Citrus Sinensis ID: 009160
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 541 | 2.2.26 [Sep-21-2011] | |||||||
| Q9CAP8 | 691 | Long chain acyl-CoA synth | yes | no | 0.968 | 0.758 | 0.773 | 0.0 | |
| Q9SJD4 | 720 | Long chain acyl-CoA synth | no | no | 0.940 | 0.706 | 0.627 | 0.0 | |
| O60488 | 711 | Long-chain-fatty-acid--Co | yes | no | 0.946 | 0.720 | 0.461 | 1e-128 | |
| Q63151 | 720 | Long-chain-fatty-acid--Co | yes | no | 0.944 | 0.709 | 0.463 | 1e-126 | |
| Q5R668 | 720 | Long-chain-fatty-acid--Co | no | no | 0.946 | 0.711 | 0.458 | 1e-126 | |
| O95573 | 720 | Long-chain-fatty-acid--Co | no | no | 0.946 | 0.711 | 0.456 | 1e-126 | |
| Q9QUJ7 | 711 | Long-chain-fatty-acid--Co | yes | no | 0.955 | 0.727 | 0.459 | 1e-126 | |
| Q9CZW4 | 720 | Long-chain-fatty-acid--Co | no | no | 0.944 | 0.709 | 0.459 | 1e-125 | |
| O35547 | 670 | Long-chain-fatty-acid--Co | no | no | 0.896 | 0.723 | 0.470 | 1e-125 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.841 | 0.682 | 0.340 | 8e-77 |
| >sp|Q9CAP8|LACS9_ARATH Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/529 (77%), Positives = 469/529 (88%), Gaps = 5/529 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
M Y GV+VPL T L++ SKKEKKRG+ VDVGGEPG+A+RN RFT VS+ WE ISTL
Sbjct: 1 MIPYAAGVIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
ELFE SC H D+ LGTR+LISRE E +++G++FEKLHLG+YEWLT+G+ E +C+FA
Sbjct: 61 PELFEISCNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGL Q+GHK EERVAIFADTR EWF++LQGCFRRNVTVVTIY+SLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICGSKELKKL+D+S QL+TVK VICMD PS V+S W TSF DVQ LGREN
Sbjct: 181 TVICGSKELKKLMDISQQLETVKRVICMDDEFPSDVNS-----NWMATSFTDVQKLGREN 235
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
PVD ++P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D+Y+AYLP
Sbjct: 236 PVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLP 295
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
LAH+LEL AE+++A +GSAIGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILDR
Sbjct: 296 LAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDR 355
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VRDGVRKKVDAKGGLSKKLFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LGG
Sbjct: 356 VRDGVRKKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGG 415
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
+IR++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE +D+SVGRVGAPLPC
Sbjct: 416 QIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPC 475
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
SF+KL+DW EGGYLTSD PMPRGEIVI G N+T+GYFKNEEKTKEVYKV
Sbjct: 476 SFVKLVDWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKV 524
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9SJD4|LACS8_ARATH Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/510 (62%), Positives = 401/510 (78%), Gaps = 1/510 (0%)
Query: 21 SKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTR 80
+KK KKRG+P+ VGGE G+ +R+ R LV WEG +T+ LFEQSCK++ LLGTR
Sbjct: 44 TKKGKKRGVPIKVGGEEGYTMRHARAPELVDVPWEGAATMPALFEQSCKKYSKDRLLGTR 103
Query: 81 QLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT 140
+ I +E A +GR FEKLHLGEY+W +YG+ FE +CNFASGL +GH ++RVAIF+DT
Sbjct: 104 EFIDKEFITASDGRKFEKLHLGEYKWQSYGEVFERVCNFASGLVNVGHNVDDRVAIFSDT 163
Query: 141 RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLD 200
RAEWF+A QGCFR+++TVVTIYASLGEEAL YSLNET V+T+IC SK+LKKL + L
Sbjct: 164 RAEWFIAFQGCFRQSITVVTIYASLGEEALIYSLNETRVSTLICDSKQLKKLSAIQSSLK 223
Query: 201 TVKHVICMDAN-IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTS 259
TVK++I ++ + + A S V G ++S ++V+ LG++N V P VAVIM+TS
Sbjct: 224 TVKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQPILPSKNGVAVIMFTS 283
Query: 260 GSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSA 319
GSTGLPKGVM+THGN++AT + VM +VP L D Y+AYLPLAHV EL AE ++ GSA
Sbjct: 284 GSTGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAHVFELEAEIVVFTSGSA 343
Query: 320 IGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKL 379
IGYG+ +TLTDTS+K+KKGT+GD S L+PT+M +VPAILDRVR+GV KKV+ KGG++K L
Sbjct: 344 IGYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVREGVLKKVEEKGGMAKTL 403
Query: 380 FDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRF 439
FD AY RRL+A++GSWFGAWGLEK+LW+ LVF K+RA+LGG IRF+L GGAPLS D+QRF
Sbjct: 404 FDFAYKRRLAAVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIRFMLVGGAPLSPDSQRF 463
Query: 440 INICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP 499
INIC+G+PIGQGYGLTETCAG TFSE DD +VGRVG PLPC ++KL+ W EGGY SD P
Sbjct: 464 INICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKLVSWEEGGYRISDKP 523
Query: 500 MPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
MPRGEIV+ G +VT GYF N+EKT EVYKV
Sbjct: 524 MPRGEIVVGGNSVTAGYFNNQEKTDEVYKV 553
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O60488|ACSL4_HUMAN Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/542 (46%), Positives = 334/542 (61%), Gaps = 30/542 (5%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEK---KRGIPVDVGGEPGHALRNC-RFTSLVSTSWEG 56
++ Y + +P F L N+KK+ KR +PG R+ F SL G
Sbjct: 19 ITIYSALIFIPWYF---LTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPG 75
Query: 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
TL +LF+ + + G K LGTR+++S E E+ NG+ F+KL LG Y+W+ Y + +
Sbjct: 76 ADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRV 135
Query: 117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
NF SGL LG K + +AIF +TRAEW +A Q CF+ N +VT+YA+LG+EA+ + LNE
Sbjct: 136 NNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNE 195
Query: 177 TEVTTVICG-----SKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFA 231
+E + +I SK L+D+S VKH+I +D A++ E ++I S
Sbjct: 196 SEASYLITSVELLESKLKTALLDIS----CVKHIIYVDN---KAINKAEYPEGFEIHSMQ 248
Query: 232 DVQILGRENP----VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
V+ LG NP + P +D+A++MYTSGSTG PKGVMM H N++A ++ +P
Sbjct: 249 SVEELG-SNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIP 307
Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLR 347
LG KD Y+ YLPLAHVLEL AE G IGY +PLTL+D SSKIKKG++GD +VL+
Sbjct: 308 GLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLK 367
Query: 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407
PT+MA+VP I+DR+ V KV + K LF + Y +L I G + L N
Sbjct: 368 PTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCN 421
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
LL+F KV+A+LGG +R +LSGGAPLS T RF+N+C PIGQGYGLTE+C GT +EV
Sbjct: 422 LLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVT 481
Query: 468 DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
D + GRVGAPL C IKL DW EGGY +D P PRGEIVI G N+++GYFKNEEKT E Y
Sbjct: 482 DYTTGRVGAPLICCEIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDY 541
Query: 528 KV 529
V
Sbjct: 542 SV 543
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q63151|ACSL3_RAT Long-chain-fatty-acid--CoA ligase 3 OS=Rattus norvegicus GN=Acsl3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/531 (46%), Positives = 330/531 (62%), Gaps = 20/531 (3%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCR-FTSLVSTSWEGIS 58
+S Y + +P F L SK+EK I V +P A R+ L S + G
Sbjct: 30 ISLYTILTYIPFYF---LCESKQEKPNHIKAKPVSSKPDSAYRSVNSMDGLASVLYPGCD 86
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
TL ++F + + DK LLGTR++++ E E+ NG+ F+K+ LG Y WL+Y F +
Sbjct: 87 TLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRALD 146
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
F +GL LG K + +AIF +TRAEW +A Q CF N +VT+YA+LG A+ + LNETE
Sbjct: 147 FGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETE 206
Query: 179 VTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
VT +I SKEL KL D+ + ++H+I +D P+ E + + A VQ L
Sbjct: 207 VTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGVIVHTMAAVQAL 262
Query: 237 GRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
G + VD P+ +D+AVIMYTSGSTG+PKGVM++H N++A+++ + +P LG +D
Sbjct: 263 GVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEED 322
Query: 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
VY+ YLPLAHVLEL AE + G IGY +P TL D SSKIKKG++GD SVL+PT+MA+
Sbjct: 323 VYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAA 382
Query: 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
VP I+DR+ V KV+ + LF LAY ++ I+ G L + VF
Sbjct: 383 VPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCSTPLCDRFVFRN 436
Query: 414 VRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
VR +LGG IR +L GGAPLSA TQRF+NIC P+GQGYGLTE+ GT +EV D + GR
Sbjct: 437 VRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWDYNTGR 496
Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
VGAPL C IKL +W EGGY +D P PRGEI+I G NVT+GY+KNE KTK
Sbjct: 497 VGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTK 547
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 is required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Has mainly an anabolic role in energy metabolism. Mediates hepatic lipogenesis. Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Both isoforms exhibit the same level of activity. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q5R668|ACSL3_PONAB Long-chain-fatty-acid--CoA ligase 3 OS=Pongo abelii GN=ACSL3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/530 (45%), Positives = 331/530 (62%), Gaps = 18/530 (3%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
+S Y + +P F R K + + PV+ +P A R+ L S + G T
Sbjct: 30 ISLYTILTYIPFYFFSESRQEKSNRIKAKPVN--SKPDSAYRSVNSLDGLASVLYPGCDT 87
Query: 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
L ++F + + +K LLGTR++++ E EV NG+ F+K+ LG+Y WL+Y F NF
Sbjct: 88 LDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNF 147
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
+GL LG K + +AIF +TRAEW +A Q CF N +VT+YA+LG A+ ++LNETEV
Sbjct: 148 GNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEV 207
Query: 180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
T +I SKEL KL D+ + ++H+I +D P+ E + + A V+ LG
Sbjct: 208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGIIVHTMAAVEALG 263
Query: 238 RENPVDAD---YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
+ ++ P+ +D+AVIMYTSGSTGLPKGVM++H N++A ++ + +P+LG +DV
Sbjct: 264 AKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDV 323
Query: 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
Y+ YLPLAHVLEL AE + G IGY +P TL D SSKIKKG++GD S+L+PT+MA+V
Sbjct: 324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAV 383
Query: 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
P I+DR+ V KV + LF LAY ++ I+ G L N VF KV
Sbjct: 384 PEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRNTPLCNSFVFRKV 437
Query: 415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
R++LGG IR +L GGAPLSA TQRF+NIC P+GQGYGLTE+ GT SEV D + GRV
Sbjct: 438 RSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWDYNTGRV 497
Query: 475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
GAPL C IKL +W EGGY +D P PRGEI+I G VT+GY+KNE KTK
Sbjct: 498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQIVTMGYYKNEAKTK 547
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O95573|ACSL3_HUMAN Long-chain-fatty-acid--CoA ligase 3 OS=Homo sapiens GN=ACSL3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/530 (45%), Positives = 332/530 (62%), Gaps = 18/530 (3%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
+S Y + +P F R K + + PV+ +P A R+ L S + G T
Sbjct: 30 ISLYTILTYIPFYFFSESRQEKSNRIKAKPVN--SKPDSAYRSVNSLDGLASVLYPGCDT 87
Query: 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
L ++F + + +K LLGTR++++ E EV NG+ F+K+ LG+Y WL+Y F NF
Sbjct: 88 LDKVFTYAKNKFKNKRLLGTREVLNEEDEVQPNGKIFKKVILGQYNWLSYEDVFVRAFNF 147
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
+GL LG K + +AIF +TRAEW +A Q CF N +VT+YA+LG A+ ++LNETEV
Sbjct: 148 GNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHALNETEV 207
Query: 180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
T +I SKEL KL D+ + ++H+I +D P+ E + + A V+ LG
Sbjct: 208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGIIVHTMAAVEALG 263
Query: 238 RENPVDAD---YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
+ ++ P+ +D+AVIMYTSGSTGLPKGVM++H N++A ++ + +P+LG +DV
Sbjct: 264 AKASMENQPHSKPLPSDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEEDV 323
Query: 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
Y+ YLPLAHVLEL AE + G IGY +P TL D SSKIKKG++GD S+L+PT+MA+V
Sbjct: 324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSMLKPTLMAAV 383
Query: 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
P I+DR+ V KV + LF LAY ++ I+ G L + VF KV
Sbjct: 384 PEIMDRIYKNVMNKVSEMSSFQRNLFILAYNYKMEQISK------GRNTPLCDSFVFRKV 437
Query: 415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
R++LGG IR +L GGAPLSA TQRF+NIC P+GQGYGLTE+ GT SEV D + GRV
Sbjct: 438 RSLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESAGAGTISEVWDYNTGRV 497
Query: 475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
GAPL C IKL +W EGGY +D P PRGEI+I G +VT+GY+KNE KTK
Sbjct: 498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQSVTMGYYKNEAKTK 547
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates (By similarity). Has mainly an anabolic role in energy metabolism. Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins). Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9QUJ7|ACSL4_MOUSE Long-chain-fatty-acid--CoA ligase 4 OS=Mus musculus GN=Acsl4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/537 (45%), Positives = 330/537 (61%), Gaps = 20/537 (3%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEK---KRGIPVDVGGEPGHALRNC-RFTSLVSTSWEG 56
++ Y + +P F L N+KK+ KR +PG R+ F SL G
Sbjct: 19 ITIYSALIFIPWYF---LTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPG 75
Query: 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
TL +LF+ + + G K LGTR+++S E E+ NG+ F+KL LG Y+W+ Y + +
Sbjct: 76 ADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCRV 135
Query: 117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
NF SGL LG K + +AIF +TRAEW +A Q CF+ N +VT+YA+LG EA+ + LNE
Sbjct: 136 NNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNE 195
Query: 177 TEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQI 235
+E + +I + L+ KL ++ VKH+I +D ++ E +I S V+
Sbjct: 196 SEASYLITSVELLESKLKAALVDINCVKHIIYVDN---KTINRAEYPEGLEIHSMQSVEE 252
Query: 236 LGR--EN-PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292
LG EN V P +D+A++MYTSGSTG PKGVMM H N++A ++ +P LG K
Sbjct: 253 LGAKPENLSVPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPK 312
Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMA 352
D Y+ YLPLAHVLEL AE G IGY +PLTL+D SSKIKKG++GD +VL+PT+MA
Sbjct: 313 DTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMA 372
Query: 353 SVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFS 412
+VP I+DR+ V KV + K LF + Y +L I G + L NL++F
Sbjct: 373 AVPEIMDRIYKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKK------GYDAPLCNLILFK 426
Query: 413 KVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVG 472
KV+A+LGG +R +LSGGAPLS T RF+N+C PIGQGYGLTE+C GT +EV D + G
Sbjct: 427 KVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTG 486
Query: 473 RVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
RVGAPL C IKL DW EGGY D P PRGEIVI G N+++GYFKNEEKT E Y V
Sbjct: 487 RVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCV 543
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9CZW4|ACSL3_MOUSE Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 244/531 (45%), Positives = 330/531 (62%), Gaps = 20/531 (3%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCR-FTSLVSTSWEGIS 58
+S Y + +P F L SK+EK I V +P A R+ L S + G
Sbjct: 30 ISLYTILTYIPFYF---LCESKQEKPNQIKAKPVSSKPDSAYRSINSVDGLASVLYPGCD 86
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
TL ++F + + +K LLGTR++++ E E+ NG+ F+K+ LG Y WL+Y F +
Sbjct: 87 TLDKVFMYAKNKFKNKRLLGTREILNEEDEIQPNGKIFKKVILGHYNWLSYEDVFIRALD 146
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
F +GL LG K + +AIF +TRAEW +A Q CF N +VT+YA+LG A+ + LNETE
Sbjct: 147 FGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETE 206
Query: 179 VTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
VT +I SKEL KL D+ + ++H+I +D P+ E + + A VQ L
Sbjct: 207 VTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTWS---EFPKGVIVHTMAAVQAL 262
Query: 237 GRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
G + V+ P+ +D+AVIMYTSGSTG+PKGVM++H N++A+++ + +P LG +D
Sbjct: 263 GVKANVEKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEED 322
Query: 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
VY+ YLPLAHVLEL AE + G IGY +P TL D SSKIKKG++GD SVL+PT+MA+
Sbjct: 323 VYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAA 382
Query: 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
VP I+DR+ V KV+ + LF LAY ++ I+ G L + VF
Sbjct: 383 VPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCSTPLCDRFVFRN 436
Query: 414 VRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
VR +LGG IR +L GGAPLSA TQRF+NIC P+GQGYGLTE+ GT +EV D + GR
Sbjct: 437 VRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWDYNTGR 496
Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
VGAPL C IKL +W EGGY +D P PRGEI+I G NVT+GY+KNE KTK
Sbjct: 497 VGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTK 547
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL3 has mainly an anabolic role in energy metabolism (By similarity). Required for the incorporation of fatty acids into phosphatidylcholine, the major phospholipid located on the surface of VLDL (very low density lipoproteins) (By similarity). Mediates hepatic lipogenesis (By similarity). Preferentially uses myristate, laurate, arachidonate and eicosapentaenoate as substrates. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O35547|ACSL4_RAT Long-chain-fatty-acid--CoA ligase 4 OS=Rattus norvegicus GN=Acsl4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/499 (47%), Positives = 315/499 (63%), Gaps = 14/499 (2%)
Query: 36 EPGHALRNC-RFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGR 94
+PG R+ F SL G TL +LF+ + + G K LGTR+++S E E+ NG+
Sbjct: 13 KPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGK 72
Query: 95 SFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRR 154
F+KL LG Y+W+ Y + + NF SGL LG K + +AIF +TRAEW +A Q CF+
Sbjct: 73 VFKKLILGNYKWINYLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKY 132
Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIP 213
N +VT+YA+LG+EA+ + LNE+E + +I + L+ KL ++ VKH+I +D
Sbjct: 133 NFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKAALLDINCVKHIIYVDN--- 189
Query: 214 SAVSSVEQSGRWKITSFADVQILG---RENPVDADYPVSADVAVIMYTSGSTGLPKGVMM 270
++ E +I S V+ LG + + P +D+A++MYTSGSTG PKGVMM
Sbjct: 190 KTINRAEYPEGLEIHSMQSVEELGSKPENSSIPPSRPTPSDMAIVMYTSGSTGRPKGVMM 249
Query: 271 THGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTD 330
H N++A ++ +P LG KD Y+ YLPLAHVLEL AE G IGY +PLTL+D
Sbjct: 250 HHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSD 309
Query: 331 TSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSA 390
SSKIKKG++GD +VL+PT+MA+VP I+DR+ V KV + K LF + Y +L
Sbjct: 310 QSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQ 369
Query: 391 INGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450
I G + L NL++F KV+A+LGG +R +LSGGAPLS T RF+N+C PIGQ
Sbjct: 370 IKK------GYDAPLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQ 423
Query: 451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510
GYGLTE+C GT +EV D + GRVGAPL C IKL DW EGGY D P PRGEIVI G
Sbjct: 424 GYGLTESCGAGTVTEVTDYTTGRVGAPLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQ 483
Query: 511 NVTVGYFKNEEKTKEVYKV 529
N+++GYFKNEEKT E Y V
Sbjct: 484 NISMGYFKNEEKTAEDYSV 502
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses arachidonate and eicosapentaenoate as substrates. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (737), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 255/487 (52%), Gaps = 32/487 (6%)
Query: 42 RNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHL 101
RN +F L ++ TL +++ + D LG R+L+ AD R
Sbjct: 38 RNTKFPKLTNSPDGKTFTLYDVYR--INKDSDSNFLGIRELL------ADGKR------- 82
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G+Y+W++Y QA N S L QLG K +R+ IF+ R EW ++ ++ V +
Sbjct: 83 GDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWVLSDMAAMNHSLVPVAL 142
Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
YA+LG A+ Y +N +E++ ++C K ++K++ + G T+K ++ D + + +
Sbjct: 143 YATLGANAIEYVVNHSEISVLLCEGKNVEKILSMPGT--TIKTIVSYDPLPQATLDKFKD 200
Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+ K+ +D + LG +NP + P D+ ++YTSGSTG PKGVM+TH N+++ V+
Sbjct: 201 NENVKLYLLSDFEKLGEQNPAQHEVPSPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAG 260
Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
+ +DV+++YLPLAH E +L+ VG IG+ + L
Sbjct: 261 ANFSPAGVIPEDVHMSYLPLAHSFERAVVSLMCYVGGQIGFFSGLI---------PELFN 311
Query: 342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
D VLRPT + P + R+ D + V+ L K LF+ + SA+ G
Sbjct: 312 DIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSKQSALR------LGS 365
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGG 461
+W+ LVFSK + LGGR++FILSG APL F+ C P+ GYGL+E G
Sbjct: 366 TTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVVSGYGLSENVGGA 425
Query: 462 TFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
+ + +D++VG VG PL +KLID PE Y ++D P PRGE+ I G NV GYFK+ E
Sbjct: 426 SVAYPEDNNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCIRGFNVFKGYFKDPE 485
Query: 522 KTKEVYK 528
KTKE K
Sbjct: 486 KTKEDLK 492
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 541 | ||||||
| 225459554 | 697 | PREDICTED: long chain acyl-CoA synthetas | 0.977 | 0.758 | 0.820 | 0.0 | |
| 317373791 | 697 | long-chain acyl-CoA synthetase 1 [Helian | 0.977 | 0.758 | 0.803 | 0.0 | |
| 255545494 | 697 | long-chain-fatty-acid CoA ligase, putati | 0.977 | 0.758 | 0.801 | 0.0 | |
| 15224012 | 691 | long chain acyl-CoA synthetase 9 [Arabid | 0.968 | 0.758 | 0.773 | 0.0 | |
| 297842535 | 691 | long chain acyl-CoA synthetase 9 [Arabid | 0.968 | 0.758 | 0.769 | 0.0 | |
| 12049721 | 693 | long chain acyl-CoA synthetase [Brassica | 0.968 | 0.756 | 0.766 | 0.0 | |
| 84468274 | 694 | putative long chain acyl-CoA synthetase | 0.972 | 0.757 | 0.758 | 0.0 | |
| 356549152 | 696 | PREDICTED: long chain acyl-CoA synthetas | 0.974 | 0.757 | 0.762 | 0.0 | |
| 449449745 | 695 | PREDICTED: long chain acyl-CoA synthetas | 0.975 | 0.759 | 0.776 | 0.0 | |
| 449500691 | 695 | PREDICTED: long chain acyl-CoA synthetas | 0.975 | 0.759 | 0.773 | 0.0 |
| >gi|225459554|ref|XP_002285853.1| PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Vitis vinifera] gi|302141820|emb|CBI19023.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/530 (82%), Positives = 480/530 (90%), Gaps = 1/530 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
MSAY VG+LVPLVFTLL RN+K KKRG+PVDVGGEPG+A+RN RFTS V ++WEGISTL
Sbjct: 1 MSAYFVGLLVPLVFTLLFRNAKSGKKRGLPVDVGGEPGYAIRNRRFTSPVKSAWEGISTL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
AELFEQ CK+H DK+LLGTR+LISRETEV +GRSFEK+HLG+YEWLTYG+ FE IC+FA
Sbjct: 61 AELFEQLCKQHRDKHLLGTRKLISRETEVTADGRSFEKVHLGDYEWLTYGKTFEVICSFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGLAQLGHK+EER AIFADTR EWF+ALQ CFRRN+TVVTIYASLGEEALC+SLNETEVT
Sbjct: 121 SGLAQLGHKREERAAIFADTREEWFIALQACFRRNITVVTIYASLGEEALCHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICG KELKK++D+SGQLDT+K VICMD + S E G W ITSF+DV+ LGREN
Sbjct: 181 TVICGHKELKKIIDISGQLDTLKRVICMDDSTLCNTSLAEGGGSWTITSFSDVEKLGREN 240
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS-KDVYLAYL 299
PVDAD P+SAD+AVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP LG +DVYLAYL
Sbjct: 241 PVDADLPLSADIAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPGLGKVEDVYLAYL 300
Query: 300 PLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
P+AH+LEL AEN++A +G AIGYG+PLTLTDTSS+IK+GT+GDAS L PTVM +VPAILD
Sbjct: 301 PMAHILELAAENVVAAIGGAIGYGSPLTLTDTSSRIKRGTKGDASALVPTVMTAVPAILD 360
Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
RVRDGVRKKVDAKGGL+KKLFDLAYARRLSAINGSWFGAWGLE LLWN LVF KVRAILG
Sbjct: 361 RVRDGVRKKVDAKGGLAKKLFDLAYARRLSAINGSWFGAWGLESLLWNFLVFRKVRAILG 420
Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
GRIRF+L GGAPLS+DTQRFINICLGAPI QGYGLTE+CAGGTFSE DD+SVGRVGAPLP
Sbjct: 421 GRIRFLLCGGAPLSSDTQRFINICLGAPIVQGYGLTESCAGGTFSEYDDTSVGRVGAPLP 480
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
CSFIKLI+WPEGGYLTSD PMPRGEIVI GPNVTVGYFKNEEKT EVYKV
Sbjct: 481 CSFIKLINWPEGGYLTSDKPMPRGEIVIGGPNVTVGYFKNEEKTNEVYKV 530
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|317373791|gb|ADV16378.1| long-chain acyl-CoA synthetase 1 [Helianthus annuus] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/529 (80%), Positives = 477/529 (90%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
MSAY+VGVL PL+ TL LRN KKEK+RG+P DV GEPG+A+RN RFTS V T+W GI TL
Sbjct: 1 MSAYVVGVLAPLLLTLALRNLKKEKRRGLPADVSGEPGYAIRNYRFTSPVETAWAGIETL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
A+LFEQ+CK+HGDK LLGTR++ISRETEV +GRSFEKLHLG+YEW+TYGQ ++ +CNFA
Sbjct: 61 ADLFEQACKKHGDKNLLGTRKIISRETEVNQDGRSFEKLHLGDYEWMTYGQVYQVVCNFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGL Q+GHK ERVAIFADTR EWF+ALQ CFRRNVTVVT+YASLGEEA+C+SLNETEVT
Sbjct: 121 SGLVQIGHKSGERVAIFADTREEWFIALQACFRRNVTVVTMYASLGEEAICHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICG+KELKKL+D+SGQ+DTV+ VICMD + S+ + S WKI F++V+ +GREN
Sbjct: 181 TVICGNKELKKLIDISGQIDTVQRVICMDDEVYSSPFLTDGSSSWKIFPFSEVEEIGREN 240
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
V+AD P+ ADVAV+MYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP LG DVYLAYLP
Sbjct: 241 AVEADLPLPADVAVVMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPGLGGNDVYLAYLP 300
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
LAH+LEL AENLIA VGS+IGYG+PLTLTDTSSKIK+GT+GDASVLRPT+MA+VPAILDR
Sbjct: 301 LAHILELAAENLIAAVGSSIGYGSPLTLTDTSSKIKRGTKGDASVLRPTLMAAVPAILDR 360
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VRDGVRKKVD+ GGLSK LF+LAY RRLSAINGSW GAWGLEKLLWN LVF KVRAILGG
Sbjct: 361 VRDGVRKKVDSAGGLSKTLFNLAYNRRLSAINGSWLGAWGLEKLLWNYLVFRKVRAILGG 420
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
RIRFILSGGAPLSADTQRFINIC GAPIGQGYGLTETCAGGTFSE DD+SVGRVGAPLPC
Sbjct: 421 RIRFILSGGAPLSADTQRFINICFGAPIGQGYGLTETCAGGTFSEYDDTSVGRVGAPLPC 480
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
S+IKLI+WPEGGYLTSDSPMPRGEIVI GPNVT+GYFKN+EKTKEVYKV
Sbjct: 481 SYIKLINWPEGGYLTSDSPMPRGEIVIGGPNVTLGYFKNDEKTKEVYKV 529
|
Source: Helianthus annuus Species: Helianthus annuus Genus: Helianthus Family: Asteraceae Order: Asterales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545494|ref|XP_002513807.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] gi|223546893|gb|EEF48390.1| long-chain-fatty-acid CoA ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/530 (80%), Positives = 478/530 (90%), Gaps = 1/530 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKE-KKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGIST 59
MSAYIVGVLVPLV TLL RNSK KKRG+P+DVGGEPG+A+RN F++ + T+WEG+ T
Sbjct: 1 MSAYIVGVLVPLVVTLLFRNSKHNAKKRGVPIDVGGEPGYAIRNAGFSTPLETAWEGVIT 60
Query: 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
+A+LFE +C +H DK+LLGTRQLIS+ETEV+ +GRSFEKLHLGEYEWLTY Q F+ + NF
Sbjct: 61 IAQLFEYACNKHSDKFLLGTRQLISKETEVSGDGRSFEKLHLGEYEWLTYAQVFDKVSNF 120
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
ASGL +GH + ERVAIFADTRAEWF+ALQGCFRRNVTVVTIY+SLGEEALC+SLNETEV
Sbjct: 121 ASGLTSIGHLRNERVAIFADTRAEWFIALQGCFRRNVTVVTIYSSLGEEALCHSLNETEV 180
Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE 239
+TVICG ELKKL D+S QLDTVK VICMD IPS+ SS+EQSGRW I S ++V+ LG+E
Sbjct: 181 STVICGKNELKKLADISEQLDTVKRVICMDDEIPSSASSLEQSGRWTIISLSNVEKLGQE 240
Query: 240 NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYL 299
P+DAD P+ D+AVIMYTSGSTGLPKGVMMTH NVLA VS+V IVP L SKDVYLAYL
Sbjct: 241 KPIDADLPLPNDIAVIMYTSGSTGLPKGVMMTHANVLAVVSSVRKIVPGLESKDVYLAYL 300
Query: 300 PLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
PLAH+LEL AEN++AGVGSAIGYGTPLTLTDTS+KIK+GT+GDA+VLRPTVMA+VPAILD
Sbjct: 301 PLAHILELAAENIVAGVGSAIGYGTPLTLTDTSNKIKRGTKGDATVLRPTVMAAVPAILD 360
Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
RVRDGVRKKVDAKGGLSKKLFDLAYARRLSA+NGSWFGAWGLE +LWN LVF KVRA+LG
Sbjct: 361 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAVNGSWFGAWGLELVLWNFLVFRKVRAVLG 420
Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
GR+RF+LSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSE DDSSVGRVG PLP
Sbjct: 421 GRVRFLLSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEFDDSSVGRVGNPLP 480
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
C++IKLIDWPEGGYL SDSPMPRGEIVI GP+VTVGYFKNEEKT+EVYKV
Sbjct: 481 CTYIKLIDWPEGGYLISDSPMPRGEIVIGGPSVTVGYFKNEEKTREVYKV 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224012|ref|NP_177882.1| long chain acyl-CoA synthetase 9 [Arabidopsis thaliana] gi|75169926|sp|Q9CAP8.1|LACS9_ARATH RecName: Full=Long chain acyl-CoA synthetase 9, chloroplastic gi|12323387|gb|AAG51668.1|AC010704_12 putative acyl-CoA synthetase; 62297-59022 [Arabidopsis thaliana] gi|20805879|gb|AAM28876.1|AF503759_1 long chain acyl-CoA synthetase 9 [Arabidopsis thaliana] gi|332197875|gb|AEE35996.1| long chain acyl-CoA synthetase 9 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/529 (77%), Positives = 469/529 (88%), Gaps = 5/529 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
M Y GV+VPL T L++ SKKEKKRG+ VDVGGEPG+A+RN RFT VS+ WE ISTL
Sbjct: 1 MIPYAAGVIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
ELFE SC H D+ LGTR+LISRE E +++G++FEKLHLG+YEWLT+G+ E +C+FA
Sbjct: 61 PELFEISCNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGL Q+GHK EERVAIFADTR EWF++LQGCFRRNVTVVTIY+SLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICGSKELKKL+D+S QL+TVK VICMD PS V+S W TSF DVQ LGREN
Sbjct: 181 TVICGSKELKKLMDISQQLETVKRVICMDDEFPSDVNS-----NWMATSFTDVQKLGREN 235
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
PVD ++P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D+Y+AYLP
Sbjct: 236 PVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLP 295
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
LAH+LEL AE+++A +GSAIGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILDR
Sbjct: 296 LAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDR 355
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VRDGVRKKVDAKGGLSKKLFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LGG
Sbjct: 356 VRDGVRKKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGG 415
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
+IR++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE +D+SVGRVGAPLPC
Sbjct: 416 QIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPC 475
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
SF+KL+DW EGGYLTSD PMPRGEIVI G N+T+GYFKNEEKTKEVYKV
Sbjct: 476 SFVKLVDWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKV 524
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842535|ref|XP_002889149.1| long chain acyl-CoA synthetase 9 [Arabidopsis lyrata subsp. lyrata] gi|297334990|gb|EFH65408.1| long chain acyl-CoA synthetase 9 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/529 (76%), Positives = 468/529 (88%), Gaps = 5/529 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
M Y GV+VPL T ++ SKKEKKRG+ VDVGGEPG+A+RN RFT VS+ WE ISTL
Sbjct: 1 MIPYAAGVIVPLALTFWVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTDPVSSHWEHISTL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
ELFE SCK H D+ LGTR+LISRE E + +G++FEKLHLG+YEWLT+G+ E +C+FA
Sbjct: 61 PELFEISCKAHSDRVFLGTRKLISREIETSQDGKTFEKLHLGDYEWLTFGKTLEAVCDFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGL Q+GHK EERVAIFADTR EWF++LQGCFRRNVTVVTIY+SLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICGSKELKKL+D+ QL+TVK VICMD PS ++S W TSFADVQ LGREN
Sbjct: 181 TVICGSKELKKLMDIGQQLETVKRVICMDDEFPSDLNS-----NWMATSFADVQKLGREN 235
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
PVD ++P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D+Y+AYLP
Sbjct: 236 PVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLP 295
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
LAH+LEL AE+++A +GS+IGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILDR
Sbjct: 296 LAHILELAAESVMATIGSSIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDR 355
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VRDGVRKKVDAKGGLSK LFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LGG
Sbjct: 356 VRDGVRKKVDAKGGLSKILFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGG 415
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
+IR++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE +D+SVGRVGAPLPC
Sbjct: 416 QIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPC 475
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
SF+KL+DWPEGGYLTSD PMPRGEIVI G N+T+GYFKNEEKTKEVYKV
Sbjct: 476 SFVKLVDWPEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKV 524
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12049721|emb|CAC19877.1| long chain acyl-CoA synthetase [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/530 (76%), Positives = 465/530 (87%), Gaps = 6/530 (1%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCRFTSLVSTSWEGIST 59
M Y GV+VPL TLL+RN+KK+KKRG+ VD VGGEPGH +RN RF VS+ WE IST
Sbjct: 1 MIPYAAGVIVPLALTLLVRNAKKDKKRGVVVDDVGGEPGHTVRNHRFKDPVSSHWEDIST 60
Query: 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
L ELFE SCK H D++ LGTR+LI+RE E +++G+ FEKLHLG+YEW T+G+ E +C+F
Sbjct: 61 LPELFEISCKSHSDRFFLGTRRLIAREVETSEDGKVFEKLHLGDYEWKTFGETLEAVCSF 120
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
ASGL Q+GHK EERVAIFADTR EWF+ALQGCFRRNVTVVTIY+SLGEEALC+SLNETEV
Sbjct: 121 ASGLVQIGHKSEERVAIFADTREEWFIALQGCFRRNVTVVTIYSSLGEEALCHSLNETEV 180
Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE 239
TTVICG+KELKKL+D+S QL+TVK VICMD PS SS W TS ADVQ LGRE
Sbjct: 181 TTVICGNKELKKLMDISQQLETVKRVICMDDEFPSEASST-----WTTTSLADVQKLGRE 235
Query: 240 NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYL 299
+PVD +P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D Y+AYL
Sbjct: 236 SPVDPSFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDTYMAYL 295
Query: 300 PLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
PLAH+LEL AE+++A +GSAIGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILD
Sbjct: 296 PLAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILD 355
Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
RVRDGVRKKVDAKGG +KKLFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LG
Sbjct: 356 RVRDGVRKKVDAKGGAAKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFGKIRAVLG 415
Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
G++R++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE DD+SVGRVGAPLP
Sbjct: 416 GQLRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFDDTSVGRVGAPLP 475
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
CSF+KLIDWPEGGYL SD PMPRGEIVI G N+T+GYFKNEEKTKEVYKV
Sbjct: 476 CSFVKLIDWPEGGYLISDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKV 525
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|84468274|dbj|BAE71220.1| putative long chain acyl-CoA synthetase 9 [Trifolium pratense] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/529 (75%), Positives = 468/529 (88%), Gaps = 3/529 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
M+AYI+G +VPLV L +N+K K+RG+P DV G+PG A+RN R TS ++++WEG++TL
Sbjct: 1 MNAYIIGFVVPLVI-YLFKNAKSRKRRGLPADVAGDPGFAVRNHRVTSPMTSAWEGVTTL 59
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
ELFE++C+EH + LLGTR+LISRE E + +GRSFEKL LGEY+W+TYG FE++ +FA
Sbjct: 60 VELFERACREHHHRLLLGTRELISREIETSSDGRSFEKLDLGEYKWITYGTVFESVTSFA 119
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGLA+LGH +EER AIFA+TR EWF+ALQ CFRRNVTVVTIYASLGEEALC+SLNETEV
Sbjct: 120 SGLAKLGHVREERAAIFAETREEWFIALQACFRRNVTVVTIYASLGEEALCHSLNETEVA 179
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICG KELK LV+++GQLD+VK VIC+D ++PS SS + RW ITSF+DV+ LGREN
Sbjct: 180 TVICGRKELKSLVNIAGQLDSVKRVICIDNDVPSDASSAQH--RWTITSFSDVEKLGREN 237
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
P++AD P+SADVAVIMYTSGSTGLPKGVMMTHGN+LATVSAVMTIVP+LG KDVYLAYLP
Sbjct: 238 PIEADLPLSADVAVIMYTSGSTGLPKGVMMTHGNILATVSAVMTIVPNLGPKDVYLAYLP 297
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
+AH+LEL+AENLIA VG IGYGTPLTLTDTS+K+KKGT+GDAS L PTVMA+VPAILDR
Sbjct: 298 MAHILELIAENLIASVGGCIGYGTPLTLTDTSNKVKKGTKGDASALSPTVMAAVPAILDR 357
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VRDGV KKV+AKGGLSK+LFDLAY RRL AINGSWFGAWGLEK LWN LVF K++AILGG
Sbjct: 358 VRDGVFKKVNAKGGLSKQLFDLAYTRRLKAINGSWFGAWGLEKFLWNFLVFKKIQAILGG 417
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
RIRFIL GGAPLS DTQRFINICLGAPIGQGYGLTETCAGG+FS+ DD+SVGRVG P+PC
Sbjct: 418 RIRFILCGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGGSFSDFDDTSVGRVGPPIPC 477
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
S+IKLIDWPEGGY T+DSPMPRGEIVI GPN+T+GYFKNEEKT+E YKV
Sbjct: 478 SYIKLIDWPEGGYSTTDSPMPRGEIVIGGPNITLGYFKNEEKTRESYKV 526
|
Source: Trifolium pratense Species: Trifolium pratense Genus: Trifolium Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549152|ref|XP_003542961.1| PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/530 (76%), Positives = 466/530 (87%), Gaps = 3/530 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRN-SKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGIST 59
M+ YI GV+VPL+ TL++RN S +++RG+PV+VGGEPG A+RN RF + V ++WEG++T
Sbjct: 1 MTPYIFGVVVPLLVTLIIRNNSNPKRRRGVPVEVGGEPGLAIRNRRFEAPVQSAWEGVAT 60
Query: 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
LAELFE++CK H ++ LLGTR ++ RE E +GRSFEKLHLG+Y+WL+Y + F+ + F
Sbjct: 61 LAELFEEACKTHAERLLLGTRGVLQREVETGQDGRSFEKLHLGDYDWLSYDRVFDVVSGF 120
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
ASGLA +GH +EER AIFADTR EWF+ALQGCFRRNVTVVT+YASLGEEALCYSLNETEV
Sbjct: 121 ASGLACIGHVREERAAIFADTRQEWFMALQGCFRRNVTVVTMYASLGEEALCYSLNETEV 180
Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE 239
TTVICG KEL+ LV++SGQLD+VK VICMD +IPS SS+ W ITSFA+V LGRE
Sbjct: 181 TTVICGKKELRTLVNISGQLDSVKRVICMDDDIPSDASSIAYD--WTITSFAEVVKLGRE 238
Query: 240 NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYL 299
NPVDAD P+SADVAVIMYTSGSTGLPKGVMMTHGNVLAT+SAVMTIVPD+G+KD+YLAYL
Sbjct: 239 NPVDADLPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATLSAVMTIVPDIGTKDIYLAYL 298
Query: 300 PLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
P+AH+LEL AENL+A VG IGYG+PLT TDTS+KIKKGT+GDA+ LRPT+MA+VPAILD
Sbjct: 299 PMAHILELAAENLMAAVGVPIGYGSPLTFTDTSNKIKKGTKGDATALRPTLMAAVPAILD 358
Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
RVRDGV KKV+A GGL KKLF LAYARRL A+NGSWFGAWGLEK LW+ LVF KVRAILG
Sbjct: 359 RVRDGVFKKVNATGGLPKKLFHLAYARRLQAVNGSWFGAWGLEKALWDFLVFRKVRAILG 418
Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
GRIRFILSGGAPLS DTQ+FINICLGAPIGQGYGLTETCAGGTFS+VDD+SVGRVG PLP
Sbjct: 419 GRIRFILSGGAPLSGDTQKFINICLGAPIGQGYGLTETCAGGTFSDVDDTSVGRVGPPLP 478
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
CSFIKLIDWPEGGYL +DSPM RGEIVI GPNVT+GYFKNEEKTKE YKV
Sbjct: 479 CSFIKLIDWPEGGYLINDSPMARGEIVIGGPNVTLGYFKNEEKTKESYKV 528
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449745|ref|XP_004142625.1| PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/529 (77%), Positives = 464/529 (87%), Gaps = 1/529 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
MSAYIVGVLVP+V TL RNSKK KKRG+PVD GG+PG A+RN + V T+WEGI TL
Sbjct: 1 MSAYIVGVLVPVVVTLFFRNSKKAKKRGLPVDAGGDPGFAVRNSKCPEPVETAWEGIFTL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
AELFE SCK+H D+ LLGTR+LI +ETEV +GRSFEK HLG+YEWLTYGQAFE +C+FA
Sbjct: 61 AELFEYSCKQHQDRRLLGTRKLIEKETEVTADGRSFEKFHLGDYEWLTYGQAFEAVCSFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGL Q+GH K ER AIFADTR EWF+ALQGCFRRN+TVVTIYASLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHNKGERAAIFADTREEWFIALQGCFRRNITVVTIYASLGEEALCHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICG KEL KL+ +SGQL TVK+V+CMD IP ++ + E +G WKITSFA VQ+LG+E
Sbjct: 181 TVICGQKELSKLLGISGQLKTVKNVVCMD-EIPQSIINSEPNGNWKITSFAKVQLLGQEC 239
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
V A+ P+SAD+AVIMYTSGSTGLPKGVMMTH NVLATVSAVMTIVP LG KD YLAYLP
Sbjct: 240 NVGAELPMSADIAVIMYTSGSTGLPKGVMMTHANVLATVSAVMTIVPGLGKKDTYLAYLP 299
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
+AH+LEL AEN++AGVG AIGYG+PLTLTDTS+K+K+GT+GDA+ L PTVM +VPAILDR
Sbjct: 300 MAHILELAAENVMAGVGCAIGYGSPLTLTDTSNKVKRGTKGDATALVPTVMTAVPAILDR 359
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VR+GV KKV+ GGL+KKLFDLAY+RRLSA+NGSWFGAWGLE LLWN LVF KV+AILGG
Sbjct: 360 VREGVLKKVNGTGGLAKKLFDLAYSRRLSAMNGSWFGAWGLEMLLWNFLVFRKVQAILGG 419
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
R+RF+LSGGAPLS DTQRFINICL APIGQGYGLTETCAGGTFSE DD +VGRVGAPLPC
Sbjct: 420 RLRFLLSGGAPLSGDTQRFINICLSAPIGQGYGLTETCAGGTFSEFDDLTVGRVGAPLPC 479
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
SF+KLIDWPEGGYLTSD P PRGEIVI GPNVT+GYFKNEEKTKE YKV
Sbjct: 480 SFVKLIDWPEGGYLTSDLPRPRGEIVIGGPNVTLGYFKNEEKTKESYKV 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500691|ref|XP_004161169.1| PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/529 (77%), Positives = 462/529 (87%), Gaps = 1/529 (0%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
MSAYIVGVLVP+V TL RNSKK KKRG+PVD GG+PG A+RN + V T+WEGI TL
Sbjct: 1 MSAYIVGVLVPVVVTLFFRNSKKAKKRGLPVDAGGDPGFAVRNSKCPEPVETAWEGIFTL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
AELFE SCK+H D+ LLGTR+LI +ETEV +GRSFEK HLG+YEWLTYGQAFE +C+FA
Sbjct: 61 AELFEYSCKQHQDRRLLGTRKLIEKETEVTADGRSFEKFHLGDYEWLTYGQAFEAVCSFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGL Q+GH K ER AIFADTR EWF+ALQGCFRRN+TVVTIYASLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHNKGERAAIFADTREEWFIALQGCFRRNITVVTIYASLGEEALCHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICG KEL KL+ +SGQL TVK+V+CMD IP ++ + E +G WKITSFA VQ+LG+E
