ...+++++.+.++++.+..++. ...+++|+.+++++|.+..++ .+..+++|+.+++++|.++..+......+|+.+++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  270 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL  270 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             cccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCcccccccCCEeec
Confidence            3334444455555444443321 233444455555554444432 23444444445444444444333333333444444


Q ss_pred             cCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEE
Q 009136          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (542)
Q Consensus       283 ~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (542)
                      +++.+.+++. +..+..+                                                           +.+
T Consensus       271 ~~~~l~~~~~-~~~~~~l-----------------------------------------------------------~~l  290 (384)
T d2omza2         271 GANQISNISP-LAGLTAL-----------------------------------------------------------TNL  290 (384)
T ss_dssp             CSSCCCCCGG-GTTCTTC-----------------------------------------------------------SEE
T ss_pred             cCcccCCCCc-ccccccc-----------------------------------------------------------ccc
Confidence            4444433322 3333333                                                           344


Q ss_pred             EecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCccc
Q 009136          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV  442 (542)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~  442 (542)
                      .+.++.+..++ .+..+++++.|++++|++++++. +..+++|++|++++|++++++  .+.++++|++|++++|+++++
T Consensus       291 ~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         291 ELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             ECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBC
T ss_pred             ccccccccccc-ccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCC
Confidence            44444444432 35557788889999888888764 778889999999999888765  368889999999999988877


Q ss_pred             CCCccCCCCCCceEecCCC
Q 009136          443 PSDGFKDIPMLQILDLSYN  461 (542)
Q Consensus       443 ~~~~~~~~~~L~~L~l~~n  461 (542)
                      .+  +.++++|+.|++++|
T Consensus       367 ~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         367 TP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GG--GTTCTTCSEEECCCE
T ss_pred             hh--hccCCCCCEeeCCCC
Confidence            54  788889999998876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1e-25  Score=218.31  Aligned_cols=343  Identities=23%  Similarity=0.374  Sum_probs=251.5

Q ss_pred             HHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH
Q 009136            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (542)
Q Consensus         6 ~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~   85 (542)
                      +...++++|++++++|++++ .+ +.            +++|++|++++|.++.++ .+.++++|++|++++|.+..++ 
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~-gl-~~------------L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~-  104 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSID-GV-EY------------LNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-  104 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCT-TG-GG------------CTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             HHhCCCCEEECCCCCCCCcc-cc-cc------------CCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccc-
Confidence            34568999999999999874 22 22            789999999999999887 4999999999999999999875 


Q ss_pred             hhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEE
Q 009136           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL  165 (542)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  165 (542)
                      .+..+++|+.|+++++.++.++. ......+.......+.+..+.... .....+....... .. ....+.........
T Consensus       105 ~l~~l~~L~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~  180 (384)
T d2omza2         105 PLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALS-GLTSLQQLSFGNQ-VT-DLKPLANLTTLERL  180 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGT-TCTTCSEEEEEES-CC-CCGGGTTCTTCCEE
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccccccccc-ccccccccccccc-cc-hhhhhccccccccc
Confidence            48899999999999998887654 344556666666666555332211 1111111111111 11 11123334444444


Q ss_pred             EccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCccc
Q 009136          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  245 (542)
                      ....+....  ...+..+++++.+.++++.++.++. ...+++|+.+++++|.+..++ .+..+++|+.+++++|.+..+
T Consensus       181 ~~~~~~~~~--~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~  256 (384)
T d2omza2         181 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL  256 (384)
T ss_dssp             ECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred             ccccccccc--ccccccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCC
Confidence            444443332  2236677888888888888877653 355678888888888887663 567888899999999888877


Q ss_pred             chhccCCCCccEEEcCCCcCcccchhhhcccccEEEccCCCCCCCChhhcCcCCCcEEEcCCCccccccccccCCCcHHH
Q 009136          246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL  325 (542)
Q Consensus       246 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~~~l~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  325 (542)
                      +. +..+++|++++++++.+...+.......++.++++.|.+.+++. +..+++++.+++++|.+..+            
T Consensus       257 ~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l------------  322 (384)
T d2omza2         257 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI------------  322 (384)
T ss_dssp             GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC------------
T ss_pred             Cc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccc-cchhcccCeEECCCCCCCCC------------
Confidence            54 77788999999999888877766666668899999888887643 77788888888888766432            


Q ss_pred             HHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCCCccccccCCccEEECCCCcccccChhcccCccC
Q 009136          326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL  405 (542)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~~L  405 (542)
                                                                     + .+..+++|++|++++|.++.++ .+.++++|
T Consensus       323 -----------------------------------------------~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L  353 (384)
T d2omza2         323 -----------------------------------------------S-PVSSLTKLQRLFFANNKVSDVS-SLANLTNI  353 (384)
T ss_dssp             -----------------------------------------------G-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTC
T ss_pred             -----------------------------------------------c-ccccCCCCCEEECCCCCCCCCh-hHcCCCCC
Confidence                                                           1 2455788999999999998887 58889999


Q ss_pred             cEEEccCCcCCCCChhhhhCCCCCcEEEccCC
Q 009136          406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (542)
Q Consensus       406 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n  437 (542)
                      ++|++++|+++++++  +.++++|+.|+|++|
T Consensus       354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999999998765  788999999999886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.7e-23  Score=192.28  Aligned_cols=243  Identities=22%  Similarity=0.327  Sum_probs=197.0

Q ss_pred             hhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc-hHhh
Q 009136           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (542)
Q Consensus        10 ~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l-~~~~   87 (542)
                      ..+.+|+++.+++++|..+.               +++++|++++|.++.+++ +|.++++|++|+++++.+..+ |.+|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCEEEecCCCCCccCCCCC---------------CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh
Confidence            35678999999999998774               469999999999999985 689999999999999999987 5579


Q ss_pred             hCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCc-cccCCCCCCeEEccCCccc---cCCcccccCCCcc
Q 009136           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (542)
Q Consensus        88 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~  163 (542)
                      ..+++|++|++++|+++.+|..+  ...+..|.+.++.+..++. .+.....++.++...+...   .....+..+++|+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~  153 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  153 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hCCCccCEecccCCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccC
Confidence            99999999999999999887653  4578899999988887664 3556777888888776544   3344577788999


Q ss_pred             EEEccCCcccccchhhhhccccCcEEEcCCcccCcc-ccccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCc
Q 009136          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA  241 (542)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~  241 (542)
                      .+++.++.+..++..   ..+++++|++++|..... +..+.+++.++.|++++|.+..+ +..+..+++|++|++++|.
T Consensus       154 ~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         154 YIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             EEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             ccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc
Confidence            999999888877643   357888999998887643 46678888899999999888865 4567888899999999999


Q ss_pred             CcccchhccCCCCccEEEcCCCcCcccchhh
Q 009136          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEA  272 (542)
Q Consensus       242 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  272 (542)
                      ++.+|.++..+++|++|++++|+++.++...
T Consensus       231 L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         231 LVKVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             ccccccccccccCCCEEECCCCccCccChhh
Confidence            9888888888899999999988888765543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=9.7e-23  Score=190.13  Aligned_cols=148  Identities=24%  Similarity=0.361  Sum_probs=70.3

Q ss_pred             ccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCc-ccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCc
Q 009136          116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (542)
Q Consensus       116 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (542)
                      .++++.++.+++++|..+.  +++++|++++|.++.++. .|..+++|++|+++++.+..+.+..|..+++|+++++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            3444444444555544332  345555555555554443 3455555555555555555555444555555555555555


Q ss_pred             ccCccccccCCCCcccEEEccCCCCccCCC-CCcCCCCCcEEEcCCCcCc---ccchhccCCCCccEEEcCCCcCcc
Q 009136          195 LLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKE  267 (542)
Q Consensus       195 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~i~~  267 (542)
                      .++.+|..+  ...+..+...++.+..++. .+........+....+...   ..+..+..+++|+.+++++|.+..
T Consensus        90 ~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          90 QLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             CCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             ccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            555554322  2345555555555444332 2233444444444444332   112334445555555555554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-21  Score=178.16  Aligned_cols=194  Identities=26%  Similarity=0.338  Sum_probs=105.9

Q ss_pred             hceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchh-HhhcCCCCCcEEEcCCCCCCcchHhhhC
Q 009136           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (542)
Q Consensus        11 l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~   89 (542)
                      +.++|+++++++++|.++.               +++++|++++|.++.++ .+|..+++|++|++++|.++.++ .+..
T Consensus        12 ~~~v~C~~~~L~~iP~~lp---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~   75 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGT   75 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSC
T ss_pred             CeEEEccCCCCCeeCcCcC---------------cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cccc
Confidence            3455666666666665542               24666666666666554 35666666666666666666553 2345


Q ss_pred             CCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCC-ccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (542)
Q Consensus        90 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  168 (542)
                      +++|++|++++|.++..+..+..+++|+.|+++++.+..++ ..+..+.++++|++.++.+.                  
T Consensus        76 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~------------------  137 (266)
T d1p9ag_          76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK------------------  137 (266)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccc------------------
Confidence            56666666666666655555555666666666655555433 23334445555555555444                  


Q ss_pred             CCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc
Q 009136          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (542)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~  243 (542)
                           .++...+..+++++.+++++|.++.++ ..+..+++|+.|++++|+++.+|..+..+++|+.|++++|++.
T Consensus       138 -----~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         138 -----TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             -----CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             -----eeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence                 444444444444444555554444433 2344455555555555555555555555555555555555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=4e-22  Score=186.55  Aligned_cols=239  Identities=26%  Similarity=0.335  Sum_probs=188.2

Q ss_pred             CCcEEEcCCCccc---chhHhhcCCCCCcEEEcCC-CCCC-cchHhhhCCCCCcEEecCCCccccC-CccccccCCccEE
Q 009136           46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKF  119 (542)
Q Consensus        46 ~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L  119 (542)
                      +++.|+++++.+.   .+|..+.++++|++|++++ +.+. .+|..+.++++|++|++++|.+..+ +..+..+++|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5888999998877   5788999999999999986 5666 7888999999999999999988854 5568889999999


Q ss_pred             EcCCCcCC-cCCccccCCCCCCeEEccCCccc-cCCcccccCCCc-cEEEccCCcccccchhhhhccccCcEEEcCCccc
Q 009136          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM-SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (542)
Q Consensus       120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  196 (542)
                      ++++|.+. .+|..+.+++.+++++++++.+. .+|..+..+..+ +.+.+++|++.......+..+... .+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99998866 67788899999999999999887 677777777665 888889888887766656665544 678877766


Q ss_pred             C-ccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCCcCcc-cchhhh
Q 009136          197 N-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE-YCVEAC  273 (542)
Q Consensus       197 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~  273 (542)
                      . .+|..+..+++++.+++.++.+...+..+..+++++.|++++|++. .+|..++++++|++|++++|++++ +|....
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~  289 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCccc
Confidence            4 4666777888899999998888766667788889999999999888 788888888999999998888773 332222


Q ss_pred             cccccEEEccCC
Q 009136          274 QLRLSVLDLSNN  285 (542)
Q Consensus       274 ~~~L~~l~l~~~  285 (542)
                      ..+|+.+++++|
T Consensus       290 L~~L~~l~l~~N  301 (313)
T d1ogqa_         290 LQRFDVSAYANN  301 (313)
T ss_dssp             GGGSCGGGTCSS
T ss_pred             CCCCCHHHhCCC
Confidence            223444444444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=6e-22  Score=185.34  Aligned_cols=241  Identities=24%  Similarity=0.356  Sum_probs=206.9

Q ss_pred             hhceeeccCCccc---ccchhhhhccccCCCCCceeeecCCcEEEcCC-Cccc-chhHhhcCCCCCcEEEcCCCCCCcc-
Q 009136           10 TSGSLNLSNRSLR---DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIE-KLKEDLRNLPLLTVLNVSHNKLSEL-   83 (542)
Q Consensus        10 ~l~~l~l~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~l~~~~~L~~L~l~~~~~~~l-   83 (542)
                      .++.||++++.+.   .+|..+..             +++|++|++++ |.+. .+|..+.++++|++|++++|.+..+ 
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~-------------L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLAN-------------LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGG-------------CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             EEEEEECCCCCCCCCCCCChHHhc-------------Cccccccccccccccccccccccccccccchhhhccccccccc
Confidence            4788999999887   57777765             89999999997 6676 7999999999999999999999976 


Q ss_pred             hHhhhCCCCCcEEecCCCccc-cCCccccccCCccEEEcCCCcCC-cCCccccCCCCC-CeEEccCCccccC-CcccccC
Q 009136           84 PAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNL-SDFKASNNCITSL-PEDLADC  159 (542)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L-~~L~l~~~~~~~l-~~~~~~~  159 (542)
                      +..+..+.+|+++++++|.+. .+|..+.+++.++++++++|.+. .+|..+..+..+ +.++++.+.+... +..+..+
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            457889999999999999766 67889999999999999999987 788888887776 8899999988844 4445555


Q ss_pred             CCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCc-cCCCCCcCCCCCcEEEcC
Q 009136          160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMG  238 (542)
Q Consensus       160 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~l~l~  238 (542)
                      . ...+++..+.........+..+++++.+++.++.+...+..+..+++++.|++++|+++ .+|..+..+++|++|+++
T Consensus       198 ~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             c-ccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            4 45799988887766666688899999999999999877777888999999999999998 789999999999999999


Q ss_pred             CCcCc-ccchhccCCCCccEEEcCCCcC
Q 009136          239 NNALS-ALPAELGKLSKLGTLDLHSNQL  265 (542)
Q Consensus       239 ~~~~~-~~~~~~~~~~~L~~L~l~~~~i  265 (542)
                      +|.+. .+|. ++++++|+.+++++|+.
T Consensus       277 ~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         277 FNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             SSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             CCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            99998 6764 67888999999999863

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.6e-21  Score=173.80  Aligned_cols=199  Identities=24%  Similarity=0.264  Sum_probs=146.0

Q ss_pred             eecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCCccccccCCccEEEc
Q 009136           43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (542)
Q Consensus        43 ~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l  121 (542)
                      +...+.+++.+++.++.+|..+.  +++++|+|++|.++.++. +|.++++|++|++++|.++.++. ++.+++|++|++
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEEC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccc
Confidence            34556666777777777665543  456677777666666643 56666666666666666555432 334445555555


Q ss_pred             CCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccc
Q 009136          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (542)
Q Consensus       122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  201 (542)
                      ++|                       .+...+..+..+++|+.|+++++.+..+....+..+.+++++++.+|.+..++.
T Consensus        85 s~N-----------------------~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          85 SHN-----------------------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (266)
T ss_dssp             CSS-----------------------CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             ccc-----------------------cccccccccccccccccccccccccceeeccccccccccccccccccccceecc
Confidence            544                       444444455566677777777777777777778888999999999999988764


Q ss_pred             -ccCCCCcccEEEccCCCCccCC-CCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcCCCcCcc
Q 009136          202 -TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE  267 (542)
Q Consensus       202 -~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~  267 (542)
                       .+..++.++.+++++|+++.++ ..+..+++|++|++++|.+..+|..+..+++|+.|++++|.+..
T Consensus       142 ~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCC
Confidence             4677899999999999999775 46788999999999999999999999999999999999998763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=6.4e-19  Score=167.80  Aligned_cols=140  Identities=29%  Similarity=0.346  Sum_probs=80.8

Q ss_pred             cCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCC
Q 009136           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~  124 (542)
                      .++++|+++++.++.+|+.   .++|++|++++|+++++|+.   ..+|+.|++++|.++.++..   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            4577777777777776642   35677777777777766643   34667777777766655431   134777777777