Sbjct: 181 TVICGQKELSKLLGISGQLKTVKNVVCMD-EIPQSIINSEPNGNWKITSFAKVQLLGQEC 239
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
V A+ P+SAD+AVIMYTSGSTGLPKGVMMTH NVLATVSAVMTIVP LG KD YLAYLP
Sbjct: 240 NVGAELPMSADIAVIMYTSGSTGLPKGVMMTHANVLATVSAVMTIVPGLGKKDTYLAYLP 299
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
+AH+LEL AEN++AGVG AIGYG+PLTLTDTS+K+K+GT+GDA+ L PTVM +VPAILDR
Sbjct: 300 MAHILELAAENVMAGVGCAIGYGSPLTLTDTSNKVKRGTKGDATALVPTVMTAVPAILDR 359
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VR+GV KKV+ GGL+KKLFDLAY+RRLSA+NGSWFGAWGLE LLWN LVF KV+AILGG
Sbjct: 360 VREGVLKKVNGTGGLAKKLFDLAYSRRLSAMNGSWFGAWGLEMLLWNFLVFRKVQAILGG 419
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
R+RF+LSGGAPLS DTQRFINICL APIGQGYGLTETCAGGTFSE DD +VGRVGAPLPC
Sbjct: 420 RLRFLLSGGAPLSGDTQRFINICLSAPIGQGYGLTETCAGGTFSEFDDLTVGRVGAPLPC 479
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
SF+KLIDWPEGGYLTSD P PRGEIVI GPNVT+GYFKNEEK K V KV
Sbjct: 480 SFVKLIDWPEGGYLTSDLPRPRGEIVIGGPNVTLGYFKNEEKLKNVAKV 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 541 | ||||||
| TAIR|locus:2204765 | 691 | LACS9 "AT1G77590" [Arabidopsis | 0.968 | 0.758 | 0.773 | 2.4e-227 | |
| TAIR|locus:2058384 | 720 | LACS8 "AT2G04350" [Arabidopsis | 0.970 | 0.729 | 0.619 | 2.6e-182 | |
| UNIPROTKB|F1MBW3 | 722 | ACSL4 "Uncharacterized protein | 0.955 | 0.716 | 0.467 | 1.3e-118 | |
| UNIPROTKB|F1SR72 | 720 | ACSL3 "Uncharacterized protein | 0.944 | 0.709 | 0.467 | 8.8e-118 | |
| UNIPROTKB|O60488 | 711 | ACSL4 "Long-chain-fatty-acid-- | 0.953 | 0.725 | 0.464 | 1.1e-117 | |
| UNIPROTKB|J9P9G0 | 720 | ACSL3 "Uncharacterized protein | 0.946 | 0.711 | 0.464 | 6.2e-117 | |
| UNIPROTKB|F1PEH9 | 670 | ACSL4 "Uncharacterized protein | 0.896 | 0.723 | 0.484 | 7.9e-117 | |
| ZFIN|ZDB-GENE-030131-492 | 723 | acsl3b "acyl-CoA synthetase lo | 0.909 | 0.680 | 0.480 | 1.3e-116 | |
| UNIPROTKB|F1MEX9 | 720 | ACSL3 "Uncharacterized protein | 0.946 | 0.711 | 0.458 | 2.7e-116 | |
| RGD|70552 | 720 | Acsl3 "acyl-CoA synthetase lon | 0.944 | 0.709 | 0.465 | 4.4e-116 |
| TAIR|locus:2204765 LACS9 "AT1G77590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2194 (777.4 bits), Expect = 2.4e-227, P = 2.4e-227
Identities = 409/529 (77%), Positives = 469/529 (88%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
M Y GV+VPL T L++ SKKEKKRG+ VDVGGEPG+A+RN RFT VS+ WE ISTL
Sbjct: 1 MIPYAAGVIVPLALTFLVQKSKKEKKRGVVVDVGGEPGYAIRNHRFTEPVSSHWEHISTL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
ELFE SC H D+ LGTR+LISRE E +++G++FEKLHLG+YEWLT+G+ E +C+FA
Sbjct: 61 PELFEISCNAHSDRVFLGTRKLISREIETSEDGKTFEKLHLGDYEWLTFGKTLEAVCDFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGL Q+GHK EERVAIFADTR EWF++LQGCFRRNVTVVTIY+SLGEEALC+SLNETEVT
Sbjct: 121 SGLVQIGHKTEERVAIFADTREEWFISLQGCFRRNVTVVTIYSSLGEEALCHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVICGSKELKKL+D+S QL+TVK VICMD PS V+S W TSF DVQ LGREN
Sbjct: 181 TVICGSKELKKLMDISQQLETVKRVICMDDEFPSDVNS-----NWMATSFTDVQKLGREN 235
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
PVD ++P+SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG +D+Y+AYLP
Sbjct: 236 PVDPNFPLSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGKRDIYMAYLP 295
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
LAH+LEL AE+++A +GSAIGYG+PLTLTDTS+KIKKGT+GD + L+PT+M +VPAILDR
Sbjct: 296 LAHILELAAESVMATIGSAIGYGSPLTLTDTSNKIKKGTKGDVTALKPTIMTAVPAILDR 355
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VRDGVRKKVDAKGGLSKKLFD AYARRLSAINGSWFGAWGLEKLLW++LVF K+RA+LGG
Sbjct: 356 VRDGVRKKVDAKGGLSKKLFDFAYARRLSAINGSWFGAWGLEKLLWDVLVFRKIRAVLGG 415
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
+IR++LSGGAPLS DTQRFINIC+GAPIGQGYGLTETCAGGTFSE +D+SVGRVGAPLPC
Sbjct: 416 QIRYLLSGGAPLSGDTQRFINICVGAPIGQGYGLTETCAGGTFSEFEDTSVGRVGAPLPC 475
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
SF+KL+DW EGGYLTSD PMPRGEIVI G N+T+GYFKNEEKTKEVYKV
Sbjct: 476 SFVKLVDWAEGGYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKV 524
|
|
| TAIR|locus:2058384 LACS8 "AT2G04350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1769 (627.8 bits), Expect = 2.6e-182, P = 2.6e-182
Identities = 326/526 (61%), Positives = 413/526 (78%)
Query: 5 IVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELF 64
IV +LVP++ +++L +KK KKRG+P+ VGGE G+ +R+ R LV WEG +T+ LF
Sbjct: 28 IVALLVPVLLSVVLNGTKKGKKRGVPIKVGGEEGYTMRHARAPELVDVPWEGAATMPALF 87
Query: 65 EQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA 124
EQSCK++ LLGTR+ I +E A +GR FEKLHLGEY+W +YG+ FE +CNFASGL
Sbjct: 88 EQSCKKYSKDRLLGTREFIDKEFITASDGRKFEKLHLGEYKWQSYGEVFERVCNFASGLV 147
Query: 125 QLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC 184
+GH ++RVAIF+DTRAEWF+A QGCFR+++TVVTIYASLGEEAL YSLNET V+T+IC
Sbjct: 148 NVGHNVDDRVAIFSDTRAEWFIAFQGCFRQSITVVTIYASLGEEALIYSLNETRVSTLIC 207
Query: 185 GSKELKKLVDLSGQLDTVKHVICMDAN-IPSAVSSVEQSGRWKITSFADVQILGRENPVD 243
SK+LKKL + L TVK++I ++ + + A S V G ++S ++V+ LG++N V
Sbjct: 208 DSKQLKKLSAIQSSLKTVKNIIYIEEDGVDVASSDVNSMGDITVSSISEVEKLGQKNAVQ 267
Query: 244 ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
P VAVIM+TSGSTGLPKGVM+THGN++AT + VM +VP L D Y+AYLPLAH
Sbjct: 268 PILPSKNGVAVIMFTSGSTGLPKGVMITHGNLVATAAGVMKVVPKLDKNDTYIAYLPLAH 327
Query: 304 VLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363
V EL AE ++ GSAIGYG+ +TLTDTS+K+KKGT+GD S L+PT+M +VPAILDRVR+
Sbjct: 328 VFELEAEIVVFTSGSAIGYGSAMTLTDTSNKVKKGTKGDVSALKPTIMTAVPAILDRVRE 387
Query: 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIR 423
GV KKV+ KGG++K LFD AY RRL+A++GSWFGAWGLEK+LW+ LVF K+RA+LGG IR
Sbjct: 388 GVLKKVEEKGGMAKTLFDFAYKRRLAAVDGSWFGAWGLEKMLWDALVFKKIRAVLGGHIR 447
Query: 424 FILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
F+L GGAPLS D+QRFINIC+G+PIGQGYGLTETCAG TFSE DD +VGRVG PLPC ++
Sbjct: 448 FMLVGGAPLSPDSQRFINICMGSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYV 507
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
KL+ W EGGY SD PMPRGEIV+ G +VT GYF N+EKT EVYKV
Sbjct: 508 KLVSWEEGGYRISDKPMPRGEIVVGGNSVTAGYFNNQEKTDEVYKV 553
|
|
| UNIPROTKB|F1MBW3 ACSL4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
Identities = 251/537 (46%), Positives = 334/537 (62%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEK---KRGIPVDVGGEPGHALRNC-RFTSLVSTSWEG 56
++ Y + +P F L N+KK+ KR +PG R+ F SL G
Sbjct: 30 ITIYSALIFIPWYF---LTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPG 86
Query: 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
TL +LF+ + + G K LGTR+++S E E+ NG+ F+KL LG Y+WL Y + +
Sbjct: 87 ADTLDKLFDHAVSKFGKKESLGTREVLSEENEMQPNGKVFKKLILGNYKWLNYLEVNRRV 146
Query: 117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
NF SGL LG K + +AIF +TRAEW +A Q CF+ N +VT+YA+LG EA+ + LNE
Sbjct: 147 NNFGSGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNE 206
Query: 177 TEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQI 235
+E T +I + L+ KL ++ VKH+I +D N ++ E ++I S V+
Sbjct: 207 SEATYLITSVELLESKLKTALIDINCVKHIIYVD-N--KTINKAEYPEGFEIHSMQSVEE 263
Query: 236 LGR--EN-PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292
LG EN V + P +D+A++MYTSGSTG PKGVMM H N++A ++ +P LG K
Sbjct: 264 LGSKPENLSVSPNRPTPSDLAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPK 323
Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMA 352
D Y+ YLPLAHVLEL AE G IGY +PLTL+D SSKIKKG++GD +VL+PT+MA
Sbjct: 324 DTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMA 383
Query: 353 SVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFS 412
+VP I+DR+ V KV + K LF + Y +L I G + L NL++F
Sbjct: 384 AVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCNLILFK 437
Query: 413 KVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVG 472
KV+A+LGG +R +LSGGAPLS TQRF+N+C P+GQGYGLTETC GT +EV D + G
Sbjct: 438 KVKALLGGNVRMMLSGGAPLSPQTQRFMNVCFCCPVGQGYGLTETCGAGTVTEVTDYTTG 497
Query: 473 RVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
RVGAPL C IKL DW EGGY D P PRGEIVI G N+++GYFKNEEKT E Y V
Sbjct: 498 RVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGKNISMGYFKNEEKTAEDYSV 554
|
|
| UNIPROTKB|F1SR72 ACSL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
Identities = 248/531 (46%), Positives = 333/531 (62%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCR-FTSLVSTSWEGIS 58
+S Y + +P F L S++EK I V +P A R+ L S + G
Sbjct: 30 ISLYTILTYIPYYF---LSESRQEKSNRIKAKPVNSKPESAYRSVNSLDGLASVLYPGCD 86
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
TL ++F + + DK LLGTR++++ E EV NG+ F+K+ LG Y WL+Y + F N
Sbjct: 87 TLDKVFMHAKNKFKDKSLLGTREVLNEEDEVQPNGKIFKKVILGNYNWLSYEEVFVRASN 146
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
F +GL LG K + +AIF +TRAEW +A Q CF N +VT+YA+LG A+ + LNETE
Sbjct: 147 FGNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETE 206
Query: 179 VTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
VT +I SKEL KL D+ + ++H+I +D P A S + + + A VQ L
Sbjct: 207 VTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGK-PPAWSEFPKGVI--VHTMAAVQAL 262
Query: 237 GRENPVD---ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
G + V+ P+ D+AVIMYTSGSTGLPKGVM++H N++A ++ + +P+LG KD
Sbjct: 263 GAKASVENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPELGEKD 322
Query: 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
VY+ YLPLAHVLEL AE + G IGY +P TL D SSKIKKG++GDAS+L+PT+MA+
Sbjct: 323 VYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDASMLKPTLMAA 382
Query: 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
VP I+DR+ V KV+ + LF LAY ++ I+ G L + +F K
Sbjct: 383 VPEIMDRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISK------GCSTPLCDRFIFRK 436
Query: 414 VRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
VR++LGG R +L GGAPLSA TQRF+NIC P+GQGYGLTE+ GT +EV D + GR
Sbjct: 437 VRSLLGGNTRLLLCGGAPLSAATQRFMNICFCCPVGQGYGLTESSGAGTITEVWDYNTGR 496
Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
VGAPL C IKL +W EGGY +D P PRGEI+I G NVT+GY+KNE KTK
Sbjct: 497 VGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTK 547
|
|
| UNIPROTKB|O60488 ACSL4 "Long-chain-fatty-acid--CoA ligase 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 250/538 (46%), Positives = 335/538 (62%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEK---KRGIPVDVGGEPGHALRNC-RFTSLVSTSWEG 56
++ Y + +P F L N+KK+ KR +PG R+ F SL G
Sbjct: 19 ITIYSALIFIPWYF---LTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPG 75
Query: 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
TL +LF+ + + G K LGTR+++S E E+ NG+ F+KL LG Y+W+ Y + +
Sbjct: 76 ADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRV 135
Query: 117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
NF SGL LG K + +AIF +TRAEW +A Q CF+ N +VT+YA+LG+EA+ + LNE
Sbjct: 136 NNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNE 195
Query: 177 TEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQI 235
+E + +I + L+ KL + VKH+I +D N A++ E ++I S V+
Sbjct: 196 SEASYLITSVELLESKLKTALLDISCVKHIIYVD-N--KAINKAEYPEGFEIHSMQSVEE 252
Query: 236 LGRENPVDADYPVS----ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291
LG NP + P S +D+A++MYTSGSTG PKGVMM H N++A ++ +P LG
Sbjct: 253 LG-SNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGP 311
Query: 292 KDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVM 351
KD Y+ YLPLAHVLEL AE G IGY +PLTL+D SSKIKKG++GD +VL+PT+M
Sbjct: 312 KDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLM 371
Query: 352 ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVF 411
A+VP I+DR+ V KV + K LF + Y +L I G + L NLL+F
Sbjct: 372 AAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKK------GYDAPLCNLLLF 425
Query: 412 SKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSV 471
KV+A+LGG +R +LSGGAPLS T RF+N+C PIGQGYGLTE+C GT +EV D +
Sbjct: 426 KKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTT 485
Query: 472 GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
GRVGAPL C IKL DW EGGY +D P PRGEIVI G N+++GYFKNEEKT E Y V
Sbjct: 486 GRVGAPLICCEIKLKDWQEGGYTINDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYSV 543
|
|
| UNIPROTKB|J9P9G0 ACSL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
Identities = 246/530 (46%), Positives = 328/530 (61%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
+S Y V +P F R K K + PV+ +P A R+ L S + G T
Sbjct: 30 ISLYTVFTYIPYYFLFETRQEKSNKIKAKPVN--SKPESAYRSINSLDGLASVLYPGCDT 87
Query: 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
L ++F + + DK LLGTR+++S + EV NG+ F+K+ LG Y WL+Y F NF
Sbjct: 88 LDKVFMYAKNKFKDKKLLGTREILSEDDEVQPNGKIFKKVILGNYNWLSYEDVFVRAFNF 147
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
+GL LG K + +AIF +TRAEW +A Q CF N +VT+YA+LG A+ + LNETEV
Sbjct: 148 GNGLQMLGQKPKTNIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEV 207
Query: 180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
T +I SKEL KL D+ + ++H+I +D P+ S G + + A VQ LG
Sbjct: 208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGVI-VHTMAAVQALG 263
Query: 238 RENPVD---ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
+ + P+ D+AVIMYTSGSTGLPKGVM++H N++A ++ + +P LG DV
Sbjct: 264 AKASTENKPQSKPMPLDIAVIMYTSGSTGLPKGVMISHSNIIAGITGMAERIPGLGEGDV 323
Query: 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
Y+ YLPLAHVLEL AE + G IGY +P TL D SSKIKKG++GD ++L+PT+MA+V
Sbjct: 324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTTMLKPTLMAAV 383
Query: 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
P I+DR+ V KV+ + LF LAY ++ I+ G L + +F KV
Sbjct: 384 PEIMDRIYKNVMNKVNEMSSFQRNLFVLAYNYKMEQISR------GHGTPLCDRFIFRKV 437
Query: 415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
R +LGG IR +L GGAPLSA TQRF+NIC P+GQGYGLTE+C GT +EV D + GRV
Sbjct: 438 RGLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGTITEVWDYNTGRV 497
Query: 475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
GAPL C IKL +W EGGY +D P PRGEI+I G NVT+GY+KNE KTK
Sbjct: 498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTIGYYKNEAKTK 547
|
|
| UNIPROTKB|F1PEH9 ACSL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 242/499 (48%), Positives = 321/499 (64%)
Query: 36 EPGHALRNC-RFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGR 94
+PG R+ F SL G TL +LF+ + + G K LGTR+++S E E+ NG+
Sbjct: 13 KPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGK 72
Query: 95 SFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRR 154
F+KL LG Y+W++Y + + NF SGL LG K + +AIF +TRAEW +A Q CF+
Sbjct: 73 VFKKLILGSYKWMSYLEVNCRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKY 132
Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-KLVDLSGQLDTVKHVICMDANIP 213
N +VT+YA+LG+EA+ + LNE+E T +I + L+ KL ++ VKH+I +D N
Sbjct: 133 NFPLVTLYATLGKEAVVHGLNESEATYLITSVELLESKLKTALLDINCVKHIIYVD-N-- 189
Query: 214 SAVSSVEQSGRWKITSFADVQILGR--EN-PVDADYPVSADVAVIMYTSGSTGLPKGVMM 270
++ VE ++I S V+ LG EN V + P +D+A++MYTSGSTG PKGVMM
Sbjct: 190 KTINKVEYPEGFEIHSMQSVEELGSKPENLSVPPNRPTPSDMAIVMYTSGSTGRPKGVMM 249
Query: 271 THGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTD 330
H N++A ++ +P LG KD Y+ YLPLAHVLEL AE G IGY +PLTL+D
Sbjct: 250 HHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSD 309
Query: 331 TSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSA 390
SSKIKKG++GD +VL+PT+MA+VP I+DR+ V KV + K LF L Y +L
Sbjct: 310 QSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKLGYDYKLEQ 369
Query: 391 INGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450
I G + L NLL+F KV+A+LGG +R +LSGGAPLS T RF+N+C P+GQ
Sbjct: 370 IKK------GYDAPLCNLLLFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPVGQ 423
Query: 451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510
GYGLTE+C GT +EV D + GRVGAPL C IKL DW EGGY D P PRGEIVI G
Sbjct: 424 GYGLTESCGAGTVTEVTDYTTGRVGAPLICCEIKLKDWQEGGYTIHDKPNPRGEIVIGGQ 483
Query: 511 NVTVGYFKNEEKTKEVYKV 529
N+++GYFKNEEKT E Y V
Sbjct: 484 NISMGYFKNEEKTAEDYSV 502
|
|
| ZFIN|ZDB-GENE-030131-492 acsl3b "acyl-CoA synthetase long-chain family member 3b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 245/510 (48%), Positives = 330/510 (64%)
Query: 21 SKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTR 80
+K+ K R I + G P A+ N + L S EG+ TL ++FE + ++ LGTR
Sbjct: 55 AKRVKARAINGNPAG-PYRAV-NSQL-KLASLLHEGVDTLDKVFEYAVVHFPERDCLGTR 111
Query: 81 QLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT 140
+L+S E E+ NG+ F+K+ LG+Y WL+Y F F SGLA LG K +AIF +T
Sbjct: 112 ELLSEEDEIQPNGKVFKKVILGDYNWLSYQDTFHLAQRFGSGLAALGQKPLCNIAIFCET 171
Query: 141 RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQ 198
RAEW +A Q CF N +VT+Y++LG A+ + LNETEVT ++ SK+L +L + +
Sbjct: 172 RAEWVIAAQACFMYNFPLVTLYSTLGGSAIAHGLNETEVTHIVT-SKDLLQSRLKAILLE 230
Query: 199 LDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR--EN-PVDADYPVSADVAVI 255
+ +KH+I +D P++ + + + + A VQ LG EN V PV +D+AVI
Sbjct: 231 VPRLKHIIVVDTK-PTSWPDLPRG--IMVHNMAAVQELGSKPENIMVSRRQPVPSDIAVI 287
Query: 256 MYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAG 315
MYTSGSTG+PKGVM++H N++A ++ + +P+L D Y+ YLPLAHVLEL AE +
Sbjct: 288 MYTSGSTGIPKGVMISHSNIIAGITGMAERIPNLDENDTYIGYLPLAHVLELSAELVCVS 347
Query: 316 VGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL 375
G IGY +P TL D SSKIKKG++GD SVL+PT+MA+VP I+DR+ V KV+ +
Sbjct: 348 HGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAAVPEIMDRIYKNVMTKVEEMSSV 407
Query: 376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD 435
K LF LAY ++ I+ G L + LVF KVR++LGG R +LSGGAPLSA
Sbjct: 408 QKTLFVLAYNYKMEQISK------GYTTPLCDRLVFRKVRSLLGGNTRVLLSGGAPLSAA 461
Query: 436 TQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLT 495
TQRF+NIC P+GQGYGLTETC GT SE+ D S GRVGAPL CS I L DW EGGY +
Sbjct: 462 TQRFMNICFCCPVGQGYGLTETCGAGTISEMSDYSTGRVGAPLVCSEIMLKDWEEGGYFS 521
Query: 496 SDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
+D P PRGEI+I GPNVT+GY+KNE+K +E
Sbjct: 522 TDKPNPRGEILIGGPNVTMGYYKNEQKNRE 551
|
|
| UNIPROTKB|F1MEX9 ACSL3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 243/530 (45%), Positives = 329/530 (62%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCR-FTSLVSTSWEGIST 59
+S Y + +P F R K + + PV+ +P A R+ L S + G T
Sbjct: 30 ISLYTILTYIPYYFLSESRQEKSNRTKAKPVN--SKPDSAYRSVNSLDGLASVLYPGCDT 87
Query: 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
L ++F + + DK LLGTR++++ E EV NG+ F+K+ LG Y WL+Y F NF
Sbjct: 88 LDKVFMHAKNKFKDKRLLGTREILNEEDEVQPNGKVFKKVILGSYNWLSYEDVFVRAFNF 147
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
+GL LG K + +AIF +TRAEW VA Q CF N +VT+YA+LG A+ + LNETEV
Sbjct: 148 GNGLQMLGQKPKTNIAIFCETRAEWMVAAQACFMYNFQLVTLYATLGGPAIVHGLNETEV 207
Query: 180 TTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
T +I SKEL KL D+ + ++H+I +D P+ S G + + A V+ LG
Sbjct: 208 TNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGVI-VHTMAAVRALG 263
Query: 238 RENPVD---ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294
+ ++ P +D+AVIMYTSGSTG+PKGVM++H N++A ++ + +P+LG KDV
Sbjct: 264 AKASMENKPLSKPAPSDIAVIMYTSGSTGIPKGVMISHSNIIAGITGMAERIPELGEKDV 323
Query: 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354
Y+ YLPLAHVLEL AE + G IGY +P TL D KIKKG++GD S+L+PT+MA+V
Sbjct: 324 YIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQVFKIKKGSKGDTSMLKPTLMAAV 383
Query: 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
P I+DR+ V KV+ + LF LAY ++ I+ G L + +F KV
Sbjct: 384 PEIMDRIYKNVMNKVNEMSSFQRNLFILAYNYKMEQISK------GHSTPLCDSFIFRKV 437
Query: 415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRV 474
R +LGG IR +L GGAPLSA TQRF+NIC P+GQGYGLTE+C GT +EV D + GRV
Sbjct: 438 RGLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESCGAGTITEVWDYNTGRV 497
Query: 475 GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
GAPL C IKL +W EGGY +D P PRGEI+I G NVT+GY+KNE KTK
Sbjct: 498 GAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTK 547
|
|
| RGD|70552 Acsl3 "acyl-CoA synthetase long-chain family member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
Identities = 247/531 (46%), Positives = 331/531 (62%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVD-VGGEPGHALRNCR-FTSLVSTSWEGIS 58
+S Y + +P F L SK+EK I V +P A R+ L S + G
Sbjct: 30 ISLYTILTYIPFYF---LCESKQEKPNHIKAKPVSSKPDSAYRSVNSMDGLASVLYPGCD 86
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
TL ++F + + DK LLGTR++++ E E+ NG+ F+K+ LG Y WL+Y F +
Sbjct: 87 TLDKVFMYAKNKFKDKRLLGTREILNEEDEIQPNGKVFKKVILGHYNWLSYEDVFIRALD 146
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
F +GL LG K + +AIF +TRAEW +A Q CF N +VT+YA+LG A+ + LNETE
Sbjct: 147 FGNGLQMLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETE 206
Query: 179 VTTVICGSKEL--KKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
VT +I SKEL KL D+ + ++H+I +D P+ S G + + A VQ L
Sbjct: 207 VTNIIT-SKELLQTKLKDIVSLVPRLRHIITVDGKPPTW--SEFPKGVI-VHTMAAVQAL 262
Query: 237 GRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
G + VD P+ +D+AVIMYTSGSTG+PKGVM++H N++A+++ + +P LG +D
Sbjct: 263 GVKADVDKKAHSKPLPSDIAVIMYTSGSTGIPKGVMISHSNIIASITGMARRIPRLGEED 322
Query: 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
VY+ YLPLAHVLEL AE + G IGY +P TL D SSKIKKG++GD SVL+PT+MA+
Sbjct: 323 VYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSSKIKKGSKGDTSVLKPTLMAA 382
Query: 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
VP I+DR+ V KV+ + LF LAY ++ I+ G L + VF
Sbjct: 383 VPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISK------GCSTPLCDRFVFRN 436
Query: 414 VRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
VR +LGG IR +L GGAPLSA TQRF+NIC P+GQGYGLTE+ GT +EV D + GR
Sbjct: 437 VRRLLGGNIRVLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWDYNTGR 496
Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
VGAPL C IKL +W EGGY +D P PRGEI+I G NVT+GY+KNE KTK
Sbjct: 497 VGAPLVCCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTK 547
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9CAP8 | LACS9_ARATH | 6, ., 2, ., 1, ., 3 | 0.7731 | 0.9685 | 0.7583 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00015387001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (697 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00018681001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa) | • | 0.903 | ||||||||
| GSVIVG00038876001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa) | • | 0.899 | ||||||||
| GSVIVG00033040001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa) | • | 0.899 | ||||||||
| GSVIVG00009919001 | SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa) | • | 0.899 | ||||||||
| GSVIVG00009515001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa) | • | 0.899 | ||||||||
| GSVIVG00025319001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa) | • | 0.800 | ||||||||
| GSVIVG00019100001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa) | • | 0.800 | ||||||||
| GSVIVG00009528001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa) | • | 0.800 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 541 | |||
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-121 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-114 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-108 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-77 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 1e-76 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 6e-70 | |
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 1e-69 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 5e-68 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 4e-56 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-45 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 8e-41 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 2e-40 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 2e-36 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-33 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 2e-32 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 7e-31 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-30 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 3e-29 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 2e-27 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 3e-26 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 7e-26 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 8e-25 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-24 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 3e-23 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-22 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 1e-21 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 4e-21 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 3e-20 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 3e-20 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-19 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 3e-19 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 4e-19 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 7e-19 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 1e-18 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-18 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 2e-18 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 3e-18 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 3e-18 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 5e-17 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 8e-17 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 1e-16 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 1e-16 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 1e-16 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-16 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 4e-16 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 4e-16 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 6e-16 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 6e-16 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-15 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 3e-15 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 6e-15 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-14 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 2e-14 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 3e-14 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 6e-14 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-13 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 1e-13 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-13 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 5e-13 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 7e-13 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 8e-13 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-12 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-12 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 6e-12 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 1e-11 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 1e-11 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-11 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-11 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-11 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 3e-11 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 5e-11 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 5e-11 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 6e-11 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 9e-11 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 9e-11 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-10 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 1e-10 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 2e-10 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 4e-10 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 6e-10 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 6e-10 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 9e-10 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 1e-09 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 1e-09 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 1e-09 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-09 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 2e-09 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 2e-09 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 3e-09 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 4e-09 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-09 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 4e-09 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 6e-09 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 6e-09 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 1e-08 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-08 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 1e-08 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-08 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 2e-08 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-08 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 3e-08 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-08 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 4e-08 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 4e-08 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 5e-08 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 6e-08 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 6e-08 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 8e-08 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 1e-07 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 1e-07 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-07 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-07 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 2e-07 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 2e-07 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-07 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 3e-07 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 3e-07 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 3e-07 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 4e-07 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 4e-07 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 5e-07 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 5e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 7e-07 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 9e-07 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 1e-06 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 1e-06 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-06 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 2e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-06 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 2e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 2e-06 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-06 | |
| PRK07769 | 631 | PRK07769, PRK07769, long-chain-fatty-acid--CoA lig | 2e-06 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 3e-06 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 3e-06 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 3e-06 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 4e-06 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 6e-06 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 7e-06 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 8e-06 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 9e-06 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 1e-05 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 1e-05 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-05 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 2e-05 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 3e-05 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-05 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 4e-05 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-05 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 7e-05 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 9e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 9e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-04 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-04 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 2e-04 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 2e-04 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-04 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 2e-04 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 2e-04 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 3e-04 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 3e-04 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 4e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 4e-04 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 6e-04 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 7e-04 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 0.001 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 0.001 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 0.001 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 0.001 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 0.001 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 0.001 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 0.001 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 0.002 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.002 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 0.002 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 0.003 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.003 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.003 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 0.003 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 0.003 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 0.004 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 1053 bits (2724), Expect = 0.0
Identities = 404/529 (76%), Positives = 462/529 (87%)
Query: 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDVGGEPGHALRNCRFTSLVSTSWEGISTL 60
M AYIVGVLVPL+ TLLLR SKK KKRG+PVDVGGEPG+A+RN RF LV T WEG +TL
Sbjct: 1 MGAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEPGYAIRNARFPELVETPWEGATTL 60
Query: 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFA 120
A LFEQSCK++ DK LLGTR+LISRE E + +GR FEKLHLGEYEW+TYGQ FE +CNFA
Sbjct: 61 AALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFA 120
Query: 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180
SGL LGH KEERVAIFADTRAEW +ALQGCFR+N+TVVTIYASLGEEALC+SLNETEVT
Sbjct: 121 SGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVT 180
Query: 181 TVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN 240
TVIC SK+LKKL+D+S QL+TVK VI MD + SS+ S W ++SF++V+ LG+EN
Sbjct: 181 TVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKEN 240
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLP 300
PVD D P D+AVIMYTSGSTGLPKGVMMTHGN++ATV+ VMT+VP LG DVYLAYLP
Sbjct: 241 PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLP 300
Query: 301 LAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360
LAH+LEL AE+++A VG+AIGYG+PLTLTDTS+KIKKGT+GDAS L+PT+M +VPAILDR
Sbjct: 301 LAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDR 360
Query: 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG 420
VRDGVRKKVDAKGGL+KKLFD+AY RRL+AI GSWFGAWGLEKLLW+ LVF K+RA+LGG
Sbjct: 361 VRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGG 420
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
RIRF+LSGGAPLS DTQRFINICLGAPIGQGYGLTETCAG TFSE DD+SVGRVG PLPC
Sbjct: 421 RIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPC 480
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
++KL+ W EGGYL SD PMPRGEIVI GP+VT+GYFKN+EKT EVYKV
Sbjct: 481 CYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKV 529
|
Length = 696 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 532 bits (1374), Expect = 0.0
Identities = 192/428 (44%), Positives = 257/428 (60%), Gaps = 53/428 (12%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G YEW++Y + E N SGL LG K +++ IFA+ R EW + Q CF +++ +V +
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
Y +LGEEA+ Y LNETE++ V C +
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDA----------------------------------- 85
Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
K+ SF +++ LG++N V P D+A IMYTSG+TG PKGVM+THGN++A V+
Sbjct: 86 ---VKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 282 VMTIVPD-LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQ 340
+ IVP+ +G DVY++YLPLAH+ E V EN+ +G IGY + T +G +
Sbjct: 143 INKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT---------RGLK 193
Query: 341 GDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
GD L+PTV VP +LDR+ G+ KV+AKGGL + LF+ AY +L+A+ G
Sbjct: 194 GDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRGH----G 249
Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460
LW+ LVF K++A LGGR+R +LSGGAPLS DTQ F+ + LG P+ QGYGLTETCAG
Sbjct: 250 YASPLWDKLVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAG 309
Query: 461 GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520
GT S+ D++ G VG PLPC IKL+D PE GY D P PRGEI I GPNV GY+KN
Sbjct: 310 GTLSDPGDTTTGHVGPPLPCCEIKLVDVPEMGYFAKDDP-PRGEICIRGPNVFKGYYKNP 368
Query: 521 EKTKEVYK 528
EKT E +
Sbjct: 369 EKTAEAFD 376
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 370 bits (953), Expect = e-121
Identities = 181/481 (37%), Positives = 267/481 (55%), Gaps = 32/481 (6%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQL--ISRETEVADNG--RSFEKLHLGEYEWLTYGQAFE 114
+ E+ CKE GD+ L R + + +E +G R+ E H E ++TY + +E
Sbjct: 70 NFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWE 129
Query: 115 TICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSL 174
I NF GLA+LG K VAI+ +TR EW ++ G + +++ T+YA+LGE+AL Y+L
Sbjct: 130 RIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYAL 189
Query: 175 NETEVTTVICGSKELKKLVDL--SGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFAD 232
ETE ++C K + L+ L SG + +I +D+ +P++V + ++ ++ D
Sbjct: 190 RETECKAIVCNGKNVPNLLRLMKSGGMPNTT-IIYLDS-LPASVDTEG----CRLVAWTD 243
Query: 233 VQILGRENPVDADYPVSA---DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289
V G + D+A+IMYTSG+TG PKGVM THG++ A + A+ + DL
Sbjct: 244 VVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDL 303
Query: 290 -GSK---DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV 345
G + Y +YLPLAH++E N+ G+ IG+G+P TLTDT ++ GD +
Sbjct: 304 IGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFAR----PHGDLTE 359
Query: 346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLL 405
RP + VP I D ++ V K+ G L +++FD AY RL A+ G +
Sbjct: 360 FRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE------GKDTPY 413
Query: 406 WNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSE 465
WN VFS RA+LGGR+R +LSGG PLSA TQ F+N+ G + QG+GLTET G
Sbjct: 414 WNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQR 472
Query: 466 VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
D VG L +KL+D E Y +D+P PRGEI++ GP + GY+K EE T+E
Sbjct: 473 TGDLEPNAVGQLLKGVEMKLLDTEE--YKHTDTPEPRGEILLRGPFLFKGYYKQEELTRE 530
Query: 526 V 526
V
Sbjct: 531 V 531
|
Length = 700 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 352 bits (905), Expect = e-114
Identities = 160/488 (32%), Positives = 226/488 (46%), Gaps = 57/488 (11%)
Query: 49 LVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLT 108
+S +WE + + E +G + LG +E +T
Sbjct: 4 RISMAWEDV-AEIHTLPKRLAERVKDR---------------PDGVALMYKELGGWEAIT 47
Query: 109 YGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEE 168
Y + +E + ASGL LG +RVAIFA R EW +A V IY++ E
Sbjct: 48 YRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPE 107
Query: 169 ALCYSLNETEVTTVICGSKELKKLV-DLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
L Y LNE+E + ++EL LV + V +I + + AV + +
Sbjct: 108 QLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAK----ALVL 163
Query: 228 TSFADVQI-----LGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
F D I P D+A I+YTSG+TG PKGVM+TH N+LA V+ +
Sbjct: 164 EVFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGI 223
Query: 283 MTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
++P +G D L++LPLAH+ E E +A YG L + D
Sbjct: 224 DEVLPPIGPGDRVLSFLPLAHIFERAFEGGLA------LYGGVTVLFKEDPRTLL---ED 274
Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLF----DLAYARRLSAINGSWFGA 398
+RPTVM VP + ++V G+ +KV + +KLF +AY + A+ G +
Sbjct: 275 LKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLS 334
Query: 399 WGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETC 458
W L+ + LVF K+R LGGRIR+ LSGGAPLS + F LG PI +GYGLTET
Sbjct: 335 W---LLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRS-LGIPILEGYGLTETS 390
Query: 459 AGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518
A + + D +G VG PLP +K+ D GEI++ GPNV GY+K
Sbjct: 391 AVVSVNPPDRFVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYK 436
Query: 519 NEEKTKEV 526
N E T E
Sbjct: 437 NPEATAEA 444
|
Length = 613 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 337 bits (866), Expect = e-108
Identities = 165/477 (34%), Positives = 254/477 (53%), Gaps = 42/477 (8%)
Query: 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFET 115
I TL + F + + D LGTR + +G +GEY+W+TYG+A
Sbjct: 42 EIGTLHDNFVYAVETFRDYKYLGTR--------IRVDGT------VGEYKWMTYGEAGTA 87
Query: 116 ICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLN 175
SGL Q G K V ++ R EW + C + V +Y +LG +A+ + +N
Sbjct: 88 RTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVN 147
Query: 176 ETEVTTVICGSKELKKLVDLSGQLDTVKHVIC---MDANIPSAVSSVEQSGRWKITSFAD 232
EV + C + L L+ ++ +V+ ++ D +PS S +I +++
Sbjct: 148 HAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGV----EIVTYSK 203
Query: 233 VQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292
+ GR +P P DVA I YTSG+TG PKGV++THGN++A V+ ++
Sbjct: 204 LLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGS-SLSTKFYPS 262
Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTV 350
DV+++YLPLAH+ E V + ++ G A+G+ G L L D D + LRPT+
Sbjct: 263 DVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMD-----------DLAALRPTI 311
Query: 351 MASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAY-ARRLSAINGSWFGAWGLEKLLWNLL 409
SVP + +R+ DG+ V GGL ++LF+ AY A++ + NG +W+ L
Sbjct: 312 FCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSP------MWDRL 365
Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDS 469
VF+K++A LGGR+RF+ SG +PLS D F+ IC G + +GYG+TET + + D+
Sbjct: 366 VFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDN 425
Query: 470 SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
G VG+P P +KL+D PE Y + D P PRGEI + GP + GY+K+E +T+EV
Sbjct: 426 LSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREV 482
|
Length = 651 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 1e-77
Identities = 120/425 (28%), Positives = 178/425 (41%), Gaps = 119/425 (28%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G ++ +T+ + E + A+GL LG K +RVAI A+ R EW +A V I
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
Y + E E+ +++ SG + V D
Sbjct: 61 YPTSSPE-------------------EVAYILNDSG----ARVVFVEDK----------- 86
Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
D+A ++YTSG+TG PKGVM+TH N+LA +A
Sbjct: 87 ---------------------------PDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAA 119
Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
++ ++P L D L++LPLAHV E G + G + ++ + + +
Sbjct: 120 LLEVIP-LSPGDRVLSFLPLAHVFEQR-----LGEYLPLSSGARVNFAESPETLLEDLR- 172
Query: 342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
+RPTV +VP + +++ G+ KV A G L +KLF
Sbjct: 173 ---EVRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFR-------------------- 209
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGG 461
A+ GGR+RF +SGGAPL + F LG PI +GYGLTET
Sbjct: 210 -------------WALGGGRLRFAVSGGAPLPPEVLEFFRA-LGIPILEGYGLTETSGVA 255
Query: 462 TFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
T + D +G VG PLP +++ + GEI++ GPNV GY+KN E
Sbjct: 256 TVNRPGDIRIGTVGKPLPGVEVRIAE--------------DGEILVRGPNVMKGYYKNPE 301
Query: 522 KTKEV 526
T E
Sbjct: 302 ATAEA 306
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 1e-76
Identities = 151/487 (31%), Positives = 249/487 (51%), Gaps = 44/487 (9%)
Query: 50 VSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTY 109
++T+W+ +F +S +++ D +LG R+++ +G+ +G Y W TY
Sbjct: 41 ITTAWD-------IFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTY 79
Query: 110 GQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEA 169
+ +E + S L G + RV I+ +W VA++ C ++ V +Y +LG A
Sbjct: 80 KEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGA 139
Query: 170 LCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDANIPSAVSSVEQSGRWKIT 228
+ Y ++ E+ V K++K+L++ +K ++ + Q G K
Sbjct: 140 VDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIG-VKTY 198
Query: 229 SFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288
S+ D +G+ENP + + P D+ IMYTSG++G PKGV++TH V V V +
Sbjct: 199 SWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQ 258
Query: 289 LGSK----DVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGD 342
K DVYL++LPLAH+L+ + E G+++GY G L D D
Sbjct: 259 FEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRD-----------D 307
Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
L+PT++A VP + +R+ +G++K + + +F+ Y +L+ +N +
Sbjct: 308 LMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKA-- 365
Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
+ + L F KV+A LGGR+R ++SGGAPLS + + F+ + A + QGYGLTET T
Sbjct: 366 SPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTT 425
Query: 463 FSEVDDSS-VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
D+ +G VGAP + ++L + PE GY P PRGEI + G + GY+KN E
Sbjct: 426 LGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEP-PRGEICVRGKCLFSGYYKNPE 484
Query: 522 KTKEVYK 528
T+EV K
Sbjct: 485 LTEEVMK 491
|
Length = 660 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 6e-70
Identities = 108/423 (25%), Positives = 156/423 (36%), Gaps = 73/423 (17%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
TY + E A+ L LG +RVAI EW VA+ + V + SL
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
E L Y L ++E +I + L KL+++ +L + +I + + +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDD------- 113
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
A PVD D D+A I+YTSG+TG PKGVM+TH N+LA + +
Sbjct: 114 ELLAGASAEPPAPPVDPD-----DLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFG 168
Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLR 347
L D L LPL + + + G L L + +
Sbjct: 169 -LTPGDRVLLLLPLHFDG------SVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYK 221
Query: 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407
TV+ VP +L + +K L
Sbjct: 222 VTVLYGVPTLLRLLLKAPEEKKYDLSSL-------------------------------- 249
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEV 466
R +LSGG PL + +R G P+ GYG TET T +
Sbjct: 250 ---------------RLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLP 294
Query: 467 DD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
D G +G PLP +K++D EG + P GE+ I GP V GY + E T
Sbjct: 295 GDPEVKPGSIGRPLPGVEVKVLD-EEGEPV---PPGEVGELCIRGPGVARGYLNDPELTA 350
Query: 525 EVY 527
E +
Sbjct: 351 ERF 353
|
Length = 412 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 1e-69
Identities = 152/481 (31%), Positives = 248/481 (51%), Gaps = 37/481 (7%)
Query: 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFE 114
EG+ + ++F S +++ + +LG R+++ +G+ G+Y W TY + ++
Sbjct: 42 EGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGKP------GKYVWQTYQEVYD 87
Query: 115 TICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSL 174
+ + L +G K E + I+ EW ++++ C + V +Y +LG A+ + +
Sbjct: 88 IVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFII 147
Query: 175 NETEVTTVICGSKELKKLVDL-SGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADV 233
+ +EV+ V K++ +L + +K V+ E G I ++ +
Sbjct: 148 SHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFG-LVIYAWDEF 206
Query: 234 QILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD----L 289
LG D +D+ IMYTSG+TG PKGVM+++ +++ ++ V+ ++ L
Sbjct: 207 LKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAAL 266
Query: 290 GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPT 349
KDVYL+YLPLAH+ + V E G+AIG+ D I+ D L+PT
Sbjct: 267 TVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWR----GDVKLLIE-----DLGELKPT 317
Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE-KLLWNL 408
+ +VP +LDRV G++KK+ G L K +FD A++ + + G +E L +
Sbjct: 318 IFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKK---GQSHVEASPLCDK 374
Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
LVF+KV+ LGG +R ILSG APL++ + F+ + + QGYGLTE+CA GTF + D
Sbjct: 375 LVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCA-GTFVSLPD 433
Query: 469 S--SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
+G VG P+P I+L PE Y S PRGEI I G + GY+K E+ TKEV
Sbjct: 434 ELDMLGTVGPPVPNVDIRLESVPEMEYDALAS-TPRGEICIRGKTLFSGYYKREDLTKEV 492
Query: 527 Y 527
Sbjct: 493 L 493
|
Length = 666 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 5e-68
Identities = 148/496 (29%), Positives = 239/496 (48%), Gaps = 68/496 (13%)
Query: 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFE 114
I + + F + K++ + +LG RQ+ + G Y WLTY + ++
Sbjct: 40 ADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKV--------------GPYVWLTYKEVYD 85
Query: 115 TICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSL 174
S + G +R I+ EW +A++ C + +T V +Y +LG A+ + +
Sbjct: 86 AAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFII 145
Query: 175 NETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK-------- 226
N EV+ ++ + L + C +N+ + VS + S K
Sbjct: 146 NHAEVSIAFVQESKISSI------LSCLPK--C-SSNLKTIVSFGDVSSEQKEEAEELGV 196
Query: 227 -ITSFADVQILGRENPVDADYPVS--ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV- 282
S+ + ++G +D + P D+ IMYTSG+TG PKGV++T+ ++A V +
Sbjct: 197 SCFSWEEFSLMGS---LDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTD 253
Query: 283 -MTIVPD--LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKK 337
+ V D +D Y +YLPLAHV + V E G++IG+ G L +
Sbjct: 254 HLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLME------- 306
Query: 338 GTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFG 397
D L+PT+ VP + DR+ G+ +K+ + G L KKLFD AY +L +
Sbjct: 307 ----DVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRK---- 358
Query: 398 AWGLEKL----LWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG 453
GL++ + LVF K++ LGGR+R +LSG APL + F+ + + + QGYG
Sbjct: 359 --GLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYG 416
Query: 454 LTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511
LTE+C GG F+ + + S VG VG P+ +L PE GY + S +PRGEI + G
Sbjct: 417 LTESC-GGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGY-DALSDVPRGEICLRGNT 474
Query: 512 VTVGYFKNEEKTKEVY 527
+ GY K ++ T+EV
Sbjct: 475 LFSGYHKRQDLTEEVL 490
|
Length = 660 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 4e-56
Identities = 125/482 (25%), Positives = 183/482 (37%), Gaps = 91/482 (18%)
Query: 51 STSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYG 110
TLA L E++ + + D+ + GR LTY
Sbjct: 4 LMRMTAELTLASLLERAARRNPDR------------PALIFLGRGGR---------LTYR 42
Query: 111 QAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEAL 170
+ A+ L LG K +RVAI E+ +A R V + L L
Sbjct: 43 ELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPREL 102
Query: 171 CYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSF 230
Y LN+ +I ++ L ++ L V V+ + ++E
Sbjct: 103 AYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPD 162
Query: 231 ADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-PDL 289
AD PVD D D+A ++YTSG+TGLPKGV++TH N+LA + + + L
Sbjct: 163 AD------ARPVDPD-----DLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGL 211
Query: 290 GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPT 349
DV L++LPL H+ LI G+ + + G L L + + T
Sbjct: 212 TPDDVVLSWLPLFHIF-----GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVT 266
Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
V++ VP L + L
Sbjct: 267 VLSGVPTFLREL--------------------LDNP------------------------ 282
Query: 410 VFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
K L +R +LSGGAPL + +RF I +GYGLTET T + DD
Sbjct: 283 --EKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD 340
Query: 469 SS--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
G VG PLP ++++D P+GG + P GEI + GPNV GY+ E T E
Sbjct: 341 LLAKPGSVGRPLPGVEVRIVD-PDGGEVL---PGEVGEIWVRGPNVMKGYWNRPEATAEA 396
Query: 527 YK 528
+
Sbjct: 397 FD 398
|
Length = 534 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 3e-45
Identities = 113/424 (26%), Positives = 175/424 (41%), Gaps = 66/424 (15%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
T+ Q + A+ L LG + +R+AI + AEW +A + V +Y +L
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV-KHVICMDANIPSAVSSVEQSGRWK 226
E + Y L ++ + G KL D V + + + S + + W
Sbjct: 68 ETIRYVLEHSDAKALFVG-----KLDDWDAMKAGVPEGLPTIILFPYSTLKDHYK---WD 119
Query: 227 ITSFADVQILGRENPVDADY-PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
+L P+ P D+A I+YTSG+TG PKGVM++ G A +
Sbjct: 120 -------DLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGA-FAFAAQGTIE 171
Query: 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV 345
+ L D L+YLPLAH+ E V G ++ G + ++ D
Sbjct: 172 IIGLTPNDRLLSYLPLAHIAERVIV-----EGGSLYSGAEVFFVESLDTFAA----DLQR 222
Query: 346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLL 405
RPTV SVP + + + G+ K+ +KL L L+ +
Sbjct: 223 ARPTVFFSVPRLWTKFQQGILAKLPP-----EKLNLL------------------LKIPI 259
Query: 406 WNLLVFSKVRAILG-GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS 464
+ LV K+ LG + R SG AP+ + LG PI +GYG+TE A T +
Sbjct: 260 LSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMTENFAYSTLN 318
Query: 465 EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
D +G VG P+P +K+ S+ GEI+I P + GY+K+ EKT
Sbjct: 319 YPGDRRIGTVGKPIPGVELKI----------SED----GEILIRSPGLMSGYYKDPEKTA 364
Query: 525 EVYK 528
E +
Sbjct: 365 EAFT 368
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 8e-41
Identities = 120/444 (27%), Positives = 193/444 (43%), Gaps = 54/444 (12%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
+ LTY Q +E A +LG ++ V I EWF+A G V I
Sbjct: 4 DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIAVGI 63
Query: 162 YASLGEEALCYSLNETEVTT-VICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVE 220
Y + EA Y +E V+ +K+L+K++ + QL +K +I + ++
Sbjct: 64 YTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQYREPLKEKEPNLY 123
Query: 221 QSGRWKITSFADVQILGRENPVDADYPVSADV-----AVIMYTSGSTGLPKGVMMTHGNV 275
WK + LGR P + + ++YTSG+TG+PKGVM++H N+
Sbjct: 124 ---SWK-----EFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175
Query: 276 LATVSAV---MTIVPDLGSKDVYLAYLPLAHV-LELVAENLIAGVGSAIGYGTPLTLTDT 331
T A M + ++ ++YLPL+H+ +++ L VG + + P L
Sbjct: 176 TWTAKAAVKHMDLRTVG--QESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDAL--- 230
Query: 332 SSKIKKGTQGDA-SVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARR--- 387
KGT +RPT VP + +++++ ++ GL +K+ ++A+
Sbjct: 231 -----KGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIA--SWAKGVGL 283
Query: 388 ---LSAINGSW--FGAWGLEKLLWNLLVFSKVRAILG-GRIRFILSGGAPLSADTQRFIN 441
L + G + L K LVF KVR LG R + +G AP+S +T F
Sbjct: 284 ETNLKLMGGESPPPMCFRLAK----KLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF- 338
Query: 442 ICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP 501
+ L PI + YG++ET T S + + G LP K+ + G
Sbjct: 339 LSLNIPIMELYGMSETSGPHTVSNPQNYRLLSCGKALPGCETKIHNPDADGI-------- 390
Query: 502 RGEIVIAGPNVTVGYFKNEEKTKE 525
GEI I G +V +GY EEKT+E
Sbjct: 391 -GEICIWGRHVFMGYLNMEEKTEE 413
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-40
Identities = 111/483 (22%), Positives = 171/483 (35%), Gaps = 115/483 (23%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
T+ + ++H DK V +GR TY + E +
Sbjct: 7 TIGRILRHGARKHPDK------------EAVYFDGRRT-----------TYAELDERVNR 43
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
A+ L LG KK +RVA+F E+ A + + I L E + Y LN+ E
Sbjct: 44 LANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAE 103
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
V+ S+ + L + QL TV+ VI A + G + ++L
Sbjct: 104 DRVVLVDSEFVPLLAAILPQLPTVRTVIVEGD--GPAAPLAPEVGEY-------EELLAA 154
Query: 239 ENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
+ + D A ++YTSG+TG PKGV+++H N L S + L DVYL
Sbjct: 155 ASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRN-LFLHSLAVCAWLKLSRDDVYLV 213
Query: 298 YLPLAHVLELVAENLIAGVG-SAIGYGTPLTLTDT--SSKIKKGTQGDASVLRPTVMASV 354
+P+ HV G+ A+ G + + + + R T +V
Sbjct: 214 IVPMFHVHAW-------GLPYLALMAGAKQVIPRRFDPENLLDLIETE----RVTFFFAV 262
Query: 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
P I L K AY S
Sbjct: 263 PTIW--------------QMLLKAP--RAYFVDFS------------------------- 281
Query: 415 RAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
+R ++ GGA L + F G + QGYG+TET + +D G+
Sbjct: 282 ------SLRLVIYGGAALPPALLREFKEK-FGIDLVQGYGMTETSPVVSVLPPEDQLPGQ 334
Query: 474 ------VGAPLPCSFIKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVGYFKNEEK 522
G PLP +++D +G +P GEI++ GP + GY+ E
Sbjct: 335 WTKRRSAGRPLPGVEARIVD-DDG------DELPPDGGEVGEIIVRGPWLMQGYWNRPEA 387
Query: 523 TKE 525
T E
Sbjct: 388 TAE 390
|
Length = 521 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 120/482 (24%), Positives = 177/482 (36%), Gaps = 152/482 (31%)
Query: 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNF 119
LA+L E++ + D+ + GR LTY + E F
Sbjct: 1 LADLLERAARRFPDR------------PALTFFGRK-----------LTYAELDELSDRF 37
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
A+ L QLG KK +RVA+ ++ +A G + VV + L + LN++
Sbjct: 38 AAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGA 97
Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRE 239
+I SF D
Sbjct: 98 KVLIVA------------------------------------------ISFEDA----LA 111
Query: 240 NPVDADYPVSA---DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL-GSKDVY 295
+ PV D+AV+ YT G+TG+PKG M+TH N++A V + V DL +D +
Sbjct: 112 SGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRF 171
Query: 296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL------RPT 349
L LPL H+ L N++ G+ G L + +VL R T
Sbjct: 172 LTALPLFHIFGLTV-NMLLGLRL----GATNVL------VPN--FRPINVLKEIKRYRFT 218
Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
+ VP + Y L +K
Sbjct: 219 IFPGVPTL--------------------------YNALL--------NHPEFKKYD---- 240
Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
FS +R +SGGAPL + RF GAP+ +GYGLTET T + +D
Sbjct: 241 -FSSLR--------LCISGGAPLPVEVAERFEEK-TGAPLVEGYGLTETSPVTTVNPLDG 290
Query: 469 SS-VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTK 524
G +G PLP + +K++D EG + +P GE+V+ GP V GY+ E+T
Sbjct: 291 ERKPGSIGLPLPGTEVKIVD-DEG------NELPPGEVGELVVRGPQVMKGYWNRPEETA 343
Query: 525 EV 526
EV
Sbjct: 344 EV 345
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 79/279 (28%), Positives = 114/279 (40%), Gaps = 65/279 (23%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
D A I+YTSG+TG PKGV+++H N+LA A+ + L DV L+ LPL HV+ +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAI-GLTEGDVLLSVLPLFHVVGGGSG 59
Query: 311 N---LIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367
L+AG G+ + Y I++ R TV+ VP + D +
Sbjct: 60 LLGALLAG-GTVVLYEGFPFPLSFLELIEQ--------YRVTVLFGVPTLYDALAK---- 106
Query: 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILS 427
LS +R ++S
Sbjct: 107 ------------AAEDRGYDLS-------------------------------SLRLLIS 123
Query: 428 GGAPLSADTQRFINICLGAPIGQGYGLTETCAG-GTFSEVDDSSVGRVGAPLPCSFIKLI 486
GG PLS + GAPI +GYGLTET T + + G VG P+P ++++
Sbjct: 124 GGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVV 183
Query: 487 DWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
D EG L GE+V+ GP V GY+ N +T
Sbjct: 184 D-EEGKPLPPGEV---GELVVRGPWVMKGYWNNPPETTA 218
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-32
Identities = 103/428 (24%), Positives = 161/428 (37%), Gaps = 89/428 (20%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY + + A+GLA G +K + V + + E+ V V T
Sbjct: 33 LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYT 92
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ + ++ I S+ +KL L+ L+ V V+ A+ SA
Sbjct: 93 PAEIAKQVKDSGAKLAITTSELAEKLASLA--LEPV--VLLDSADDGSAAIDDLLFADE- 147
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
V ++ ++ DVA + Y+SG+TG KGVM+TH N++A V+ ++
Sbjct: 148 --PEPPVVVIKQD-----------DVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGE 194
Query: 287 -PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLT-----LTDTSSKIKKGTQ 340
P+ +DV L LP+ H+ L +I +G T + L + I+K
Sbjct: 195 GPNFDREDVTLCVLPMFHIYGL---TVILLALLRLG-ATVVVMPRFDLEKFLAAIEK--- 247
Query: 341 GDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
+ T + VP I+ + K + K +DL
Sbjct: 248 -----YKVTHLPVVPPIVLAL---------VKHPIVDK-YDL------------------ 274
Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCA 459
S ++ I SG APL + + F G +GQGYG+TE+
Sbjct: 275 -----------SSLKQIG--------SGAAPLGKELAEAFRARFPGVELGQGYGMTESSP 315
Query: 460 GGT--FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517
T D G VG +P K++D G S P GE+ + GP V GY
Sbjct: 316 VTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETG---ESLPPNQPGELWVRGPQVMKGYL 372
Query: 518 KNEEKTKE 525
N E T E
Sbjct: 373 NNPEATAE 380
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 7e-31
Identities = 102/436 (23%), Positives = 167/436 (38%), Gaps = 91/436 (20%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY + + + +L K+ E + I + +A V + + G
Sbjct: 8 LTYRKLLTASLALSRLIKKL-TKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAG 66
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSG--QLDTVKHVICMDANIPSAVSSVEQSGR 224
EE L + + + TVI L+KL L G L ++ ++ ++ + +S ++
Sbjct: 67 EEGLRSACKQAGIKTVITSRAFLEKL-KLEGLVVLLEGVRIVYLE-DLRAKISKADKLKA 124
Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284
+ + D D AVI++TSGS GLPKGV+++H N+LA + +
Sbjct: 125 FLAAKLPPALLRLFLAGAKPD-----DPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAA 179
Query: 285 IVPDLGSKDVYLAYLPLAHVLELVAEN---LIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
++ DL ++DV L LPL H L L+ G+ Y PL + I+
Sbjct: 180 VI-DLNTEDVLLGALPLFHAFGLTVTLLLPLLTGLRVVY-YPNPLDAKKIAELIRD---- 233
Query: 342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
+ T++ P L YAR
Sbjct: 234 ----YKATILCGTPTFLR-----------------------GYARN-------------- 252
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-----QRFINICLGAPIGQGYGLTE 456
+ FS +R +++G L T ++F G I +GYG TE
Sbjct: 253 ----AHPEDFS--------SLRLVVAGAEKLPEATRELFEEKF-----GIRILEGYGATE 295
Query: 457 TCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVT 513
+ + + G VG PLP ++++ PE +P GE +++ GPNV
Sbjct: 296 CSPVISVNTPMGNKPGTVGRPLPGIEVRIVS-PETH-----EELPIGEGGLLLVRGPNVM 349
Query: 514 VGYFKNEEKTKEVYKV 529
GY NEEKT EV +
Sbjct: 350 SGYLNNEEKTSEVEVL 365
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 107/438 (24%), Positives = 170/438 (38%), Gaps = 123/438 (28%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+T+ + E + + A LA LG KK +RVA+ E + + + V + L
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L + L++ EV +I KL+ I + +
Sbjct: 88 REELLWQLDDAEVKCLITDDDFEAKLI----------------PGISVKFAELMN----- 126
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
+ +I ++ + +VA IMYTSG+TG PKGV+ T+GN SAV +
Sbjct: 127 -GPKEEAEIQ-------EEFDLD-EVATIMYTSGTTGKPKGVIQTYGNHWW--SAVGS-A 174
Query: 287 PDLG--SKDVYLAYLPLAHV--LELVAENLIAGVGSAIGYGTPLTLTDT--SSKIKKGTQ 340
+LG D +LA +P+ H+ L ++ ++I YG + L + + KI K Q
Sbjct: 175 LNLGLTEDDCWLAAVPIFHISGLSILMRSVI--------YGMRVVLVEKFDAEKINKLLQ 226
Query: 341 GDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
T+++ V +L R L ++L + Y S
Sbjct: 227 TG----GVTIISVVSTMLQR--------------LLERLGEGTY-------PSS------ 255
Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL--GAPIGQGYGLTETC 458
R +L GG P + C G P+ Q YG+TET
Sbjct: 256 ---------------------FRCMLLGGGPAPKPL---LEQCKEKGIPVYQSYGMTETA 291
Query: 459 AGGTFSEV-----DDS--SVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510
S++ +D+ +G G PL PC +K+ P GEIV+ GP
Sbjct: 292 -----SQIVTLSPEDALTKLGSAGKPLFPCE-LKIEKDGVVV-----PPFEEGEIVVKGP 340
Query: 511 NVTVGYFKNEEKTKEVYK 528
NVT GY E+ T+E ++
Sbjct: 341 NVTKGYLNREDATRETFQ 358
|
Length = 483 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-29
Identities = 91/430 (21%), Positives = 148/430 (34%), Gaps = 84/430 (19%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTYG + A+ L LG K +RVAI+ E +AL R + L
Sbjct: 41 LTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLS 100
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
EA+ + + +I + I + + + +SSV R
Sbjct: 101 AEAVADRIADLGPKVLIADDGTFRNG-----------KEIALLEDADAVLSSVVVVPR-L 148
Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
+ + + + + P+ A D ++YTSG+TG PKG++ +HG L
Sbjct: 149 GLWYDEA--VEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKF 206
Query: 286 VPDLGSKDVYLAYLPLAHV---LELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
DL D + + V L +G + + G P + +
Sbjct: 207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEA------- 259
Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
+ T+ + P L R+ K GL + LS
Sbjct: 260 LEKYKVTIFGTSPTFLRRLM---------KLGLGEP-------YDLS------------- 290
Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
+R + S G PL+ + + LG I YG TET G
Sbjct: 291 ------------------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETG-MGF 331
Query: 463 FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP--RGEIVIAGPN--VTVGYFK 518
+ G G PLP ++ +D EG +P+P GE+V+ P + + Y+
Sbjct: 332 IAGRPPVKNGSSGLPLPGYAVRRVD-DEG------NPVPPGVGELVVRLPWPGMALTYWN 384
Query: 519 NEEKTKEVYK 528
+ E+ KE Y
Sbjct: 385 DPERYKEAYF 394
|
Length = 528 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 82/295 (27%), Positives = 113/295 (38%), Gaps = 90/295 (30%)
Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
D A+I+YTSG+TG PKGVM+TH N+LA + DL DVYL PL H A
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLAN-AVNALAGVDLSPGDVYLLAAPLYH----AA 55
Query: 310 ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA-SVL------RPTVMASVPAILDR-V 361
L A+ G + L + D +VL R T VP + R +
Sbjct: 56 GGLFL--LPALAAGGTVVLMP---------KFDPEAVLDLIERHRVTHTFLVPTMFQRLL 104
Query: 362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR 421
R + D S +R I
Sbjct: 105 RLPDFARYD----------------------------------------LSSLRLI---- 120
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-----SSVGRVGA 476
+ G AP+ A+ +R + G QGYG+TET T +D SVGR
Sbjct: 121 ----IYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGR--- 173
Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYK 528
P+P ++++D +G +P GEIV+ GP V GY+ E T E +
Sbjct: 174 PVPGVEVRIVD-EDGR------ELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR 221
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-26
Identities = 113/493 (22%), Positives = 182/493 (36%), Gaps = 131/493 (26%)
Query: 63 LFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASG 122
+ E + + GD R+++SR + G TY + + A+
Sbjct: 1 ILEHAARYFGD------REIVSRTPD-------------GSIHRYTYADFYRRVRRLANA 41
Query: 123 LAQLGHKKEERVAIFA-DTRAE---WF-VALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
L LG K +RVA A +T +F V G + T+ L E + Y +N
Sbjct: 42 LESLGVKPGDRVATLAWNTHRHLELYFAVPGMG-----AVLHTLNPRLSPEQIAYIINHA 96
Query: 178 EVTTVICGSKELKKLVD-LSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
E VI + L++ ++ +L TVK V+ D S + ++ + +L
Sbjct: 97 EDK-VIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPN------VYAYEE--LL 147
Query: 237 GRENPVDADYPV--SADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSKD 293
E+P + ++P A + YTSG+TG PKGV+ +H VL T+++ + L D
Sbjct: 148 EEESP-EYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPDSLGLSESD 206
Query: 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSK-IKKGTQGDASVL------ 346
L +P+ HV +G P T +K + G D + L
Sbjct: 207 TVLPVVPMFHVN---------------AWGLPYAATMVGAKLVLPGRYLDPASLLDLIEE 251
Query: 347 -RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLL 405
+ TV A VP I
Sbjct: 252 EKVTVSAGVPTI------------------------------------------------ 263
Query: 406 WNLLV--FSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF 463
W L+ L R ++ G A + ++ G + +G+TET GT
Sbjct: 264 WLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEE--RGVEVIHAWGMTETSPLGTV 321
Query: 464 S-----EVDDSSVGRV------GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV 512
S VD ++ G P+P ++++D EG L D GE+V+ GP V
Sbjct: 322 SRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVD-DEGNELPWDGKTV-GELVVRGPWV 379
Query: 513 TVGYFKNEEKTKE 525
T Y+K+ EKT+E
Sbjct: 380 TGSYYKDPEKTEE 392
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-26
Identities = 68/253 (26%), Positives = 99/253 (39%), Gaps = 46/253 (18%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
TL EL ++ + GDK + LTY + +
Sbjct: 6 TLPELLARAARRFGDK------------EAYVFGDQR-----------LTYAELNARVRR 42
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVV---TIYASLGEEALCYSLN 175
A+ LA LG K +RVAI+A W +A G + VV T Y +EA Y L
Sbjct: 43 AAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT--ADEA-AYILA 99
Query: 176 ETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQI 235
+ + L + +L ++HV+ + + K+ +F D
Sbjct: 100 RGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTE-------KMKTFTDFLA 152
Query: 236 LG----RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291
G R VD D DVA I++TSG+TG PKG M+TH +L+ + + L
Sbjct: 153 AGDPAERAPEVDPD-----DVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTE 206
Query: 292 KDVYLAYLPLAHV 304
D YLA P HV
Sbjct: 207 GDRYLAANPFFHV 219
|
Length = 513 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-25
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 10/200 (5%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + A GL +LG K+ + VA+ + E+ GC V S
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ L + L ++ + C EL K+ + + +L V +I +D+ P V +E +
Sbjct: 71 PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSA-PDGVLRIEDLLEPR 129
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
+ + + + + D D A ++Y+SG+TGLPKGVM++H N++A +S V +
Sbjct: 130 LGAEDEFRPTPLIDGKD-------DTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTL 182
Query: 287 PD--LGSKDVYLAYLPLAHV 304
S DV L +LP H
Sbjct: 183 KGNPDSSNDVVLTFLPFYHA 202
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-24
Identities = 119/518 (22%), Positives = 182/518 (35%), Gaps = 151/518 (29%)
Query: 56 GISTLAELFEQSCKEHGDK---YLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQA 112
G +TL +L++ + GD+ G TY +
Sbjct: 30 GDTTLVDLYDNAVARFGDRPALDFFGATT--------------------------TYAEL 63
Query: 113 FETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVT---IYASLGEEA 169
+ + A+GL LG + +RVAI + VA R VV +Y
Sbjct: 64 GKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT---AHE 120
Query: 170 LCYSLNETEVTTVICGSK---ELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ----- 221
L + + I K +++L + L+T+ V N+ +A+ +++
Sbjct: 121 LEHPFEDHGARVAIVWDKVAPTVERLRR-TTPLETIVSV-----NMIAAMPLLQRLALRL 174
Query: 222 ------SGRWKITSFA----------DVQILGRENPVDADYPVSADVAVIMYTSGSTGLP 265
R +T A D I G + V P DVA+I+YTSG+TG P
Sbjct: 175 PIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKP 234
Query: 266 KGVMMTHGNVLATVSAVMTIVPDLGSKD-VYLAYLPLAHVLELVAENLIAGVGSAIG--- 321
KG +TH N+ A + VP LG LA LP+ H L L + +IG
Sbjct: 235 KGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGL---TLCLTLAVSIGGEL 291
Query: 322 -----YGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK-VDAKGGL 375
L L +KK PT + VP + +++ + ++ VD G
Sbjct: 292 VLLPAPDIDLIL----DAMKKHP--------PTWLPGVPPLYEKIAEAAEERGVDLSG-- 337
Query: 376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD 435
+R SG L
Sbjct: 338 ----------------------------------------------VRNAFSGAMALPVS 351
Query: 436 TQRFINICLGAPIGQGYGLTETC---AGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGG 492
T G + +GYGLTET G S DD G VG P P + ++++D PE
Sbjct: 352 TVELWEKLTGGLLVEGYGLTETSPIIVGNPMS--DDRRPGYVGVPFPDTEVRIVD-PE-- 406
Query: 493 YLTSDSPMP---RGEIVIAGPNVTVGYFKNEEKTKEVY 527
D MP GE+++ GP V GY+ E+T + +
Sbjct: 407 --DPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF 442
|
Length = 573 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 115/501 (22%), Positives = 198/501 (39%), Gaps = 110/501 (21%)
Query: 106 WLTYGQAFETICNFASGLAQLGHK-------KEER-------VAIFADTRAEWFVALQGC 151
++TYG F+ + +F+ L K EE+ + ++ W VA C
Sbjct: 91 YITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLAC 150
Query: 152 FRRNVTVVTIYASLGEEALCYSLNETE----------VTTVICGSKE---LKKLVDLSGQ 198
VT + +++ + + LNET+ V ++ E LKKL+
Sbjct: 151 MLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLI----I 206
Query: 199 LDTVKHVICMDANIP-----SAVSS---VEQSGRWKITSFADVQILGRENPVDAD----- 245
LDT+ ++ N S V++ K ++ P++ D
Sbjct: 207 LDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLE 266
Query: 246 -----------------------------YPVSAD----VAVIMYTSGSTGLPKGVMMTH 272
Y + + + I+YTSG++G PKGVM+++
Sbjct: 267 KIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSN 326
Query: 273 GNVLATV------SAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPL 326
N+ TV S P +L+YLP++H+ E V L +G I
Sbjct: 327 KNLYNTVVPLCKHSIFKKYNPK-----THLSYLPISHIYERVIAYLSFMLGGTI------ 375
Query: 327 TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYAR 386
+ SK D + ++A VP + +R+ + +++ L + L +
Sbjct: 376 ---NIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSL 432
Query: 387 RLSAINGSWFGAWGLEKLLWNLL-VFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445
R S NG F K L + + SK++ + + IL+GG LS +++ L
Sbjct: 433 RKSNNNG-GFS-----KFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN 486
Query: 446 APIGQGYGLTETCAGGTF-SEVDDSSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRG 503
QGYGLTET G F DD++ +G P+ P + K+ W Y +D+ P+G
Sbjct: 487 VNYYQGYGLTET-TGPIFVQHADDNNTESIGGPISPNTKYKVRTWET--YKATDTL-PKG 542
Query: 504 EIVIAGPNVTVGYFKNEEKTK 524
E++I ++ GYF +E+TK
Sbjct: 543 ELLIKSDSIFSGYFLEKEQTK 563
|
Length = 746 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 112/460 (24%), Positives = 169/460 (36%), Gaps = 125/460 (27%)
Query: 107 LTYGQAFETICNFASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
++Y + E A L Q G +K +RV ++ ++ +A R N VV +
Sbjct: 36 ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMN 95
Query: 166 GEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVIC------MDANIPSAVSS- 218
EE L + + ++ I GS+ K+ G L ++HVI + A AV +
Sbjct: 96 REEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPAEPEIAVPAW 154
Query: 219 ------VEQSGRWKITSFADVQILGRENPVDADYPVSA---DVAVIMYTSGSTGLPKGVM 269
++ + ++ + G P P +A D+AV+ YTSG+TG+PKG M
Sbjct: 155 LRAEPPLQALAPGGVVAWKEALAAGLAPP-----PHTAGPDDLAVLPYTSGTTGVPKGCM 209
Query: 270 MTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLT 329
TH V+A + + + V LA LPL HV +V + + I G + L
Sbjct: 210 HTHRTVMANAVGSVLWS-NSTPESVVLAVLPLFHVTGMV-----HSMNAPIYAGATVVLM 263
Query: 330 DTSSKIKKGTQGDA-SVLRPTVMASVPAILDRVRDGVRKKVD--AKGGLSKKLFDLAYAR 386
+ + R T ++P ++ VD A GL++ DL
Sbjct: 264 ---PRWDREAAARLIERYRVTHWTNIPTMV----------VDFLASPGLAE--RDL---- 304
Query: 387 RLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPL-SADTQRFINICLG 445
S +R I GG GA + A +R + G
Sbjct: 305 -------------------------SSLRYIGGG--------GAAMPEAVAERLKELT-G 330
Query: 446 APIGQGYGLTET---------------CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPE 490
+GYGLTET C G VD RV ID PE
Sbjct: 331 LDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVD----ARV-----------ID-PE 374
Query: 491 GGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVY 527
+P GEIV+ GP V GY+ E T E +
Sbjct: 375 TL-----EELPPGEVGEIVVHGPQVFKGYWNRPEATAEAF 409
|
Length = 546 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-21
Identities = 59/210 (28%), Positives = 85/210 (40%), Gaps = 21/210 (10%)
Query: 99 LHLGEYEWLTYGQAFETICN-FASGLAQLGHKKEERVAIFADTRAEW-FVALQ-GCFRRN 155
L G+ W TY + + N A+ L LG KK +RVA + L C R
Sbjct: 30 LVFGDRSW-TYAE-LDAAVNRVAAALLDLGLKKGDRVAALG--HNSDAYALLWLACARAG 85
Query: 156 VTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215
V + L E L Y L+ + + L+ + ++ +D I S
Sbjct: 86 AVHVPVNFMLTGEELAYILDHSGARAFLVDP-------ALAPTAEAALALLPVDTLILSL 138
Query: 216 VSS-VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGN 274
V E G W FAD D+A I+YTSG+ LPKG M+TH
Sbjct: 139 VLGGREAPGGW--LDFADWA-EAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRA 195
Query: 275 VLAT-VSAVMTIVPDLGSKDVYLAYLPLAH 303
++A VS + + D+ + D+ L LPL H
Sbjct: 196 LIAEYVSCI--VAGDMSADDIPLHALPLYH 223
|
Length = 523 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 4e-21
Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 15/200 (7%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY E + ASGL LG + ERVAI+ D R E A+ G V I L
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS-VEQSGRW 225
E + + L + V ++ S+ L L ++ +I + ++ E+ W
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPASW 145
Query: 226 KITSFADVQILGRENPVDADYP---VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
+ LG DAD P + +D+A I+YTSGSTG PKGV+++H N++A +V
Sbjct: 146 -----PKLLALG-----DADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSV 195
Query: 283 MTIVPDLGSKDVYLAYLPLA 302
T + + D LA LPL+
Sbjct: 196 ATYL-ENRPDDRLLAVLPLS 214
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-20
Identities = 98/444 (22%), Positives = 137/444 (30%), Gaps = 162/444 (36%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY + E A+ L LG + + VA++ + + A I A L
Sbjct: 17 LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAA-------------ILACL- 62
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+G + +D + P+ R
Sbjct: 63 ----------------------------KAG-----AAYVPLDPSQPAE--------RIA 81
Query: 227 ITSFADVQILGRENP----VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
+IL P D D D+A I++TSGSTG PKGV ++H N+ + +
Sbjct: 82 -------KILEAAGPAALVADPD-----DLAYILFTSGSTGKPKGVQISHANLASFL-DW 128
Query: 283 MTIVPDLGSKDVYLAYLPLA---HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGT 339
M DL DV+ P + V +L A+ G L + I K
Sbjct: 129 MVEDFDLTEGDVFSNQAPFSFDLSVFDLFP---------ALASGATLYV------IPKEQ 173
Query: 340 QGDASVL-------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAIN 392
D L TV SVP+ +N
Sbjct: 174 IADPLALFEFLKEHGLTVWVSVPSFAS------------------------LLLLSRELN 209
Query: 393 GSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-----QRFINICLGAP 447
+ L +L F L G L +RF N A
Sbjct: 210 ---------PESLPSLRTF--------------LFCGEVLPKKLAKALRRRFPN----AR 242
Query: 448 IGQGYGLTETCAGGTFSEVDDSSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR 502
I YG TE T EV + R +G P P ++D E G
Sbjct: 243 IINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALILD--EDGRPVPPG--EE 298
Query: 503 GEIVIAGPNVTVGYFKNEEKTKEV 526
GE+VIAGP V+ GY N EKT +
Sbjct: 299 GELVIAGPQVSPGYLNNPEKTAKA 322
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 3e-20
Identities = 93/435 (21%), Positives = 151/435 (34%), Gaps = 106/435 (24%)
Query: 108 TYGQAFETICN-FASGLAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
TY + + N A L G +RVA+ + AE VA+ + V + +
Sbjct: 1 TYRE-LDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAY 59
Query: 166 GEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
E L + L + ++ S +L L V VI +D P +++++ +
Sbjct: 60 PAERLAFILEDAGARLLLTDSALASRLAGL------VLPVILLD---PLELAALDDAP-- 108
Query: 226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
P D+A ++YTSGSTG PKGV++TH +++ + A +
Sbjct: 109 -------------APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLL-AWLAR 154
Query: 286 VPDLGSKDVYLAYLPLAH---VLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
L D L + L+ V E+ L+AG T + + +
Sbjct: 155 RYGLDPDDRVLQFASLSFDASVEEIFG-ALLAG-------ATLVVPPEDEERDDAALLAA 206
Query: 343 ASVLRP-TVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
P TV+ P++L L A L+
Sbjct: 207 LIAEHPVTVLNLTPSLLA-------------------LLAAALPPALA------------ 235
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAG 460
+R ++ GG L+ R+ GA + YG TET
Sbjct: 236 -------------------SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVW 276
Query: 461 GTFSEVDDSSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNV 512
T + VD R +G PL + + ++D + P+P GE+ I GP V
Sbjct: 277 STATLVDPDDAPRESPVPIGRPLANTRLYVLD-DDLR------PVPVGVVGELYIGGPGV 329
Query: 513 TVGYFKNEEKTKEVY 527
GY E T E +
Sbjct: 330 ARGYLNRPELTAERF 344
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-19
Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 43/257 (16%)
Query: 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADN-GRSFEKLHLGEYEWLTYGQA 112
+ G ++LA+ ++Q+ + DK V DN G S+ TY
Sbjct: 19 YWGDASLADYWQQTARAMPDK------------IAVVDNHGASY-----------TYSAL 55
Query: 113 FETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCY 172
A+ L G + +RVA E+ + C + V + S E L +
Sbjct: 56 DHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVW 115
Query: 173 SLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
LN+ + + + ++ L QL ++ ++ +D P A SS+ S
Sbjct: 116 VLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAP-ATSSLSLS----- 169
Query: 228 TSFADVQILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
QI+ P+ D +A +++TSG+ GLPKGVM+TH N+LA+ A
Sbjct: 170 ------QIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERA-YCAR 222
Query: 287 PDLGSKDVYLAYLPLAH 303
+L +DV++ PL H
Sbjct: 223 LNLTWQDVFMMPAPLGH 239
|
Length = 547 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-19
Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 57/286 (19%)
Query: 243 DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA 302
D+ + D A+I+YTSG+TG PKGV++THGN+ A A++ + DV L LPL
Sbjct: 81 DSQPSLLVDPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAW-RWTASDVLLHALPLH 139
Query: 303 HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362
HV L A + L + + + R TV VP I R+
Sbjct: 140 HVHGLF----NALHCPLWAGASVEFLPRFDPQER---DALRLLPRITVFMGVPTIYTRL- 191
Query: 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRI 422
L + A A +
Sbjct: 192 -------------------LEHYEFDDA------------------------AAAAARNL 208
Query: 423 RFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS 481
R +SG A L +R+ G + + YG+TET + + G VG PLP
Sbjct: 209 RLFVSGSAALPVPVLERWEER-TGHTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGV 267
Query: 482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
++++D +GG + + GEI + GPNV Y+ E T E +
Sbjct: 268 EVRIVD-EDGGEPLAAGEV--GEIQVRGPNVFSEYWNKPEATAEAF 310
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 4e-19
Identities = 84/419 (20%), Positives = 129/419 (30%), Gaps = 113/419 (26%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
T+ + A L G + RVA+ E + L C +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAM------- 53
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
L L E E T + L D ++ A S
Sbjct: 54 --LNTRLTENERTNQLEDLDVQLLLTDS-----------LLEEKDFQADSLDR------- 93
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
A E + A + + +A +M+TSG+TG PK V T N A+ +
Sbjct: 94 IEAAGR----YETSLSASFNMD-QIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLG 148
Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVG---SAIGYGTPLTLTDTSSKIKKGTQGDAS 344
D +L LPL H I+G+ + G L + D +++ + +
Sbjct: 149 -FTEDDNWLLSLPLYH---------ISGLSILFRWLIEGATLRIVDKFNQLLEMIANE-- 196
Query: 345 VLRPTVMAS-VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403
S VP L+R+ L++
Sbjct: 197 ---RVTHISLVPTQLNRL---------------------------------------LDE 214
Query: 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF 463
N +R IL GG+ + A G PI YG+TETC+ T