Q ss_pred             cCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcc
Q 009136          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (542)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (542)
                      .+..+|. ++.+++|++++++++.+...+..   ...+..+.+..+......  .+..++.++.+.+.++....+
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~--~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSC
T ss_pred             ccccccc-hhhhccceeeccccccccccccc---cccccchhhccccccccc--cccccccceeccccccccccc
Confidence            7666653 45666777777766666544332   234445555443332221  144445555555555554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.2e-21  Score=176.11  Aligned_cols=218  Identities=27%  Similarity=0.355  Sum_probs=119.7

Q ss_pred             eeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcchH-hhhCC
Q 009136           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGEL   90 (542)
Q Consensus        13 ~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l~~-~~~~l   90 (542)
                      .+++++.+++++|..+.               +++++|++++|.++.+|. +|.++++|++|+++++.+..++. .+..+
T Consensus        15 ~v~c~~~~L~~iP~~ip---------------~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~   79 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL   79 (284)
T ss_dssp             EEECCSSCCSSCCTTCC---------------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             EEEcCCCCCCccCCCCC---------------CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccc
Confidence            35555666666665542               235666666666655542 45556666666666655554422 44445


Q ss_pred             CCCcEEecCC-CccccC-CccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136           91 HMLKSLDVSF-NSIMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (542)
Q Consensus        91 ~~L~~L~l~~-~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  168 (542)
                      ..++.+.... +.++.+ +..+.++++|++|++++|.+..++.                      ..+....+|+.++++
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~----------------------~~~~~~~~L~~l~l~  137 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP----------------------GLFRGLAALQYLYLQ  137 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECC
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccc----------------------cccchhcccchhhhc
Confidence            5555554432 234333 3334555555555555554443322                      123444555555555


Q ss_pred             CCcccccchhhhhccccCcEEEcCCcccCccc-cccCCCCcccEEEccCCCCccC-CCCCcCCCCCcEEEcCCCcCcccc
Q 009136          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP  246 (542)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~  246 (542)
                      +|.++.++...|+.+++|++|++++|.++.++ .++..+++|+.+.+.+|++..+ |..+..+++|+++++++|.+..++
T Consensus       138 ~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            55555555444555555555555555555443 3455566666666666666543 455666667777777777666553


Q ss_pred             -hhccCCCCccEEEcCCCcCcc
Q 009136          247 -AELGKLSKLGTLDLHSNQLKE  267 (542)
Q Consensus       247 -~~~~~~~~L~~L~l~~~~i~~  267 (542)
                       ..+..+++|++|++++|.+..
T Consensus       218 ~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         218 TEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             HHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccccccccCEEEecCCCCCC
Confidence             456667777777777776654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=4.2e-18  Score=162.06  Aligned_cols=94  Identities=32%  Similarity=0.368  Sum_probs=53.3

Q ss_pred             CCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCc
Q 009136           69 LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC  148 (542)
Q Consensus        69 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  148 (542)
                      ++++|+++++.++++|+.   .++|++|++++|.++.+|+.+   .+|+.|++++|+++.++..   .+.|++|++++|.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~  109 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ  109 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccc
Confidence            566777777777666642   356677777776666666542   3566666666666554421   1245555555555


Q ss_pred             cccCCcccccCCCccEEEccCCcc
Q 009136          149 ITSLPEDLADCSKMSKLDVEGNKL  172 (542)
Q Consensus       149 ~~~l~~~~~~~~~L~~L~l~~~~~  172 (542)
                      +..++. ++.+++|++|+++++.+
T Consensus       110 l~~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         110 LEKLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CSSCCC-CTTCTTCCEEECCSSCC
T ss_pred             cccccc-hhhhccceeeccccccc
Confidence            555542 34455555555554443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.8e-20  Score=168.95  Aligned_cols=217  Identities=24%  Similarity=0.322  Sum_probs=158.2

Q ss_pred             EEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH-hhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCC
Q 009136           49 KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK  127 (542)
Q Consensus        49 ~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  127 (542)
                      .++.+++.++.+|..+.  +++++|+|++|+++++|. +|..+++|++|+++++.+..++.                   
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-------------------   73 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-------------------   73 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-------------------
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-------------------
Confidence            44556666666665443  345666666666665543 45555556666555555553322                   


Q ss_pred             cCCccccCCCCCCeEEcc-CCccccC-CcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCccc-cccC
Q 009136          128 ELPSSLGRCLNLSDFKAS-NNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIG  204 (542)
Q Consensus       128 ~~~~~~~~~~~L~~L~l~-~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~  204 (542)
                         ..+...+.++++... .+.+..+ +..+..+++|++|+++++.+..+....+....+|+.+++++|.++.++ ..+.
T Consensus        74 ---~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~  150 (284)
T d1ozna_          74 ---AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR  150 (284)
T ss_dssp             ---TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ---ccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhc
Confidence               122334444444432 2233333 334777888999999999888888888899999999999999999886 5678


Q ss_pred             CCCcccEEEccCCCCccCC-CCCcCCCCCcEEEcCCCcCccc-chhccCCCCccEEEcCCCcCcccchhhhc--ccccEE
Q 009136          205 SLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVL  280 (542)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~--~~L~~l  280 (542)
                      .+++|+.|++.+|.+..++ ..+.++++|+.+++++|.+..+ |..+..+++|++|++++|.+..++...+.  .+|+++
T Consensus       151 ~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             cccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEE
Confidence            8999999999999998764 5788999999999999999966 78899999999999999999988766543  349999


Q ss_pred             EccCCCCCC
Q 009136          281 DLSNNSLSG  289 (542)
Q Consensus       281 ~l~~~~l~~  289 (542)
                      ++++|++..
T Consensus       231 ~l~~N~l~C  239 (284)
T d1ozna_         231 RLNDNPWVC  239 (284)
T ss_dssp             ECCSSCEEC
T ss_pred             EecCCCCCC
Confidence            999997764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-20  Score=186.97  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             hhceeeccCCcccccc-hhhhhccccCCCCCceeeecCCcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCCcc
Q 009136           10 TSGSLNLSNRSLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSEL   83 (542)
Q Consensus        10 ~l~~l~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~~l   83 (542)
                      ++++||++++++++.. ..++..            ++++++|+|++|.++     .++.++..+++|+.|++++|.++..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~------------l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~   70 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV   70 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH
T ss_pred             CCCEEEeeCCcCChHHHHHHHHh------------CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH
Confidence            5678888888887532 223333            677888888888776     4556678888888888888877632


Q ss_pred             -----hHhhh-CCCCCcEEecCCCcccc-----CCccccccCCccEEEcCCCcCC
Q 009136           84 -----PAAIG-ELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLK  127 (542)
Q Consensus        84 -----~~~~~-~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~  127 (542)
                           ...+. ...+|++|++++|.++.     ++..+..+++|++|++++|.+.
T Consensus        71 ~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          71 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence                 22222 23468888888887763     3445667778888888887765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.1e-20  Score=181.71  Aligned_cols=372  Identities=20%  Similarity=0.200  Sum_probs=198.3

Q ss_pred             CCcEEecCCCcccc--CCccccccCCccEEEcCCCcCC-----cCCccccCCCCCCeEEccCCcccc-----CCccccc-
Q 009136           92 MLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITS-----LPEDLAD-  158 (542)
Q Consensus        92 ~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~-  158 (542)
                      +|++||+++++++.  +.+.+..++++++|++++|.++     .++..+..+++|++|++++|.++.     +...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            57777787777763  3444566777777777777765     233445667777777777776642     2222222 