Sbjct: 215 GGHNE------------NLRKILLGGSAIPAPLIE-EAQQYGLPIYLSYGMTETCSQVTT 261
Query: 464 SEVDDS-SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
+ + + VG PL IK + D+ GEI++ G N+ GY E
Sbjct: 262 ATPEMLHARPDVGRPLAGREIK---------IKVDNKEGHGEIMVKGANLMKGYLYQGE 311
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 7e-19
Identities = 70/287 (24%), Positives = 107/287 (37%), Gaps = 81/287 (28%)
Query: 246 YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHV- 304
P A I++TSGSTG PK V+ T GN LA+ + L D +L LPL HV
Sbjct: 73 QPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG-LTPDDNWLLSLPLFHVS 131
Query: 305 -LELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363
L +V +L+ G L L D + + + T ++ VP L R+
Sbjct: 132 GLAIVMRSLL--------AGGALVLPD-KFDAEAIAEALEN-HGVTHISLVPTQLQRL-- 179
Query: 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIR 423
L ++ W L L R
Sbjct: 180 ------------------------LESLGARW-----LSSL------------------R 192
Query: 424 FILSGGAPLSADTQRFINIC--LGAPIGQGYGLTETCAGGTFSEVDDS--SVGRVGAPLP 479
+L GGAP+ + G P+ YG+TET + + DD +G VG PLP
Sbjct: 193 AVLLGGAPIPPSL---LEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLP 249
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
+++++ +G EI++ GP++ +GY T +
Sbjct: 250 GRELRIVNPQDG------------EILVRGPSLFLGYLPQGGLTPPL 284
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-18
Identities = 98/432 (22%), Positives = 145/432 (33%), Gaps = 131/432 (30%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTYG+ + A+ LA+LG + + VA E+ V C R + I
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L + L + + + D
Sbjct: 62 ERELGFILRQARA-----------------------RVLFVPD----------------- 81
Query: 227 ITSFADVQILGRENPVDADYP-VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
F DY + DVA+++YTSG+TG PKGVM TH +LA V + +
Sbjct: 82 --EFRGF-----------DYAAMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVER 128
Query: 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV 345
+ L DV L PLAH+ G G PL L G V
Sbjct: 129 L-GLTPDDVVLMPSPLAHI-----------TGFLYGLELPLLL------------GATVV 164
Query: 346 L----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
L P L+ +R V G + L DL A +
Sbjct: 165 LQDRWDPA------RALELIR---EHGVTFTMGATPFLADLLAAADAAG----------- 204
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETCA- 459
L +R L GGAP+ + +R LGA + + YG+TE
Sbjct: 205 -PDL--------------PSLRVFLCGGAPVPRELARRAAEA-LGAKVVRAYGMTEVPLV 248
Query: 460 -GGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVG 515
GT + DD G P+P ++++D + +P GE+ + GP + +G
Sbjct: 249 TVGTPDDPDDKRAATDGRPVPGVEVRIVD-------DDGNDVPPGEEGELQVRGPQLFLG 301
Query: 516 YFKNEEKTKEVY 527
Y + T+
Sbjct: 302 YLDPPDNTEAFT 313
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 1e-18
Identities = 118/492 (23%), Positives = 164/492 (33%), Gaps = 165/492 (33%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIY---- 162
LTY + A+ L LG +RV + A ++ A GC V
Sbjct: 24 LTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRR 82
Query: 163 ASLGEEALCYSLNETEVTTVICGSKELKKL-VDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
L L + V+ S L L L+ + +I D +
Sbjct: 83 LGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADD------LAALA 136
Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+ W R P D D D+A + YTSGSTG PKGVM+THGN+LA + A
Sbjct: 137 AADW------------RPPPPDPD-----DIAFLQYTSGSTGAPKGVMVTHGNLLANLRA 179
Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
+ L DV +++LPL H + LI G+ + G P+ L + ++
Sbjct: 180 IARAF-GLDPDDVGVSWLPLYHDM-----GLIGGLLQPLYAGFPVVLMSPLAFLR----- 228
Query: 342 DASVLRP------------TVMASVP-----AILDRVRDGVRKKVDAKGGLSKKLFDLAY 384
RP TV + P + RVRD + GL DL
Sbjct: 229 -----RPLRWLEAISRYRATVSGA-PNFAYDLCVRRVRD------EQLAGL-----DL-- 269
Query: 385 ARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-----QRF 439
S R +G P+ ADT +RF
Sbjct: 270 ---------------------------SSWRVAF--------NGAEPVRADTLERFAERF 294
Query: 440 INICLGAPIG-------QGYGLTETC---------AGGTFSEVDDSSVGRVGA------- 476
AP G YGL E AG VD ++ R GA
Sbjct: 295 ------APAGFRPEAFLPCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADG 348
Query: 477 -----------PLPCSFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEK 522
PLP ++++D PE P+P GE I + GP+V GY+ E
Sbjct: 349 AAARELVSCGRPLPGHEVRIVD-PETR-----RPLPDGEVGEIWVRGPSVAAGYWNRPEA 402
Query: 523 TKEVYKVMLDRF 534
T E + L
Sbjct: 403 TAETFGARLATD 414
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-18
Identities = 109/445 (24%), Positives = 161/445 (36%), Gaps = 93/445 (20%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
GE+ +TY +A + A L LG E + I + E + V V +
Sbjct: 21 GEWRRVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPV 80
Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQL--------DTVKHVICMDANIP 213
+ YSL SK+ KL + L D + A
Sbjct: 81 SPA-------YSL----------LSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGL 123
Query: 214 SAVS--SVEQSGRWKITSFADVQILGRENPVDADYP-VSAD-VAVIMYTSGSTGLPKGVM 269
+ V +V + +FA + VDA + V D VA ++TSGSTGLPK V+
Sbjct: 124 AGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVI 183
Query: 270 MTHGNVLATVSAVMTIVPDLGSKD-VYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
TH + A + + P L + V + +LP H N + G L +
Sbjct: 184 NTHRMLCANQAMIAQCWPFLTEEPPVLVDWLPWNHTF---GGNHN--FNMVLYNGGTLYI 238
Query: 329 TDTSSKIKKGTQGDASVLR------PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDL 382
D K LR PTV +VP + + D + + DA L ++ F
Sbjct: 239 DDG----KPVPGLFEETLRNLREVSPTVYFNVPKGFEMLVDALER--DA--ALRRRFF-- 288
Query: 383 AYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442
+RL + + L + +W+ L VR G RI
Sbjct: 289 ---KRLRLLF---YAGAALPQDVWDRLQALAVRT-TGERIPMT----------------- 324
Query: 443 CLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR 502
G G TET TF G +G P P + +KL+ P GG L
Sbjct: 325 -------SGLGATETAPTATFVHWPTDRSGVIGLPAPGTELKLV--PNGGKL-------- 367
Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVY 527
E+ + GPNVT GY+++ E T E +
Sbjct: 368 -EVRVKGPNVTPGYWRDPELTAEAF 391
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-18
Identities = 101/484 (20%), Positives = 154/484 (31%), Gaps = 145/484 (29%)
Query: 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113
W TL +L + H D+ T V D R LTY +
Sbjct: 12 WGDQ-TLGDLLAANAARHPDR------------TAVVDGPRR-----------LTYRELD 47
Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
+ A+GL LG +RV + AE+ + F+ V +
Sbjct: 48 AAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRA------ 101
Query: 174 LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADV 233
E+ + Q + ++I R+ F D
Sbjct: 102 ---HEIG-------------HFARQSEAKAYIIA---------------DRFS--GF-DY 127
Query: 234 QILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293
L RE + + P DVA+ + G+TGLPK + TH + L + A L
Sbjct: 128 AALARE--LLEELP---DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEAC-GLDPGT 181
Query: 294 VYLAYLPLAHVLELVAENLI--AGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVM 351
VYLA LP AH L + L+ G + P + I++ + T
Sbjct: 182 VYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIERE--------KVTHT 233
Query: 352 ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVF 411
A VPA+L+ W LE W+
Sbjct: 234 ALVPALLN--------------------------------------LW-LEAAEWDQADL 254
Query: 412 SKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE-TCAGGTFSEVDDSS 470
S +R I GGAPLS + R + LG P+ Q +G+ E + D
Sbjct: 255 SSLRV--------IQVGGAPLSPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVI 306
Query: 471 VGRVGAPLPCSF--IKLID-----WPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
+ G P+ I+++D P G GE++ GP GY++ E
Sbjct: 307 MRTQGRPI-SPADEIRIVDDQGEPVPPGEV---------GELLTRGPYTIRGYYRAPEHN 356
Query: 524 KEVY 527
+
Sbjct: 357 ARAF 360
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 3e-18
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 422 IRFILSGGAPLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDDS---SVGRVGAP 477
+R +SGGAP+ + R I A I GYG+TET GT + DD G VG P
Sbjct: 119 LRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRP 178
Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
LP +K++D P+GG + GEI + G +V GY+ + E T E
Sbjct: 179 LPGVEVKIVD-PDGGEVPPGEV---GEICVRGYSVMKGYYNDPEATAEA 223
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 5e-17
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 422 IRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
+R I SG APLS + Q I QGYG+TET T + D G VG +P
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPN 324
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
K++D +GG S P RGE+ + GP + GY N E TKE
Sbjct: 325 VEAKIVD-EDGG--KSLGPNERGELCVKGPQIMKGYLNNPEATKE 366
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 8e-17
Identities = 84/428 (19%), Positives = 127/428 (29%), Gaps = 89/428 (20%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
+ LTY + A L LG E VAI AD E VAL + V +
Sbjct: 248 RGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPL 307
Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
E L Y L ++ T ++ + L+ L + + P + +
Sbjct: 308 DPLYPAERLAYILEDSRPTLLLTQA-HLRVDDVGLPGLALDDALSEIPDTDPIPQALLGD 366
Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+A I+YTSGSTG PKGV + H + ++
Sbjct: 367 -----------------------------ALAYIIYTSGSTGQPKGVRIEHRALANLLND 397
Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
L + D LA L+
Sbjct: 398 AGARFG-LDADDRVLALASLSF-------------------------------------- 418
Query: 342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
DASV A L ++ L +L A+ ++ +
Sbjct: 419 DASVFEIFGALLEGARLVLAPALLQV-------DPAALLELLEAQGITVLL--LVPLLLR 469
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT--QRFINICLGAPIGQGYGLTETCA 459
LL L R+R +LSGG L + L + YG TE
Sbjct: 470 LLLLAALAPD---LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATL 526
Query: 460 GGTFSEVDDSSVGRV--GAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517
+ RV G P+ + + ++D L GE+ IAG + +GY
Sbjct: 527 DAPSFPISAELESRVPIGRPVANTQLYILD----QGLRPLPLGVPGELYIAGLGLALGYL 582
Query: 518 KNEEKTKE 525
+ T E
Sbjct: 583 NRPDLTAE 590
|
Length = 642 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 1e-16
Identities = 98/441 (22%), Positives = 157/441 (35%), Gaps = 108/441 (24%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTYG+ E + + + L +LG ++E RV + E+ A G + V I L
Sbjct: 31 LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ Y LN++ ++ + + L + ++HVI V +G
Sbjct: 91 PDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVI-----------VVGGAGPGA 139
Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSA---- 281
S+A Q++ SA D+A +Y+SGSTG PKGV+ H ++L T A
Sbjct: 140 -LSYA--QLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKN 196
Query: 282 VMTIVPD---LGSKDVYLAY-------LPLAHVLELVAENLIAGVG-SAIGYGTPLTLTD 330
V+ I D + ++ AY PL VG + + T
Sbjct: 197 VLGITEDDVVFSAAKLFFAYGLGNGLYFPL-------------SVGATTVLMPERPTPDA 243
Query: 331 TSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSA 390
+ I++ +PTV VP + YA L+A
Sbjct: 244 VFATIERY--------KPTVFFGVPTL--------------------------YAAMLAA 269
Query: 391 INGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIG 449
S +R +S G L A+ R+ + G I
Sbjct: 270 PE-------------KPERDLSSLRL--------CVSAGEALPAEIGYRWKEL-FGLEIL 307
Query: 450 QGYGLTETCAGGTF--SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI 507
G G TE F + G G P+P +KL+D +G + GE+ +
Sbjct: 308 DGIGSTE--MLHIFLSNRPGAVKYGTSGKPVPGYEVKLVD-EDGEEVADGEI---GELWV 361
Query: 508 AGPNVTVGYFKNEEKTKEVYK 528
G + GY+ EKT+E +
Sbjct: 362 RGDSSAAGYWNRREKTRETFV 382
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 110/447 (24%), Positives = 164/447 (36%), Gaps = 96/447 (21%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G + LTY +A E + A L G E + I + E + V +
Sbjct: 65 GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPV 124
Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQL--------DTVKHVICMDANIP 213
+ YSL S++ KL + L D + A +P
Sbjct: 125 SPA-------YSLV----------SQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP 167
Query: 214 SA---VSSVEQSGRWKITSFADVQILGRENPVDADYP-VSAD-VAVIMYTSGSTGLPKGV 268
+ V+ T FA + VDA + V D +A ++TSGSTGLPK V
Sbjct: 168 ADVEVVAVRGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAV 227
Query: 269 MMTHGNVLATVSAVMTIVPDLGS-KDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLT 327
+ TH + A + P L V + +LP H N +G + G L
Sbjct: 228 INTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTF---GGNHN--LGIVLYNGGTLY 282
Query: 328 LTDTSSKIKKGTQG--DASV--LR---PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLF 380
+ D K T G D ++ LR PTV +VP + + + + DA L ++ F
Sbjct: 283 IDD-----GKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALER--DA--ALRRRFF 333
Query: 381 DLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440
RL + ++ L + +W+ L G RIR +
Sbjct: 334 -----SRLKLL---FYAGAALSQDVWDRLDRVAEATC-GERIRMM--------------- 369
Query: 441 NICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM 500
G G+TET TF+ S G +G P P +KL+ P GG L
Sbjct: 370 ---------TGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLV--PVGGKL------ 412
Query: 501 PRGEIVIAGPNVTVGYFKNEEKTKEVY 527
E+ + GPNVT GY++ E T E +
Sbjct: 413 ---EVRVKGPNVTPGYWRAPELTAEAF 436
|
Length = 614 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 1e-16
Identities = 76/310 (24%), Positives = 110/310 (35%), Gaps = 93/310 (30%)
Query: 241 PVDADYPV------------------SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
P+D YP D+A ++YTSGSTG PKGV ++H ++ + +
Sbjct: 66 PLDPSYPAERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLS- 124
Query: 283 MTIVPDLGSKDVYLAYLPLA---HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGT 339
M P LG+ D LA ++ VLEL+ PL
Sbjct: 125 MARRPGLGASDRLLAVTTISFDISVLELL---------------LPLLS----------- 158
Query: 340 QGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
A+V V+AS + VRD R AR ++ + A
Sbjct: 159 --GATV----VIASA----ETVRDPER-----------------LARLIADERITIMQA- 190
Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459
W +L+ + R L GG L D + GA + YG TET
Sbjct: 191 --TPATWRMLLAAGWRGRESLTA---LCGGEALPRDLAERLLST-GAELWNMYGPTETTI 244
Query: 460 GGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVG 515
T + V +G P+ + + ++D L P+P GE+ I G V G
Sbjct: 245 WSTCARVTAADGPVTIGRPIANTQVYVLD----EDLQ---PVPPGVPGELYIGGDGVARG 297
Query: 516 YFKNEEKTKE 525
Y E T E
Sbjct: 298 YLGRPELTAE 307
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-16
Identities = 97/427 (22%), Positives = 161/427 (37%), Gaps = 82/427 (19%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
L+YG+ + + L +LG K+EERV + ++ +A G R + V + L
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ Y L ++ V + L + G+ ++H + V ++G +
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRV---------VVGRPEAGEVQ 141
Query: 227 ITSF-ADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
+ A + AD D A +Y+SGSTG+PKGV+ TH N T
Sbjct: 142 LAELLATESEQFKPAATQAD-----DPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARN 196
Query: 286 VPDLGSKDVYL--AYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
+ DV A L A+ G+G+A+ + P+++ G
Sbjct: 197 TLGIREDDVVFSAAKLFFAY-----------GLGNALTF--PMSV------------GAT 231
Query: 344 SVL---RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
+VL RPT P +FD RL + F +G
Sbjct: 232 TVLMGERPT-----PD---------------------AVFD-----RLRRHQPTIF--YG 258
Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460
+ L +L + A R+R S G L A+ + G I G G TE
Sbjct: 259 VPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHI 318
Query: 461 GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520
+ D G G P+P ++L+ +GG + GE++I+GP+ Y+ N
Sbjct: 319 FLSNLPGDVRYGTSGKPVPGYRLRLVG--DGGQDVAAGEP--GELLISGPSSATMYWNNR 374
Query: 521 EKTKEVY 527
KT++ +
Sbjct: 375 AKTRDTF 381
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-16
Identities = 79/314 (25%), Positives = 121/314 (38%), Gaps = 94/314 (29%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
D+A I ++SGSTG PKGV++TH N+L + A + ++ S+DV+L+++PL H + L+
Sbjct: 107 DIAFIQFSSGSTGEPKGVILTHKNLLTNIEA-IIEAAEITSEDVFLSWMPLTHDMGLIGF 165
Query: 311 NLIAGVGSAIGYGTPLTLTDTSSKIKKGTQ--GDASVLRPTVMASVPAILDRVRDGVRKK 368
+L G L T I++ AS R T+++S P
Sbjct: 166 HLT-----PTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSS-P------------- 206
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
+ Y L W L S VR I +G
Sbjct: 207 ------------NFGYKYLLKHFKTEKIIDWDL----------SSVR--------LIFNG 236
Query: 429 GAPLSADT-QRFINICLGAPIG-------QGYGLTETCAGGTFSEVDDS----SVGR--- 473
P+SAD + F+ AP G YGL E +F + + + R
Sbjct: 237 AEPISADLCEEFLEKM--APFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHL 294
Query: 474 ---------------------VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV 512
VG+P+ I+++D + G + D + G I I G NV
Sbjct: 295 KVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVD--DAGEVLPDRTI--GHIQIKGDNV 350
Query: 513 TVGYFKNEEKTKEV 526
T GY+ N E TK+
Sbjct: 351 TSGYYNNPEATKKS 364
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 4e-16
Identities = 67/270 (24%), Positives = 100/270 (37%), Gaps = 56/270 (20%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATV-SAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
D+A +T G+TG PK +H N +A A + LG DV L LPL HV +
Sbjct: 3 DLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLS--GLGPGDVLLNGLPLFHVGGAIV 60
Query: 310 ENLIA-GVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
L G+ + TP + + + R T++++VP +L +
Sbjct: 61 TGLAPLARGATVVLPTPSGFRNPA--VVANFWKIVERYRVTLLSAVPTVLAALLQ--VPL 116
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
DA D+ S +R + L+G
Sbjct: 117 GDA---------DI-----------------------------SSLR--------YALTG 130
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLID 487
APL + R G P+ +GYG+TE + G VG LP + +++
Sbjct: 131 AAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAK 190
Query: 488 WPEGGYLTSD-SPMPRGEIVIAGPNVTVGY 516
GG L D +P G + I GPNV GY
Sbjct: 191 LDAGGALGRDCAPGEVGVLAIRGPNVFPGY 220
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 6e-16
Identities = 65/270 (24%), Positives = 107/270 (39%), Gaps = 40/270 (14%)
Query: 49 LVSTSWE----GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADN-GRSFEKLHLGE 103
L SW+ + LAE + + K + VAD+ G
Sbjct: 602 LSFDSWKSRKEALPPLAEAWIDTAKRNW------------SRLAVADSTGGE-------- 641
Query: 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYA 163
L+YG+A A L + K EE V I +A V +
Sbjct: 642 ---LSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLAGKVPVNLNY 697
Query: 164 SLGEEALCYSLNETEVTTVICGSKELKKLVD--LSGQLDTVKHVICMDANIPSAVSSVEQ 221
+ E AL ++ + ++ TVI K L+KL + +L VI ++ ++ + +S V++
Sbjct: 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLE-DLKAKISKVDK 756
Query: 222 SGRWKITSFADVQILGREN--PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279
++L R D D A I+++SGS G PKGVM++H N+L+ +
Sbjct: 757 LTALLAARLLPARLLKRLYGPTFKPD-----DTATIIFSSGSEGEPKGVMLSHHNILSNI 811
Query: 280 SAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
+ + L + DV L+ LP H L
Sbjct: 812 EQISDVFN-LRNDDVILSSLPFFHSFGLTV 840
|
Length = 1146 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 6e-16
Identities = 60/245 (24%), Positives = 95/245 (38%), Gaps = 46/245 (18%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
T+ Q + + A GL LG + +RV I+A AEW + R +V I +
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 167 EEALCYSLNETEVTTVIC-----GSKELKKLVDL-------------SGQLDTVKHVICM 208
L Y+L ++ V VIC S L +L +L ++ V+ +
Sbjct: 106 ASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSL 165
Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILG----------RENPVDADYPVSADVAVIMYT 258
P ++ ++Q G R+ +D D P++ I YT
Sbjct: 166 APAPPPG-----------FLAWHELQARGETVSREALAERQASLDRDDPIN-----IQYT 209
Query: 259 SGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIA-GVG 317
SG+TG PKG ++H N+L + L D +PL H +V NL VG
Sbjct: 210 SGTTGFPKGATLSHHNILNN-GYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVG 268
Query: 318 SAIGY 322
+ + Y
Sbjct: 269 ACLVY 273
|
Length = 558 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 2e-15
Identities = 74/320 (23%), Positives = 108/320 (33%), Gaps = 106/320 (33%)
Query: 241 PVDADYPV------------------SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
P+D YP D+A ++YTSGSTG PKGVM+ H ++ ++ +
Sbjct: 66 PLDPAYPAERLAYMLEDSGAKLLLTDPDDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWL 125
Query: 283 MTIVPDLGSKDVYLAYLPL---AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGT 339
L + D L + A V E+ L++G T L L
Sbjct: 126 QERYG-LTAGDRVLQFASFSFDASVWEIFPP-LLSG-------AT-LVLAP------PEV 169
Query: 340 QGDASVL-------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAIN 392
D L R TV+ VP++L + D + L R +
Sbjct: 170 LRDPEALAELLREHRITVLHLVPSLLRALLDALEPA------------ALPSLRLV---- 213
Query: 393 GSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGY 452
G E L L + R + G R +N Y
Sbjct: 214 --IVGG---EALPAEL--VRRWRELFPGA----------------RLVN---------AY 241
Query: 453 GLTETCAGGTFSEVDDSSVGR----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEI 505
G TET T+ EVD + +G P+ + + ++D E P+P GE+
Sbjct: 242 GPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLD--EDL-----RPVPVGVPGEL 294
Query: 506 VIAGPNVTVGYFKNEEKTKE 525
I G V GY E T E
Sbjct: 295 YIGGAGVARGYLNRPELTAE 314
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-15
Identities = 67/230 (29%), Positives = 96/230 (41%), Gaps = 40/230 (17%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
GE +TY + +C FA+ L LG KK +RVAI+ E +A+ C R +
Sbjct: 84 GEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVV 143
Query: 162 YASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVD--LSGQLDTVKHVICMD-A 210
+ EAL +N+ VI G K LK +VD L +V+HV+ +
Sbjct: 144 FGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRT 203
Query: 211 NIPSAVSSVEQSGRWKITSFADV---QILGRENPVDADYPVSA-DVAVIMYTSGSTGLPK 266
P GR DV ++ + + P+ + D I+YTSGSTG PK
Sbjct: 204 GNPVPW----VEGR-------DVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPK 252
Query: 267 GVMMTHGNVLATVSAVMTIVPDLGSKDV--------------YLAYLPLA 302
GV+ T G L + M V D+ D+ Y+ Y PLA
Sbjct: 253 GVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLA 302
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 6e-15
Identities = 48/226 (21%), Positives = 75/226 (33%), Gaps = 21/226 (9%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
++Y + +A A G K + VA+ + R E+ A G + V +
Sbjct: 63 ISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQR 122
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVIC----MDANIPSAVSSVEQS 222
L +SLN + +I G EL + + + + + P + +
Sbjct: 123 GAVLAHSLNLVDAKHLIVGE-ELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAA 181
Query: 223 GRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
NP + D A +YTSG+TGLPK +M+H L
Sbjct: 182 ----AAGAPT------TNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKA-MGG 230
Query: 283 MTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
+ L DV LPL H S + G L L
Sbjct: 231 FGGLLRLTPDDVLYCCLPLYH-----NTGGTVAWSSVLAAGATLAL 271
|
Length = 600 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 111/504 (22%), Positives = 159/504 (31%), Gaps = 132/504 (26%)
Query: 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFE 114
++ L + E D+ L R + K+ TYG+A
Sbjct: 46 PYPRSIPHLLAKWAAEAPDRPWLAQR---------EPGHGQWRKV--------TYGEAKR 88
Query: 115 TICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSL 174
+ A L LG V I + E + + V + + YSL
Sbjct: 89 AVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPA-------YSL 141
Query: 175 NETEVTTVICGSKELKKLVDL---------SGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
+LK L DL SG + + +D + V
Sbjct: 142 MSH-------DHAKLKHLFDLVKPRVVFAQSGAPFA-RALAALDLLDVTVVHVTGPGEGI 193
Query: 226 KITSFADVQILGRENPVDADYPVSAD------VAVIMYTSGSTGLPKGVMMTHGNVLATV 279
+FAD+ P A + VA ++TSGSTG+PK V+ T + A +
Sbjct: 194 ASIAFADLAA----TPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANI 249
Query: 280 SAVMTIVPDLGSKD--VYLAYLPLAHVL---ELVAENLIAGVGSAIGYGTPL-------- 326
+ + P V L ++P H + L G I G PL
Sbjct: 250 AMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETI 309
Query: 327 -TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYA 385
L + S PTV +VPA + + + K + K L +AY
Sbjct: 310 RNLREIS---------------PTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYG 354
Query: 386 RRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445
GA L L+ + VR G RI
Sbjct: 355 -----------GA-TLSDDLYERMQALAVRTT-GHRI----------------------- 378
Query: 446 APIGQGYGLTETCAGGTFSEV--DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRG 503
P GYG TET T + D VG +G PLP +KL P G
Sbjct: 379 -PFYTGYGATET--APTTTGTHWDTERVGLIGLPLPGVELKLA--PVGDKY--------- 424
Query: 504 EIVIAGPNVTVGYFKNEEKTKEVY 527
E+ + GPNVT GY K+ E T +
Sbjct: 425 EVRVKGPNVTPGYHKDPELTAAAF 448
|
Length = 624 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 66/234 (28%), Positives = 98/234 (41%), Gaps = 35/234 (14%)
Query: 96 FEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRN 155
+E E +TY + + +C FA+ L LG KK +RVAI+ E +A+ C R
Sbjct: 68 WEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIG 127
Query: 156 VTVVTIYASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVDLS-GQLDTVKHVI 206
++A EAL +N+ + +I G K LK++VD + + +V+ VI
Sbjct: 128 AIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVI 187
Query: 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPV---SADVAVIMYTSGSTG 263
+ V VE W + D+ P + D I+YTSGSTG
Sbjct: 188 VVK-RTGGEVPMVEGRDVW----WHDLM----AKASPYCEPEPMDAEDPLFILYTSGSTG 238
Query: 264 LPKGVMMTHGNVLATVSAVMTIVPDLGSKDV--------------YLAYLPLAH 303
PKGV+ T G L + V D+ DV Y+ Y PLA+
Sbjct: 239 KPKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIVYGPLAN 292
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 3e-14
Identities = 96/419 (22%), Positives = 152/419 (36%), Gaps = 85/419 (20%)
Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
+ A L + G +RVA+ + AE+ VAL R ++ VV + +L
Sbjct: 55 DLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAA 114
Query: 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
V L+D G D + P V+ SG T +
Sbjct: 115 GARVV---------LIDADGPHDRAEPTT---RWWPLTVNVGGDSGPSGGTLSVHLDAAT 162
Query: 238 RENPV-DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
P + D A+IM+T G+TGLPK V TH N+ ++V A++T L +D +
Sbjct: 163 EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATV 221
Query: 297 AYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPA 356
A +PL H LIA + + + G +VL P
Sbjct: 222 AVMPLYH-----GHGLIAALLATLASG-------------------GAVLLP-------- 249
Query: 357 ILDRVRDGVRKKVDAKGGLSKKLF--DLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414
A+G S F D+ A+ +W+ A + + LL +
Sbjct: 250 --------------ARGRFSAHTFWDDIK------AVGATWYTA--VPTIHQILLERAAT 287
Query: 415 RAILGGR--IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDS--- 469
+RFI S APL+A+T + + AP+ +G+TE T ++++
Sbjct: 288 EPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT 347
Query: 470 -----SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
S G VG I +G L + + GE+ + G V GY + T
Sbjct: 348 ENPVVSTGLVGRSTGAQI--RIVGSDGLPLPAGAV---GEVWLRGTTVVRGYLGDPTIT 401
|
Length = 534 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 6e-14
Identities = 102/446 (22%), Positives = 171/446 (38%), Gaps = 90/446 (20%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+T+ + + FA+ L +LG +K +RVAI + + G VV
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICM------------------ 208
E L Y L+++ ++C ++ ++ ++HVI
Sbjct: 110 ERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPFPKNLLYPFVQ 168
Query: 209 --DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPK 266
+N+ VS E W S G E P D + D+A++ YT G+TG PK
Sbjct: 169 KKQSNLVVKVSESETIHLW--NSVEKEVNTGVEVPCDPE----NDLALLQYTGGTTGFPK 222
Query: 267 GVMMTHGNVLA-TVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTP 325
GVM+TH N+++ T+ V + ++V L LP HV YG
Sbjct: 223 GVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHV-----------------YGMT 265
Query: 326 LTLTDTSSKIKKGTQGDASVLRPTVMASVPAI-LDRVRDGVRK-KVDAKGGLSKKLFDLA 383
+ + S+++ M +P + V + ++K KV LF A
Sbjct: 266 AVM-------------NLSIMQGYKMVLIPKFDMKMVFEAIKKHKV--------TLFPGA 304
Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443
++ +N + + S +RA + G APL + Q
Sbjct: 305 PTIYIALLNSPLLKEYDI----------SSIRACISG--------SAPLPVEVQEKFETV 346
Query: 444 LGAPIGQGYGLTETCAGGTFSEVDDSSV-GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR 502
G + +GYGLTE+ + + + V G +G P P + ++ G L P
Sbjct: 347 TGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEAL---PPGEI 403
Query: 503 GEIVIAGPNVTVGYFKNEEKTKEVYK 528
GEIV+ GP + GY+ E+T V +
Sbjct: 404 GEIVVKGPQIMKGYWNKPEETAAVLQ 429
|
Length = 563 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 1e-13
Identities = 53/196 (27%), Positives = 76/196 (38%), Gaps = 40/196 (20%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQ-GCFRRNVTVVTIYASL 165
TY + E + A GL LG +K +RV I+A EW V Q + +VTI +
Sbjct: 44 WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEW-VLTQFATAKIGAILVTINPAY 102
Query: 166 GEEALCYSLNETEVTTVICGSK---------------ELKKLVDLSGQLDT-----VKHV 205
L Y+LN++ +I EL GQL + ++ V
Sbjct: 103 RLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCE--PGQLQSARLPELRRV 160
Query: 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSA-----DVAVIMYTSG 260
I + + G +F ++ LGR A D I YTSG
Sbjct: 161 IFLGDE--------KHPGML---NFDELLALGRAVDDAELAARQATLDPDDPINIQYTSG 209
Query: 261 STGLPKGVMMTHGNVL 276
+TG PKG +TH N+L
Sbjct: 210 TTGFPKGATLTHRNIL 225
|
Length = 559 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 68/291 (23%), Positives = 106/291 (36%), Gaps = 81/291 (27%)
Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA----VMTIVPD---LGSKDVYLAYLPLA 302
D+A +YTSG+TG PKGVM H + L A ++ + P S ++ AY L
Sbjct: 91 DDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKLFFAY-GLG 149
Query: 303 HVLELVAENLIAGVGSAI---GYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359
+ L L +G SA+ G+ TP + D ++ RPTV+ VPA+
Sbjct: 150 NSL---LFPLFSG-ASAVLLPGWPTPEAVLDLLAR-----------HRPTVLFGVPALYR 194
Query: 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILG 419
+ + G S LF
Sbjct: 195 ALLES--------GAGSAPLF--------------------------------------- 207
Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF--SEVDDSSVGRVGAP 477
+R +S G L A G I G G TE F + + G G P
Sbjct: 208 RSVRLCVSAGEALPAGLAERWAEATGIEILDGIGSTE--VLHIFISNRPGAARPGTTGRP 265
Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK 528
+P +L+D G + + + G++ + GP++ GY+ EKT+ +
Sbjct: 266 VPGYEARLVD-ESGREVPAGTV---GDLWVRGPSLAPGYWNLPEKTQRTLR 312
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 67/235 (28%), Positives = 95/235 (40%), Gaps = 34/235 (14%)
Query: 90 ADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQ 149
AD F + G TYG A+ L LG K +RVA+ + E
Sbjct: 14 ADRDAPFIETPDGLR--YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYL 71
Query: 150 GCFRRNVTVV---TIYASLGEEALCYSLNETEVTTVICGSK---ELKKLVDLSGQLDTVK 203
R + T Y +L E L Y + + E V+C L K+ +G
Sbjct: 72 ATLRAGAVFLPLNTAY-TLAE--LDYFIGDAEPALVVCDPANFAWLSKIAAAAG----AP 124
Query: 204 HVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTG 263
HV +DA+ S+ ++ F V P AD D+A I+YTSG+TG
Sbjct: 125 HVETLDAD---GTGSLLEAAAAAPDDFETV-------PRGAD-----DLAAILYTSGTTG 169
Query: 264 LPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VAEN--LIAG 315
KG M++HGN L + + + DV + LP+ H L VA N L+AG
Sbjct: 170 RSKGAMLSHGN-LLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAG 223
|
Length = 504 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 5e-13
Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 27/212 (12%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFV-ALQGCFRRNV--TV 158
G E+ +Y + E +GL LG K + V I R E FV A C
Sbjct: 35 GSEEFQSYAELLEEAERILAGLRALGLKPGDSV-ILQLERNEDFVTAFWACVLGGFVPVP 93
Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
V + + E + + KL ++ L VI DA + +A++
Sbjct: 94 VAVPPTYDEP-----------------NAAVAKLRNIWELLG--SPVILTDAALVAALAG 134
Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSA--DVAVIMYTSGSTGLPKGVMMTHGNVL 276
+ + ++ L R P DA + D A+++ TSGSTG+PK V++TH N+L
Sbjct: 135 LRTRAGLEALRVLAIEEL-RSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNIL 193
Query: 277 ATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
A + + V DV L ++PL HV +V
Sbjct: 194 ARSAGTV-QVNGFTPDDVSLNWMPLDHVGGIV 224
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 40/111 (36%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSV---GRVGAP 477
R+RFI S APL + G P+ + YG+TE A S V G VG P
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEA-AHQIASNPLPPLVRKPGSVGRP 177
Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK 528
+ ++D +G L P GEIVI GPNVT GY N E +E ++
Sbjct: 178 AGVE-VAILD-DDGRPL---PPGQEGEIVIRGPNVTAGYLNNPEANREAFR 223
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 8e-13
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
D A+I YTSG+TG PKG M+TH NVL ++ + L D L +PL HV LV
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRL-GLTEGDRTLVPVPLFHVFGLVLG 61
Query: 311 NLIA 314
L +
Sbjct: 62 VLAS 65
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 27/206 (13%)
Query: 101 LGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVV 159
+ E E +TY Q E + A+ L +L KK ER+AI + E+ V L + V
Sbjct: 22 ITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAV 81
Query: 160 TIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSV 219
+ L E L + L ++ TTV+ K + + ++ V+ VI
Sbjct: 82 PLNIRLTENELIFQLKDSG-TTVLFVEKTFQNMALSMQKVSYVQRVI------------- 127
Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL-AT 278
ITS +I R+ + + +I YTSG+TG PKG ++T N+
Sbjct: 128 ------SITSLK--EIEDRK-IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNA 178
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHV 304
++ I DL D + LPL H+
Sbjct: 179 LNNTFAI--DLTMHDRSIVLLPLFHI 202
|
Length = 496 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 15/200 (7%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
TY + ++ AS L++LG K + VA+ A A G +V + L
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVI-CMDANIPSAVSSVEQSGRWK 226
+ + + LN +E + + L + L T + + + P+A S E
Sbjct: 91 DDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYE-- 148
Query: 227 ITSFADVQILGRENPVDADYPVSA--DVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAVM 283
+L +P P D + YTSG+TG PKGV+ TH G L + V+
Sbjct: 149 -------DLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVI 201
Query: 284 TIVPDLGSKDVYLAYLPLAH 303
+ + VYL LP+ H
Sbjct: 202 EW--GMPDRPVYLWTLPMFH 219
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-12
Identities = 51/203 (25%), Positives = 71/203 (34%), Gaps = 17/203 (8%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
TY +A A LA G K+ +RVA+ R E+ GC V I +
Sbjct: 45 TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTA 104
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
L L + L + ++ + L L + V +DA +SV
Sbjct: 105 LRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDA-----PASVSVPAG 159
Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL---ATVSA 281
W + + P A D A I+YTSG+TG KGV H +
Sbjct: 160 WSTAPLPPL-----DAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAE 214
Query: 282 VMTIVPDLGSKDVYLAYLPLAHV 304
+ I D DV LPL H
Sbjct: 215 DLEIGAD----DVLYTTLPLFHT 233
|
Length = 542 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459
GL L L R + ++ LSGG L T G I +GYG+TET
Sbjct: 306 GLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSP 365
Query: 460 GGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519
+ + VG +G P+P + K+ID +G L GE+ + GP V GY++
Sbjct: 366 VVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGEV---GELCVKGPQVMKGYWQR 421
Query: 520 EEKTKEV 526
E T E+
Sbjct: 422 PEATDEI 428
|
Length = 562 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 107/443 (24%), Positives = 164/443 (37%), Gaps = 125/443 (28%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
L+Y Q ++ + A L LG K R+A+ D +W +A C + + + I
Sbjct: 3 LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ + LN+ +I D + L T
Sbjct: 60 AQQTQHLLNDAGADLLISDDP------DAASALHTPFA---------------------- 91
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
T D+ I R + + P A A I YTSGSTG PKGV ++ L TV+ +
Sbjct: 92 -TLGEDLYIALRPSANPVELP--AGTAKITYTSGSTGQPKGVCLSAAA-LETVAQSLAEA 147
Query: 287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346
+ + +L LPLA +L EN IAGV Y PL + G +L
Sbjct: 148 IAILEPERHLCLLPLATLL----EN-IAGV-----Y-APLLM------------GATVIL 184
Query: 347 RPTVMASVPAILDRVRDGVRKKVDAKGGLS-KKLFDLAYARRLSAINGSWFGAWG----- 400
P +A + GLS D A+ ++A++ W
Sbjct: 185 VP--LAEL-------------------GLSGSSGLDP--AQFVAALS-----RWQPHSLI 216
Query: 401 -LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETC 458
+ +LL L+ + + +RF+ GGA +S QR LG P+ +GYGL+E C
Sbjct: 217 LVPQLLMALVAAVEQGPLPPESLRFVAVGGARVSPSLLQRARA--LGLPVYEGYGLSE-C 273
Query: 459 AGGTFSEV-----DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVT 513
A S V G VG PLP + + + GEI++ G ++
Sbjct: 274 A----SVVSLNTPGADRPGSVGKPLPHVQVSIAN--------------DGEILVRG-SLM 314
Query: 514 VGYFKNEEKTKEVYK----VMLD 532
+GY T + + LD
Sbjct: 315 LGYLGEPPATDDWWATGDLGHLD 337
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 26/219 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKE-ERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
LTYG+ ++ FA+ L Q K +R+A+ ++ VA+ G R + VV
Sbjct: 50 LTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNTNPLY 109
Query: 166 GEEALCYSLNETEVTTVICGSKELKKLVDLSGQL---DTVKHVIC--------------M 208
+ + N++ ++C L + L+ ++ VKHVI +
Sbjct: 110 TAREMEHQFNDSGAKALVC----LANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLI 165
Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGV 268
+A + V + F D G PV P + DVAV+ YT G+TG+ KG
Sbjct: 166 NAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGA 225
Query: 269 MMTHGNVLAT---VSAVMTIVPDLGSKDVYLAYLPLAHV 304
M+TH N++A A+M + G ++ +A LPL H+
Sbjct: 226 MLTHRNLVANMLQCRALMGSNLNEG-CEILIAPLPLYHI 263
|
Length = 562 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 96/435 (22%), Positives = 163/435 (37%), Gaps = 111/435 (25%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQ-GCFRRNVTVVTIYA 163
W TY + + A+ L + G ER+A+ A W VAL C R V IY
Sbjct: 22 RW-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSV-WLVALHFACAR----VGAIYV 75
Query: 164 SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSG 223
L + L+ +E+ ++ D ++ D + +G
Sbjct: 76 PLN-----WRLSASELDALLQ---------------DAEPRLLLGDDAV--------AAG 107
Query: 224 RWKITSFAD-VQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS-- 280
R + A + P D V++I++TSG++G PKGVM++ N+ T
Sbjct: 108 RTDVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNF 167
Query: 281 AVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDT-SSKIKKGT 339
V+ V + +L P+ H++ LI V + G + +++ K G
Sbjct: 168 GVLGRV---DAHSSFLCDAPMFHII-----GLITSVRPVLAVGGSILVSNGFEPKRTLGR 219
Query: 340 QGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
GD + L T VP + R + FD A R L+A+
Sbjct: 220 LGDPA-LGITHYFCVPQMAQAFRA-------------QPGFDAAALRHLTAL-------- 257
Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459
+GGAP +A+ + G P+ G+G++E A
Sbjct: 258 --------------------------FTGGAPHAAEDILGW-LDDGIPMVDGFGMSE--A 288
Query: 460 GGTF-----SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP--MPRGEIVIAGPNV 512
G F +V + G G P P +++D +D P +P GE+++ GPN+
Sbjct: 289 GTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQG-----NDCPAGVP-GELLLRGPNL 342
Query: 513 TVGYFKNEEKTKEVY 527
+ GY++ + T +
Sbjct: 343 SPGYWRRPQATARAF 357
|
Length = 488 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 9/203 (4%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + E FA+ L Q G +RVA+F ++ + G + V +
Sbjct: 59 ITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFR 118
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVI--CMDANIPSAVSSVE---- 220
E L Y LN+ ++ + + + + +++HVI + +P+ +
Sbjct: 119 EHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAEPTLPLPDSL 177
Query: 221 QSGRWKITSFADVQILGRENPVDADYPVSA--DVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
++ R D+ R P A +A + YT G+TG+PKG T +++ T
Sbjct: 178 RAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYT 237
Query: 279 VSAVMTIVPDLGSKDVYLAYLPL 301
+A + G V+L++LP
Sbjct: 238 AAAAYAVAVVGGEDSVFLSFLPE 260
|
Length = 567 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 21/209 (10%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G +Y + E I A+ LG +K ++VA+ D E+ G + +V I
Sbjct: 33 GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPI 92
Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT-VKHVICMDANIPSAVSSVE 220
A L E + L ++ + ++ ++ + + T ++H+ +P
Sbjct: 93 NARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALP------- 145
Query: 221 QSGRWKITSFADVQILGRENPVDADY--PVSA-DVAVIMYTSGSTGLPKGVMMTHGNVL- 276
+ L + P Y P+S D A I++TSG+T PKGV++TH N+
Sbjct: 146 -----ADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRF 200
Query: 277 -ATVSAVMTIVPDLGSKDVYLAYLPLAHV 304
SA L DVYL +P H+
Sbjct: 201 AGYYSAWQC---ALRDDDVYLTVMPAFHI 226
|
Length = 517 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 5e-11
Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 31/196 (15%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY + E A L G + VA+ + E VA+ + V + +
Sbjct: 13 LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L + L ++ ++ + L L ++ ++ + + +
Sbjct: 73 AERLAFMLEDSGARVLL-TDESLAPLARADQ-----LPLVILEEELDAEDAGPPAP---- 122
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
VDAD D+A +MYTSGSTG PKGV + H V+ V I
Sbjct: 123 --------------AVDAD-----DLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYI- 162
Query: 287 PDLGSKDVYLAYLPLA 302
L D +L PL+
Sbjct: 163 -ALDPDDRFLQLSPLS 177
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 36/78 (46%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
DVAVI YTSG+TGLPKG M TH VLAT +A L V LA+LPL HV +
Sbjct: 85 DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSG-LTPDSVLLAFLPLFHVAGMQ-- 141
Query: 311 NLIAGVGSAIGYGTPLTL 328