Q ss_pred             CCCccEEEccCCcccccchh----hhhccccCcEEEcCCcccCcc-----ccccCCCCcccEEEccCCCCccCCCCCcCC
Q 009136          159 CSKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNGM-----PETIGSLSRLIRLDLHQNRILSIPSSISGC  229 (542)
Q Consensus       159 ~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  229 (542)
                      ..+|++|++++|.+++....    ++..+++|++|++++|.++..     ...+..                      ..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~----------------------~~  140 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLD----------------------PQ  140 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTS----------------------TT
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccc----------------------cc
Confidence            24677777777766644322    234455666666666655321     111100                      01


Q ss_pred             CCCcEEEcCCCcCc-----ccchhccCCCCccEEEcCCCcCcccchh-------hhcccccEEEccCCCCCCC-----Ch
Q 009136          230 CSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE-------ACQLRLSVLDLSNNSLSGL-----PP  292 (542)
Q Consensus       230 ~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~i~~~~~~-------~~~~~L~~l~l~~~~l~~l-----~~  292 (542)
                      ..............     .+...+...+.++.++++.+........       ........+++..+.+...     ..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  220 (460)
T d1z7xw1         141 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG  220 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence            11112222222111     1112233345555555555544321110       0111244555555443321     12


Q ss_pred             hhcCcCCCcEEEcCCCccccccccccCCCcHHHHHHHhhcCCCCCccccccchhhhhhhhhcccccccEEEecCCCCCCC
Q 009136          293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI  372 (542)
Q Consensus       293 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~  372 (542)
                      .+.....++.+.+.++.+...                              ...............++.++++++.+...
T Consensus       221 ~l~~~~~~~~l~~~~n~~~~~------------------------------~~~~~~~~~~~~~~~l~~l~l~~n~i~~~  270 (460)
T d1z7xw1         221 IVASKASLRELALGSNKLGDV------------------------------GMAELCPGLLHPSSRLRTLWIWECGITAK  270 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHH------------------------------HHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             cccccccccccchhhcccccc------------------------------ccchhhccccccccccccccccccccccc
Confidence            234456666777666653211                              00111122223344566777777665422


Q ss_pred             -----CccccccCCccEEECCCCcccc-----cChhc-ccCccCcEEEccCCcCCCCChhhh----hCCCCCcEEEccCC
Q 009136          373 -----PSEIWEAGEITKLDLSRNSIQE-----LPPEL-SSCASLQTLILSRNKIKDWPDAIL----TSLSSLSCLKLDNN  437 (542)
Q Consensus       373 -----~~~~~~~~~L~~L~l~~~~l~~-----l~~~~-~~~~~L~~L~l~~~~l~~~~~~~l----~~l~~L~~L~L~~n  437 (542)
                           ...+...+.++.+++++|.+++     +...+ ...+.|+.+++++|.++......+    ...++|++|+|++|
T Consensus       271 ~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N  350 (460)
T d1z7xw1         271 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  350 (460)
T ss_dssp             HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeee
Confidence                 2233446778888888887653     22222 244578888888888776544433    44568888888888


Q ss_pred             CCcccCCCc----c-CCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCcccc-
Q 009136          438 PLRQVPSDG----F-KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQS-  511 (542)
Q Consensus       438 ~i~~~~~~~----~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-  511 (542)
                      ++.+.+...    + ...+.|++|++++|.++..                  ....++..+..+++|++|++++|.++. 
T Consensus       351 ~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~------------------~~~~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         351 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS------------------SCSSLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH------------------HHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cccCcccchhhhhhhcccCCCCEEECCCCCCChH------------------HHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence            876422111    2 2456788888888876521                  122344556667888888888887762 


Q ss_pred             ----cCcccc-CCCCCCEEECCCCcCC
Q 009136          512 ----IPEGFK-NLTSLTELDLSDNNIS  533 (542)
Q Consensus       512 ----l~~~l~-~~~~L~~L~l~~~~l~  533 (542)
                          +.+.+. +...|+.|++.+|.+.
T Consensus       413 g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         413 GILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHHhCCCccCEEECCCCCCC
Confidence                333444 3346888888888775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=6.6e-18  Score=149.42  Aligned_cols=186  Identities=22%  Similarity=0.319  Sum_probs=100.2

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      +.+|++|++.+|.++.++ .+..+++|++|++++|.+..++ .+..+++|+++++++|.++.++ .+..+++|+.+++++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            445666666666665552 4556666666666666655543 2555566666666655555443 344555555555555


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  203 (542)
                      +....++ .+...+.++.+.                       ++++.+.....  +..+++|++|.+++|.+...+ .+
T Consensus       117 ~~~~~~~-~~~~~~~~~~l~-----------------------~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-~l  169 (227)
T d1h6ua2         117 TQITDVT-PLAGLSNLQVLY-----------------------LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PL  169 (227)
T ss_dssp             SCCCCCG-GGTTCTTCCEEE-----------------------CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GG
T ss_pred             ccccccc-hhccccchhhhh-----------------------chhhhhchhhh--hccccccccccccccccccch-hh
Confidence            5444332 233344444444                       44444333221  344445555555555444333 24


Q ss_pred             CCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchhccCCCCccEEEcC
Q 009136          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH  261 (542)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~  261 (542)
                      .++++|+.|++++|++..++ .+..+++|++|++++|+++.++. +..+++|+.|+++
T Consensus       170 ~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             cccccceecccCCCccCCCh-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            55566666666666655543 25566666666666666666643 5666677776664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.2e-18  Score=152.54  Aligned_cols=188  Identities=18%  Similarity=0.314  Sum_probs=135.0

Q ss_pred             CCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEcc
Q 009136           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~  168 (542)
                      .+.+|++|++.+|.++.++ .+..+++|++|++++|++..+. .+..++++++++++++.++.++ .+..+++|+.+.++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-cccccccccccccc
Confidence            3445555555555555552 3555555555555555555443 2555566666666666555543 45667777777777


Q ss_pred             CCcccccchhhhhccccCcEEEcCCcccCccccccCCCCcccEEEccCCCCccCCCCCcCCCCCcEEEcCCCcCcccchh
Q 009136          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (542)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  248 (542)
                      ++....+..  +...+.+..+.++++.+.... .+..+++|+.+++.+|.+...+ .++.+++|+.|++++|.+..++. 
T Consensus       116 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~-  190 (227)
T d1h6ua2         116 STQITDVTP--LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP-  190 (227)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-
T ss_pred             cccccccch--hccccchhhhhchhhhhchhh-hhccccccccccccccccccch-hhcccccceecccCCCccCCChh-
Confidence            776655433  667788999999998886654 3567889999999999887653 47889999999999999998865 


Q ss_pred             ccCCCCccEEEcCCCcCcccchhhhcccccEEEccC
Q 009136          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN  284 (542)
Q Consensus       249 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~L~~l~l~~  284 (542)
                      +..+++|++|++++|+++.++.......|+.+++++
T Consensus       191 l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             hcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            889999999999999999988766666799999863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.5e-17  Score=139.88  Aligned_cols=159  Identities=23%  Similarity=0.339  Sum_probs=89.4

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      ++++++|+++++.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|.+..++. +.+++.|+.+++++
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cccccccccccccc
Confidence            445667777766666553 45666666666666666665543 6666666666666666655542 55666666666666


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  203 (542)
                      +....++ .+..+++|+.|++++|.+..++ .+..+++++.|++.+|.++.+.+  ++++++|++|++++|.++.++ .+
T Consensus       116 ~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~-~l  190 (199)
T d2omxa2         116 NQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS-VL  190 (199)
T ss_dssp             SCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             ccccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCc-cc
Confidence            6555432 3455556666666665555443 35555555566555555554432  444555555555555544443 23


Q ss_pred             CCCCccc
Q 009136          204 GSLSRLI  210 (542)
Q Consensus       204 ~~~~~L~  210 (542)
                      ..+++|+
T Consensus       191 ~~L~~L~  197 (199)
T d2omxa2         191 AKLTNLE  197 (199)
T ss_dssp             GGCTTCS
T ss_pred             cCCCCCC
Confidence            3344443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.3e-17  Score=141.79  Aligned_cols=163  Identities=23%  Similarity=0.348  Sum_probs=90.1

Q ss_pred             ecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCC
Q 009136           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~  123 (542)
                      +.+|++|+++++.+..++ .+..+++|++|++++|+++.++ .+..+++|++|++++|+++.++ .+..+++|+.|++++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccc
Confidence            345666666666666553 3556666666666666666554 3455666666666666666554 355566666666666


Q ss_pred             CcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEcCCcccCcccccc
Q 009136          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (542)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  203 (542)
                      +.+..++ .+..+++++.++++++.+...+ .+..+++|+++++++|++..+.+  +.++++|++|++++|.++.++ .+
T Consensus       122 ~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~-~l  196 (210)
T d1h6ta2         122 NGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL  196 (210)
T ss_dssp             SCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             ccccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh-hh
Confidence            6555443 3555555666666555554432 34445555555555555554432  444555555555555554443 24


Q ss_pred             CCCCcccEEEc
Q 009136          204 GSLSRLIRLDL  214 (542)
Q Consensus       204 ~~~~~L~~L~l  214 (542)
                      ..+++|+.|++
T Consensus       197 ~~l~~L~~L~L  207 (210)
T d1h6ta2         197 AGLKNLDVLEL  207 (210)
T ss_dssp             TTCTTCSEEEE
T ss_pred             cCCCCCCEEEc
Confidence            44444554444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2e-16  Score=137.48  Aligned_cols=166  Identities=23%  Similarity=0.328  Sum_probs=145.2

Q ss_pred             HHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHh
Q 009136            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (542)
Q Consensus         7 ~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~   86 (542)
                      .+.+++.|+++++.+++++. + +.            +++|++|++++|.++.++ .+..+++|++|++++|.++.++ .
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~-l-~~------------l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG-I-QY------------LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-S  107 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT-G-GG------------CTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-G
T ss_pred             HhcCccEEECcCCCCCCchh-H-hh------------CCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-c
Confidence            46789999999999988764 2 22            789999999999999886 4788999999999999999886 6


Q ss_pred             hhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEE
Q 009136           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (542)
Q Consensus        87 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~  166 (542)
                      +..+++|+.|+++++.+..++ .+..++.++.++++++.+...+ .+..+++|+++++++|.+..++ .+..+++|++|+
T Consensus       108 l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~  184 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLY  184 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccc-cccccccccccccccccccccc-cccCCCCCCEEE
Confidence            889999999999999888764 5888999999999999988754 5778999999999999998875 488999999999


Q ss_pred             ccCCcccccchhhhhccccCcEEEcCC
Q 009136          167 VEGNKLTVLSNNLIASWTMLTELIASK  193 (542)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~  193 (542)
                      +++|.+++++  .+.++++|++|++++
T Consensus       185 Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             CCCCCCCCCh--hhcCCCCCCEEEccC
Confidence            9999999875  389999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.6e-16  Score=135.63  Aligned_cols=163  Identities=23%  Similarity=0.377  Sum_probs=141.4

Q ss_pred             HHHHhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchH
Q 009136            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (542)
Q Consensus         6 ~~~~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~   85 (542)
                      ..+.+++.|++++++|++++. + +.            +++|++|++++|.++.++. +.++++|++|++++|.+..++ 
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~-l-~~------------l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-  100 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDG-V-EY------------LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-  100 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT-G-GG------------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred             HHhcCCCEEECCCCCCCCccc-c-cc------------CCCcCcCccccccccCccc-ccCCccccccccccccccccc-
Confidence            356788999999999988753 2 22            7899999999999998764 899999999999999998876 


Q ss_pred             hhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEE
Q 009136           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL  165 (542)
Q Consensus        86 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  165 (542)
                      .+.++++|+.|+++++....++ .+..+++|+.|++++|++..++ .+..++++++|++.+|.+..++ .+..+++|++|
T Consensus       101 ~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L  177 (199)
T d2omxa2         101 PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERL  177 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred             cccccccccccccccccccccc-ccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEE
Confidence            5889999999999999887664 5788999999999999998775 6889999999999999998875 58899999999


Q ss_pred             EccCCcccccchhhhhccccCcEE
Q 009136          166 DVEGNKLTVLSNNLIASWTMLTEL  189 (542)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L  189 (542)
                      ++++|++++++.  ++++++|++|
T Consensus       178 ~ls~N~i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVSDISV--LAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             ECCCCCCCCCcc--ccCCCCCCcC
Confidence            999999998753  7888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-16  Score=140.35  Aligned_cols=190  Identities=17%  Similarity=0.234  Sum_probs=96.8

Q ss_pred             CCcEEEcCCCcccchhH-hhcCCCCCcEEEcCCCCCCcc--hHhhhCCCCCcEEecCC-CccccCCccccccCCccEEEc
Q 009136           46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSF-NSIMKIPDEIGSATALVKFDC  121 (542)
Q Consensus        46 ~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~l--~~~~~~l~~L~~L~l~~-~~~~~l~~~~~~l~~L~~L~l  121 (542)
                      ++++|++++|.++.++. +|.++++|++|++++|.+...  +.+|..+++++++.+.. +.+..+               
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~---------------   94 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI---------------   94 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE---------------
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc---------------
Confidence            35555555555554443 345555555555555544432  12344444444444432 223222               


Q ss_pred             CCCcCCcCCccccCCCCCCeEEccCCccccCCc--ccccCCCccEEEccCCcccccchhhhhccc-cCcEEEcCCcccCc
Q 009136          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLNG  198 (542)
Q Consensus       122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~  198 (542)
                             .+..+.++++|++++++++.+...+.  .+.....+..+...++.+..+....+.+++ .++.+++.++.++.
T Consensus        95 -------~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          95 -------NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             -------CTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             -------ccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence                   12234444555555555554443322  123334445555555556665555555543 56666777776666


Q ss_pred             cccccCCCCcccEE-EccCCCCccCCC-CCcCCCCCcEEEcCCCcCcccchh-ccCCCCccE
Q 009136          199 MPETIGSLSRLIRL-DLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAE-LGKLSKLGT  257 (542)
Q Consensus       199 ~~~~~~~~~~L~~L-~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~  257 (542)
                      ++.......+++.+ .+.+|.++.++. .+.++++|+.|++++|.+..+|.. +.++++|+.
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            65544444554444 345566666654 356777777777777777766542 334444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-16  Score=141.48  Aligned_cols=194  Identities=20%  Similarity=0.269  Sum_probs=140.1

Q ss_pred             HhhceeeccCCcccccchhhhhccccCCCCCceeeecCCcEEEcCCCcccc-hh-HhhcCCCCCcEEEcCC-CCCCcc-h
Q 009136            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LK-EDLRNLPLLTVLNVSH-NKLSEL-P   84 (542)
Q Consensus         9 ~~l~~l~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-l~-~~l~~~~~L~~L~l~~-~~~~~l-~   84 (542)
                      +++++||++++.|+.+|...|.+            +++|++|++++|.+.. ++ .+|..++.++++.+.. +.+..+ +
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~------------l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSG------------FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTT------------CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCEEECcCCcCCccChhHhhc------------cchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            35778888888888888776665            7889999999998864 43 4688999999999765 466655 4


Q ss_pred             HhhhCCCCCcEEecCCCccccCCc--cccccCCccEEEcCCCcCCcCC-ccccCC-CCCCeEEccCCccccCCcccccCC
Q 009136           85 AAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKELP-SSLGRC-LNLSDFKASNNCITSLPEDLADCS  160 (542)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~-~~~~~~-~~L~~L~l~~~~~~~l~~~~~~~~  160 (542)
                      ..|..+++|++++++++.+...+.  .+..+..+..+...++.+..++ ..+..+ ..++.++++++.+..++.......
T Consensus        97 ~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~  176 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT  176 (242)
T ss_dssp             TSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTC
T ss_pred             ccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccch
Confidence            578999999999999998886643  2445666666677777777654 334443 377788888888887776666666