+ + I G L L
Sbjct: 142 ---GSMNAPIYTGATLVL 156
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 6e-11
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
D A I+YTSG+TG PKGV++TH +L + + + L DV L LPL H+
Sbjct: 81 VDTAAILYTSGTTGPPKGVLLTHAQLLFA-ARLAARLLGLRPDDVLLTPLPLFHI----- 134
Query: 310 EN-LIAGVGSAIGYGTPLTLTD 330
N V +A+ G L L
Sbjct: 135 -NAQAYSVYAALLVGATLVLLP 155
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 94/437 (21%), Positives = 135/437 (30%), Gaps = 138/437 (31%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + E A GL G +K +RV + A+ F+ V I +G
Sbjct: 3 LTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMG 62
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
K L + C++ P A +
Sbjct: 63 -------------------RKHLGR---------------CLEEAEPDAFIGI------- 81
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
P + D A I++TSGSTG PKGV+ TH A + A+ ++
Sbjct: 82 --------------------PKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLY 121
Query: 287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGT--QGDAS 344
+ D LA P + GV + I P + AS
Sbjct: 122 G-IREGDRDLAAFPPFALF-----GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGAS 175
Query: 345 VLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKL 404
V S PA+L V + E
Sbjct: 176 C----VFGS-PALLKNVAR-----------------------------------YCEE-- 193
Query: 405 LWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICL-GAPIGQGYGLTET--CAG 460
N + +R +LS GAP+ D +RF+ + A I YG TE A
Sbjct: 194 --NGIQLPSLRR--------VLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVAS 243
Query: 461 GTFSEV-----DDSSVGR---VGAPLP---CSFIKLIDWP--EGGYLTSDSPMPRGEIVI 507
EV + G VG P+P I + D P P GEI++
Sbjct: 244 IEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIV 303
Query: 508 AGPNVTVGYFKNEEKTK 524
+GP+VT Y+ E TK
Sbjct: 304 SGPHVTREYYNRPEATK 320
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 9e-11
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
D+A I+YTSGSTG PKGVM++H N+ A ++ + +L D LA LP +
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYL-ELTEDDRILAVLPFSF 54
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
TY A+GL +LG ++ + V + E+ +A G RR T
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ + +I S + KL L+ V+ +D +
Sbjct: 111 PAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVT--VVTIDDPPEGCL---------- 158
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTI 285
F+++ EN + DV + Y+SG+TGLPKGVM+TH ++ +V+ V
Sbjct: 159 --HFSEL-TQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 215
Query: 286 VPDLG--SKDVYLAYLPLAHVLELVAEN--LIAG--VGSAI 320
P+L S DV L LP+ H+ L N L+ G VG+AI
Sbjct: 216 NPNLYFHSDDVILCVLPMFHIYSL---NSVLLCGLRVGAAI 253
|
Length = 537 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 19/174 (10%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY + E A L G + V I+A R E+ A+ G F+ V +
Sbjct: 29 LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV 88
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMD-----ANIPSAVSSVEQ 221
E+ L Y L++++ ++ + ++ ++ +L ++ ++ ++ +P AV
Sbjct: 89 EDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVD---- 144
Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV 275
+ D L +P S D ++YT G+TG+PKGVM ++
Sbjct: 145 --------YED--ALAAGSPERDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 86/402 (21%), Positives = 130/402 (32%), Gaps = 109/402 (27%)
Query: 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKL 192
RVA+ A +A+ G V VV + G + L ++ L
Sbjct: 47 RVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAW---------L 97
Query: 193 VDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADV 252
+ HV V++ R + P
Sbjct: 98 GPAPDDPAGLPHV--------------------------PVRLHARSWHRYPE-PDPDAP 130
Query: 253 AVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI---VPDLGSKDVYLAYLPLAHVLELVA 309
A+I+YTSG+TG PKGV+++ + A + A+ D DV + LPL HV
Sbjct: 131 ALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTAD----DVLVHGLPLFHV----- 181
Query: 310 ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRP--TVMASVPAILDRVRDGVRK 367
L+ GV + G T + + A L T+ VP + R+
Sbjct: 182 HGLVLGVLGPLRIGNRFVHT-----GRPTPEAYAQALSEGGTLYFGVPTVWSRIAA---- 232
Query: 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILS 427
D AR L GA R ++S
Sbjct: 233 -------------DPEAARALR-------GA------------------------RLLVS 248
Query: 428 GGAPLSA-DTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKL 485
G A L R + G + YG+TET + D + G VG PL +L
Sbjct: 249 GSAALPVPVFDRLAALT-GHRPVERYGMTETLI-TLSTRADGERRPGWVGLPLAGVETRL 306
Query: 486 IDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
+D +GG + D GE+ + GP + GY + T +
Sbjct: 307 VD-EDGGPVPHD-GETVGELQVRGPTLFDGYLNRPDATAAAF 346
|
Length = 471 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 7/76 (9%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL----GSKDVYLAYLPLAHV-- 304
DVA IMY+SG+TG KGV++TH N++A V + GS +VYLA LP+ H+
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYG 258
Query: 305 LELVAENLIAGVGSAI 320
L L L++ +GS I
Sbjct: 259 LSLFVVGLLS-LGSTI 273
|
Length = 560 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 6e-10
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAE 310
D A+I++TSG+TG PKGV +TH N+LA+ + L D L +PL H+
Sbjct: 3 DPALILHTSGTTGRPKGVPLTHKNLLASARNI-AKSHKLTPSDRCLNVMPLFHI-----H 56
Query: 311 NLIAGVGSAIGYG 323
LI + + + G
Sbjct: 57 GLIVSLLATLLAG 69
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 6e-10
Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 53/236 (22%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G+ +TY + +C FA+ L LG KK +RVAI+ E VA+ C R +
Sbjct: 94 GDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVV 153
Query: 162 YASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVDLS-GQLDTVKHVICM---D 209
+ EAL + + VI G K LK VD + +V+ VI +
Sbjct: 154 FGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTG 213
Query: 210 ANIPSAVSSVEQSGRWKITSFADV---QILGREN------PVDADYPVSADVAVIMYTSG 260
++ GR D+ +++ + P+DA+ P+ I+YTSG
Sbjct: 214 GDVDW------VEGR-------DLWWHELVAGASDECEPEPMDAEDPL-----FILYTSG 255
Query: 261 STGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV--------------YLAYLPLA 302
STG PKGV+ T G L + M V D DV Y+ Y PLA
Sbjct: 256 STGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLA 311
|
Length = 637 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 9e-10
Identities = 44/190 (23%), Positives = 65/190 (34%), Gaps = 51/190 (26%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
TY + + ASGLA LG K +RV I+ E VAL + V I++ G
Sbjct: 8 WTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFG 67
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+A+ L + E +I L++
Sbjct: 68 PDAVATRLQDAEAKVLITADGFLRR----------------------------------- 92
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
G+ + D A+I+YTSG+TG PKG + TH + +
Sbjct: 93 ----------GKR------VDLKDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFC 136
Query: 287 PDLGSKDVYL 296
DL D L
Sbjct: 137 FDLKPGDRLL 146
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 27/212 (12%)
Query: 99 LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVA-----LQGCFR 153
L LG+ TYGQ + I + LG + VA+ + R E +A L G R
Sbjct: 31 LVLGDTRL-TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRR 89
Query: 154 RNVTVVTIYASLGEEALCYSLNETEVTT-VICGSKELKKLVDLSGQLDTVKHVICMDANI 212
T + SL + A Y L + ++T ++ + +++ + L ++ ++KHV+ + +
Sbjct: 90 ---TALHPLGSLDDHA--YVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGP-V 143
Query: 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH 272
P V + F + V A + D+A + YT G+TG PKGVM TH
Sbjct: 144 PDGVDLLAA-----AAKFGPAPL------VAAA--LPPDIAGLAYTGGTTGKPKGVMGTH 190
Query: 273 GNVLATVSAVMTIVPDLGSKDVYLAYLPLAHV 304
+ +AT++ + + + +L PL+H
Sbjct: 191 RS-IATMAQIQLAEWEWPADPRFLMCTPLSHA 221
|
Length = 524 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 79/402 (19%), Positives = 139/402 (34%), Gaps = 71/402 (17%)
Query: 46 FTSLVSTSWE---GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLG 102
F + + G+ +L E++E+S H LG + G
Sbjct: 412 FALNLPREYNPLAGVRSLGEMWERSVTRHSTFRCLG------------------QTSESG 453
Query: 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIY 162
E EWLTYG SGL LG + + + + + + C T + +
Sbjct: 454 ESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLV 513
Query: 163 ASLGEEALCYSLNETEVTTVI-----------CGSKELKKLVDLSGQLDTVKHVICMDAN 211
+ ++E ++ V C S++L+ +V D H + D N
Sbjct: 514 GK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLN 571
Query: 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMY-----TSGSTGLPK 266
I + + V+ GR PV V Y TS S
Sbjct: 572 I-------------TLIPYEFVEQKGRLCPVPLK-EHVTTDTVFTYVVDNTTSASGDGLA 617
Query: 267 GVMMTHGNVLATVSA-VMT-IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT 324
V +TH +VL +S VMT ++P K + + + P A + V V +G+
Sbjct: 618 VVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVF------VLGLFAHGS 671
Query: 325 PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAY 384
+ D + Q +PT++ + P++ R + + + + LF+ A+
Sbjct: 672 AVATVDAAH-----LQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAF 726
Query: 385 ARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426
R IN + L + F + +LGG + I+
Sbjct: 727 QLRSRLIN-----IHRRDSSLLRFIFFRATQELLGGCVEKIV 763
|
Length = 1452 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 59/238 (24%), Positives = 100/238 (42%), Gaps = 44/238 (18%)
Query: 107 LTYGQAFETICNFASGL-AQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
+TY +A + + FA+ L +L KK +RVA+ ++ +A G R +TVV +
Sbjct: 51 ITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLY 110
Query: 166 GEEALCYSLNE-------------TEVTTVICGSKELKKLV--DLSGQLD---------T 201
L + L + T V VI + +K+++ L L
Sbjct: 111 TPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT-PVKQVITTGLGDMLGFPKAALVNFV 169
Query: 202 VKHV--ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTS 259
VK+V + + I A+ F + LGR++ + D+A + YT
Sbjct: 170 VKYVKKLVPEYRINGAIR------------FREALALGRKHSMPTLQIEPDDIAFLQYTG 217
Query: 260 GSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS----KDVYLAYLPLAHVLELVAENLI 313
G+TG+ KG M+TH N++A + + G +V + LPL H+ L A L+
Sbjct: 218 GTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLV 275
|
Length = 560 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 423 RFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCS 481
R+ L G APL + R G I +GYGLTE + + D + +G VG LP
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 482 FIK-LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY 516
++ +I G YL + G + IAGPNV GY
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGY 431
|
Length = 632 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 39/177 (22%), Positives = 54/177 (30%), Gaps = 32/177 (18%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTYG+ A+ L G + VA+ E VA+ G V I
Sbjct: 13 LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L V+ + Q
Sbjct: 73 AERRAAILARAGARAVL-------------------------------TDPGLAQPEEAP 101
Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
E+P V D+A +++TSGSTG PKGVM+TH + T+ V
Sbjct: 102 DLLVVADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDV 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 73/308 (23%), Positives = 108/308 (35%), Gaps = 99/308 (32%)
Query: 249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
D +I +TSG+TG PKGV ++H ++ A + IV G DVYL PL H
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCH----- 224
Query: 309 AENLIAGVGSAI------GYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362
I G+ SA+ L D + ++ Q + T M +VPA++ +
Sbjct: 225 ----IGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNV-----TSMITVPAMMADLI 275
Query: 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRI 422
RK + K S +
Sbjct: 276 SLTRKSMTWKVFPS---------------------------------------------V 290
Query: 423 RFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETCAGGTFSEVDD------------- 468
R IL+GG LS+ + A + YG+TE C+ TF + D
Sbjct: 291 RKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTV 350
Query: 469 -----SSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518
SSV + VG P P +K + D G I+ GP+V +GY+
Sbjct: 351 NQTKSSSVHQPQGVCVGKPAPHVELK---------IGLDESSRVGRILTRGPHVMLGYWG 401
Query: 519 NEEKTKEV 526
+T V
Sbjct: 402 QNSETASV 409
|
Length = 563 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 75/300 (25%), Positives = 108/300 (36%), Gaps = 89/300 (29%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV---MTIVPDLGSKDVYLAYLPLAHVLEL 307
D+A I++TSGSTG PKGV+ THG A + A+ I P ++ L PL
Sbjct: 175 DMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPG----EIDLPTFPL-----F 225
Query: 308 VAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV-PA-ILDRVRD-G 364
G+ S I D + RP A+V PA + + G
Sbjct: 226 ALFGPALGMTSVIPD------------------MDPT--RP---ATVDPAKLFAAIERYG 262
Query: 365 VRKKVDAKGGLSKKLF-DLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIR 423
V LF A RL G +G N + +R ++
Sbjct: 263 VT-----------NLFGSPALLERL--------GRYGEA----NGIKLPSLRRVISA--- 296
Query: 424 FILSGGAPLSADT-QRFINICL--GAPIGQGYGLTE----TCAGGT---FSEVDDSSVGR 473
GAP+ +RF + L A I YG TE + F+ + G
Sbjct: 297 -----GAPVPIAVIERFRAM-LPPDAEILTPYGATEALPISSIESREILFATRAATDNGA 350
Query: 474 ---VGAPLPCSFIKLIDWPEGGYLTSD--SPMPR---GEIVIAGPNVTVGYFKNEEKTKE 525
VG P+ +++I + D + GEIV+AGP VT Y+ E T+
Sbjct: 351 GICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRL 410
|
Length = 552 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 422 IRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS--VGRVGAPL 478
+R+ +GGAP + + FI+ G GQG+G+TET +D+ VG +G P+
Sbjct: 266 VRWFYNGGAPCPEELMREFID--RGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPV 323
Query: 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
+LID + GE++I GPNV Y+ + T+E
Sbjct: 324 LFCDYELID-ENKNKV---EVGEVGELLIRGPNVMKEYWNRPDATEE 366
|
Length = 496 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 65/274 (23%), Positives = 103/274 (37%), Gaps = 35/274 (12%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G +Y + + A GLA+LG + + V+ R E+ C R + +
Sbjct: 49 GAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPL 108
Query: 162 YASLGEEALCYSLNETEVTTVIC-----GSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216
E L + LN + + G +L +L ++ V+ +D + +
Sbjct: 109 MPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSF 168
Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
V + T A + G P DV ++YTSG+TG PKGVM T +
Sbjct: 169 DRVLMTPERDDTPDAAAILAG-------PRPSPDDVTQLIYTSGTTGEPKGVMHTANTLF 221
Query: 277 ATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT--PLTLTDTS-- 332
+ + + +LG DV L P+AH + YG PL L T+
Sbjct: 222 SNIHPYAERL-ELGGGDVILMASPMAHQ-------------TGFMYGLMMPLILNATAVL 267
Query: 333 SKIKKGTQGDASVLRPT----VMASVPAILDRVR 362
I + A ++R T MAS P + D R
Sbjct: 268 QDIWNPARA-AELIRETGVTFTMASTPFLTDLCR 300
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
TY + ++ + A L +LG K +RV I+ E +A+ C R ++
Sbjct: 74 YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133
Query: 167 EEALCYSLNETEVTTVI---CGSK-----ELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
+ L +++ + ++ G + K L+D + +L K + N V +
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLILNRGQ-VPA 192
Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
+ GR +A+ ++ + PVD S D I+YTSG+TG PKGV+ G
Sbjct: 193 PLKPGRD--LDWAE--LMAKARPVDCVPVESTDPLYILYTSGTTGKPKGVVRDTGGYAVA 248
Query: 279 VSAVMTIVPDLGSKDVYLA 297
+ M + + DV+ A
Sbjct: 249 LKWSMRNIYGIKPGDVFWA 267
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-09
Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 445 GAPIGQGYGLTETC-----------AGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGY 493
G I +GYG TET A + S G VG PLP ++++D PE
Sbjct: 923 GIRILEGYGATETSPVASVNLPDVLAADFKRQTG-SKEGSVGMPLPGVAVRIVD-PETF- 979
Query: 494 LTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYK 528
+P GE I+I GP V GY + EKT EV K
Sbjct: 980 ----EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIK 1013
|
Length = 1146 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
E TY + E FA+ L +LG +K +RV IF E + AL G + V ++ +
Sbjct: 72 EKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEA 131
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
EEA+ L ++E +I L++ + L ++KHV+ + ++ +++ +
Sbjct: 132 FMEEAVRDRLEDSEAKVLITTPALLERKP--ADDLPSLKHVLLVGEDVEEGPGTLDFNAL 189
Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL---ATVSA 281
+ S + I D + D A++ YTSGSTG PKGV+ H +L T
Sbjct: 190 MEQAS-DEFDIE----WTDRE-----DGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKY 239
Query: 282 VMTIVPDLGSKDVY 295
V+ DL DVY
Sbjct: 240 VL----DLHEDDVY 249
|
Length = 570 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
+R +SG APL A+T R G I + YG+TET + + G VG PLP
Sbjct: 270 HMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPG 329
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKE 525
+++ D PE G + +P GE I + GPNV GY++ EKT E
Sbjct: 330 VSLRVTD-PETG-----AELPPGEIGMIEVKGPNVFKGYWRMPEKTAE 371
|
Length = 504 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 23/88 (26%)
Query: 241 PVDADYPVSA-------------------DVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
P+D PV D A ++YTSGSTG PKGV++TH N+ + A
Sbjct: 71 PIDPSAPVERLQFIIEDSGATVVLTSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRA 130
Query: 282 VMTIVPDLGSKDVYLAYLPLA---HVLE 306
I+ + D L + +A +LE
Sbjct: 131 EGAILG-IRPGDRVLQFASIAFDVSILE 157
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 20/201 (9%)
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
A+ L + G+ K+ VA++ + + G + VV + GE AL + L+++
Sbjct: 60 AAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGA 119
Query: 180 TTVICGSKELKKLVDLS------GQLDTVKHVICMDAN---IPSAVSSVEQSGRWKITSF 230
+I + +L L+ ++ G LD + ++C D N + + + + R I ++
Sbjct: 120 RLLI--TSDLAALLPMALKFLEKGLLDRL--IVCEDDNWGKVGTPQAPIPADPR--IVTY 173
Query: 231 ADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV----MTIV 286
AD + G P + DVA++ YT G+TGLPKG M+THGN+ + VS
Sbjct: 174 ADF-VKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSR 232
Query: 287 PDLGSKDVYLAYLPLAHVLEL 307
G + + LPL H+ L
Sbjct: 233 ATRGDVERVICVLPLFHIYAL 253
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 47/189 (24%), Positives = 65/189 (34%), Gaps = 57/189 (30%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
L+Y + E A+ LA LG K +RVA E VA+ +R V ++ + G
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+A+ Y L + V+ G+LD
Sbjct: 61 PKAIEYRLGHSGAKVVVTN-------AANRGKLDD------------------------- 88
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
D+ MYTSG+TGLPKGV + N LA A M
Sbjct: 89 ------------------------DLFAQMYTSGTTGLPKGVPVPL-NALAAFYAYMRYA 123
Query: 287 PDLGSKDVY 295
DL DV+
Sbjct: 124 IDLRDDDVF 132
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY + + +C A+ L +G KK + V I+ E +A+ C R ++A
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFS 180
Query: 167 EEALCYSLNETEVTTVIC------GSK--ELKKLVDLS---GQLDTVKHVICMDANIPSA 215
E+L + + + VI G K LK +VD + + V IC+ A
Sbjct: 181 AESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA 240
Query: 216 VSSVEQSGRWKITSFADVQILGRE---NPVDADYPVSADVA--------VIMYTSGSTGL 264
+ + +W+ GR+ V +YP +V ++YTSGSTG
Sbjct: 241 MK--REDTKWQE---------GRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGK 289
Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
PKGV+ T G + + D DVY
Sbjct: 290 PKGVLHTTGGYMVYTATTFKYAFDYKPTDVY 320
|
Length = 666 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 75/316 (23%), Positives = 113/316 (35%), Gaps = 86/316 (27%)
Query: 231 ADVQILGRENPVDADYPVSADV-------AVIMYTSGSTGLPKGVMMTHGNVLA-TVSAV 282
+D +LG E+ + P A V A+IMYTSG+TG PKG ++TH N+ ++ +
Sbjct: 148 SDDSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCL 207
Query: 283 MTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
T D+ S DV +PL H IAG+GS L L G
Sbjct: 208 RTNGADINS-DVGFVGVPLFH---------IAGIGSM---LPGLLL------------GA 242
Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
+V+ P +LD E
Sbjct: 243 PTVIYPLGAFDPGQLLD--------------------------------------VLEAE 264
Query: 403 KLLWNLLVFSKVRAILGG--------RIRFILSGGAPLSADTQRFINICL-GAPIGQGYG 453
K+ LV ++ +A+ +R + G AP S R + A I +G
Sbjct: 265 KVTGIFLVPAQWQAVCAEQQARPRDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFG 324
Query: 454 LTETCAGGTFSEVDDS--SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511
TE +D+ +G VG +P +++D + GEIV P
Sbjct: 325 QTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD----ENMNDVPVGEVGEIVYRAPT 380
Query: 512 VTVGYFKNEEKTKEVY 527
+ GY+ N E T E +
Sbjct: 381 LMSGYWNNPEATAEAF 396
|
Length = 542 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 99/436 (22%), Positives = 149/436 (34%), Gaps = 99/436 (22%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G+ LTY Q + FAS L LG + +RV I+ AE A+ C R +
Sbjct: 79 GQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVV 138
Query: 162 YASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVD--LSGQLDTVKHVICMDAN 211
+ +L +++ ++ G K K L+D ++ HV+ +D
Sbjct: 139 FGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRG 198
Query: 212 IPSAVSSVEQSGRWKITSFADVQILG-RENPVDADYPV----SADVAVIMYTSGSTGLPK 266
+ ++ DV R DA PV S + + I+YTSG+TG PK
Sbjct: 199 L----------APMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPK 248
Query: 267 GVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVL---ELVAENLIAGVGSAIGYG 323
GV G ++ M + + + V + + V+ +V L+AG + + G
Sbjct: 249 GVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308
Query: 324 TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLA 383
P T D V V R GVR A +
Sbjct: 309 LP-------------TNPDPGVWWSIVE----------RYGVRTMFSAPTAI-------- 337
Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443
R L + +W L L W L G PL T +I
Sbjct: 338 --RVLKKQDAAWLRKHDLSSLHWLFL------------------AGEPLDEPTAHWITDG 377
Query: 444 LGAPIGQGYGLTET------CAGGTFSEVDDSSV--GRVGAPLPCSFIKLIDWPEG---- 491
LG P+ Y TET G +D V G G P+ ++++D G
Sbjct: 378 LGKPVIDNYWQTETGWPVLAIMPG----LDLKPVKLGSPGLPMYGYHLRVLDEATGRPCG 433
Query: 492 ----GYLTSDSPMPRG 503
G LT P+P G
Sbjct: 434 PNEKGVLTVVPPLPPG 449
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 25/216 (11%)
Query: 99 LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTV 158
L G TY + + A GLA+LG + + V+ E+ V C R +
Sbjct: 48 LGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVL 107
Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKK------LVDLSGQLDTVKHVICMDANI 212
+ E L + L E ++ K + L +L ++HV+ + +
Sbjct: 108 NPLMPIFRERELSFMLKHAESKVLVV-PKTFRGFDHAAMARRLRPELPALRHVVVVGGDG 166
Query: 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH 272
+ ++ + W+ IL R P D DV ++YTSG+TG PKGVM T
Sbjct: 167 ADSFEALLITPAWEQEP-DAPAILARLRP-GPD-----DVTQLIYTSGTTGEPKGVMHTA 219
Query: 273 GNVLATVSAVMTIVP-----DLGSKDVYLAYLPLAH 303
++A IVP LG+ DV L P+AH
Sbjct: 220 NTLMA------NIVPYAERLGLGADDVILMASPMAH 249
|
Length = 547 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-08
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 451 GYGLTETCAGGTFSEV--DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA 508
YGLTETC+G T E + +G G L I++ D G +L P +GEI +
Sbjct: 296 AYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWL---PPNMKGEICMR 351
Query: 509 GPNVTVGYFKNEEKTKEVY 527
GP VT GY+K+ EKT E +
Sbjct: 352 GPKVTKGYWKDPEKTAEAF 370
|
Length = 497 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV---MTIVPDLGSKDVYLAYLPLAHVLEL 307
D+A + YTSGST LPKGV ++HGN++A + I DL DV +++LPL H +
Sbjct: 167 DIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGI--DLNPDDVIVSWLPLYHDM-- 222
Query: 308 VAENLIAGVGSAIGYGTPLTL 328
LI G+ I G P L
Sbjct: 223 ---GLIGGLLQPIFSGVPCVL 240
|
Length = 4334 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-08
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
D AVI++TSGS G PKGV+++H N+LA + V + D +D LP+ H L
Sbjct: 794 DPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPEDKVFNALPVFHSFGLTG 851
|
Length = 1140 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 6e-08
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 18/85 (21%)
Query: 451 GYGLTETCAGGTFSEVDD------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR-- 502
YG+TET T + DD ++VGR LP +K++D PE G +PR
Sbjct: 347 AYGMTETSPVSTQTRTDDPLEKRVTTVGRA---LPHLEVKIVD-PETG-----ETVPRGE 397
Query: 503 -GEIVIAGPNVTVGYFKNEEKTKEV 526
GE+ G +V GY+ + EKT E
Sbjct: 398 QGELCTRGYSVMKGYWNDPEKTAEA 422
|
Length = 559 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS---------KDVYLAYLPL 301
D+AV+ YT G+TGL KG M+THGN++A + V + LG ++V +A LPL
Sbjct: 208 DIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPL 267
Query: 302 AHVLELVA 309
H+ A
Sbjct: 268 YHIYAFTA 275
|
Length = 562 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA 309
D A +YTSG+TGLPK +M+H L AV + L DV LPL H +
Sbjct: 81 VDPAFYIYTSGTTGLPKAAIMSHRRWLRA-GAVFGGLGLLKPDDVLYLCLPLYH-----S 134
Query: 310 ENLIAGVGSAIGYGTPLTL 328
L G SA+ G L L
Sbjct: 135 NALTVGWSSALAAGASLAL 153
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS 481
++ + GGA L + G +GYGLTET F+ D +G P+ +
Sbjct: 201 LKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGT 260
Query: 482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK 528
++ID PE G P GEIV+ GP V GY+ E T E +
Sbjct: 261 DARVID-PETGEELP--PGEEGEIVVRGPQVFKGYWNRPEATAESFI 304
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 30/171 (17%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY Q E A+ + + K+ + ++ VA G + + + S+
Sbjct: 26 LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E + + VI ++ S++ G
Sbjct: 86 SERIEMIIEAAGPELVIHTAEL-----------------------------SIDAVGTQI 116
Query: 227 ITSFADVQILGRENPVDADYPVSADVAV-IMYTSGSTGLPKGVMMTHGNVL 276
IT A Q PV D+ V D I+YTSGSTG PKGV ++H N++
Sbjct: 117 ITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLV 167
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI-YA 163
TY + E + A+GL LG + +RVA+ D E+ A + V I A
Sbjct: 2 RRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61
Query: 164 SLGEEALCYSLNETEVTTVIC 184
GEE L + L+ + ++
Sbjct: 62 LRGEE-LAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 43/120 (35%), Positives = 54/120 (45%), Gaps = 29/120 (24%)
Query: 422 IRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTETCAGGTFS----------EVDDSS 470
IR +LSG APL + + L A +GQGYG+TE AG + V S
Sbjct: 300 IRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLAMCLAFAKEPFPVKSGS 357
Query: 471 VGRV--GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKE 525
G V A L K++D PE T S +PR GEI I GP + GY + E T
Sbjct: 358 CGTVVRNAEL-----KIVD-PE----TGAS-LPRNQPGEICIRGPQIMKGYLNDPEATAN 406
|
Length = 537 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 47/139 (33%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 393 GSW-FGAW-GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPL-SADTQRFINICLGAPIG 449
G W F A GL L L+ + + ++ SGG L A +R+ + G I
Sbjct: 304 GKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLT-GCTIV 362
Query: 450 QGYGLTETC-AGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM-PRGEIVI 507
+GYGLTET T + + +G VG P+P + +K+ID +G L P+ RGE+ I
Sbjct: 363 EGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNEL----PLGERGELCI 417
Query: 508 AGPNVTVGYFKNEEKTKEV 526
GP V GY++ E T E
Sbjct: 418 KGPQVMKGYWQQPEATAEA 436
|
Length = 562 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 73/281 (25%), Positives = 118/281 (41%), Gaps = 69/281 (24%)
Query: 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETIC 117
+L ++FEQ+ + D+ +F +++GE +T+ + E
Sbjct: 23 QSLVDMFEQAVARYADQ-------------------PAF--INMGEV--MTFRKLEERSR 59
Query: 118 NFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
FA+ L LG KK +RVA+ ++ +AL G R + VV + L + LN+
Sbjct: 60 AFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLND 119
Query: 177 TEVTTVICGS---KELKKLVD-----------LSGQLDT---------VKHVICM--DAN 211
+ ++ S L+K+V + QL T VK++ + +
Sbjct: 120 SGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKYH 179
Query: 212 IPSAVS--SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVM 269
+P A+S S GR R V + V D+A + YT G+TG+ KG M
Sbjct: 180 LPDAISFRSALHKGR-------------RMQYVKPEL-VPEDLAFLQYTGGTTGVAKGAM 225
Query: 270 MTHGNVLATV-SAVMTIVPDL--GSKDVYLAYLPLAHVLEL 307
+TH N+LA + A P L G + V A LPL H+ L
Sbjct: 226 LTHRNMLANLEQAKAAYGPLLHPGKELVVTA-LPLYHIFAL 265
|
Length = 560 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 25/117 (21%)
Query: 421 RIRFILSGGAPLSADTQ-------RFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR 473
+R ++ GG R +N YG TE T S +
Sbjct: 209 SLRTLILGGEACPQALVDRWSKPRRLLN---------TYGPTEATVTATASRLTPGKPVN 259
Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVY 527
+G PLP ++D + +P GE+ I GP V GY E T E +
Sbjct: 260 IGRPLPNYTCWVLD------PDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKF 310
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKL 485
SGGAPL + F G + G+G+TETC+ GT + G +G LP + +
Sbjct: 319 SGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDV 378
Query: 486 IDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFM 535
+ + +P GE+ I GPNVT GY+ E++ E + + DRF+
Sbjct: 379 VSLDD-----PTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAF--VGDRFL 424
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL 307
D A+I++TSGS G PKGV+ +H ++LA V + TI D D +++ LPL H L
Sbjct: 366 DAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-DFTPNDRFMSALPLFHSFGL 421
|
Length = 718 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 19/219 (8%)
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
A+ LA G ++ +RVA++ EW V C R TV+ + + + L
Sbjct: 49 AAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRA 108
Query: 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQS--GRWKITSFADVQILG 237
++ K + D + L V + V + +
Sbjct: 109 RWLVVWPG-FKGI-DFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPD 166
Query: 238 RENPVDADYPVS-ADVAVIMY-TSGSTGLPKGVMMTHGNVLA---TVSAVMTIVPDLGSK 292
P A + D +++ TSG+T PK V+ +L ++ P
Sbjct: 167 PAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPG---- 222
Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDT 331
V LA LP V + + A+ G PL
Sbjct: 223 AVLLAALPFCGVFGF------STLLGALAGGAPLVCEPV 255
|
Length = 540 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 37/108 (34%)
Query: 241 PVDADYPV------------------SADVAVIMYTSGSTGLPKGVMMTHGNV------- 275
P+D YP D+A ++YTSGSTG PKGV + H N
Sbjct: 78 PLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWA 137
Query: 276 --------LATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV-AENLIA 314
LA V A +I DL V+ ++PL+ +V A+N +A
Sbjct: 138 AAVFSAEELAGVLAATSICFDL---SVFEIFVPLSTGGRVVLADNALA 182
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 67/288 (23%), Positives = 117/288 (40%), Gaps = 76/288 (26%)
Query: 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATV-SAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
D+ + ++SG+TG+ KGVM+TH N++A + S++ ++ P++ + V L +P H+
Sbjct: 184 TDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYG-- 241
Query: 309 AENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASV-------PAILDRV 361
I G+ A TL + + + L + V P IL+ V
Sbjct: 242 ----ITGICCA-------TLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLV 290
Query: 362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR 421
++ + ++ D L KL K++AI
Sbjct: 291 KNPIVEEFD------------------------------LSKL--------KLQAI---- 308
Query: 422 IRFILSGGAPLSAD-TQRFINICLGAPIGQGYGLTE-TCAGGTFSEVDD----SSVGRVG 475
++ APL+ + F G + + YGLTE +C T + + + VG
Sbjct: 309 ----MTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVG 364
Query: 476 APLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
LP +K ID G L ++P GE+ + V GY+ N+E+T
Sbjct: 365 FILPNLEVKFIDPDTGRSLPKNTP---GELCVRSQCVMQGYYNNKEET 409
|
Length = 546 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 69/289 (23%)
Query: 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETIC 117
+LA+L E+S +++ D+ I G++ +TYG+ E
Sbjct: 23 PSLADLLEESFRQYADR-----PAFICM-------GKA-----------ITYGELDELSR 59
Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI---YA---------SL 165
A+ L G K RVAI ++ VA+ R VV + Y
Sbjct: 60 ALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDS 119
Query: 166 GEEALCY----------SLNETEVTTVICGSKELKKLVDLSGQLDT--VKHVICM--DAN 211
G EA+ L +T V V+ S + L+ G + V+ V M +
Sbjct: 120 GAEAIVVLENFATTVQQVLAKTAVKHVVVAS--MGDLLGFKGHIVNFVVRRVKKMVPAWS 177
Query: 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMT 271
+P V F D G DVA + YT G+TG+ KG +
Sbjct: 178 LPGHVR------------FNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLL 225
Query: 272 HGNVLATV---SAVMTIVPDLGSKD---VYLAYLPLAHVLELVAENLIA 314
H N++A V A + + + ++ LPL H+ L L+
Sbjct: 226 HRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLG 274
|
Length = 557 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 65/297 (21%), Positives = 100/297 (33%), Gaps = 73/297 (24%)
Query: 249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
SAD ++YT G+TG+PKGVM ++ + LG D L + + V
Sbjct: 2 SADDLYMLYTGGTTGMPKGVMWRQEDIFRVL---------LGGPDFATGEPTLEELAKQV 52
Query: 309 AEN-----------LIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357
A L+ G G + G VL P +
Sbjct: 53 AAGGAGTRFLPACPLMHGAGQWLALSALFA-------------GGTVVLLPDDKFDPDRV 99
Query: 358 LDRVRDGVRKKVDAKGGLSKKLF---DLAYARRL-SAINGSWFGAWGLEKLLWNLLVFSK 413
V + +V+ L D A+AR L A+ + G + L L
Sbjct: 100 WRTV---EKHRVNT-------LVIVGD-AFARPLLEALEAA--GRYDLSSL--------- 137
Query: 414 VRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVG 472
R I S GA S + Q + + + G +ET GG+ S
Sbjct: 138 ---------RAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGS-SVSRAGGAS 187
Query: 473 RVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529
G ++D +G + S G I G V +GY+K+ EKT + ++
Sbjct: 188 ATGKFELGPDTVVLD-EDGSEVPPGSGEV-GWIARGGR-VPLGYYKDPEKTAKTFRE 241
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 7e-07
Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 26/167 (15%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
L+Y + A L G E RVAI A+ E VAL + V + +
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYP 2088
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L Y L ++ ++ L +L V + +++ W
Sbjct: 2089 AERLAYMLEDSGAALLLTQR-------HLLERLPLPAGVARLP---------LDRDAEW- 2131
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHG 273
AD + + ++A ++YTSGSTGLPKGV ++HG
Sbjct: 2132 ----ADYPDTAPAVQLAGE-----NLAYVIYTSGSTGLPKGVAVSHG 2169
|
Length = 5163 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 47/146 (32%)
Query: 420 GRIRFILSGGAPLSADT-QRFINICLGAPIG-------QGYGLTETCAGGTFS------- 464
+R+I++ G + A T +RF+ L AP G +G++ETC+G T+S
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLE--LLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGP 346
Query: 465 ----EVDDSSVGR----------------VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504
+ DS G +G P+P I+++D + +P GE
Sbjct: 347 DTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-------EDGALLPEGE 399
Query: 505 I---VIAGPNVTVGYFKNEEKTKEVY 527
+ + GP VT GY++N E E +
Sbjct: 400 VGRLQVRGPTVTSGYYRNPEANAEAF 425
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 451 GYGLTETCAGGTFSEVDDSSV---GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI 507
GYGL+E TF+ +DD G +G + K+++ G + GE+++
Sbjct: 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEV---GELLV 368
Query: 508 AGPNVTVGYFKNEEKTKE 525
GPNV GY+ + E T
Sbjct: 369 RGPNVMKGYYDDPEATAA 386
|
Length = 513 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 53/257 (20%), Positives = 92/257 (35%), Gaps = 51/257 (19%)
Query: 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETIC 117
T+ E F + C E LG+ L+Y Q + +
Sbjct: 19 KTVLESFLKLCSEMT-------------------TATVCWDEQLGK---LSYNQVRKAVI 56
Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
A+ +++ ++ + I A ++A V I S G + N
Sbjct: 57 ALATKVSKY---PDQHIGIMMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLV 113
Query: 178 EVTTVICGSKELKKLVDLSGQ----------LDTV-KHVICMDANIPSAVSSVEQSGRWK 226
VT V+ + ++ L G+ ++ V K + + S+ W
Sbjct: 114 GVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSI--PFEWL 171
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
+ F + ++ DVAVI++TSG+ LPKGV +TH N+LA A +
Sbjct: 172 MRWFG---VSDKD---------PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF 219
Query: 287 PDLGSKDVYLAYLPLAH 303
DV +++LP H
Sbjct: 220 -SPKEDDVMMSFLPPFH 235
|
Length = 539 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 30/198 (15%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
L+Y + A L G + V I + E V L + V +
Sbjct: 538 LSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYP 597
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSV--EQSGR 224
++ L Y L+++ V ++ S L +L +P+ + S+ ++
Sbjct: 598 QDRLAYMLDDSGVRLLLTQSHLLAQL------------------PVPAGLRSLCLDEPAD 639
Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284
+ NP A P + +A ++YTSGSTG PKGV ++HG LA V+
Sbjct: 640 L-------LCGYSGHNPEVALDPDN--LAYVIYTSGSTGQPKGVAISHGA-LANYVCVIA 689
Query: 285 IVPDLGSKDVYLAYLPLA 302
L + D L A
Sbjct: 690 ERLQLAADDSMLMVSTFA 707
|
Length = 3956 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 37/100 (37%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 427 SGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGT--FSEVDDSSVGRVGAPLPCSFI 483
G APLS Q F+ QGYG+TE+ A GT F+ S VG P
Sbjct: 326 CGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQA 385
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
K++DW G L P GE+ I GP V GY N + T
Sbjct: 386 KVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKAT 422
|
Length = 560 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD- 467
L FSK+ GG G A +R++ + G PI +GYGL+ET T + VD
Sbjct: 324 LDFSKLIVANGG-------GMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDA 375
Query: 468 DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
G +G PLP + + + D +G L P GEI I GP V GY+ ++T
Sbjct: 376 TEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEP---GEICIRGPQVMAGYWNRPDETA--- 428
Query: 528 KVM 530
KVM
Sbjct: 429 KVM 431
|
Length = 557 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 61/310 (19%), Positives = 97/310 (31%), Gaps = 72/310 (23%)
Query: 226 KITSFADVQIL----GRENPVDADYPVSAD---VAVIMYTSGSTGLPKGVMMTHGNVLAT 278
++ VQ+L G EN +A+ + +A ++YTSGSTG PKGV + H L+
Sbjct: 3165 RLPLAQGVQVLDLDRGDENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHS-ALSN 3223
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKG 338
M LG D L + + PL
Sbjct: 3224 HLCWMQQAYGLGVGDRVLQFTT------------FSFDVFVEELFWPL------------ 3259
Query: 339 TQGDASVLRPTVMASVP-AILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFG 397
G VL P +++ + + A + + + A R
Sbjct: 3260 MSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRC--------- 3310
Query: 398 AWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET 457
++ I+ GG L AD Q+ + G P+ YG TE
Sbjct: 3311 ----------------------TSLKRIVCGGEALPADLQQQVF--AGLPLYNLYGPTEA 3346
Query: 458 CAGGTFSEVDDSSVGR--VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG 515
T + + +G P+ ++D G L GE+ + G + G
Sbjct: 3347 TITVTHWQCVEEGKDAVPIGRPIANRACYILD----GSLEPVPVGALGELYLGGEGLARG 3402
Query: 516 YFKNEEKTKE 525
Y T E
Sbjct: 3403 YHNRPGLTAE 3412
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 31/200 (15%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
E LTY + A L G E V I + AE V L + V +
Sbjct: 4575 EKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPE 4634
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS--VEQS 222
E L Y + ++ ++ S L++L IP ++S +++
Sbjct: 4635 YPRERLAYMMEDSGAALLLTQSHLLQRL------------------PIPDGLASLALDRD 4676
Query: 223 GRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
W+ D + D ++A ++YTSGSTG PKGV ++HG+++ +
Sbjct: 4677 EDWEGFPAHDPA-----VRLHPD-----NLAYVIYTSGSTGRPKGVAVSHGSLVNHL-HA 4725
Query: 283 MTIVPDLGSKDVYLAYLPLA 302
+L D L ++ +
Sbjct: 4726 TGERYELTPDDRVLQFMSFS 4745
|
Length = 5163 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 452 YGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIK-----LIDWPEGGYLTSDSPMPRGEIV 506
YG TE T E+ D + + LP + K LI EG L GEIV
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQY-KRLPIGYAKPDSPLLIIDEEGTKLPDGEQ---GEIV 348
Query: 507 IAGPNVTVGYFKNEEKTKEVY 527
I+GP+V+ GY N EKT E +
Sbjct: 349 ISGPSVSKGYLNNPEKTAEAF 369
|
Length = 503 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 226 KITSFADVQ-ILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVL 276
+ + +++ I NP D D+ V D I++TSG+TG PKGV ++H N++
Sbjct: 117 PVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLV 169
|
Length = 503 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 45/192 (23%), Positives = 66/192 (34%), Gaps = 62/192 (32%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+Y + E FA+ LA LG K ERV E +VA G + ++++ G
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E + L E +I + EL +
Sbjct: 61 PEPIRDRLELGEAKVLIT-TPELYE----------------------------------- 84
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV---LATVSAVM 283
D + P A++ +TSG+TG PKGV+ H V AT V+
Sbjct: 85 --------------RTDPEDP-----ALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVL 125
Query: 284 TIVPDLGSKDVY 295
+ PD DVY
Sbjct: 126 DLRPD----DVY 133
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 85/365 (23%), Positives = 128/365 (35%), Gaps = 111/365 (30%)
Query: 205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
VI +DA +P V + W P +A+ +A + YTSGST +
Sbjct: 158 VIAVDA-VPDEVGAT-----WV--------------PPEAN---EDTIAYLQYTSGSTRI 194
Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT 324
P GV +TH N+ V V+ + + D +++LP H + L+ L A +G I + +
Sbjct: 195 PAGVQITHLNLPTNVLQVIDAL-EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMS 253
Query: 325 PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKK---LFD 381
P A V RP +R+ RK G S F+
Sbjct: 254 PA----------------AFVRRP---------GRWIRELARKPGGTGGTFSAAPNFAFE 288
Query: 382 LAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN 441
A AR GL K L S V+ +L+G P+S + R N
Sbjct: 289 HAAAR-------------GLPKDGEPPLDLSNVKG--------LLNGSEPVSPASMRKFN 327