Q ss_pred             CccEEE-ccCCcccccchhhhhccccCcEEEcCCcccCcccc-ccCCCCcccEEEc
Q 009136          161 KMSKLD-VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDL  214 (542)
Q Consensus       161 ~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l  214 (542)
                      ++..+. +.++.++.++...|.++++|++|++++|.++.+|. .+.+++.|+.+++
T Consensus       177 ~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             hhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            666554 46667777777777777888888888877777654 3455555554444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1e-16  Score=137.37  Aligned_cols=175  Identities=20%  Similarity=0.229  Sum_probs=135.1

Q ss_pred             cccEEEecCCCCCCCCccccccCCccEEECCCCcccc-cC-hhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEcc
Q 009136          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (542)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~  435 (542)
                      ..+++++++.+++.+|..+  ++++++|++++|.++. ++ ..|.++++|++|++++|.+..++...+..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3467899999999999876  4789999999999975 43 357899999999999999999999999999999999999


Q ss_pred             CCCCcccCCCccCCCCCCceEecCCCcCCCCCCCCCCCCchhHHHHH-hhccccCchhhhcCCCCCEEeCCCCccc-ccC
Q 009136          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL-RMQLREAPTDILRLQQLRILDLSQNSLQ-SIP  513 (542)
Q Consensus       436 ~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~l~~~~~L~~L~l~~~~l~-~l~  513 (542)
                      +|++..+++.+|.++++|++|++++|+++.+.+..|..+++|+++++ .+.+........-...++.+.+..+.++ ..|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            99999999999999999999999999999988888888888888777 5544433322222223445555555555 234


Q ss_pred             ccccCCCCCCEEECCCCcCCcCCC
Q 009136          514 EGFKNLTSLTELDLSDNNISALPP  537 (542)
Q Consensus       514 ~~l~~~~~L~~L~l~~~~l~~lp~  537 (542)
                      .   .+..++.++++.+.+.=.++
T Consensus       167 ~---~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         167 S---KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             T---TTTTSBGGGSCTTTCCCCCC
T ss_pred             h---hhcCCEeeecCHhhCcCCCC
Confidence            3   34456667777777653333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=3.3e-15  Score=127.70  Aligned_cols=128  Identities=25%  Similarity=0.351  Sum_probs=98.3

Q ss_pred             CccEEECCCCcccccChhcccCccCcEEEccCCcCCC-CChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecC
Q 009136          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (542)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~  459 (542)
                      +.+.++.++++++.+|..+.  +++++|++++|.++. .....|.++++|++|++++|.+..+....|..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            35689999999999997653  689999999999986 667788999999999999999999998899999999999999


Q ss_pred             CCcCCCCCCCCCCCCchhHHHHH-hhccccCchh-hhcCCCCCEEeCCCCccc
Q 009136          460 YNIASLPENPPFSSLPHLQELYL-RMQLREAPTD-ILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       460 ~n~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~-l~~~~~L~~L~l~~~~l~  510 (542)
                      +|++..+.+.+|.++++|++|++ .+.+..++.. +..+++|+++++++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            99999888777777655555544 4444444332 344444455555444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.7e-14  Score=112.84  Aligned_cols=81  Identities=27%  Similarity=0.350  Sum_probs=34.8

Q ss_pred             cCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCC--ccccccCCccEEEcC
Q 009136           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP--DEIGSATALVKFDCS  122 (542)
Q Consensus        45 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~  122 (542)
                      ++|++|++++|.++.+|..+..+++|+.|++++|.+++++ .+..+++|++|++++|.++.++  ..+..+++|++++++
T Consensus        20 ~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECC
Confidence            3444444444444444444444444444444444444443 2444444444444444444332  123334444444444


Q ss_pred             CCcC
Q 009136          123 SNQL  126 (542)
Q Consensus       123 ~~~~  126 (542)
                      +|.+
T Consensus        99 ~N~i  102 (124)
T d1dcea3          99 GNSL  102 (124)
T ss_dssp             TSGG
T ss_pred             CCcC
Confidence            4433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.4e-15  Score=121.80  Aligned_cols=125  Identities=22%  Similarity=0.214  Sum_probs=89.8

Q ss_pred             eeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCcc-ccccCCccEE
Q 009136           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKF  119 (542)
Q Consensus        41 ~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L  119 (542)
                      |.++.++|+|++++|.|+.++..+..+++|++|++++|.+.+++ .+..+++|++|++++|.++.++.. +..+++|++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            34466788888888888877766677788888888888887773 467778888888888888777654 4567888888


Q ss_pred             EcCCCcCCcCC--ccccCCCCCCeEEccCCccccCCc----ccccCCCccEEE
Q 009136          120 DCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLD  166 (542)
Q Consensus       120 ~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~  166 (542)
                      ++++|++..++  ..+..+++|++|++++|.+...+.    .+..+++|++|+
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888777654  245667777777777777665543    255566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.9e-14  Score=111.39  Aligned_cols=80  Identities=31%  Similarity=0.459  Sum_probs=39.2

Q ss_pred             cEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCC
Q 009136           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK  127 (542)
Q Consensus        48 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  127 (542)
                      |+|++++|.++.++ .+..+++|++|++++|.++++|..+..+++|++|++++|.++.++ .+..+++|++|++++|++.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            34555555555443 244455555555555555555444445555555555555554443 2444445555555554444


Q ss_pred             cC
Q 009136          128 EL  129 (542)
Q Consensus       128 ~~  129 (542)
                      .+
T Consensus        79 ~~   80 (124)
T d1dcea3          79 QS   80 (124)
T ss_dssp             SS
T ss_pred             CC
Confidence            33

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=132.60  Aligned_cols=76  Identities=21%  Similarity=0.253  Sum_probs=43.0

Q ss_pred             EEEcCCcccCccccccCCCCcccEEEccCCCCc--cCCCCCcCCCCCcEEEcCCCcCc-ccchhccCCCCccEEEcCCC
Q 009136          188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSN  263 (542)
Q Consensus       188 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~  263 (542)
                      .+.+................+|++|+++++.+.  .+...+..+++|++|+++++.+. ..+..+..+++|++|++++|
T Consensus        27 ~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          27 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             EeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            444444433322222233456777777766654  23334566777777777777665 33455666677777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.54  E-value=6.1e-15  Score=139.01  Aligned_cols=223  Identities=17%  Similarity=0.171  Sum_probs=131.3

Q ss_pred             ecCCcEEEcCCCccc-----chhHhhcCCCCCcEEEcCCCCCCc-----------chHhhhCCCCCcEEecCCCcccc--
Q 009136           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----------LPAAIGELHMLKSLDVSFNSIMK--  105 (542)
Q Consensus        44 ~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~~~~-----------l~~~~~~l~~L~~L~l~~~~~~~--  105 (542)
                      ..++++|++++|.+.     .+.+.+..+++|+.++++++....           +...+..+++|++|++++|.+..  
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            567788888877664     344566777788888887664431           22345667778888888776653  


Q ss_pred             ---CCccccccCCccEEEcCCCcCCc-----CCc---------cccCCCCCCeEEccCCccc-----cCCcccccCCCcc
Q 009136          106 ---IPDEIGSATALVKFDCSSNQLKE-----LPS---------SLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMS  163 (542)
Q Consensus       106 ---l~~~~~~l~~L~~L~l~~~~~~~-----~~~---------~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~  163 (542)
                         +...+..+++|++|++++|.+..     +..         .....+.|+.+.++++.+.     .+...+..+++|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               33344567778888888776541     111         1134567888888887665     2333456778888


Q ss_pred             EEEccCCcccccc-----hhhhhccccCcEEEcCCcccCc-----cccccCCCCcccEEEccCCCCcc-----CCCCCc-
Q 009136          164 KLDVEGNKLTVLS-----NNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSIS-  227 (542)
Q Consensus       164 ~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~-  227 (542)
                      .|++++|.+....     ...+..+++|+.|++++|.++.     +...+..++.|+.|++++|.+..     +...+. 
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            8888888876422     1224555667777777666532     33345556666666666666541     111121 