Query: 442 ICLGAPIG-------QGYGLTETC----------------------AGGTFSEVDDSSVG 472
AP G YG+ E G F EV +
Sbjct: 328 EAF-APYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPN 386
Query: 473 RVGAPLPCSFIKLIDW-----PEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
V A + + + +W PE D + GEI + G N+ GY+ E+T +
Sbjct: 387 AV-AQVSAGKVGVSEWAVIVDPETASELPDGQI--GEIWLHGNNIGTGYWGKPEETAATF 443
Query: 528 KVMLD 532
+ +L
Sbjct: 444 QNILK 448
|
Length = 631 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + E + A L + G +K +RVA++ ++ +A R VV +
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 167 EEALCYSLNETEVTTVICGS 186
E L + LN++ +I GS
Sbjct: 62 EAELEHILNDSGARVLIVGS 81
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
D+A++ TSGSTG PK V +THGN+ A A+ DV +++LPL H
Sbjct: 153 DLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205
|
Length = 545 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 236 LGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-------IVPD 288
L DA A + YTSGST P GVM++H NV+A +M+ VP
Sbjct: 146 LDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPP 205
Query: 289 LGSKDVYLAYLPLAHVLELV 308
+ V ++LP H + LV
Sbjct: 206 PDTTVV--SWLPFYHDMGLV 223
|
Length = 578 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 244 ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
P+ DVA+++ TSG+TG PKG M+T + A+ A LG +L LP H
Sbjct: 29 VGEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHD---RLGGPGQWLLALPAHH 85
Query: 304 V--LELVAENLIAGV 316
+ L+++ ++IAG
Sbjct: 86 IAGLQVLVRSVIAGS 100
|
Length = 358 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 421 RIRFILSGGAP---LSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAP 477
+RF+ P A +RF G + +GYG+TET + D + G G P
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERF-----GVKLVEGYGMTETGV-PIIAPGDPAPPGSCGRP 250
Query: 478 LPCSFIKLIDWPEGGYLTSDSPMP---RGEIVI---AGPNVTVGYFKNEEKTKEV 526
P ++++D + +P GE+V+ + GY+ E T +
Sbjct: 251 RPGVEVRIVD-ED------GREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKA 298
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 23/192 (11%)
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
A L LG K +RVA+ A+T ++ A C YA L L +
Sbjct: 63 ARRLLALGLKPGDRVALIAETDGDFVEAFFAC---------QYAGLVPVPLPLPMG---- 109
Query: 180 TTVICGSKELKKLVDLSGQLDTVKH--VICMDANIPSAVSSVE-QSGRWKITSFADVQIL 236
G +E + L G L + + +I D +P + ++
Sbjct: 110 ----FGGRE-SYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLS--HAWFKA 162
Query: 237 GRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
E V P D+A + Y+SGST P+GV++TH ++A + A+ + D +
Sbjct: 163 LPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCV 222
Query: 297 AYLPLAHVLELV 308
++LP H + LV
Sbjct: 223 SWLPFYHDMGLV 234
|
Length = 579 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-06
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG-GTFS--EVDDSSVGRVGA 476
+R ++S G PL+ + + G PI GYG TET F EV S+GR
Sbjct: 197 SHLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGR--- 253
Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPRGEIVI----AGPNVTVGYFKNEEKTKEV 526
P P + +ID EG L G+I + P + GY K+ EKT+
Sbjct: 254 PAPGYRVAIID-DEGNELPPGEE---GDIAVRVKPRPPGLFRGYLKDPEKTEAT 303
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 50/215 (23%), Positives = 83/215 (38%), Gaps = 72/215 (33%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY Q +E +C F+ L L K + V I+ E +A+ C R T ++
Sbjct: 93 LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152
Query: 167 EEAL----------------CYSLNETEVTTVICGSKELKKLVDLSGQLDTVK--HVICM 208
++L LN+ +T + LK+ ++LS T K +VI +
Sbjct: 153 VKSLIDRIETITPKLIITTNYGILNDEIITF----TPNLKEAIELS----TFKPSNVITL 204
Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILG------------------REN---------P 241
N ITS +D++ + +EN P
Sbjct: 205 FRN--------------DITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVP 250
Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
V++ +P+ I+YTSG+TG K V+ ++G L
Sbjct: 251 VESSHPLY-----ILYTSGTTGNSKAVVRSNGPHL 280
|
Length = 647 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 47/216 (21%), Positives = 73/216 (33%), Gaps = 26/216 (12%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
TY + + A+ L LG + VA E AL G I L
Sbjct: 59 WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGG-EAAGIANPINPLLE 117
Query: 167 EEALCYSLNETEVTTVICGSKELK-----KLVDLSGQLDTVKHVICMDAN------IPSA 215
E + L ++ K+ ++ L ++ V+ +D A
Sbjct: 118 PEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLA 177
Query: 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGN 274
V + + +I F + + + P+ DVA +T G+TG+PK THGN
Sbjct: 178 VPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGN 237
Query: 275 ------VLATVSAVMTIVPDLGSKDVYLAYLPLAHV 304
+ A + LG D LPL HV
Sbjct: 238 EVANAWLGALLL-------GLGPGDTVFCGLPLFHV 266
|
Length = 632 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 48/220 (21%), Positives = 76/220 (34%), Gaps = 55/220 (25%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
T+ + E A+ G++ + VA+F + R E+ G + V I ++L
Sbjct: 4 WTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLR 63
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E+L + + ++ +I +L L T PS
Sbjct: 64 LESLLHCITVSKAKALI---------FNLLDPLLTQSSTE-----PPSQD---------- 99
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL---ATVSAVM 283
V+ D +YTSG+TGLPK ++ H A
Sbjct: 100 --------------DVNFR-----DKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAF 140
Query: 284 TIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG 323
+ P+ DV LPL H A I GVG A+ +G
Sbjct: 141 GMRPE----DVVYDCLPLYH----SAGG-IMGVGQALLHG 171
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 452 YGLTETCAGGTF---SEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIV 506
YGLTE T+ E+D S+G+ +P + ++D +G +P GE+V
Sbjct: 150 YGLTE-AFRSTYLPPEELDRRPDSIGK---AIPNVELWVVD-EDGNRC---APGEVGELV 201
Query: 507 IAGPNVTVGYFKNEEKTKEVYK 528
G NV GY+ + E T E +
Sbjct: 202 HRGANVMKGYWNDPEATAERLR 223
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 17/123 (13%)
Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA---GGTFSE 465
L FS ++ +GG G A A +R++ + G + +GYGLTE C+ +
Sbjct: 322 LDFSSLKLSVGG-------GMAVQQAVAERWVKLT-GQYLLEGYGLTE-CSPLVSVNPYD 372
Query: 466 VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525
+D S G +G P+P + IKL+D +G + P GE+ + GP V +GY++ E T E
Sbjct: 373 LDYYS-GSIGLPVPSTEIKLVD-DDGNEVPPGEP---GELWVKGPQVMLGYWQRPEATDE 427
Query: 526 VYK 528
V K
Sbjct: 428 VIK 430
|
Length = 560 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE----TCAGGTFSEVDDSSVGRVGA 476
R+R + SGG L + + LG + + YG TE S+G+
Sbjct: 208 RLRAVASGGESLGEELLEWARDELGLTVNEFYGQTEANLVVGNCAALGPARPGSMGK--- 264
Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN--VTVGYFKNEEKTKEVYK 528
P+P + ++D G + P GEI + P+ + +GY+ N E T +
Sbjct: 265 PVPGHEVAVVD-DAGRPV---PPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFA 314
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 16/216 (7%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFA-DTRAEWFV-ALQGCFRRNVTVVTIYAS 164
LTY + E A GL LG + + VA+ A + R FV AL + ++ +
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHR--GFVLALYAAGKVGARIILLNTG 132
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
L V ++ + L L L ++ + + S+ E
Sbjct: 133 FSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDE---- 188
Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284
+ D+ P+ P VI+ TSG+TG PKG + LA ++ +++
Sbjct: 189 ----TLDDLIAGSSTAPLPK--PPKPGGIVIL-TSGTTGTPKGAPRPEPSPLAPLAGLLS 241
Query: 285 IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAI 320
VP + + L P+ H L +GS +
Sbjct: 242 RVP-FRAGETTLLPAPMFHATGWAHLTLAMALGSTV 276
|
Length = 549 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 253 AVIMYTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
A + YTSG+TG PKGV+ +H NVL + A + D L +PL H
Sbjct: 180 AGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFH 231
|
Length = 542 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 106 WLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASL 165
LTYG+ A L LG +RVA+ A AE+ V +R V + S
Sbjct: 11 SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70
Query: 166 GEEALCYSLNETEVTTVI 183
L Y L++++ + ++
Sbjct: 71 PAAELAYILSDSQPSLLV 88
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 37/252 (14%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
++ L + + GD +++SR E G+ TY
Sbjct: 11 LISSLIAHAARHAGDT------EIVSRRVE-------------GDIHRYTYRDCERRAKQ 51
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
A LA LG + +RV A A G TI L E + Y +N E
Sbjct: 52 LAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAE 111
Query: 179 VTTVICGSKELKKLVD-LSGQLDTVKHVICM--DANIPSAVSSVEQSGRWKITSFADVQI 235
+ LVD L+ Q VK + M A++P+ S + + +
Sbjct: 112 -DRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPA--GSTP------LLCYET--L 160
Query: 236 LGRENPVDADYPV--SADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSK 292
+G ++ D D+P + + YTSG+TG PKG + +H VL A + L ++
Sbjct: 161 VGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSAR 219
Query: 293 DVYLAYLPLAHV 304
D L +P+ HV
Sbjct: 220 DAVLPVVPMFHV 231
|
Length = 539 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 26/177 (14%)
Query: 99 LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTV 158
L GE E L Y + A L + G + V + + E VAL +
Sbjct: 530 LAFGE-ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAY 588
Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
V + E L Y L ++ V ++ S +KL L+ + V+ +D P+A
Sbjct: 589 VPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL-PLAAGVQ----VLDLDR--PAA--- 638
Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV 275
G + ENP P ++A ++YTSGSTG PKG H +
Sbjct: 639 -WLEGYSE------------ENPGTELNP--ENLAYVIYTSGSTGKPKGAGNRHRAL 680
|
Length = 5163 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 446 APIGQGYGLTETCAGGTFSEVDDSSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPM 500
A I YG TE T ++ + + +G P + ++D EG L
Sbjct: 285 ATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPL---PEG 340
Query: 501 PRGEIVIAGPNVTVGYFKNEEKTKEVY 527
+GEIVI GP+V+ GY N EKT E +
Sbjct: 341 EKGEIVIVGPSVSKGYLNNPEKTAEAF 367
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 56/275 (20%), Positives = 103/275 (37%), Gaps = 38/275 (13%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
E ++Y Q + A L G + + VA+ +D E V L R + +
Sbjct: 23 EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT----- 77
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
A+ + L E ++ S +++ S LD + + D + +
Sbjct: 78 ----AINHHLTAPEADYIVGDSG--ARVLVASAALDGLAAKVGADLPLRLSFGG------ 125
Query: 225 WKITSFADVQ-ILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVM--MTHGNVLATVSA 281
+I F + L P + P A V++Y+SG+TG PKG+ + +V A
Sbjct: 126 -EIDGFGSFEAALAGAGPRLTEQPCGA---VMLYSSGTTGFPKGIQPDLPGRDVDAPGDP 181
Query: 282 VMTIVP---DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKG 338
++ I D+ D+Y + P+ H L +++ +G + T +++
Sbjct: 182 IVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVER- 240
Query: 339 TQGDASVLRPTVMASVPAILDR---VRDGVRKKVD 370
R TV VP + R + VR + D
Sbjct: 241 -------YRITVTQMVPTMFVRLLKLDADVRTRYD 268
|
Length = 501 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 243 DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA----VMTIVPDLGSKDVYLAY 298
D + DVA+I +TSG+TGLPKG M H ++LA A V+ PD DV++
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPD----DVFIGS 195
Query: 299 LPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVP--- 355
PLA L L G L T + K Q R T++ + P
Sbjct: 196 PPLAFTFGLGGLVLFP---LRFGASAVLLEQATPPLLLKAIQE----HRATILFTAPTAY 248
Query: 356 -AILDRVRD----GVRKKVDAKGGLSKKLFDLAYARR-LSAING 393
A+L +V+ +RK V A L K++ Y R L I+G
Sbjct: 249 RAMLIKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLKIIDG 292
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 51/204 (25%), Positives = 73/204 (35%), Gaps = 27/204 (13%)
Query: 99 LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTV 158
L GE E LTYG+ A L LG E V I + E V L +
Sbjct: 1593 LVFGEQE-LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAY 1651
Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
V + E L Y + ++ + ++ S +L G S V
Sbjct: 1652 VPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGL--------------RSLV-- 1695
Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
++Q W NP P ++A ++YTSGSTG PKG HG ++
Sbjct: 1696 LDQEDDWLEGY-------SDSNPAVNLAP--QNLAYVIYTSGSTGRPKGAGNRHGALVNR 1746
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLA 302
+ A L + DV L + A
Sbjct: 1747 LCA-TQEAYQLSAADVVLQFTSFA 1769
|
Length = 3956 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 17/77 (22%), Positives = 31/77 (40%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY + + FA+ L LG +RV + E A C + V + L
Sbjct: 11 LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70
Query: 167 EEALCYSLNETEVTTVI 183
+ L + L+++ ++
Sbjct: 71 PQDLEHILDDSGAALLV 87
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 231 ADVQILGREN-PVDADYPVS-ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288
AD + L + + V+ D+ +MYTSG+T PKGVM ++GN+ S I
Sbjct: 128 ADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNL-HWKSIDHVIALG 186
Query: 289 LGSKDVYLAYLPLAHV 304
L + + L PL HV
Sbjct: 187 LTASERLLVVGPLYHV 202
|
Length = 497 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 253 AVIMYTSGSTGLPKGVMMTHGNVLAT---VSAVMTIVPDLGSKDVYLAYLPLAHV 304
A + TSGSTGLPK + T LA+ V ++M ++D +L LPL HV
Sbjct: 138 ATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM----PFTAQDSWLLSLPLFHV 188
|
Length = 458 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 26/206 (12%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWF-----VALQGCFRRNVTVVTIY 162
T+ + + AS LA+ G + + VA+ V + G + T+
Sbjct: 45 TWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGA-----VLNTLN 99
Query: 163 ASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQS 222
L ++ + L E +I + E ++ + L + +D + P E
Sbjct: 100 TRLDAASIAFMLRHGEAKVLIVDT-EFAEVAREALALLPGPKPLVIDVDDP------EYP 152
Query: 223 GRWKITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH-GNVLA 277
G I + L +P D + + AD +A + YTSG+TG PKGV+ H G L
Sbjct: 153 GGRFIGALDYEAFLASGDP-DFAWTLPADEWDAIA-LNYTSGTTGNPKGVVYHHRGAYLN 210
Query: 278 TVSAVMTIVPDLGSKDVYLAYLPLAH 303
+S ++ + VYL LP+ H
Sbjct: 211 ALSNILAW--GMPKHPVYLWTLPMFH 234
|
Length = 545 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 231 ADVQILGRENPVDADYPVSA---------DVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
V L + +D PV A A+ +YTSG+TGLPK ++H VL +
Sbjct: 114 EGVISLLAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQ--CS 171
Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
M + + + DV LPL H + G+ IG G L L
Sbjct: 172 GMLSLCGVTADDVVYTTLPLYHS-----SGALLGIVGCIGLGATLVL 213
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
Query: 196 SGQLDTVKHVICMDANIPSAV-SSVEQSGRWKITSFADVQILG----RENPVDADYPVSA 250
+G D ++ DA PS + ++ +Q R FADV L
Sbjct: 540 TGYPDDRLKMMLEDAR-PSLLITTADQLPR-----FADVPDLTSLCYNAPLAPQGAAPLQ 593
Query: 251 -----DVAVIMYTSGSTGLPKGVMMTH 272
A I++TSGSTG PKGVM+
Sbjct: 594 LSQPHHTAYIIFTSGSTGRPKGVMVGQ 620
|
Length = 1296 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSV-----GRVGA 476
+R + GG+ A RFI G Q YGL+ET DD S+ G VG
Sbjct: 288 LRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGR 346
Query: 477 PLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEV 526
P P + L +G T+ P G + I P +GY+ N E+T EV
Sbjct: 347 PYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEV 398
|
Length = 540 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 64/292 (21%), Positives = 106/292 (36%), Gaps = 84/292 (28%)
Query: 244 ADY-PVSADV-AVIMYTSGSTGLPKGVMMTHGNVLATVSAV----MTIVP-DLG--SKDV 294
Y P+ D A YTSG+TG PK + H + L V A+ + + P D G S +
Sbjct: 137 GGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARM 196
Query: 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASV---LRPTVM 351
Y AY G+G+++ + + + + A + P+V+
Sbjct: 197 YFAY----------------GLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVL 240
Query: 352 ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVF 411
VP RV +D+ S F
Sbjct: 241 YGVPNFFARV-------IDSCSPDS----------------------------------F 259
Query: 412 SKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF--SEVDDS 469
+R + + +G A +R + G PI G G TE G TF + VD+
Sbjct: 260 RSLRCV-------VSAGEALELGLAERLMEFFGGIPILDGIGSTEV--GQTFVSNRVDEW 310
Query: 470 SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521
+G +G LP I+++ P+G + P G++ + GP + GY+ +
Sbjct: 311 RLGTLGRVLPPYEIRVVA-PDGT---TAGPGVEGDLWVRGPAIAKGYWNRPD 358
|
Length = 705 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 418 LGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS----EVDDSSVG- 472
L +R + +G P A ++ LG + YGLTET T E D
Sbjct: 280 LPRPVRVMTAGAPPPPAVIKKMEE--LGFEVTHVYGLTETYGPITVCEWKPEWDALPAEE 337
Query: 473 ------RVGAPLPCSF-IKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVGYFKNE 520
R G + ++D PE +PR GEIV+ G V GY+KN
Sbjct: 338 RARLKARQGVRYVGLEEVDVVD-PETM-----KDVPRDGKTIGEIVMRGNTVMKGYYKNP 391
Query: 521 EKTKEVYK 528
E T+E +
Sbjct: 392 EATEEAFA 399
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 249 SADVAVIMYTSGSTGLPKGVMMTH 272
S D A+++YTSG+TG PKG + H
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGH 110
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 6e-04
Identities = 48/212 (22%), Positives = 77/212 (36%), Gaps = 45/212 (21%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LTY + + A+ L G + ++RVA+ A + +AL R + L
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ + E+T VI +DA + A+
Sbjct: 89 PAEIAELIKRGEMTAA----------------------VIAVDAQVMDAI---------- 116
Query: 227 ITSFADVQILGRENPVDADYPVSA------------DVAVIMYTSGSTGLPKGVMMTHGN 274
S + V++L + V P SA A + YTSG+TGLPKG ++
Sbjct: 117 FQSGSGVRVLALGDLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRA 176
Query: 275 VLATVSAVMTIVP-DLGSKDVYLAYLPLAHVL 305
+ V + T G +V L +PL HV+
Sbjct: 177 AESRVLFMSTQAGLRHGRHNVVLGLMPLYHVI 208
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 28/225 (12%)
Query: 119 FASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
A L +LG ++RV AE L + L + + + +N
Sbjct: 51 LAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHA 110
Query: 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
E ++ + ++L ++ + V+ V+ + + + ++ K+ S+ + + G
Sbjct: 111 EDEVIVADPRLAEQLGEILKECPCVRAVVFIGPS-DADSAAAHMPEGIKVYSY-EALLDG 168
Query: 238 RENPVDADYPV--SADVAVIMYTSGSTGLPKGVMMTHG-------NVLATVSAVMTIVPD 288
R D+P A I Y++G+TG PKGV+ +H ++ T S +T
Sbjct: 169 R--STVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVT---- 222
Query: 289 LGSKDVYLAYLPLAHVLELVAENLIAGVG-SAIGYGTPLTLTDTS 332
+ +L +P+ HVL GV +A GTPL
Sbjct: 223 --HGESFLCCVPIYHVLSW-------GVPLAAFMSGTPLVFPGPD 258
|
Length = 576 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 451 GYGLTETCAGGTFSEVDDS------SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504
YG+TET + D +VGR P +K++D P+G + GE
Sbjct: 349 AYGMTETSPVSLQTTAADDLERRVETVGRT---QPHLEVKVVD-PDGATVPRGE---IGE 401
Query: 505 IVIAGPNVTVGYFKNEEKTKEV 526
+ G +V GY+ N E T E
Sbjct: 402 LCTRGYSVMKGYWNNPEATAES 423
|
Length = 558 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G E T+GQ + A+ L +LG ++ +RV ++ E +A ++ V +
Sbjct: 2 GTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPL 61
Query: 162 YASLGEEALCYSLNETEVTTVIC-GSKELKKLVDLSG 197
G +A+ + L ++ ++ GS + L+ SG
Sbjct: 62 SVLFGPDAVEHRLRDSGARVLVTDGSDDPAILIYTSG 98
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 28/214 (13%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
GE +++ + + A+ L LG K +RVA + E +A+ ++ I
Sbjct: 82 GERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLAT----ASIGAI 137
Query: 162 YAS----LGEEALCYSLNETEVTTVIC------GSKE---LKKLVDLSGQLDTVKHVICM 208
++S G EA+ + E + KE +K+ ++ L +++ V+ +
Sbjct: 138 WSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVV 197
Query: 209 D---ANIPSAVSSVEQSGRWKITSFADVQILGREN-PVDADYPVSADVAVIMYTSGSTGL 264
++ A S + S A + E + D+P+ I+Y+SG+TGL
Sbjct: 198 PYLSSDAQPAALKF--SALTLLWSLAGDRAAPLEFERLPFDHPL-----WILYSSGTTGL 250
Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY 298
PK ++ G L + DL D Y
Sbjct: 251 PKCIVHGAGGTLLQHLKEHGLHCDLRPGDRLFYY 284
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 18/205 (8%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVT-VVT 160
G +W +Y + + N A+GL +LG K+ + + AE+++ + V V+
Sbjct: 45 GNRQW-SYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLA 103
Query: 161 IYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA--NIPSAVSS 218
+++ E Y+ +I + L D + QL + NI A +
Sbjct: 104 LFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQL-----QSKLPTLRNIIVAGQT 158
Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
E + S A+ PV S +VA + GSTG PK + TH + +
Sbjct: 159 GEAELFLWLESPAE--------PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYS 210
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAH 303
V + I L + YL LP AH
Sbjct: 211 VRRSVEIC-WLTQQTRYLCALPAAH 234
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 246 YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVL 305
P S AV+ T+GSTG P+ +++ G VL+ + + V + DV ++LPL H +
Sbjct: 148 PPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDM 207
Query: 306 ELVAENLIAGVGSAIGYGTPLTLTDTSS 333
L + +A+ G PL L T++
Sbjct: 208 -----GLAFLLTAALA-GAPLWLAPTTA 229
|
Length = 525 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 44/217 (20%), Positives = 79/217 (36%), Gaps = 18/217 (8%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
E +TY + E A LG K+ + VAIF + + R + + +
Sbjct: 23 EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSH 82
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
L Y ++++ +I + +L L Q V+H + + +
Sbjct: 83 LTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRH--RLVLDGDGELE------- 133
Query: 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVM--MTHGNVLATVSAV 282
+A+ P+ D + D ++Y+SG+TG PKG+ + +
Sbjct: 134 -GFVGYAEAVAGLPATPIA-DESLGTD---MLYSSGTTGRPKGIKRPLPEQPPDTPLPLT 188
Query: 283 MTIVPDLG--SKDVYLAYLPLAHVLELVAENLIAGVG 317
+ G S VYL+ PL H A L+ +G
Sbjct: 189 AFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLG 225
|
Length = 511 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 191 KLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN-----PVDAD 245
K+ +L L +++HV+ +P + + + D PV D
Sbjct: 208 KVAELRAALPSLEHVVV----VPYLGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPFD 263
Query: 246 YPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
+P+ I+Y+SG+TGLPK ++ HG +L
Sbjct: 264 HPL-----WILYSSGTTGLPKCIVHGHGGIL 289
|
Length = 655 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 411 FSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DS 469
FS ++ LGG G A + +R+ + G + + YGLTET + +
Sbjct: 328 FSSLKMTLGG-------GMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKE 379
Query: 470 SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEI---VIAGPNVTVGYFKNEEKTKEV 526
G +G P+P + + D + + + GEI I GP V GY+K E+T +V
Sbjct: 380 YNGSIGLPIPSTDACIKD-------DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKV 432
|
Length = 560 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 23/48 (47%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 257 YTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
YTSG+T PKGV+++H G L+T+SA+ I ++G+ VYL LP+ H
Sbjct: 193 YTSGTTADPKGVVISHRGAYLSTLSAI--IGWEMGTCPVYLWTLPMFH 238
|
Length = 579 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 14/67 (20%)
Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-----IVPDLGSKDVYL 296
VD D P +TSG+TG PK ++THG ++ V+T ++P +D L
Sbjct: 160 VDHDDP-----CWFFFTSGTTGRPKAAVLTHG----QMAFVITNHLADLMPGTTEQDASL 210
Query: 297 AYLPLAH 303
PL+H
Sbjct: 211 VVAPLSH 217
|
Length = 528 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 420 GRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET--CAGGTFSEVDDSSVGRVGAP 477
++R S G PL+ + R+ LG I YG TET G + + G +G P
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLP 264
Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVGYFKNEEKTKE 525
LP I ++D + G +D + I +A GY+ + EKT E
Sbjct: 265 LPGYRIAVLD--DDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAE 312
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVL 276
++A ++YTSGSTGLPKGVM+ +L
Sbjct: 3870 NLAYVIYTSGSTGLPKGVMVEQRGML 3895
|
Length = 4334 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY--L 299
VD D P A ++YTSG+TGLPKG ++ L T + + DL + Y +
Sbjct: 84 VDPDDP-----AALIYTSGTTGLPKGCAISWRRTLVTSNPLSH---DLNLQFPDRTYTCM 135
Query: 300 PLAH 303
PL H
Sbjct: 136 PLYH 139
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 422 IRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAG-GTFSEVDDSSVGRVGAPLP 479
+R+ + G PL+ + F G + +G+G TET TF ++ G +G P P
Sbjct: 303 LRYCTTAGEPLNPEVFNTFKEKT-GIKLMEGFGQTETTLTIATFPWMEPKP-GSMGKPSP 360
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVI-----AGPNVTVGYFKNEEKTKEVYK 528
I +ID P+G S GEIVI + +GY+++ E+T EV+
Sbjct: 361 GYDIDIID-PDG---KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH 410
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
R+ D+ ++++TSG++G PK V TH V A+ ++ LG DV
Sbjct: 140 RDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKV-ASAGVMLAQRFGLGPDDVCYV 198
Query: 298 YLPLAH 303
+PL H
Sbjct: 199 SMPLFH 204
|
Length = 529 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
GE + T+G + A+ LG K + V + R E++ ++ + +
Sbjct: 43 GEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPA 102
Query: 162 YASLGEEALCYSLNETEVTTVIC-GSKELKKLVDLS-GQLDTVKHVICMDANIPSAVSSV 219
L + + Y + + ++C G + + +D + + + ++ + +P
Sbjct: 103 THMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDF 162
Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH 272
++ F E P D + D+ ++ +TSG+TG+PK M+ H
Sbjct: 163 DKEIENASPDF--------ERPTGNDATCNDDILLVYFTSGTTGMPK--MVEH 205
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 541 | |||
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.89 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.88 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.88 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.81 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.62 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.61 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.47 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 98.9 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.05 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 93.62 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 87.13 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 86.16 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 81.73 |
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-92 Score=690.94 Aligned_cols=497 Identities=55% Similarity=0.855 Sum_probs=470.1
Q ss_pred CCCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHH
Q 009160 32 DVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQ 111 (541)
Q Consensus 32 ~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~e 111 (541)
.++.+||+..+.++ +...++++..|++++|++.++++.+++++++|++++.++|.++||++|+++++|+|+|+||.|
T Consensus 18 ~e~~p~Rnv~~~~~---L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~e 94 (678)
T KOG1180|consen 18 HETAPYRNVRSFDG---LVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNE 94 (678)
T ss_pred CCCccccccccCCC---ccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHH
Confidence 34889999988777 888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCE-EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchh
Q 009160 112 AFETICNFASGLAQLGHKKEER-VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK 190 (541)
Q Consensus 112 l~~~~~~la~~L~~~gv~~g~~-V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 190 (541)
+.+++.++|++|.+.|+++++. |+|+++.+.+|+++++||+++|+++|.+|.+++.+.+.|.|++++++.+||+.++++
T Consensus 95 v~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~ 174 (678)
T KOG1180|consen 95 VYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLP 174 (678)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHH
Confidence 9999999999999999998777 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccEEEEecCCCcc----ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcc
Q 009160 191 KLVDLSGQLDTVKHVICMDANIPS----AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPK 266 (541)
Q Consensus 191 ~~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 266 (541)
++....+.++.+++||++++.+.. ..... ..+.+.+++++++++.++....++.++.|+|+|+|||||||||.||
T Consensus 175 kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i-~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PK 253 (678)
T KOG1180|consen 175 KLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSI-VRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPK 253 (678)
T ss_pred HHHHHHhccCceeEEEEecCCCCccchhhhhhh-ccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCc
Confidence 998888999999999999964322 22222 2257899999999999999987788889999999999999999999
Q ss_pred EEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccc
Q 009160 267 GVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346 (541)
Q Consensus 267 gV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~ 346 (541)
|||++|.|+++.+.......+.+.+.|+++.++||+|++++.+.+.+++.|+.+++.+|.++.+.++++.+++.+++..+
T Consensus 254 GVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~l 333 (678)
T KOG1180|consen 254 GVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTEL 333 (678)
T ss_pred eEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccc
Confidence 99999999999999998887789999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEE
Q 009160 347 RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426 (541)
Q Consensus 347 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~ 426 (541)
|||+|.+||++|+++.+.+..+++..+.+.+.||..++.+|++..+ .++..+++||.++|+++|..+|++||+++
T Consensus 334 kPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~-----~~g~~s~~ld~lVFkKIr~~lGG~lR~~L 408 (678)
T KOG1180|consen 334 KPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIE-----RNGPGSPLLDALVFKKIRALLGGNLRYIL 408 (678)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh-----ccCCchhhHHHHHHHHHHHHhCCceEEEE
Confidence 9999999999999999999999999999999999999999999887 35667899999999999999999999999
Q ss_pred EccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEE
Q 009160 427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIV 506 (541)
Q Consensus 427 ~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~ 506 (541)
+||+||+++.++|+..+++|++.++||.||+++.++...+.+...|.+|.|+++++++++|++|++|.+.+.+ ++|||+
T Consensus 409 sGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P-PrGEI~ 487 (678)
T KOG1180|consen 409 SGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP-PRGEIL 487 (678)
T ss_pred eCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC-CCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997777 899999
Q ss_pred EccCCcccccCCCchhhHhhhccCCCc--eEEccc
Q 009160 507 IAGPNVTVGYFKNEEKTKEVYKVMLDR--FMLMVA 539 (541)
Q Consensus 507 v~g~~v~~GY~~~~~~t~~~f~~d~dG--w~~~~~ 539 (541)
|+|+++..|||+||++|++.| ..+|| ||+|+|
T Consensus 488 i~G~~vt~gY~kn~ekT~e~f-t~~~G~~WF~TGD 521 (678)
T KOG1180|consen 488 IGGPNVTMGYYKNEEKTKEDF-TVEDGQRWFRTGD 521 (678)
T ss_pred ecCCccChhhhCChhhhhhhc-eecCCcEEEeccc
Confidence 999999999999999999999 33699 999997
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-85 Score=671.97 Aligned_cols=470 Identities=37% Similarity=0.637 Sum_probs=419.3
Q ss_pred CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHH
Q 009160 34 GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113 (541)
Q Consensus 34 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~ 113 (541)
+..||+...+. ..+....+++..|+++.|++.+..+|+.++++++... ++ .++|+|+||+|+.
T Consensus 53 ~~~~~s~~~~~--~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~--------~~-------~~~~~~~tY~q~~ 115 (691)
T KOG1256|consen 53 DGSRRSAVLPR--EELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIV--------DG-------KGPYEWLTYKQVY 115 (691)
T ss_pred CCceeeeeccC--CCCCCCCCCCcccHHHHhhcchhccCCCCceeEEecc--------cC-------CCCcEEEEHHHHH
Confidence 57788876653 1244556678999999999999999999999998533 33 3789999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEEC-ccchhHH
Q 009160 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG-SKELKKL 192 (541)
Q Consensus 114 ~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~ 192 (541)
+++.++|.+|+.+|+++++.|||++.|++||+++.+||..+|.+.||||++++++++.+|++++++.++|+| ++..+.+
T Consensus 116 e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~l 195 (691)
T KOG1256|consen 116 ERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKL 195 (691)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 5556667
Q ss_pred HHhhc--CCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCC-CCCCCCCeEEEEeccCCCCCccEEE
Q 009160 193 VDLSG--QLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDA-DYPVSADVAVIMYTSGSTGLPKGVM 269 (541)
Q Consensus 193 ~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~i~~TSGTTG~PKgV~ 269 (541)
.+... .++.+|.+|.+++.....+..... .++.+++|+++++.|+.....+ .++.|||+|.|+|||||||.|||||
T Consensus 196 l~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~-~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVM 274 (691)
T KOG1256|consen 196 LEIKENDSLPSLKAIIQLDEPSDELKEKAEN-NGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVM 274 (691)
T ss_pred HhhcccccCccceeEEEecCCchhhhhhhhc-CCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEE
Confidence 66655 478899999999988776655555 5799999999999998777666 5999999999999999999999999
Q ss_pred echHHHHHHHHHHH---hhC--CCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe--CCcccccccchhhhcCcccc
Q 009160 270 MTHGNVLATVSAVM---TIV--PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGD 342 (541)
Q Consensus 270 ~th~~l~~~~~~~~---~~~--~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~ 342 (541)
+||+|+++.+.... ... .....+|+++++|||+|++++......++.|+.++| +|+..+.++
T Consensus 275 LTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~d----------- 343 (691)
T KOG1256|consen 275 LTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDD----------- 343 (691)
T ss_pred EeccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHH-----------
Confidence 99999999765422 222 123347999999999999999998888899999999 899899998
Q ss_pred cccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHH-hhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCc
Q 009160 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRL-SAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR 421 (541)
Q Consensus 343 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 421 (541)
+++.+||++.+||++|+++.+.++++....+++++++|++|+.+++ ..+..|-... .+++||+++|+|+++.+|++
T Consensus 344 lk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~---~~~~~D~lVf~KI~~~LGg~ 420 (691)
T KOG1256|consen 344 LKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRS---RDRFADKLVFHKIKQSLGGN 420 (691)
T ss_pred HHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcc---cchHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999988999999999999999 5555222211 57899999999999999999
Q ss_pred eEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCC
Q 009160 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP 501 (541)
Q Consensus 422 lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~ 501 (541)
+|.+++|++|+++++.+|++..+||+|+++||+|||++.++...+.+...+++|.|+|++++|++|+||++|.+ .+.
T Consensus 421 vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a---~~~ 497 (691)
T KOG1256|consen 421 VRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDA---DGS 497 (691)
T ss_pred eeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCc---CCC
Confidence 99999999999999999999999999999999999998888888877788999999999999999999999987 556
Q ss_pred ccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 502 RGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 502 ~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
.|||||||++||+|||+||++|+++| |+||||||+|.
T Consensus 498 ~GEIcirG~~Vf~GYyK~p~~T~e~i--deDGWLhTGDi 534 (691)
T KOG1256|consen 498 KGEICVRGPNVFMGYYKDPEKTAEAI--DEDGWLHTGDI 534 (691)
T ss_pred cceEEEecchhceeccCChHHHhhhh--ccccccccccc
Confidence 89999999999999999999999999 99999999984
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-76 Score=646.86 Aligned_cols=536 Identities=74% Similarity=1.202 Sum_probs=457.9
Q ss_pred CCceeeeeeeeeeEEEEeeccccccccccccCC----CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCc
Q 009160 1 MSAYIVGVLVPLVFTLLLRNSKKEKKRGIPVDV----GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYL 76 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~a 76 (541)
|.+|.++.+.|+++.....+.++.+.+.++++. +..||+...+ + +....+++..|+.++|+++++++||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~---~~~~~~~~~~t~~~l~~~~~~~~pd~~a 76 (696)
T PLN02387 1 MGAYIVGVLVPLLLTLLLRGSKKGKKRGVPVDVGGEPGYAIRNARFP-E---LVETPWEGATTLAALFEQSCKKYSDKRL 76 (696)
T ss_pred CceEEEEecchhheeechhcccccccceecCCCCCCCCCceecCccc-c---ccccCCCCCCCHHHHHHHHHHHCCCCce
Confidence 678999999999999988888887778888774 3478887643 3 5555678889999999999999999999
Q ss_pred EEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCc
Q 009160 77 LGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV 156 (541)
Q Consensus 77 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~ 156 (541)
++++.+...+.+.+++|+.|+..+.++|+++||+|+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+
T Consensus 77 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~ 156 (696)
T PLN02387 77 LGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNI 156 (696)
T ss_pred EEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 98875443333444577777777889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhc
Q 009160 157 TVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236 (541)
Q Consensus 157 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (541)
++||++++++++++.+++++++++++|++.+..+.+.+....++.++.+|++++..............+.+.+|+++...
T Consensus 157 v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (696)
T PLN02387 157 TVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKL 236 (696)
T ss_pred eEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHh
Confidence 99999999999999999999999999999888887777777778889999987653221110001134567789998877
Q ss_pred ccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhc
Q 009160 237 GRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGV 316 (541)
Q Consensus 237 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~ 316 (541)
+...+.+.....++|+++|+|||||||.||||++||+|+++.+......+..+.++|++++++|++|++++...+.+++.
T Consensus 237 ~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~ 316 (696)
T PLN02387 237 GKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAV 316 (696)
T ss_pred hccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHh
Confidence 65544444456789999999999999999999999999999888776554367889999999999999999988788999
Q ss_pred CceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCC
Q 009160 317 GSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWF 396 (541)
Q Consensus 317 G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 396 (541)
|++++++++..+.+........+..++++++||+++++|++++++.+.+..+....+.+.+.+|++++..++..+...|+
T Consensus 317 g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~ 396 (696)
T PLN02387 317 GAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWF 396 (696)
T ss_pred CCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCc
Confidence 99999988777666543334455666999999999999999999999888888888899999999999999988776677
Q ss_pred CCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCC
Q 009160 397 GAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGA 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 476 (541)
+..+..++++|+++|+++++.+|+++|.+++||+|+++++.++++..+|++++++||+||+++.++.....+...+++|+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~ 476 (696)
T PLN02387 397 GAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGP 476 (696)
T ss_pred ccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCC
Confidence 66778889999999999999999999999999999999999999988999999999999998877776666667799999
Q ss_pred CcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCc--eEEcccc
Q 009160 477 PLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDR--FMLMVAL 540 (541)
Q Consensus 477 p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dG--w~~~~~~ 540 (541)
|+|+++++|+|++++++...+.+++.|||+|+||++|+|||+||++|+++|..|+|| ||+|+|+
T Consensus 477 p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDi 542 (696)
T PLN02387 477 PLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDI 542 (696)
T ss_pred CCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCce
Confidence 999999999998888887655667789999999999999999999999998446667 9999985
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-72 Score=580.19 Aligned_cols=436 Identities=36% Similarity=0.533 Sum_probs=359.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
....++..++.+.++.+|+..++.... .+.++.+||+|+.+++.++|++|.+.|+.+||+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~a~~~~~-------------------~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrv 73 (613)
T COG1022 13 AEIHTLPKRLAERVKDRPDGVALMYKE-------------------LGGWEAITYRELYERVRALASGLLSLGIPAGDRV 73 (613)
T ss_pred hhcccHHHHHHHHhhcCCcceeEeeec-------------------CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 345689999999999999988887542 4567899999999999999999999999779999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-hHHHHhhcCCCCccEEEEecCCCc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-KKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
+|++.|++||+++.+||+.+|++.||++++.+++++.++|++++++++|++.... +.+..+...++.+..++...+...