Q ss_pred             -CCCCCcEEEcCCCcCcc-----cchhcc-CCCCccEEEcCCCcCc
Q 009136          228 -GCCSLAEFYMGNNALSA-----LPAELG-KLSKLGTLDLHSNQLK  266 (542)
Q Consensus       228 -~~~~L~~l~l~~~~~~~-----~~~~~~-~~~~L~~L~l~~~~i~  266 (542)
                       ..+.|++|++++|.+..     +...+. +.++|++|++++|.+.
T Consensus       270 ~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence             22445666666665541     222232 3455566666555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=132.30  Aligned_cols=122  Identities=16%  Similarity=0.247  Sum_probs=66.6

Q ss_pred             ceeeccCCccc-ccchhhhhccccCCCCCceeeecCCcEEEcCCCcccchhHhhcCCCCCcEEEcCCCCCCc--chHhhh
Q 009136           12 GSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAAIG   88 (542)
Q Consensus        12 ~~l~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~--l~~~~~   88 (542)
                      +.+|++++.+. ++...++.              ..+..+.+.+..+............|++|++++|.+..  +...+.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--------------~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~   68 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--------------QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS   68 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--------------TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT
T ss_pred             CEEECCCCCCCchHHHHHHh--------------ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHH
Confidence            46888887664 33333322              13455555554443222223344567777777776652  344566


Q ss_pred             CCCCCcEEecCCCccc-cCCccccccCCccEEEcCCCc-CCc--CCccccCCCCCCeEEccCC
Q 009136           89 ELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQ-LKE--LPSSLGRCLNLSDFKASNN  147 (542)
Q Consensus        89 ~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~~~L~~L~l~~~  147 (542)
                      ++++|++|+++++.+. ..+..+..+++|++|++++|. +++  +......+++|++|++++|
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            6777777777777655 233445666677777776653 331  1122344566666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=1.1e-14  Score=137.37  Aligned_cols=235  Identities=20%  Similarity=0.177  Sum_probs=130.3

Q ss_pred             chhHhhcCCCCCcEEEcCCCCCC-----cchHhhhCCCCCcEEecCCCccccC-----------CccccccCCccEEEcC
Q 009136           59 KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMKI-----------PDEIGSATALVKFDCS  122 (542)
Q Consensus        59 ~l~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~l-----------~~~~~~l~~L~~L~l~  122 (542)
                      .+..++.....|+.|++++|.+.     .+...+...++|+.++++++.....           ...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            56677888889999999988776     2344567778899999887654322           1234456777777777


Q ss_pred             CCcCCc-----CCccccCCCCCCeEEccCCccccC-----Cc---------ccccCCCccEEEccCCcccccchhhhhcc
Q 009136          123 SNQLKE-----LPSSLGRCLNLSDFKASNNCITSL-----PE---------DLADCSKMSKLDVEGNKLTVLSNNLIASW  183 (542)
Q Consensus       123 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~l-----~~---------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  183 (542)
                      +|.+..     +...+...++|++|++++|.+...     ..         .....+.|+.+.++++.+.......    
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~----  177 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE----  177 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc----
Confidence            776653     223344556666776666654310     00         0123345555555555444322211    


Q ss_pred             ccCcEEEcCCcccCccccccCCCCcccEEEccCCCCcc------CCCCCcCCCCCcEEEcCCCcCc-----ccchhccCC
Q 009136          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS------IPSSISGCCSLAEFYMGNNALS-----ALPAELGKL  252 (542)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~  252 (542)
                                     +...+...+.|+.+++++|.+..      +...+..+++|+.|++++|.++     .+...+..+
T Consensus       178 ---------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~  242 (344)
T d2ca6a1         178 ---------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  242 (344)
T ss_dssp             ---------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             ---------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc
Confidence                           12223334445555555554431      1233445556666666666554     133445556


Q ss_pred             CCccEEEcCCCcCcccchhhh--------cccccEEEccCCCCCC-----CChhhc-CcCCCcEEEcCCCcccc
Q 009136          253 SKLGTLDLHSNQLKEYCVEAC--------QLRLSVLDLSNNSLSG-----LPPEIG-KMTTLRKLLLTGNPLRT  312 (542)
Q Consensus       253 ~~L~~L~l~~~~i~~~~~~~~--------~~~L~~l~l~~~~l~~-----l~~~l~-~~~~L~~L~l~~~~~~~  312 (542)
                      ++|++|++++|.++.......        ...+++|++++|.++.     +...+. ++++|+.+++++|.+..
T Consensus       243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            666666666666553211111        1236667777666544     223342 56788888998888753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4e-14  Score=116.48  Aligned_cols=108  Identities=20%  Similarity=0.219  Sum_probs=48.9

Q ss_pred             ccCCccEEEcCCCcCCcCCccccCCCCCCeEEccCCccccCCcccccCCCccEEEccCCcccccchhhhhccccCcEEEc
Q 009136          112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA  191 (542)
Q Consensus       112 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  191 (542)
                      +..++++|++++|+++.++..+..+++|++|++++|.+..++ .+..+++|++|++++|++..++...+..+++|++|++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            344444444444444444433334444444444444444442 3444455555555555555544444444445555555


Q ss_pred             CCcccCcccc--ccCCCCcccEEEccCCCCc
Q 009136          192 SKNLLNGMPE--TIGSLSRLIRLDLHQNRIL  220 (542)
Q Consensus       192 ~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~  220 (542)
                      ++|.+..+++  .+..+++|+.+++.+|.+.
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccccccccccccccccccchhhcCCCccc
Confidence            5544443331  2333344444444444433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=7.3e-15  Score=125.55  Aligned_cols=128  Identities=28%  Similarity=0.323  Sum_probs=86.4

Q ss_pred             cCCcEEEcCCC--cccchhHhhcCCCCCcEEEcCCCCCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcC
Q 009136           45 VDLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (542)
Q Consensus        45 ~~L~~L~l~~~--~~~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~  122 (542)
                      ...+.+.+.+.  .++.++.++..+++|++|++++|.++.++ .+..+++|++|++++|.++.++..+..+++|++|+++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECS
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccc
Confidence            44556666554  35566677777777777777777777664 4667777777777777777776655556677777777


Q ss_pred             CCcCCcCCccccCCCCCCeEEccCCccccCC--cccccCCCccEEEccCCcccc
Q 009136          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTV  174 (542)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~  174 (542)
                      +|+++.++ .+..+++|++|++++|.+..++  ..+..+++|+.|++++|++..
T Consensus       102 ~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            77776653 4566667777777777766554  246666777777777766553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=5.5e-14  Score=119.99  Aligned_cols=127  Identities=21%  Similarity=0.246  Sum_probs=84.7

Q ss_pred             CCcEEEcCCC--CCCcchHhhhCCCCCcEEecCCCccccCCccccccCCccEEEcCCCcCCcCCccccCCCCCCeEEccC
Q 009136           69 LLTVLNVSHN--KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN  146 (542)
Q Consensus        69 ~L~~L~l~~~--~~~~l~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  146 (542)
                      ..+.+++.+.  .+..++.++..+++|++|++++|.++.++ .+..+++|++|++++|.++.++.....+++|++|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            4555666543  45567778888888888888888888775 47778888888888888777765445555677777777


Q ss_pred             CccccCCcccccCCCccEEEccCCcccccch-hhhhccccCcEEEcCCcccC
Q 009136          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN  197 (542)
Q Consensus       147 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  197 (542)
                      |.+..++ .+..+++|++|++++|.++.+.. ..+..+++|+.|++++|.+.
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            7666552 35556666666666666665543 33555666666666666553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.3e-11  Score=97.31  Aligned_cols=105  Identities=21%  Similarity=0.169  Sum_probs=93.2

Q ss_pred             ccEEEecCCCCCCCCccccccCCccEEECCCC-cccccCh-hcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccC
Q 009136          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (542)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~  436 (542)
                      ...+++.+.+....|..+...+++++|++.++ .++.++. +|.++++|+.|++++|+++.+++.+|.++++|++|+|++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            45688888888888888888999999999876 5888875 589999999999999999999999999999999999999


Q ss_pred             CCCcccCCCccCCCCCCceEecCCCcCC
Q 009136          437 NPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (542)
Q Consensus       437 n~i~~~~~~~~~~~~~L~~L~l~~n~~~  464 (542)
                      |++..++...|... +|++|++++|.+.
T Consensus        90 N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CCCcccChhhhccc-cccccccCCCccc
Confidence            99999988877654 7999999999774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.5e-11  Score=96.68  Aligned_cols=109  Identities=24%  Similarity=0.248  Sum_probs=93.4

Q ss_pred             cCCccEEECCCCcccccChhcccCccCcEEEccCC-cCCCCChhhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEe
Q 009136          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD  457 (542)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~  457 (542)
                      +...+.+++.++++...|..+..+++|++|+++++ .++.++...|.++++|+.|++++|+++.+...+|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            44567789999998888888889999999999876 59999999999999999999999999999999999999999999


Q ss_pred             cCCCcCCCCCCCCCCCCchhHHHHHhhccccCchhhhcCCCCCEEeCCCCccc
Q 009136          458 LSYNIASLPENPPFSSLPHLQELYLRMQLREAPTDILRLQQLRILDLSQNSLQ  510 (542)
Q Consensus       458 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~l~  510 (542)
                      +++|+++.+....|.                       ..+|+.|++++|++.
T Consensus        87 Ls~N~l~~l~~~~~~-----------------------~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALESLSWKTVQ-----------------------GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSCCCSTTTC-----------------------SCCCCEEECCSSCCC
T ss_pred             ccCCCCcccChhhhc-----------------------cccccccccCCCccc
Confidence            999999876554443                       245788888888764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.25  E-value=3.5e-07  Score=74.65  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=51.1

Q ss_pred             cCCcEEEcCCC-ccc-----chhHhhcCCCCCcEEEcCCCCCC-----cchHhhhCCCCCcEEecCCCccc-----cCCc
Q 009136           45 VDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPD  108 (542)
Q Consensus        45 ~~L~~L~l~~~-~~~-----~l~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~~  108 (542)
                      ++|++|+++++ .+.     .+..++...++|++|++++|.+.     .+...+...+.|++|++++|.+.     .+..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            45555555542 233     23344555555555555555554     22334445555666666555554     1223


Q ss_pred             cccccCCccEEEcCCCcCCc--------CCccccCCCCCCeEEccCC
Q 009136          109 EIGSATALVKFDCSSNQLKE--------LPSSLGRCLNLSDFKASNN  147 (542)
Q Consensus       109 ~~~~l~~L~~L~l~~~~~~~--------~~~~~~~~~~L~~L~l~~~  147 (542)
                      .+...+.|++|+++++.+..        +...+...+.|++|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            34455556666665554332        2233344556666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.19  E-value=9.1e-07  Score=72.06  Aligned_cols=106  Identities=16%  Similarity=0.188  Sum_probs=50.7

Q ss_pred             cCCCCCcEEEcCCC-CCC-----cchHhhhCCCCCcEEecCCCccc-----cCCccccccCCccEEEcCCCcCC-----c
Q 009136           65 RNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK-----E  128 (542)
Q Consensus        65 ~~~~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~  128 (542)
                      .+.+.|++|+++++ .+.     .+..++...++|++|++++|.+.     .+...+...+.|++|++++|.+.     .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34455666666543 233     12224455555666666555544     22223444555666666555554     1


Q ss_pred             CCccccCCCCCCeEEccCCcccc--------CCcccccCCCccEEEccCC
Q 009136          129 LPSSLGRCLNLSDFKASNNCITS--------LPEDLADCSKMSKLDVEGN  170 (542)
Q Consensus       129 ~~~~~~~~~~L~~L~l~~~~~~~--------l~~~~~~~~~L~~L~l~~~  170 (542)
                      +...+...+.|++|+++++.+..        +...+...++|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22344445556666655543332        2222344555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.7e-07  Score=74.08  Aligned_cols=80  Identities=29%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             ccCCccEEECCCCcccccC---hhcccCccCcEEEccCCcCCCCChhhhhCCCCCcEEEccCCCCcccCCC-------cc
Q 009136          378 EAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD-------GF  447 (542)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-------~~  447 (542)
                      .+++|++|++++|.++.++   ..+..+++|+.|++++|.++++......+...|+.|++.+|++......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            3567777777777776654   2356677777777777777776654444556677777777777643321       13


Q ss_pred             CCCCCCceEe
Q 009136          448 KDIPMLQILD  457 (542)
Q Consensus       448 ~~~~~L~~L~  457 (542)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            5567777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.8e-08  Score=82.05  Aligned_cols=72  Identities=25%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             cChhcccCccCcEEEccCCcCCCCCh--hhhhCCCCCcEEEccCCCCcccCCCccCCCCCCceEecCCCcCCCC
Q 009136          395 LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP  466 (542)
Q Consensus       395 l~~~~~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~  466 (542)
                      ++..+..+++|++|++++|+++++..  ..+..+++|+.|++++|.++++....+....+|+.+++++|.+...
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            44445689999999999999998753  4578899999999999999988764455567899999999988643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.97  E-value=2.3e-06  Score=69.71  Aligned_cols=105  Identities=23%  Similarity=0.277  Sum_probs=60.0

Q ss_pred             ecCCcEEEcCC-Cccc-----chhHhhcCCCCCcEEEcCCCCCC-----cchHhhhCCCCCcEEecCCCccc-----cCC
Q 009136           44 AVDLQKLILAH-NNIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (542)
Q Consensus        44 ~~~L~~L~l~~-~~~~-----~l~~~l~~~~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~  107 (542)
                      .++|++|++++ +.++     .+..++..+++|++|++++|.+.     .+...+...+.++.++++++.+.     .+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            45666666665 3343     34455666667777777776665     23334555666777777666554     233


Q ss_pred             ccccccCCccEEEcC--CCcCC-----cCCccccCCCCCCeEEccCCc
Q 009136          108 DEIGSATALVKFDCS--SNQLK-----ELPSSLGRCLNLSDFKASNNC  148 (542)
Q Consensus       108 ~~~~~l~~L~~L~l~--~~~~~-----~~~~~~~~~~~L~~L~l~~~~  148 (542)
                      ..+...++|+.+++.  ++.+.     .+...+...++|++|+++.+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            445566666665553  33443     233445566777777776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.87  E-value=8.5e-06  Score=66.16  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             hHhhcCCCCCcEEEcCCC-CCC-----cchHhhhCCCCCcEEecCCCccc-----cCCccccccCCccEEEcCCCcCC--
Q 009136           61 KEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK--  127 (542)
Q Consensus        61 ~~~l~~~~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~--  127 (542)
                      .+...+.+.|++|+++++ .++     .+..++..+++|++|++++|.+.     .+...+...+.++.++++++.+.  
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            334456677777777763 454     23345566777777777777665     23344556677777777777665  


Q ss_pred             ---cCCccccCCCCCCeEEcc--CCccc-----cCCcccccCCCccEEEccCCc
Q 009136          128 ---ELPSSLGRCLNLSDFKAS--NNCIT-----SLPEDLADCSKMSKLDVEGNK  171 (542)
Q Consensus       128 ---~~~~~~~~~~~L~~L~l~--~~~~~-----~l~~~~~~~~~L~~L~l~~~~  171 (542)
                         .+...+...++|+.+++.  ++.+.     .+...+..+++|++|+++.+.
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence               233456666777765554  33443     334445667777777776554