T Consensus 74 ai~a~nr~eW~i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (613)
T COG1022 74 AIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVR 153 (613)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999998544 444444443332222221111000
Q ss_pred cc----cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 214 SA----VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 214 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
.. ....+.....+...+ .+. .........+..+||+|+|+|||||||.|||||+||+|+++++....+..+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~ 230 (613)
T COG1022 154 EAVEAKALVLEVFPDEGISLF-LID--SAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPI 230 (613)
T ss_pred hccchhhccccccccccchhh-hhc--ccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCC
Confidence 00 000000000111111 111 11111122567899999999999999999999999999999999999988238
Q ss_pred CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
+++|+++++||++|++++.. ....++.|+++++ .++.++.++ +++++||.+++||++|+.+.+.+.+
T Consensus 231 ~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~d-----------l~~~rPt~m~~VPRvwE~i~~~I~~ 299 (613)
T COG1022 231 GPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLED-----------LKEVRPTVMIGVPRVWEKVYKGIME 299 (613)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHH-----------HHHhCCeEEeechHHHHHHHHHHHH
Confidence 89999999999999999997 5566777777777 999999999 9999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCC-chhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAW-GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~ 446 (541)
++...+..++++|+++++.+.........+.. .......|+++|+|+|+.+|+++|++++||+++++++..+|+.. |+
T Consensus 300 kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi 378 (613)
T COG1022 300 KVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GI 378 (613)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CC
Confidence 99999999999999999876543332111221 22334589999999999999999999999999999999999987 89
Q ss_pred cceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhh
Q 009160 447 PIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~ 526 (541)
++.++||+||++++++...++..+.+++|.|+|++|+||+| .|||+||||+||+|||+||++|+++
T Consensus 379 ~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d--------------~GEilVRG~~Vm~GYyk~pe~Taea 444 (613)
T COG1022 379 PILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD--------------DGEILVRGPNVMKGYYKNPEATAEA 444 (613)
T ss_pred CeEEEecccccccceEEccccCcccCCcCCcCCCceEEEcc--------------CceEEEecchhcchhcCChHHHhhh
Confidence 99999999999999999999999999999999999999998 4999999999999999999999999
Q ss_pred hccCCCceEEcccc
Q 009160 527 YKVMLDRFMLMVAL 540 (541)
Q Consensus 527 f~~d~dGw~~~~~~ 540 (541)
| |+||||+|+|.
T Consensus 445 f--~~DGWf~TGDl 456 (613)
T COG1022 445 F--TEDGWFRTGDL 456 (613)
T ss_pred c--cccCCcccCce
Confidence 9 99999999985
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=583.04 Aligned_cols=458 Identities=22% Similarity=0.340 Sum_probs=379.9
Q ss_pred CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHH
Q 009160 34 GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113 (541)
Q Consensus 34 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~ 113 (541)
+.+||......+ .++....|+.++|.++++++|+++|+...+ +|. .++++||+|+.
T Consensus 43 ~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~p~~~Al~~~~----------~g~--------~~~~~Ty~el~ 98 (746)
T PTZ00342 43 SSVYCMKDHKKK------SSLYVYKHIMKLLLEKYKLNNNKIAIVEHS----------CGE--------PQNYITYGNFF 98 (746)
T ss_pred CCceecCchhhc------ccccccchHHHHHHHHHhhcCCceeEeccC----------CCC--------CceeeeHHHHH
Confidence 679997655544 445677899999999999999999997521 222 24689999999
Q ss_pred HHHHHHHHHHHhc---CCCCC-----------CEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCc
Q 009160 114 ETICNFASGLAQL---GHKKE-----------ERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179 (541)
Q Consensus 114 ~~~~~la~~L~~~---gv~~g-----------~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 179 (541)
++++++|++|.+. |+++| |+|+|+++|++||+++++||+++|++.||++++++++++.++|+++++
T Consensus 99 ~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~ 178 (746)
T PTZ00342 99 KKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKL 178 (746)
T ss_pred HHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCC
Confidence 9999999999974 99998 999999999999999999999999999999999999999999999999
Q ss_pred eEEEECccchhHHHHhhcCCCCccEEEEecCCCccc--------------------c-----------------------
Q 009160 180 TTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA--------------------V----------------------- 216 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------~----------------------- 216 (541)
+++|++.+..+.+.+....++.++.+|++++..... .
T Consensus 179 ~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (746)
T PTZ00342 179 EWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPL 258 (746)
T ss_pred CEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999888888877777788899999987632110 0
Q ss_pred --------------ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHH
Q 009160 217 --------------SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282 (541)
Q Consensus 217 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~ 282 (541)
.... ..+.....++++..... .........++|+++|+|||||||.||||++||+|+++.+...
T Consensus 259 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~ 336 (746)
T PTZ00342 259 EYDKEKLEKIKDLKEKAK-KLGISIILFDDMTKNKT-TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPL 336 (746)
T ss_pred ccchhhhhhhHHHHHHhh-cCCCEEEEHHHHHhhcc-cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHH
Confidence 0000 01223445555544321 1222344578999999999999999999999999999988765
Q ss_pred HhhC-CCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe--CCcccccccchhhhcCcccccccccceEEeecHHHHH
Q 009160 283 MTIV-PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359 (541)
Q Consensus 283 ~~~~-~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 359 (541)
.... ......|++++++|++|++++...+.+++.|+++++ .++..+.++ +++++||+++++|++|+
T Consensus 337 ~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~d-----------i~~~~pT~~~~VP~v~~ 405 (746)
T PTZ00342 337 CKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKD-----------IYNSKGNILAGVPKVFN 405 (746)
T ss_pred hhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEEEchHHHHH
Confidence 4321 012356899999999999999888888999999998 567778887 99999999999999999
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHH--hHHHHHHHhCCceEEEEEccCCCCHHHH
Q 009160 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL--VFSKVRAILGGRIRFILSGGAPLSADTQ 437 (541)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 437 (541)
+|++.+..+....+.+++++|++|+..+.+... +..+++++.+ +|+++|+.+|+++|.+++||+|+++++.
T Consensus 406 ~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~ 478 (746)
T PTZ00342 406 RIYTNIMTEINNLPPLKRFLVKKILSLRKSNNN-------GGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIA 478 (746)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhc-------CCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHH
Confidence 999998888888888999999999998877433 2245677765 7999999999999999999999999999
Q ss_pred HHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCccccc
Q 009160 438 RFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY 516 (541)
Q Consensus 438 ~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY 516 (541)
++|+..+|++++++||+||+++.++...+.+.+.+++|+|+ |+++++|+|++++.... .++.|||+|+||++|+||
T Consensus 479 ~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~---~~~~GEl~vrGp~v~~GY 555 (746)
T PTZ00342 479 EELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATD---TLPKGELLIKSDSIFSGY 555 (746)
T ss_pred HHHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCC---CCCceEEEEecCcccccc
Confidence 99999999999999999999887776666667789999998 99999999966544322 346799999999999999
Q ss_pred CCCchhhHhhhccCCCceEEcccc
Q 009160 517 FKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 517 ~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|++|+.|+++| ++||||+|+|+
T Consensus 556 ~~~pe~T~~~f--~~dGW~~TGDi 577 (746)
T PTZ00342 556 FLEKEQTKNAF--TEDGYFKTGDI 577 (746)
T ss_pred cCChhhhhhhc--CcCCcccCCcE
Confidence 99999999999 88999999985
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=568.22 Aligned_cols=472 Identities=34% Similarity=0.599 Sum_probs=392.9
Q ss_pred CCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHH
Q 009160 34 GGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113 (541)
Q Consensus 34 ~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~ 113 (541)
+.+||+...+.+..... ...+...|++++|+++++++|+++|+..+.. .++. .+.++++||+|+.
T Consensus 21 ~~~~~~~~~~~~~~~~~-~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~--------~~~~------~~~~~~lTy~el~ 85 (651)
T PLN02736 21 WNVYRSARSPLKLVSRF-PDHPEIGTLHDNFVYAVETFRDYKYLGTRIR--------VDGT------VGEYKWMTYGEAG 85 (651)
T ss_pred CCeecCccccccccccC-CCCCCCCCHHHHHHHHHHhCCCCCeEEEEec--------CCCC------CCCcEEEEHHHHH
Confidence 78999876665521111 1235667999999999999999999975310 1332 2356789999999
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHH
Q 009160 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLV 193 (541)
Q Consensus 114 ~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 193 (541)
++++++|++|.++|+++||+|+|+++|++||+++++||+++|++++|+++.++++++.+++++++++++|++.+..+.+.
T Consensus 86 ~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~ 165 (651)
T PLN02736 86 TARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLL 165 (651)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777777
Q ss_pred HhhcCCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechH
Q 009160 194 DLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHG 273 (541)
Q Consensus 194 ~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~ 273 (541)
.....++.++.++.++........ .....+....+++++...+...+.......++|+++|+|||||||.||||++||+
T Consensus 166 ~~~~~~~~l~~ii~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~ 244 (651)
T PLN02736 166 SCLSEIPSVRLIVVVGGADEPLPS-LPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHG 244 (651)
T ss_pred HHhhcCCCceEEEEECCCchhhhh-hhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecH
Confidence 766677778888887543211100 0000234567888887655433333345678999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe--CCcccccccchhhhcCcccccccccceEE
Q 009160 274 NVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVM 351 (541)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~ 351 (541)
|+++.+.+....+ .+.++|++++++|++|++++...+.++..|+++++ +++..+++. +++++||++
T Consensus 245 ~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~-----------i~~~~~t~~ 312 (651)
T PLN02736 245 NLIANVAGSSLST-KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDD-----------LAALRPTIF 312 (651)
T ss_pred HHHHHHHHHHhcc-CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHH-----------HHHhCCcEE
Confidence 9999988887777 78899999999999999999888889999999988 556667777 999999999
Q ss_pred eecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCC
Q 009160 352 ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAP 431 (541)
Q Consensus 352 ~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~ 431 (541)
+++|+++.++.+.........+.+.+++|++++..+...+..+. ...+.++++++++++..+|+++|.+++||++
T Consensus 313 ~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~ 387 (651)
T PLN02736 313 CSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGK-----NPSPMWDRLVFNKIKAKLGGRVRFMSSGASP 387 (651)
T ss_pred ecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCC-----CCCchHHHHHHHHHHHHhcCcEEEEEeCCCC
Confidence 99999999999988888888889999999999887766554111 1235678999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCC
Q 009160 432 LSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511 (541)
Q Consensus 432 l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~ 511 (541)
+++++.++++..+|++++++||+||+++.++.....+.+.+++|+|+|+++++|+|.+++++...+.+++.|||+|+||+
T Consensus 388 l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~ 467 (651)
T PLN02736 388 LSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPI 467 (651)
T ss_pred CCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCc
Confidence 99999999999999999999999999887766665566779999999999999999666655444455678999999999
Q ss_pred cccccCCCchhhHhhhccCCCceEEcccc
Q 009160 512 VTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 512 v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+|+|||++|+.|++.| ++||||+|+|+
T Consensus 468 v~~GY~~~~~~t~~~~--~~dgw~~TGDl 494 (651)
T PLN02736 468 IFKGYYKDEVQTREVI--DEDGWLHTGDI 494 (651)
T ss_pred cccccccCHHHHHhhh--ccCCCeeccce
Confidence 9999999999999999 88999999985
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-66 Score=563.98 Aligned_cols=475 Identities=32% Similarity=0.568 Sum_probs=374.8
Q ss_pred ccCCCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeH
Q 009160 30 PVDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTY 109 (541)
Q Consensus 30 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty 109 (541)
....+++||+.....+++ .+.++..|+.++|+++++++|+++|+..++.. ++. .++++++||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~--------~~~------~~~~~~~Ty 82 (666)
T PLN02614 21 RPSVGPVYRSIFAKDGFP----NPIEGMDSCWDVFRMSVEKYPNNPMLGRREIV--------DGK------PGKYVWQTY 82 (666)
T ss_pred CCCCCCcccCcccccccC----CCCCCCCcHHHHHHHHHHhCCCCCeEEEeccc--------CCC------CCCcEEeEH
Confidence 334477888876655532 13456779999999999999999999864211 222 234567999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch
Q 009160 110 GQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL 189 (541)
Q Consensus 110 ~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 189 (541)
+|+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++.+..
T Consensus 83 ~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~ 162 (666)
T PLN02614 83 QEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKI 162 (666)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hHHHHhhc-CCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEE
Q 009160 190 KKLVDLSG-QLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGV 268 (541)
Q Consensus 190 ~~~~~~~~-~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV 268 (541)
..+..... ..+.++.+|.+++........... .++...+++++...+.....+.....++|+++|+|||||||.||||
T Consensus 163 ~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV 241 (666)
T PLN02614 163 SELFKTCPNSTEYMKTVVSFGGVSREQKEEAET-FGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGV 241 (666)
T ss_pred HHHHHhcccccccceEEEEeCCCChHHhhhhhh-cCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEE
Confidence 44433221 122366777776432111000000 1344567888776543222222345689999999999999999999
Q ss_pred EechHHHHHHHHHHHhhC----CCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe--CCcccccccchhhhcCcccc
Q 009160 269 MMTHGNVLATVSAVMTIV----PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGD 342 (541)
Q Consensus 269 ~~th~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~ 342 (541)
++||+|+++.+......+ ..++++|++++++|++|++++...+.+++.|+++++ +++..+++.
T Consensus 242 ~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~----------- 310 (666)
T PLN02614 242 MISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIED----------- 310 (666)
T ss_pred EEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------
Confidence 999999998877655433 146789999999999999998776677889999988 567777777
Q ss_pred cccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCce
Q 009160 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRI 422 (541)
Q Consensus 343 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 422 (541)
+++++||+++++|++|+++.+.+.......+.+++++|+++++.+...++.+ .......+++++++++++++.+|+++
T Consensus 311 i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lg~~l 388 (666)
T PLN02614 311 LGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKG--QSHVEASPLCDKLVFNKVKQGLGGNV 388 (666)
T ss_pred HHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcC--CCCcccchHHHHHHHHHHHHHhCCcE
Confidence 9999999999999999999988877777777888999999999877665421 11123467899999999999999999
Q ss_pred EEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCC
Q 009160 423 RFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP 501 (541)
Q Consensus 423 r~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~ 501 (541)
|.+++||+++++++.++++...+++++++||+||+++.++...+.+ .+.+++|+|+|+++++|+|++++++.+ +++|+
T Consensus 389 r~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~-~~~g~ 467 (666)
T PLN02614 389 RIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDA-LASTP 467 (666)
T ss_pred EEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCccc-CCCCC
Confidence 9999999999988765554443589999999999987655444433 356899999999999999976654433 45788
Q ss_pred ccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 502 RGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 502 ~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
.|||+|+||++|+|||++|+.|+++| .||||+|+|+
T Consensus 468 ~GEl~vrGp~v~~GY~~~pe~T~~~f---~dGw~~TGDl 503 (666)
T PLN02614 468 RGEICIRGKTLFSGYYKREDLTKEVL---IDGWLHTGDV 503 (666)
T ss_pred CceEEEcCCcccccccCCHHHhhhhh---ccCCcccceE
Confidence 99999999999999999999999999 4788888874
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=560.35 Aligned_cols=472 Identities=29% Similarity=0.525 Sum_probs=377.7
Q ss_pred cCCCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHH
Q 009160 31 VDVGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYG 110 (541)
Q Consensus 31 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~ 110 (541)
...+++||+...++. +... .++..|++++|+++++++|+++|++.+... +++ .++++++||+
T Consensus 20 ~~~~~~~~~~~~~~~---~~~~-~~~~~t~~~~l~~~~~~~p~~~al~~~~~~--------~~~------~g~~~~~Ty~ 81 (660)
T PLN02861 20 PSAGPVYRSIYAKDG---LLDL-PADIDSPWQFFSDAVKKYPNNQMLGRRQVT--------DSK------VGPYVWLTYK 81 (660)
T ss_pred CCCCCcccccccccc---cccC-CCCCCCHHHHHHHHHHhCCCCCeEEEEecC--------CCC------CCCceEEEHH
Confidence 444788998876666 3222 256679999999999999999999864211 222 3456789999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchh
Q 009160 111 QAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK 190 (541)
Q Consensus 111 el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 190 (541)
|+.++++++|++|.++|+++||+|+|+++|++||+++++||+++|+++||+++.++++++.+++++++++++|++.+..+
T Consensus 82 el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~ 161 (660)
T PLN02861 82 EVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKIS 161 (660)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred HHHHhhcCC-CCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEE
Q 009160 191 KLVDLSGQL-DTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVM 269 (541)
Q Consensus 191 ~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~ 269 (541)
.+......+ +.++.+|.+++........... .++...+++++...+... .......++|+++|+|||||||.||||+
T Consensus 162 ~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~dd~a~i~yTSGTTG~PKGV~ 239 (660)
T PLN02861 162 SILSCLPKCSSNLKTIVSFGDVSSEQKEEAEE-LGVSCFSWEEFSLMGSLD-CELPPKQKTDICTIMYTSGTTGEPKGVI 239 (660)
T ss_pred HHHHhhhhCCCCCEEEEEECCCChhhhhhhhc-CCcEEEEHHHHHHhCccc-CCCCccCCCceEEEEecCCCCCCCCEEE
Confidence 555544433 2577888876532111000000 134556788877544321 1223456899999999999999999999
Q ss_pred echHHHHHHHHHHHhhCC----CCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe--CCcccccccchhhhcCccccc
Q 009160 270 MTHGNVLATVSAVMTIVP----DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDA 343 (541)
Q Consensus 270 ~th~~l~~~~~~~~~~~~----~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~i 343 (541)
+||+|+++.+......+. .+.++|++++++|++|++++...+.+++.|+++++ +++..+++. +
T Consensus 240 lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~-----------i 308 (660)
T PLN02861 240 LTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMED-----------V 308 (660)
T ss_pred EecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHH-----------H
Confidence 999999998777655441 24688999999999999998877778999999988 567777777 9
Q ss_pred ccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceE
Q 009160 344 SVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIR 423 (541)
Q Consensus 344 ~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr 423 (541)
++++||+++++|++|+++.+.+..+....+.+++++|+++.+.+++.++.+.. .....+.+++++|+++|+.+|+++|
T Consensus 309 ~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~lg~~lr 386 (660)
T PLN02861 309 QALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLK--QEEASPRLDRLVFDKIKEGLGGRVR 386 (660)
T ss_pred HHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CcCccHhHHHHHHHHHHHHhCCcEE
Confidence 99999999999999999999888888888899999999999999887652210 1123567899999999999999999
Q ss_pred EEEEccCCCCHHHHHHHHHHhC-CcceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCC
Q 009160 424 FILSGGAPLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP 501 (541)
Q Consensus 424 ~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~ 501 (541)
.+++||+|+++++.++++ .++ ..++|+||+||+++.++.....+ .+.+++|+|+|+++++|+|++++++.. .+.++
T Consensus 387 ~~~~Ggapl~~~~~~~~~-~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~-~~~~~ 464 (660)
T PLN02861 387 LLLSGAAPLPRHVEEFLR-VTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDA-LSDVP 464 (660)
T ss_pred EEEECCCCCCHHHHHHHH-HHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCccc-CCCCC
Confidence 999999999999876554 455 47999999999987665443332 356899999999999999965544322 23556
Q ss_pred ccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 502 RGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 502 ~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
.|||+|+||+++.|||++|+.|+++| .||||+|+|+
T Consensus 465 ~GEi~vrGp~v~~GY~~~pe~T~~~f---~dGw~~TGDl 500 (660)
T PLN02861 465 RGEICLRGNTLFSGYHKRQDLTEEVL---IDGWFHTGDI 500 (660)
T ss_pred ceeEEEcCCcccccccCCHHHHHhhh---hccCcccCce
Confidence 89999999999999999999999999 3788888874
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=556.97 Aligned_cols=472 Identities=32% Similarity=0.552 Sum_probs=385.3
Q ss_pred CCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHH
Q 009160 33 VGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQA 112 (541)
Q Consensus 33 ~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el 112 (541)
.+++||+...++.+. . ..++..|++++|++.++++|+++|++.+... ++. .++++++||+|+
T Consensus 21 ~~~~~~~~~~~~~~~---~-~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~--------~~~------~~~~~~~Ty~el 82 (660)
T PLN02430 21 VGPVYRNLLSKKGFP---P-IDSDITTAWDIFSKSVEKYPDNKMLGWRRIV--------DGK------VGPYMWKTYKEV 82 (660)
T ss_pred CCCcccccccccccc---C-CCCCCCCHHHHHHHHHHhCCCCceEEEEecC--------CCC------CCCcEEEEHHHH
Confidence 478899977665532 1 2257789999999999999999999875321 232 346678999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-hH
Q 009160 113 FETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-KK 191 (541)
Q Consensus 113 ~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-~~ 191 (541)
.++++++|++|.+.|+++||+|+|+++|++||+++++||+++|+++||++++++++++.+++++++++++|++.... +.
T Consensus 83 ~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~ 162 (660)
T PLN02430 83 YEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKEL 162 (660)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987643 23
Q ss_pred HHHhhcCCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEec
Q 009160 192 LVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMT 271 (541)
Q Consensus 192 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~t 271 (541)
+.......+.++.+|++++........... .+....+|+++...+...+.......++|+++|+|||||||.||||++|
T Consensus 163 ~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lt 241 (660)
T PLN02430 163 LEPDCKSAKRLKAIVSFTSVTEEESDKASQ-IGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT 241 (660)
T ss_pred HhhhcccCCCceEEEEECCCChHHhhhhhc-CCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEee
Confidence 333333355678888886543211100001 2345678999887665444334445789999999999999999999999
Q ss_pred hHHHHHHHHHHHhhC----CCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe--CCcccccccchhhhcCccccccc
Q 009160 272 HGNVLATVSAVMTIV----PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASV 345 (541)
Q Consensus 272 h~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~i~~ 345 (541)
|+|+++.+....... ..++++|++++++|++|++++...+.++..|+++++ .++..+.+. +++
T Consensus 242 h~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~-----------l~~ 310 (660)
T PLN02430 242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDD-----------LME 310 (660)
T ss_pred cHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHH-----------HHH
Confidence 999998877654321 146789999999999999999887778999999987 556667777 999
Q ss_pred ccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEE
Q 009160 346 LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFI 425 (541)
Q Consensus 346 ~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i 425 (541)
++||++.++|++|+++.+.+.......+++++++|+++++.+...+..+.. .....+++|.++|+++++.+|+++|.+
T Consensus 311 ~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~l~~~~i~~~~G~~lr~~ 388 (660)
T PLN02430 311 LKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS--HKKASPMADFLAFRKVKAKLGGRLRLL 388 (660)
T ss_pred hCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCC--CCCcchhHHHHHHHHHHHHhCCeEEEE
Confidence 999999999999999999988888888899999999999999887763321 112467899999999999999999999
Q ss_pred EEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccE
Q 009160 426 LSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504 (541)
Q Consensus 426 ~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GE 504 (541)
++||+++++++.++++...++.++++||+||+++..+...+.+ ...+++|+|.++++++|+|++++++.+ .+.++.||
T Consensus 389 ~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~-~~~~~~GE 467 (660)
T PLN02430 389 ISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDP-LGEPPRGE 467 (660)
T ss_pred EECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCccc-CCCCCcce
Confidence 9999999999988887665578999999999988776655443 356999999999999999877766543 44567899
Q ss_pred EEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 505 IVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 505 i~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+|+|++++.|||++|+.|++.| .||||+|+|+
T Consensus 468 i~vrg~~v~~GY~~~~e~t~~~~---~dGw~~TGDi 500 (660)
T PLN02430 468 ICVRGKCLFSGYYKNPELTEEVM---KDGWFHTGDI 500 (660)
T ss_pred EEecCCCccccccCChHHhhhhh---hccceeccce
Confidence 99999999999999999999998 5899999884
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-65 Score=559.37 Aligned_cols=502 Identities=36% Similarity=0.596 Sum_probs=391.4
Q ss_pred eeccccccccccccC------CCCCCccCccCCCccccccccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceec-
Q 009160 18 LRNSKKEKKRGIPVD------VGGEPGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVA- 90 (541)
Q Consensus 18 ~~~~~~~~~~~~~~~------~~~~~r~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~- 90 (541)
+++..+.+.+.+++. .+++||.....+.........|++..|++++|.++++++|+++|+++++....+.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~ 102 (700)
T PTZ00216 23 IEEYRRYGPQNVPVPGTETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVK 102 (700)
T ss_pred hhhhhhcCCcceecCCCCCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccc
Confidence 455544444555553 2566666543321000112245567899999999999999999999863211011111
Q ss_pred -cCCc--eeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCH
Q 009160 91 -DNGR--SFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167 (541)
Q Consensus 91 -~~g~--~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~ 167 (541)
.+|+ .|.....++++++||+||.++++++|++|.++|+++||+|+|+++|++||+++++||+++|++++|+++.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~ 182 (700)
T PTZ00216 103 DADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182 (700)
T ss_pred cCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCH
Confidence 1222 2333344577899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCceEEEECccchhHHHHhhcC--CCCccEEEEecCCCccccccccccCCeEEeeHHHHHhccc--CCCCC
Q 009160 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQ--LDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR--ENPVD 243 (541)
Q Consensus 168 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 243 (541)
+++.+++++++++++|++.+....+...... .+. ..+|++++..... ....+...+|+++...+. ....+
T Consensus 183 ~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~-~~ii~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (700)
T PTZ00216 183 DALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPN-TTIIYLDSLPASV-----DTEGCRLVAWTDVVAKGHSAGSHHP 256 (700)
T ss_pred HHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCc-eEEEEECCCcccc-----ccCCceEEEHHHHHHhCCccccccc
Confidence 9999999999999999998766555443221 223 3566665432211 012456788999887652 11111
Q ss_pred -CCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC----CCCCCCcEEEEccChHHHHHHHHHHHHhhcCc
Q 009160 244 -ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV----PDLGSKDVYLAYLPLAHVLELVAENLIAGVGS 318 (541)
Q Consensus 244 -~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~ 318 (541)
.....++|+++|+|||||||.||||++||+|+++.+.+....+ ..++++|++++++|++|++++......+..|+
T Consensus 257 ~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~ 336 (700)
T PTZ00216 257 LNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGA 336 (700)
T ss_pred cCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCC
Confidence 2345689999999999999999999999999999887765443 12467899999999999999887777788999
Q ss_pred eEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCC
Q 009160 319 AIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGA 398 (541)
Q Consensus 319 ~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 398 (541)
++++.++..+.+.. .....++++++||++.++|++|+++.+.........+.+++++|++++..+++.+.
T Consensus 337 ~v~~~~~~~l~~~~----~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------ 406 (700)
T PTZ00216 337 LIGFGSPRTLTDTF----ARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALK------ 406 (700)
T ss_pred EEEECCHHHhhhhh----ccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH------
Confidence 99887777666530 11112388999999999999999999988888878888999999999998887665
Q ss_pred CchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCc
Q 009160 399 WGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL 478 (541)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~ 478 (541)
.+..++++|+++|+++++.+|+++|.+++||+++++++.++++..++ +++|+||+||+++.++.....+...+++|+|+
T Consensus 407 ~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~ 485 (700)
T PTZ00216 407 EGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLL 485 (700)
T ss_pred cCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcC
Confidence 34456789999999999999999999999999999999999998888 99999999999887776665566779999999
Q ss_pred CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 479 ~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+|++++|+|.++.. ..+.+++.|||+|+|+++++|||++|+.|++.| ++||||+|+|+
T Consensus 486 ~g~evkI~d~~~~~--~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f--~~dGw~~TGDi 543 (700)
T PTZ00216 486 KGVEMKLLDTEEYK--HTDTPEPRGEILLRGPFLFKGYYKQEELTREVL--DEDGWFHTGDV 543 (700)
T ss_pred CCeEEEEeechhhc--cCCCCCCCceEEEcCCcccchhcCChhHhhhhc--cccCCeeccce
Confidence 99999999954322 223456789999999999999999999999999 88999999985
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-56 Score=472.21 Aligned_cols=388 Identities=31% Similarity=0.461 Sum_probs=314.6
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...++.+++.++++++|+++|+.+ .+. . ..+||+||.++++++|+.|++.|+++||+|+
T Consensus 9 ~~~~~~~~l~~~a~~~~~~~a~~~------------~~~-------~--~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVa 67 (534)
T COG0318 9 AELTLASLLERAARRNPDRPALIF------------LGR-------G--GRLTYRELDRRANRLAAALQALGVKPGDRVA 67 (534)
T ss_pred ccccHHHHHHHHHHhCCCceEEEE------------cCC-------C--ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 457899999999999999999987 333 0 1499999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
|+++|+++++++++||+++|++++|++|.+.++++.++++.+++++++++.+..+.+..+....+....++.........
T Consensus 68 il~~N~~e~~~~~~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (534)
T COG0318 68 ILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRL 147 (534)
T ss_pred EECCCCHHHHHHHHHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999885555555544333333333222211100
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC--CCCCc
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD--LGSKD 293 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~~d 293 (541)
. .+++++...............++|+++|+|||||||.||||++||+|++.+.......+ . ++++|
T Consensus 148 ----------~-~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~~~d 215 (534)
T COG0318 148 ----------P-ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-GGGLTPDD 215 (534)
T ss_pred ----------c-ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-cccCCCCc
Confidence 0 23455532222222222236789999999999999999999999999999988888887 6 89999
Q ss_pred EEEEccChHHHHHHHHHHHH-hhcCceEEe-----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 294 VYLAYLPLAHVLELVAENLI-AGVGSAIGY-----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 294 ~~l~~~pl~h~~~~~~~~~~-l~~G~~v~~-----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
++++.+|++|++|+...+.+ +..|+++++ +++..++.. +.++++|++.++|+++..++.....
T Consensus 216 ~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~-----------i~~~~~t~~~~vPt~~~~ll~~~~~ 284 (534)
T COG0318 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWL-----------IEKYKVTVLSGVPTFLRELLDNPEK 284 (534)
T ss_pred eEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHH-----------HHHhcceEEecchHHHHHHHhCCcc
Confidence 99999999999999985554 999999988 345555565 8888999999999999998764322
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCC-ceEEEEEccCCCCHHHHHHHHHHhC-
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGG-RIRFILSGGAPLSADTQRFINICLG- 445 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~lr~i~~gg~~l~~~~~~~~~~~~g- 445 (541)
..... . ++|.+++||+++++++++++++.++
T Consensus 285 ~~~~~-----------------------------------------------~~~lr~~~~gg~~~~~~~~~~~~~~~~~ 317 (534)
T COG0318 285 DDDDL-----------------------------------------------SSSLRLVLSGGAPLPPELLERFEERFGP 317 (534)
T ss_pred Ccccc-----------------------------------------------ccceEEEEecCCcCCHHHHHHHHHHhCC
Confidence 11000 1 3999999999999999999999997
Q ss_pred CcceeccCcccccccccccCCCC--CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 446 APIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
..++++||+||+++.++.....+ .+.+++|+|+|+++++|+| ++++... +|++|||+|+||+++.|||++|+.|
T Consensus 318 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd-~~~~~~~---pg~vGei~irgp~v~~GY~~~pe~t 393 (534)
T COG0318 318 IAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVD-PDGGEVL---PGEVGEIWVRGPNVMKGYWNRPEAT 393 (534)
T ss_pred CceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEe-CCCCccC---CCCceEEEEECchhhhhhcCChHHH
Confidence 47999999999998887776665 4678889999999999999 5555322 2789999999999999999999999
Q ss_pred HhhhccCCCceEEcccc
Q 009160 524 KEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 524 ~~~f~~d~dGw~~~~~~ 540 (541)
++.| ++||||+|+|+
T Consensus 394 ~~~f--~~~gW~~TGDl 408 (534)
T COG0318 394 AEAF--DEDGWLRTGDL 408 (534)
T ss_pred HHhh--ccCCeeeecce
Confidence 9988 55799999886
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=461.35 Aligned_cols=362 Identities=28% Similarity=0.373 Sum_probs=300.3
Q ss_pred EeeHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEE
Q 009160 106 WLTYGQAFETICNFASGLAQLG--HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (541)
Q Consensus 106 ~~Ty~el~~~~~~la~~L~~~g--v~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 183 (541)
.+||.|+.+++.++|..|.++| +++||+|++++||++++.++++||+..|+++.|++|.+.+.++.+.++.++++++|
T Consensus 45 ~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif 124 (537)
T KOG1176|consen 45 ELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIF 124 (537)
T ss_pred EEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEE
Confidence 7999999999999999999875 89999999999999999999999999999999999999999999999999999999
Q ss_pred ECccchhHHHHhhcCCCCccEEEEecCCCccccccccccCCeEEee-HHHHHhcccCCCCCCCCCCCCCeEEEEeccCCC
Q 009160 184 CGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITS-FADVQILGRENPVDADYPVSADVAVIMYTSGST 262 (541)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTT 262 (541)
++.+..+++.+....+. ..++++....... ... ......+ +.++...+.... ..+...+|++.|.||||||
T Consensus 125 ~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTT 196 (537)
T KOG1176|consen 125 VDEDFYDKISEATSKLA--LKIIVLTGDEGVI--SIS--DLVEDLDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTT 196 (537)
T ss_pred EcCchHHHHHHHHhhcC--CceEEEecccCcc--ccc--cccccccchhhccccCCCcc--cccCCCCCeEEEecCCCCC
Confidence 99999998887766555 4555555431110 000 0011111 333332221111 4556779999999999999
Q ss_pred CCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHH-hhcCceEEe---CCcccccccchhhhcC
Q 009160 263 GLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLI-AGVGSAIGY---GTPLTLTDTSSKIKKG 338 (541)
Q Consensus 263 G~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~-l~~G~~v~~---~~~~~l~~~~~~~~~~ 338 (541)
|.||||++||++++.+.......+ .+...|+.++.+|++|.+|+...+.+ +..|+++++ +++..+++.
T Consensus 197 g~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~------- 268 (537)
T KOG1176|consen 197 GLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL------- 268 (537)
T ss_pred CCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH-------
Confidence 999999999999999988777666 77789999999999999999997775 555555555 788889998
Q ss_pred cccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHh
Q 009160 339 TQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAIL 418 (541)
Q Consensus 339 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (541)
+++|++|+++++|.++..|.+..... ...
T Consensus 269 ----i~kykvt~~~~vP~~~~~l~~~p~~~-----------------------------------------------~~~ 297 (537)
T KOG1176|consen 269 ----IEKYKVTHLFLVPPVLNMLAKSPIVK-----------------------------------------------KYD 297 (537)
T ss_pred ----HHHhCEEEEEcChHHHHHHhcCCccC-----------------------------------------------ccc
Confidence 99999999999999999998742100 011
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHHhC-CcceeccCcccccccccccCCCCC-CCCCcCCCcCCeEEEEEecCCCCccCC
Q 009160 419 GGRIRFILSGGAPLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDDS-SVGRVGAPLPCSFIKLIDWPEGGYLTS 496 (541)
Q Consensus 419 g~~lr~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~~-~~~~vG~p~~~~ev~ivd~~~~~~~~~ 496 (541)
.+++|.+.+||+++++++.+++++.++ ..+.++||+||+++.++.....+. +++++|+++++++++|.+ ++|..+
T Consensus 298 l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~l-- 374 (537)
T KOG1176|consen 298 LSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLD-ETGVSL-- 374 (537)
T ss_pred CCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeC-CCCCCC--
Confidence 249999999999999999999999998 899999999999988887776664 789999999999988888 777765
Q ss_pred CCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 497 DSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 497 ~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++++.||||+||+++++|||+||++|++.| ++||||||+|+
T Consensus 375 -~~~~~GEI~vrg~~imkGY~~NpeaT~~~~--~~~GW~~TGDi 415 (537)
T KOG1176|consen 375 -GPNQTGEICVRGPQVMKGYLKNPEATKEAF--DDDGWFHTGDL 415 (537)
T ss_pred -CCCCceEEEEECcccchhhcCChHHHHhhc--ccCCccccCce
Confidence 488899999999999999999999999999 88899999984
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=425.37 Aligned_cols=388 Identities=24% Similarity=0.323 Sum_probs=329.5
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...|+.++++-.+++.||+.|+++-. .|. .+||+|+.+.++++|++|.++|+++||+|+
T Consensus 48 ~~~Tigq~l~~~t~~v~dkea~Vf~~----------eg~-----------R~Tf~~~~~ev~slAaGll~lGL~kGDrVg 106 (596)
T KOG1177|consen 48 DSETIGQLLETTTERVPDKEAAVFDH----------EGI-----------RLTFSEFVSEVESLAAGLLSLGLKKGDRVG 106 (596)
T ss_pred ccccHHHHHHHHhhccCcceEEEEee----------ccc-----------hhhHHHHHHHHHHHHhhHHhhcCCCCCEEE
Confidence 35799999999999999999998732 343 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhh-------------c
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLS-------------G 197 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~-------------~ 197 (541)
+..||+.+|+...+||.++|.+.+++||.+..+++++.|++.+++++|+...+. +.+.++. .
T Consensus 107 vwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~ 186 (596)
T KOG1177|consen 107 VWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSE 186 (596)
T ss_pred EecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccc
Confidence 999999999999999999999999999999999999999999999999986543 3344433 2
Q ss_pred CCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCC-----CCCCCCCCCeEEEEeccCCCCCccEEEech
Q 009160 198 QLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPV-----DADYPVSADVAVIMYTSGSTGLPKGVMMTH 272 (541)
Q Consensus 198 ~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~PKgV~~th 272 (541)
.++.+.++|..++.... .....++|+...+..... ......|||++.|.|||||||.|||+.+||
T Consensus 187 ~lp~lthvi~~~ed~~~----------~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH 256 (596)
T KOG1177|consen 187 LLPELTHVILADEDHPL----------PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSH 256 (596)
T ss_pred ccccceEEEecCCCCcC----------CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeeh
Confidence 35778888888744322 244557777766554321 124567899999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe----CCcccccccchhhhcCccccccccc
Q 009160 273 GNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLR 347 (541)
Q Consensus 273 ~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~ 347 (541)
.|++++.......+ ++.+++++++..|++|.++... ++.+|..|+++++ ++|.+.++. ++++|
T Consensus 257 ~~~~Nna~~vg~r~-g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqa-----------i~~ek 324 (596)
T KOG1177|consen 257 YNFLNNARAVGARA-GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQA-----------ISNEK 324 (596)
T ss_pred hhhhhhHHHHHHHh-CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHH-----------HHhhc
Confidence 99999999998888 8999999999999999999666 8889999999999 777778887 99999
Q ss_pred ceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEE
Q 009160 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILS 427 (541)
Q Consensus 348 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~ 427 (541)
+|.++.+|+++..+++....+. ...+++|.++.
T Consensus 325 cT~l~gtPtM~~Dlln~~~~~~-----------------------------------------------~~~s~lr~~vi 357 (596)
T KOG1177|consen 325 CTTLYGTPTMFVDLLNIPQKQQ-----------------------------------------------VDLSSLRKGVI 357 (596)
T ss_pred eEEEecChHHHHHHhcchhhcc-----------------------------------------------Cchhhhhhhee
Confidence 9999999999999986432211 11138999999
Q ss_pred ccCCCCHHHHHHHHHHhCCc-ceeccCcccccccccccCCCCC---CCCCcCCCcCCeEEEEEecCCCCccCCCCCCCcc
Q 009160 428 GGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDS---SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRG 503 (541)
Q Consensus 428 gg~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~G 503 (541)
||+|+|+++.+.+.+..+.. +...||+||++...+.....+. +.-++|+.+++.|.+|+| .+|...+ .|..|
T Consensus 358 gGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~---~~~~G 433 (596)
T KOG1177|consen 358 GGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVP---LGTKG 433 (596)
T ss_pred CCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccc---cCCCc
Confidence 99999999999999876654 6678999999988877766553 458999999999999999 7776654 77789
Q ss_pred EEEEccCCcccccCCCchhhHhhhccCCCceEEccc
Q 009160 504 EIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVA 539 (541)
Q Consensus 504 Ei~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~ 539 (541)
|||+||++.+.|||++++.|+++. +.|-|++|+|
T Consensus 434 el~iRGY~tMl~Ywg~~~kT~eti--~~drW~~TGD 467 (596)
T KOG1177|consen 434 ELLIRGYSTMLGYWGEEEKTKETI--GNDRWYDTGD 467 (596)
T ss_pred eEEEEechhheeecCCcccchhhc--ccccceecCc
Confidence 999999999999999999999998 9999999987
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=480.44 Aligned_cols=427 Identities=19% Similarity=0.249 Sum_probs=343.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
.++..|+.++|.+.++++|+++|+..+. + .++++++||+|+.++++++|++|.++|+++||+
T Consensus 423 ~~~~~Tl~dll~~~a~~~pd~~al~~~~----------~--------~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDr 484 (1452)
T PTZ00297 423 LAGVRSLGEMWERSVTRHSTFRCLGQTS----------E--------SGESEWLTYGTVDARARELGSGLLALGVRPGDV 484 (1452)
T ss_pred cccCCCHHHHHHHHHHHCCCCeEEEEec----------c--------CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 3566799999999999999999997421 0 134568999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
|+|+++|++||+++++||+++|+++||++++ .+++.+++++++++++|++.+..+++.+... +.+++||++++...
T Consensus 485 VaIls~N~~Ewvia~lA~~~~GaV~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~--~~Lr~IIv~d~~~~ 560 (1452)
T PTZ00297 485 IGVDCEASRNIVILEVACALYGFTTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRS--RKLETVVYTHSFYD 560 (1452)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCEEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcc--cCCcEEEEECCCcc
Confidence 9999999999999999999999999999864 6799999999999999999887777666533 37899999874311
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCC-CCCCCCCCeEEEEe---ccCCCCCccEEEechHHHHHHHHHHHhhC--C
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVD-ADYPVSADVAVIMY---TSGSTGLPKGVMMTHGNVLATVSAVMTIV--P 287 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~---TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~ 287 (541)
..........++.+.+|+++...+...+.+ .....++|++.|+| ||||||.||||++||+|+++.+....... +
T Consensus 561 ~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~ 640 (1452)
T PTZ00297 561 EDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLP 640 (1452)
T ss_pred cccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcccc
Confidence 100000000234577899999877532222 23447889999996 99999999999999999999998865432 2
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
...++|++++++||+|++++...+.+++.|++++++++..++++ +++++||++++||++|+++.+.+.+
T Consensus 641 ~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~d~~~lled-----------L~~~rPTv~~~VPrv~ekI~~~i~~ 709 (1452)
T PTZ00297 641 SSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQRA-----------FVKFQPTILVAAPSLFSTSRLQLSR 709 (1452)
T ss_pred CCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHH-----------HHHHCCEEEEecHHHHHHHHHHHHH
Confidence 45678999999999999998888888999999998988888888 9999999999999999999999988
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccC--CCCHHHHHHHHHHhC
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGA--PLSADTQRFINICLG 445 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~--~l~~~~~~~~~~~~g 445 (541)
+....+++++++|++|++.+.+.... .....+++|+++|+++|+.+|+++|.+++||+ +++..+.. +
T Consensus 710 ~~~~~~~~~~~lf~~A~~~k~~~~~~-----g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~ 778 (1452)
T PTZ00297 710 ANERYSAVYSWLFERAFQLRSRLINI-----HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------H 778 (1452)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------C
Confidence 88888899999999999987665441 12345699999999999999999999999984 56544444 5
Q ss_pred CcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 446 APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
+++..+||+||+. +.+.+.+.+. .|+|+|++|+||.|+++.++. +.+|||+++ |++||++|++
T Consensus 779 i~i~~g~glTE~~---~~~~~~~~~~--~G~PlpgvEvKI~~~~E~~~~-----~~~GEIlvr-------~~kdpe~T~e 841 (1452)
T PTZ00297 779 ISVCYVPCLREVF---FLPSEGVFCV--DGTPAPSLQVDLEPFDEPSDG-----AGIGQLVLA-------KKGEPRRTLP 841 (1452)
T ss_pred ceEEEecceEEee---eecCCCCccc--CCeecCceEEEEcccccccCC-----CCCCeEEEE-------ECCChHHHHH
Confidence 7788999999953 3344444333 399999999999986665442 246999995 4589999998
Q ss_pred hh-ccCCCceEEccccC
Q 009160 526 VY-KVMLDRFMLMVALR 541 (541)
Q Consensus 526 ~f-~~d~dGw~~~~~~~ 541 (541)
.+ ..++||.+.++||+
T Consensus 842 ~~~gW~~dG~L~IidRk 858 (1452)
T PTZ00297 842 IAAQWKRDRTLRLLGPP 858 (1452)
T ss_pred hhCcCccCCeEEEEecc
Confidence 64 23468888888885
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=460.82 Aligned_cols=386 Identities=22% Similarity=0.287 Sum_probs=301.2
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...++.++|+++++++|+++|+.+.+ . .+.++.+||+||.++++++|++|.+.|+++||+|+
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~a~~~~~------------~------~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Va 98 (614)
T PRK08180 37 YPRRLTDRLVHWAQEAPDRVFLAERG------------A------DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLM 98 (614)
T ss_pred cCccHHHHHHHHHHHCCCCceeeecc------------C------CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 35689999999999999999997631 1 12346899999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCC-----HHHHHHHHhhcCceEEEECccc--hhHHHHhhcCCCCccEEEEe
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLG-----EEALCYSLNETEVTTVICGSKE--LKKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~ii~~ 208 (541)
++++|+++|+++++||+++|++++|+++.++ .+++.+++++++++++|+++.. ...+.... .....++..
T Consensus 99 i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~i~~ 175 (614)
T PRK08180 99 ILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVV---PADVEVVAV 175 (614)
T ss_pred EecCCCHHHHHHHHHHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhc---cCCceEEEe
Confidence 9999999999999999999999999999998 7999999999999999998642 12222111 111223333
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCC--CCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENP--VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 286 (541)
+.... .....+++++........ .......++|+++|+|||||||.||||++||+|+++.+......+
T Consensus 176 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~ 245 (614)
T PRK08180 176 RGAVP----------GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF 245 (614)
T ss_pred cCCCC----------CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc
Confidence 32110 011234666554321111 111234679999999999999999999999999999888776666
Q ss_pred CCCC--CCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCC----cc---cccccchhhhcCcccccccccceEEeecHH
Q 009160 287 PDLG--SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT----PL---TLTDTSSKIKKGTQGDASVLRPTVMASVPA 356 (541)
Q Consensus 287 ~~~~--~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~----~~---~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 356 (541)
.+. ..|++++++|++|++++.. ++.+++.|+++++.+ +. .+++. ++++++|+++++|+
T Consensus 246 -~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~-----------i~~~~~t~~~~vP~ 313 (614)
T PRK08180 246 -PFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRN-----------LREISPTVYFNVPK 313 (614)
T ss_pred -cccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHH-----------HHHhCCcEEechHH
Confidence 442 5689999999999999765 667899999998832 22 23334 89999999999999
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHH
Q 009160 357 ILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT 436 (541)
Q Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~ 436 (541)
++..|++...... ..+...++++|.+++||+++++++
T Consensus 314 ~~~~l~~~~~~~~-------------------------------------------~~~~~~~~~lr~v~~gGa~l~~~~ 350 (614)
T PRK08180 314 GWEMLVPALERDA-------------------------------------------ALRRRFFSRLKLLFYAGAALSQDV 350 (614)
T ss_pred HHHHHHHHHHhch-------------------------------------------hhhhhhccceeEEEEccCCCCHHH
Confidence 9999987542210 011122359999999999999999
Q ss_pred HHHHHHH----hC--CcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 437 QRFINIC----LG--APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 437 ~~~~~~~----~g--~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
.+++++. +| +++++.||+||++++++.......+.+++|+|++|++++|+| .+..|||+|+|+
T Consensus 351 ~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d-----------~~~~GEi~vrg~ 419 (614)
T PRK08180 351 WDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVP-----------VGGKLEVRVKGP 419 (614)
T ss_pred HHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEec-----------CCCCcEEEEecC
Confidence 9998875 33 679999999999877665544455678999999999999998 234699999999
Q ss_pred CcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 511 NVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 511 ~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+++.|||++|+.|++.| +.||||+|+|+
T Consensus 420 ~v~~GY~~~p~~t~~~~--~~dgw~~TGDl 447 (614)
T PRK08180 420 NVTPGYWRAPELTAEAF--DEEGYYRSGDA 447 (614)
T ss_pred ccchhhcCChhHhHhhc--ccCCceeccce
Confidence 99999999999999999 88999999985
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=454.46 Aligned_cols=392 Identities=24% Similarity=0.291 Sum_probs=298.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
....++.++|+++++++|+++|+.+. ++. .+.++.+||+||.++++++|++|.+.|+++||+|
T Consensus 46 ~~~~~l~~~l~~~a~~~pd~~a~~~~-----------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V 108 (624)
T PRK12582 46 PYPRSIPHLLAKWAAEAPDRPWLAQR-----------EPG------HGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPV 108 (624)
T ss_pred CcccCHHHHHHHHHHHCCCchheecc-----------cCC------CCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 45678999999999999999999763 110 1234689999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCH-----HHHHHHHhhcCceEEEECccc-hhHHHHhhcCCCCccEEEEe
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGE-----EALCYSLNETEVTTVICGSKE-LKKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~ii~~ 208 (541)
+++++|+++|+++++||+++|++++|+++.++. +++.++++.++++++|+++.. ........... .. .++.+
T Consensus 109 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~-~~i~~ 186 (624)
T PRK12582 109 MILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLL-DV-TVVHV 186 (624)
T ss_pred EEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhc-Cc-eEEEE
Confidence 999999999999999999999999999999875 899999999999999998642 12111111111 22 23444
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCC--CCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPV--DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 286 (541)
+.... .....+++++......... ......++++++|+|||||||.||||++||+++++.+......+
T Consensus 187 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~ 256 (624)
T PRK12582 187 TGPGE----------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR 256 (624)
T ss_pred cCCCc----------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc
Confidence 32211 0112345555443211111 11234678999999999999999999999999998877665444
Q ss_pred CCCCC---CcEEEEccChHHHHHHHH-HHHHhhcCceEEeCC----cccccccchhhhcCcccccccccceEEeecHHHH
Q 009160 287 PDLGS---KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAIL 358 (541)
Q Consensus 287 ~~~~~---~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~ 358 (541)
.... .|++++++|++|++++.. ++.++..|+++++.+ +..+.+ +...++++++|+++++|+++
T Consensus 257 -~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~--------~~~~i~~~~~t~~~~vP~~~ 327 (624)
T PRK12582 257 -PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEE--------TIRNLREISPTVYGNVPAGY 327 (624)
T ss_pred -cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHH--------HHHHHHhcCCeEEeccCHHH
Confidence 3333 589999999999999876 556799999998832 221111 11227889999999999999
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHH
Q 009160 359 DRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQR 438 (541)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~ 438 (541)
.++.+...... ..+...+++||.+++||+++++++.+
T Consensus 328 ~~l~~~~~~~~-------------------------------------------~~~~~~~~slr~i~~gGa~l~~~~~~ 364 (624)
T PRK12582 328 AMLAEAMEKDD-------------------------------------------ALRRSFFKNLRLMAYGGATLSDDLYE 364 (624)
T ss_pred HHHHHHHhhCH-------------------------------------------HHHHHHhhheeEEEecCCCCCHHHHH
Confidence 98876432110 00111124899999999999999999
Q ss_pred HHHHHh------CCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCc
Q 009160 439 FINICL------GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV 512 (541)
Q Consensus 439 ~~~~~~------g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v 512 (541)
++++.+ +++++++||+||++.+++.......+.+++|+|+||++++|++ .|+.|||+|+|+++
T Consensus 365 ~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~-----------~G~~GEl~vrg~~v 433 (624)
T PRK12582 365 RMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP-----------VGDKYEVRVKGPNV 433 (624)
T ss_pred HHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc-----------CCCceEEEEECCcc
Confidence 998863 3689999999999876653333445678999999999999975 45689999999999
Q ss_pred ccccCCCchhhHhhhccCCCceEEcccc
Q 009160 513 TVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 513 ~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+.|||++|+.|++.| +.||||+|+|+
T Consensus 434 ~~GY~~~p~~t~~~f--~~dgw~~TGDl 459 (624)
T PRK12582 434 TPGYHKDPELTAAAF--DEEGFYRLGDA 459 (624)
T ss_pred cccccCCccchhhhc--CccCCccccce
Confidence 999999999999999 88999999984
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=450.99 Aligned_cols=388 Identities=21% Similarity=0.238 Sum_probs=304.7
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|+++++++|+++|+.. +++ .+||.||.++++++|++|.+.|+++||+|++
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v 62 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTIS------------GNR-----------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAI 62 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46899999999999999999975 333 6999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhh-cCCCCccEEEEecCCCccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~~~~~~ 215 (541)
+++|+++|+++++||+++|++++|+++.++++++.++++++++++++++.+.......+. ..++.++.++.+++.....
T Consensus 63 ~~~n~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 142 (563)
T PLN02860 63 AALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSV 142 (563)
T ss_pred EcCCCHHHHHHHHHHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccc
Confidence 999999999999999999999999999999999999999999999999876533333321 2344455555554322100
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 295 (541)
... -......+++...............++++++|+|||||||.||||+++|++++.........+ .+.++|++
T Consensus 143 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~~ 216 (563)
T PLN02860 143 FIF-----LNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDVY 216 (563)
T ss_pred ccc-----hhhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCEE
Confidence 000 001111222211111111111234678999999999999999999999999988777666666 78899999
Q ss_pred EEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhcc
Q 009160 296 LAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK 372 (541)
Q Consensus 296 l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 372 (541)
+..+|++|++++...+.++..|+++++ +++..+++. ++++++|+++++|+++..+.+.......
T Consensus 217 l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~-- 283 (563)
T PLN02860 217 LHTAPLCHIGGLSSALAMLMVGACHVLLPKFDAKAALQA-----------IKQHNVTSMITVPAMMADLISLTRKSMT-- 283 (563)
T ss_pred EEecCchhhccHHHHHHHHHcCceEEecCCCCHHHHHHH-----------HHHhCCeeEEeChHHHHHHHHhhhhhhc--
Confidence 999999999999888889999999988 566666666 9999999999999999998764321100
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcceec
Q 009160 373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG 451 (541)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~ 451 (541)
....+++|.+++||+++++++.+.+++.| ++++++.
T Consensus 284 -------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~ 320 (563)
T PLN02860 284 -------------------------------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSA 320 (563)
T ss_pred -------------------------------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecC
Confidence 00113899999999999999999999988 7899999
Q ss_pred cCcccccccccccCCCC-----------------------CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEc
Q 009160 452 YGLTETCAGGTFSEVDD-----------------------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA 508 (541)
Q Consensus 452 YG~TE~~~~~~~~~~~~-----------------------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~ 508 (541)
||+||+++.++.....+ ....++|+|+|+++++|++ ++ +++.|||+|+
T Consensus 321 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~--------~g~~Gel~v~ 391 (563)
T PLN02860 321 YGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE--------SSRVGRILTR 391 (563)
T ss_pred CCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEec-CC--------CCceeEEEEe
Confidence 99999876554332211 1124789999999999998 22 4578999999
Q ss_pred cCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 509 GPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 509 g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|++++.|||++|+.|++.| +.||||+|+|+
T Consensus 392 g~~~~~GY~~~~~~t~~~~--~~~g~~~TGDl 421 (563)
T PLN02860 392 GPHVMLGYWGQNSETASVL--SNDGWLDTGDI 421 (563)
T ss_pred cCcccccccCCccccchhc--cCCCeEEccce
Confidence 9999999999999999988 88899999874
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=431.62 Aligned_cols=379 Identities=22% Similarity=0.284 Sum_probs=303.8
Q ss_pred HHHHHHHH-cCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeCC
Q 009160 63 LFEQSCKE-HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAIFADT 140 (541)
Q Consensus 63 ~~~~~a~~-~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~n 140 (541)
.+++..+. .+|+.|+++.. . .+..+.+||+||.+.++++|+.|++ .|+ +||+|+|++|+
T Consensus 14 ~~dr~~~~~~~~~~aii~~~------------e------~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~ 74 (528)
T COG0365 14 ALDRHLEADRPDDTAIIFDG------------E------DGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPN 74 (528)
T ss_pred hhhhhhhccCCCceEEEEEc------------C------CCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCC
Confidence 45666553 46899999842 1 1112689999999999999999987 578 99999999999
Q ss_pred cHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhc--CCC-CccEEEEecCCCccccc
Q 009160 141 RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSG--QLD-TVKHVICMDANIPSAVS 217 (541)
Q Consensus 141 s~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~-~~~~ii~~~~~~~~~~~ 217 (541)
.+|.++++|||++.|++.+|+.+.++++++++.+++++++++|+++......+.... ... .+..++..+..
T Consensus 75 ~pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~------ 148 (528)
T COG0365 75 SPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRL------ 148 (528)
T ss_pred CHHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccc------
Confidence 999999999999999999999999999999999999999999999877654332211 000 00002322211
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh-hCCCCCCCcEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-IVPDLGSKDVYL 296 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~~~~~~d~~l 296 (541)
. ..|+++...... ..++.+...+|+++|+|||||||.||||+++|+.++........ .+ .+.++|+++
T Consensus 149 ------~---~~~~~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~-~~~~~Dv~w 217 (528)
T COG0365 149 ------G---LWYDEAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG-DLLPGDRFW 217 (528)
T ss_pred ------c---ccHHHHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh-CCCCCCEEE
Confidence 1 456666543322 23344588999999999999999999999999988777766554 45 777999999
Q ss_pred EccChHHHHHHHH-HHHHhhcCceEEe--CC----cccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 297 AYLPLAHVLELVA-ENLIAGVGSAIGY--GT----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 297 ~~~pl~h~~~~~~-~~~~l~~G~~v~~--~~----~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+..+..|+.+.+. ++.+|..|+++++ +. |.++++. ++++++|+++..|+.+++|.+...
T Consensus 218 ~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~-----------ie~~~vt~~~tsPT~~R~l~~~g~--- 283 (528)
T COG0365 218 NSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEA-----------LEKYKVTIFGTSPTFLRRLMKLGL--- 283 (528)
T ss_pred eCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHH-----------HHHhCCceEeeCHHHHHHHHhcCC---
Confidence 9999999999998 7889999999987 22 4556666 999999999999999999987421
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcce
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG 449 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~ 449 (541)
.+...+++||.+.++||||+++.++++.+.+|++|.
T Consensus 284 --------------------------------------------~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~ 319 (528)
T COG0365 284 --------------------------------------------GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWIL 319 (528)
T ss_pred --------------------------------------------cccccchhheeeeccCCCCCHHHHHHHHHHhCCCEe
Confidence 111222489999999999999999999999999999
Q ss_pred eccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC--CcccccCCCchhhHhhh
Q 009160 450 QGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP--NVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~--~v~~GY~~~~~~t~~~f 527 (541)
+.||+||++++.....+ +.++++.|+|+||+++.|+| ++|+..+ +++ |+|+|+.+ ++++|||+||+.+.++|
T Consensus 320 d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvd-d~g~~~~---~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y 393 (528)
T COG0365 320 DIYGQTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVD-DEGNPVP---PGV-GELVVRLPWPGMALTYWNDPERYKEAY 393 (528)
T ss_pred ccccccccCccccCCCC-CcCCCCCCCCCCCceeEEEC-CCCCcCC---CCc-eEEEEeCCCchhhhhhhCCHHHHHHHH
Confidence 99999999965555545 55667779999999999999 6677644 667 99999987 99999999999988876
Q ss_pred -----------ccCCCceEEccccC
Q 009160 528 -----------KVMLDRFMLMVALR 541 (541)
Q Consensus 528 -----------~~d~dGw~~~~~~~ 541 (541)
.+|+||+||+.||.
T Consensus 394 ~~~~y~tGD~~~~DedGy~~i~GR~ 418 (528)
T COG0365 394 FGRWYRTGDWAERDEDGYFWLHGRS 418 (528)
T ss_pred hhceeecCceeEEccCCCEEEEeec
Confidence 67899999999883
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-52 Score=450.06 Aligned_cols=414 Identities=23% Similarity=0.268 Sum_probs=316.8
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+.|++++|.+.++++|+++|+.+... ++. ....+++||+||.++++++|+.|+++|+++||+|++
T Consensus 24 ~~t~~~~l~~~a~~~p~~~Al~~~~~---------~~~------~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i 88 (632)
T PRK07529 24 PASTYELLSRAAARHPDAPALSFLLD---------ADP------LDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAF 88 (632)
T ss_pred CCCHHHHHHHHHHHCCCCceEEeecc---------cCC------CCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986321 111 112358999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc-----hhHHHHhhcCCCCccEEEEecCC
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
+++|+++++++++||+++| +++|+++.++++++.+++++++++++|+++.. .+++.......+.++.++.++..
T Consensus 89 ~~~n~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 167 (632)
T PRK07529 89 LLPNLPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLA 167 (632)
T ss_pred ECCCCHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCc
Confidence 9999999999999999999 56999999999999999999999999998643 24454555566777777776643
Q ss_pred Cccc--cccc----cccCCeEEeeHHHHHhcccCCCC-CCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh
Q 009160 212 IPSA--VSSV----EQSGRWKITSFADVQILGRENPV-DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284 (541)
Q Consensus 212 ~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~ 284 (541)
.... .... .......+.++.+.......... ......++++++|+|||||||.||||++||+++++.......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~ 247 (632)
T PRK07529 168 RYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGAL 247 (632)
T ss_pred ccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHH
Confidence 2100 0000 00011234456655443322211 123346799999999999999999999999999998877776
Q ss_pred hCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 285 IVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 285 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
.+ .+.++|++++.+|++|.++... .+.++..|+++++.++..+.+.. ....++..++++++|++.++|+++..+.+
T Consensus 248 ~~-~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~--~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 324 (632)
T PRK07529 248 LL-GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG--VIANFWKIVERYRINFLSGVPTVYAALLQ 324 (632)
T ss_pred hc-CCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcch--HHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 66 7889999999999999999876 67789999999996654332110 01112233899999999999999998875
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
..... ...+++|.+++||+++++++.+.+++.
T Consensus 325 ~~~~~------------------------------------------------~~~~slr~v~~gg~~l~~~l~~~~~~~ 356 (632)
T PRK07529 325 VPVDG------------------------------------------------HDISSLRYALCGAAPLPVEVFRRFEAA 356 (632)
T ss_pred CcccC------------------------------------------------CCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 31100 001389999999999999999999999
Q ss_pred hCCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEec-CCCCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDW-PEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~-~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
+|+++++.||+||++.+++..... ..+.+++|.|+|+++++|++. +++.+..+++.|+.|||+|+|++++.||++++
T Consensus 357 ~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~- 435 (632)
T PRK07529 357 TGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA- 435 (632)
T ss_pred hCCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-
Confidence 999999999999998776655443 236789999999999999743 34544445678999999999999999999865
Q ss_pred hhHhhhccCCCceEEcccc
Q 009160 522 KTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~~ 540 (541)
.+.+.| ..+|||+|+|+
T Consensus 436 ~~~~~~--~~~gw~~TGDl 452 (632)
T PRK07529 436 HNKGLW--LEDGWLNTGDL 452 (632)
T ss_pred cccccc--cCCCceEcCcE
Confidence 455666 56788888774
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-52 Score=444.36 Aligned_cols=383 Identities=21% Similarity=0.256 Sum_probs=299.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.+.|.+.++++|++.|+.+. ++ +.+||+||.++++++|+.|.+ .+||+|+|
T Consensus 18 ~~~~~~~~~~~~~~~p~~~a~~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~---~~gd~Val 72 (539)
T PRK06334 18 GKTVLESFLKLCSEMTTATVCWDE-----------QL-----------GKLSYNQVRKAVIALATKVSK---YPDQHIGI 72 (539)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC-----------CC-----------CcccHHHHHHHHHHHHHHHhh---ccCCeEEE
Confidence 368999999999999999998652 21 269999999999999999987 38999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcC-CCCccEEEEecCCCccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ-LDTVKHVICMDANIPSA 215 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~ 215 (541)
+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+....+.+.... ......++++++....
T Consensus 73 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 151 (539)
T PRK06334 73 MMPASAGAYIAYFATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE- 151 (539)
T ss_pred EcCCchHHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh-
Confidence 99999999999999999999999999999999999999999999999998766655543321 1111234444321100
Q ss_pred cccccccCCeEEeeHHHHHhccc----C-----CCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC
Q 009160 216 VSSVEQSGRWKITSFADVQILGR----E-----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 286 (541)
..+.+...... . .........++++++|+|||||||.||||++||++++.........+
T Consensus 152 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 219 (539)
T PRK06334 152 ------------LSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF 219 (539)
T ss_pred ------------ccHHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc
Confidence 00111000000 0 00112245679999999999999999999999999998887777777
Q ss_pred CCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe----CCcccccccchhhhcCcccccccccceEEeecHHHHHHH
Q 009160 287 PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV 361 (541)
Q Consensus 287 ~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 361 (541)
.++++|++++++|++|.+++.. .+.++..|+++++ +++..+++. ++++++|+++++|+++..+
T Consensus 220 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l 287 (539)
T PRK06334 220 -SPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM-----------IDEAKVTFLGSTPVFFDYI 287 (539)
T ss_pred -CCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHHH
Confidence 7889999999999999999875 6778999999987 345556666 9999999999999999998
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHH
Q 009160 362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN 441 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~ 441 (541)
++....... ..++||.+++||+++++++.++++
T Consensus 288 ~~~~~~~~~-----------------------------------------------~~~~lr~i~~gG~~l~~~~~~~~~ 320 (539)
T PRK06334 288 LKTAKKQES-----------------------------------------------CLPSLRFVVIGGDAFKDSLYQEAL 320 (539)
T ss_pred HHhhhhccc-----------------------------------------------ccccccEEEECCccCCHHHHHHHH
Confidence 764321100 113899999999999999999999
Q ss_pred HHh-CCcceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCC
Q 009160 442 ICL-GAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (541)
Q Consensus 442 ~~~-g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~ 519 (541)
+.+ ++.+++.||+||++.+++...... ...+++|+|+++++++|+|.+++..+ ++|+.|||+|+|++++.|||++
T Consensus 321 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~---~~g~~Gel~v~g~~~~~GY~~~ 397 (539)
T PRK06334 321 KTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPV---SSGETGLVLTRGTSLFSGYLGE 397 (539)
T ss_pred HHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccC---CCCceEEEEEecCcccccccCC
Confidence 988 689999999999987766544332 24578999999999999994445544 4788999999999999999999
Q ss_pred chhhHhhhccCCCceEEcccc
Q 009160 520 EEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++.+.... .+.+|||+|+|+
T Consensus 398 ~~~~~~~~-~~~~~w~~TGD~ 417 (539)
T PRK06334 398 DFGQGFVE-LGGETWYVTGDL 417 (539)
T ss_pred ccccccee-eCCceeEECCCE
Confidence 98764321 245788888874
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-52 Score=431.26 Aligned_cols=378 Identities=33% Similarity=0.481 Sum_probs=296.0
Q ss_pred HHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH
Q 009160 64 FEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE 143 (541)
Q Consensus 64 ~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e 143 (541)
|+++|+++||++|+++ + ++ +++||+|+.++++++|..|.+.|+++|++|+++++|+++
T Consensus 1 f~~~a~~~pd~~a~~~-~----------~~-----------~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~ 58 (417)
T PF00501_consen 1 FERQAQRYPDRIALID-D----------EG-----------RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIE 58 (417)
T ss_dssp HHHHHHHSTTSEEEEE-T----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHH
T ss_pred ChhHHhhCCCceEEEE-C----------CC-----------EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccce
Confidence 7899999999999986 1 22 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEE----CccchhHHHHhhcCCCCccEEEEecCCCccccccc
Q 009160 144 WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC----GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSV 219 (541)
Q Consensus 144 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 219 (541)
++++++||+++|++++|++|.++.+++.+++++++++++|+ +......+............++.++..........
T Consensus 59 ~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (417)
T PF00501_consen 59 FVVAFLACLRAGAIPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEAL 138 (417)
T ss_dssp HHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHH
T ss_pred eeeeecccccccccccccccccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999997 33223334444444444556666654332110000
Q ss_pred cccCCeEEeeHHHHHhcccCCCCCCCC-CCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHH--hhCCCCCCCcEEE
Q 009160 220 EQSGRWKITSFADVQILGRENPVDADY-PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM--TIVPDLGSKDVYL 296 (541)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~~d~~l 296 (541)
. .... ..... .. ..++++++++|||||||.||+|.++|+++++.+.... ..+ +++ |+++
T Consensus 139 ~---------~~~~---~~~~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~l 200 (417)
T PF00501_consen 139 K---------SASL---SDEPQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRIL 200 (417)
T ss_dssp H---------HHHH---CHCSH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEEE
T ss_pred c---------cccc---ccccc---cCCCCccceeEeecccccccccccccccccccccccccccccccc-ccC--ceEE
Confidence 0 0000 00000 00 0569999999999999999999999999999988764 223 334 6999
Q ss_pred EccChHHHHHH-HHHHHHhhcCceEEeCCccc------ccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 297 AYLPLAHVLEL-VAENLIAGVGSAIGYGTPLT------LTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 297 ~~~pl~h~~~~-~~~~~~l~~G~~v~~~~~~~------l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+++|++|.+++ ..++.++..|+++++.+... +.+. +++++||+++++|+++..+.+.....
T Consensus 201 ~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~l~~l~~~~~~~- 268 (417)
T PF00501_consen 201 SFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLEL-----------ISRYKPTILFAVPSMLEALLQSPEEK- 268 (417)
T ss_dssp ESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHH-----------HHHHTESEEEEEHHHHHHHHHHHHTT-
T ss_pred eeccccccccccccccccccccccccccccccccccccchhc-----------cccccccccccccccccccccccccc-
Confidence 99999999999 66889999999999955433 3444 99999999999999999998732211
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC-cc
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA-PI 448 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v 448 (541)
... +....+++|.+++||+++++++.+++++.++. ++
T Consensus 269 ~~~------------------------------------------~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i 306 (417)
T PF00501_consen 269 TKI------------------------------------------SKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPI 306 (417)
T ss_dssp HHG------------------------------------------TTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEE
T ss_pred ccc------------------------------------------cccccccccccccccccCChhhccccccccccccc
Confidence 000 00011379999999999999999999999987 99
Q ss_pred eeccCcccccccccccC--CCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhh
Q 009160 449 GQGYGLTETCAGGTFSE--VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~--~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~ 526 (541)
++.||+||++.+++... ....+.+++|.|+|+++++|+|.++++.++ +|+.|||+|+|++++.||+++|+.|++.
T Consensus 307 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~---~g~~Gei~i~~~~~~~gy~~~~~~~~~~ 383 (417)
T PF00501_consen 307 INLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLP---PGEPGEIVIRGPNVFSGYYNDPELTAEA 383 (417)
T ss_dssp EEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBES---TTSEEEEEEESTTSBSEETTBHHHHHHH
T ss_pred eecccccccceeeeccccccccccccccccccccccccccccccccccc---ccccccccccCCccceeeeccccccccc
Confidence 99999999999887553 223467899999999999999955587765 7889999999999999999999999999
Q ss_pred hccCCCceEEcccc
Q 009160 527 YKVMLDRFMLMVAL 540 (541)
Q Consensus 527 f~~d~dGw~~~~~~ 540 (541)
| +++|||+|+|+
T Consensus 384 ~--~~~~~~~TGD~ 395 (417)
T PF00501_consen 384 F--IDDGWYRTGDL 395 (417)
T ss_dssp E--ETTSEEEEEEE
T ss_pred c--ccccceecceE
Confidence 9 66789999885
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=441.93 Aligned_cols=381 Identities=19% Similarity=0.226 Sum_probs=307.5
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|+++++++|+++|+.+ +++ .+||+||.++++++|+.|.+.|+++|++|+++
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~ 105 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALID------------ERG-----------TLTYAELDEQSNALARGLLALGVRAGDGVAVL 105 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEE------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3899999999999999999985 333 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+.+.++....+.+..++...+....
T Consensus 106 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 182 (549)
T PRK07788 106 ARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEP--- 182 (549)
T ss_pred cCCCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCcccc---
Confidence 99999999999999999999999999999999999999999999999988776665554444444443332221110
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
......+++++...... .+.+..+++.++++|||||||.||||+++|+++.+.+......+ .+..+|++++
T Consensus 183 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~ 253 (549)
T PRK07788 183 -----SGSTDETLDDLIAGSST---APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTLL 253 (549)
T ss_pred -----CCcCcccHHHHhcCCCC---CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEEE
Confidence 11233456776543222 12233457889999999999999999999999999888877777 7889999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG 374 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 374 (541)
.+|++|.+++...+.++..|+++++ +++..+++. +++++||+++++|+++..+.+........
T Consensus 254 ~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--- 319 (549)
T PRK07788 254 PAPMFHATGWAHLTLAMALGSTVVLRRRFDPEATLED-----------IAKHKATALVVVPVMLSRILDLGPEVLAK--- 319 (549)
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEEHHHHHHHHHhCcccccCC---
Confidence 9999999999888888999999988 566677776 99999999999999999887643210000
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCc
Q 009160 375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454 (541)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~ 454 (541)
...+++|.+++||+++++++.+++++.+++.++|.||+
T Consensus 320 ------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~ 357 (549)
T PRK07788 320 ------------------------------------------YDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGS 357 (549)
T ss_pred ------------------------------------------CCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCc
Confidence 00138999999999999999999999999999999999
Q ss_pred ccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCc
Q 009160 455 TETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDR 533 (541)
Q Consensus 455 TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dG 533 (541)
||++..+.....+ ...++++|+|+++++++|+| ++++.++ .|+.|||+|+|+.++.||+++++. + ..||
T Consensus 358 TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~--~----~~~g 427 (549)
T PRK07788 358 TEVAFATIATPEDLAEAPGTVGRPPKGVTVKILD-ENGNEVP---RGVVGRIFVGNGFPFEGYTDGRDK--Q----IIDG 427 (549)
T ss_pred chhchhhccChhhhhhcCCCcccCCCCcEEEEEC-CCcCCCC---CCCeEEEEEeCCCccccccCCCcc--c----ccCC
Confidence 9987655433222 23568999999999999999 6776654 688999999999999999998865 1 1345
Q ss_pred eEEccc
Q 009160 534 FMLMVA 539 (541)
Q Consensus 534 w~~~~~ 539 (541)
||+|+|
T Consensus 428 ~~~TGD 433 (549)
T PRK07788 428 LLSSGD 433 (549)
T ss_pred ceecCc
Confidence 666655
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=445.88 Aligned_cols=407 Identities=18% Similarity=0.165 Sum_probs=300.3
Q ss_pred CCCHHHHHHHHHHH--cCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 57 ISTLAELFEQSCKE--HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 57 ~~tl~~~~~~~a~~--~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
.++..++++++++. +|+++|+++.. +++ +..+.+||+||.++++++|++|+++|+++||+|
T Consensus 58 ~n~~~~~l~~~~~~~~~~~~~A~~~~~---------~~~--------~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV 120 (647)
T PTZ00237 58 LNTCYNVLDIHVKNPLKRDQDALIYEC---------PYL--------KKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNV 120 (647)
T ss_pred eeHHHHHHHHhhcccCCCCceEEEEEc---------CCC--------CceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 44578888888765 79999998731 011 123579999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc---------chhHHHHhhcCCC-CccE
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK---------ELKKLVDLSGQLD-TVKH 204 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~-~~~~ 204 (541)
+++++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++. ..+.+.+...... ...+
T Consensus 121 ~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (647)
T PTZ00237 121 LIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSN 200 (647)
T ss_pred EEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCE
Confidence 99999999999999999999999999999999999999999999999999752 2223333222111 1335
Q ss_pred EEEecCCCc---ccccccccc-CCeEEeeHHHHHhcccC---CC-CCCCCCCCCCeEEEEeccCCCCCccEEEechHH-H
Q 009160 205 VICMDANIP---SAVSSVEQS-GRWKITSFADVQILGRE---NP-VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGN-V 275 (541)
Q Consensus 205 ii~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~-l 275 (541)
++....... ......... .......|+++...... .+ .......++|+++|+|||||||.||||+++|++ +
T Consensus 201 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l 280 (647)
T PTZ00237 201 VITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHL 280 (647)
T ss_pred EEEEEcCCcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHH
Confidence 554421110 000000000 00112446666543211 11 223455789999999999999999999999998 4
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCC---------cccccccchhhhcCcccccccc
Q 009160 276 LATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT---------PLTLTDTSSKIKKGTQGDASVL 346 (541)
Q Consensus 276 ~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~---------~~~l~~~~~~~~~~~~~~i~~~ 346 (541)
++........+ ....+|++++..|++|+.+...++.+|+.|+++++.+ +..+++. ++++
T Consensus 281 ~~~~~~~~~~~-~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~-----------i~~~ 348 (647)
T PTZ00237 281 VGLKYYWRSII-EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNT-----------IEKH 348 (647)
T ss_pred HHHHHHHHHhc-CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHH-----------HHHh
Confidence 44333333334 6777899999999999877666788999999998832 2335555 9999
Q ss_pred cceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEE
Q 009160 347 RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426 (541)
Q Consensus 347 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~ 426 (541)
++|+++++|++++.+.+........ .+....++||.++
T Consensus 349 ~vt~~~~~P~~~~~l~~~~~~~~~~------------------------------------------~~~~~l~~Lr~i~ 386 (647)
T PTZ00237 349 KVTHTLTLPKTIRYLIKTDPEATII------------------------------------------RSKYDLSNLKEIW 386 (647)
T ss_pred CeEEEEeCHHHHHHHHhhCcccccc------------------------------------------ccccCcchheEEE
Confidence 9999999999999887632110000 0000114899999
Q ss_pred EccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEE
Q 009160 427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEI 505 (541)
Q Consensus 427 ~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi 505 (541)
+||+++++++.+++++.+|+++++.||+||+++..+...... ...+++|+|+|+++++|+| ++|+.++ .|+.|||
T Consensus 387 ~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~---~ge~GEl 462 (647)
T PTZ00237 387 CGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELN---VNEIGEV 462 (647)
T ss_pred ecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCC---CCCceEE
Confidence 999999999999999999999999999999986554332222 2348999999999999999 6777654 7789999
Q ss_pred EEccC---CcccccCCCchhhHhhhccCC-CceEEcccc
Q 009160 506 VIAGP---NVTVGYFKNEEKTKEVYKVML-DRFMLMVAL 540 (541)
Q Consensus 506 ~v~g~---~v~~GY~~~~~~t~~~f~~d~-dGw~~~~~~ 540 (541)
+|+|| +++.|||++++.|++.| +. +|||+|+|+
T Consensus 463 ~v~~p~~p~~~~gy~~~~~~~~~~f--~~~~g~~~TGDl 499 (647)
T PTZ00237 463 AFKLPMPPSFATTFYKNDEKFKQLF--SKFPGYYNSGDL 499 (647)
T ss_pred EEeccCCchhhCceeCCHHHHHHHH--hCCCCEEECCcE
Confidence 99986 78999999999999877 43 788888774
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=443.98 Aligned_cols=400 Identities=20% Similarity=0.235 Sum_probs=310.8
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
+..+++|+++++++|+++|+.+.. + . .++.+.+||+||.++++++|++|++.|+++||+|+++
T Consensus 57 n~~~~~l~~~~~~~p~~~Al~~~~----------~-~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 119 (625)
T TIGR02188 57 NVSYNCVDRHLEARPDKVAIIWEG----------D-E------PGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIY 119 (625)
T ss_pred EHHHHHHHHhhccCCCCeEEEEEc----------C-C------CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 356888888889999999998731 1 0 1334689999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhhcCCC-CccEEEE
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLD-TVKHVIC 207 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~~~ii~ 207 (541)
++|+++++++++||+++|++++|+++.++++++.+++++++++++|+++... +.+.+.....+ .++.++.
T Consensus 120 ~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (625)
T TIGR02188 120 MPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLV 199 (625)
T ss_pred CCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEE
Confidence 9999999999999999999999999999999999999999999999987532 23333334444 5666776
Q ss_pred ecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh-hC
Q 009160 208 MDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-IV 286 (541)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~ 286 (541)
++...... .. .......++++..... ....+....++++++|+|||||||.||||+++|++++........ .+
T Consensus 200 ~~~~~~~~-~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~ 273 (625)
T TIGR02188 200 VRRTGNPV-PW----VEGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF 273 (625)
T ss_pred EcCCCCCc-Cc----cccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc
Confidence 65432110 00 0011234666554321 222334567899999999999999999999999998765544333 34
Q ss_pred CCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHHH
Q 009160 287 PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAIL 358 (541)
Q Consensus 287 ~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~ 358 (541)
+++++|++++.+|++|+.+... ++.+|..|+++++. ++..+++. ++++++|++.++|+++
T Consensus 274 -~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~ 341 (625)
T TIGR02188 274 -DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEI-----------IEKHKVTIFYTAPTAI 341 (625)
T ss_pred -CCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHH-----------HHHhCCeEEEeCHHHH
Confidence 7889999999999999988654 77889999999872 34555555 9999999999999999
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHH
Q 009160 359 DRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQR 438 (541)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~ 438 (541)
+.+.+...... +....++||.+++||+++++++.+
T Consensus 342 ~~l~~~~~~~~---------------------------------------------~~~~l~~lr~i~~~G~~l~~~~~~ 376 (625)
T TIGR02188 342 RALMRLGDEWV---------------------------------------------KKHDLSSLRLLGSVGEPINPEAWM 376 (625)
T ss_pred HHHHhcCCccc---------------------------------------------ccCCccceeEEEEecCCCCHHHHH
Confidence 98876321100 001124899999999999999999
Q ss_pred HHHHHhC---CcceeccCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc--CC
Q 009160 439 FINICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PN 511 (541)
Q Consensus 439 ~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g--~~ 511 (541)
++++.++ +++++.||+||+++.++...+. ..+++++|+|+++++++|+| ++|+.++ ++|+.|||+|+| |+
T Consensus 377 ~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~--~~g~~GeL~v~~p~p~ 453 (625)
T TIGR02188 377 WYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE--GPGEGGYLVIKQPWPG 453 (625)
T ss_pred HHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC--CCCCeEEEEEccCCCc
Confidence 9999885 7899999999998765544332 34678999999999999999 7776543 267899999999 68
Q ss_pred cccccCCCchhhHhhhccCCCceEEcccc
Q 009160 512 VTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 512 v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+++|||++++.+.+.++...+|||+|+|+
T Consensus 454 ~~~gy~~~~~~~~~~~~~~~~g~~~TGDl 482 (625)
T TIGR02188 454 MLRTIYGDHERFVDTYFSPFPGYYFTGDG 482 (625)
T ss_pred ccccccCChHHHHHHHhccCCCEEECCce
Confidence 99999999999988874445788888774
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=442.27 Aligned_cols=402 Identities=17% Similarity=0.194 Sum_probs=300.1
Q ss_pred CHHHHHHHHHH-HcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 59 TLAELFEQSCK-EHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 59 tl~~~~~~~a~-~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
...++|+++++ .+|+++|+++.. + . .+..+.+||+||.++++++|++|++.|+++||+|+++
T Consensus 89 ~~~~~l~~~~~~~~~~~~Al~~~~----------~-~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~ 151 (666)
T PLN02654 89 ICYNCLDRNVEAGNGDKIAIYWEG----------N-E------PGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIY 151 (666)
T ss_pred HHHHHHHHhhccCCCCCEEEEEEc----------C-C------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 34778887776 489999998621 0 0 1234589999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchh---------HHHHhhcCC----CCccE
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK---------KLVDLSGQL----DTVKH 204 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~----~~~~~ 204 (541)
++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++.... .+.+..... .....
T Consensus 152 ~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 231 (666)
T PLN02654 152 LPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGI 231 (666)
T ss_pred cCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccE
Confidence 99999999999999999999999999999999999999999999999876431 111111111 11122
Q ss_pred EEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHH-HHHH
Q 009160 205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV-SAVM 283 (541)
Q Consensus 205 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~~~ 283 (541)
++..+....... ............|+++.... ....+.....++|+++|+|||||||.||||+++|++++... ....
T Consensus 232 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~ 309 (666)
T PLN02654 232 CLTYENQLAMKR-EDTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFK 309 (666)
T ss_pred EEEecccccccc-cccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHH
Confidence 232222110000 00000000122355554321 11122334578999999999999999999999999986543 4445
Q ss_pred hhCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecH
Q 009160 284 TIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVP 355 (541)
Q Consensus 284 ~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P 355 (541)
..+ +++++|++++.+|++|+.+... ++.+|+.|+++++. ++..+++. ++++++|+++++|
T Consensus 310 ~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P 377 (666)
T PLN02654 310 YAF-DYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDI-----------VDKYKVTIFYTAP 377 (666)
T ss_pred Hhc-CCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH-----------HHHhCCeEEEeCH
Confidence 556 8899999999999999998765 67789999999882 34445555 9999999999999
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHH
Q 009160 356 AILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSAD 435 (541)
Q Consensus 356 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~ 435 (541)
+++..+.+...+... ....++||.++++|++++++
T Consensus 378 ~~~~~l~~~~~~~~~---------------------------------------------~~~l~~Lr~i~~~Ge~l~~~ 412 (666)
T PLN02654 378 TLVRSLMRDGDEYVT---------------------------------------------RHSRKSLRVLGSVGEPINPS 412 (666)
T ss_pred HHHHHHHhhCccccc---------------------------------------------cCChhheeEEEEecCCCCHH
Confidence 999988763211000 00113899999999999999
Q ss_pred HHHHHHHHhC---CcceeccCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc-
Q 009160 436 TQRFINICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG- 509 (541)
Q Consensus 436 ~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g- 509 (541)
+.+++.+.+| +++.+.||+||+++......+. ..+++++|+|++|++++|+| ++|+.++ .++.|||+|++
T Consensus 413 ~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~---~~~~Gel~v~~~ 488 (666)
T PLN02654 413 AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIE---GECSGYLCVKKS 488 (666)
T ss_pred HHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCC---CCCceEEEEcCC
Confidence 9999999987 7899999999998766544332 34678999999999999999 7777653 66789999999
Q ss_pred -CCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 510 -PNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 510 -~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|++++|||+|++.+++.|+...+|||+|+|+
T Consensus 489 ~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~ 520 (666)
T PLN02654 489 WPGAFRTLYGDHERYETTYFKPFAGYYFSGDG 520 (666)
T ss_pred CchhhhhhcCChHHHHHhhhhcCCCEEEeCce
Confidence 7899999999999988873334778887764
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=440.53 Aligned_cols=397 Identities=21% Similarity=0.250 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeC
Q 009160 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFAD 139 (541)
Q Consensus 60 l~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 139 (541)
..++|+++++++|+++|+.+.. +++ ++.+.+||+||.++++++|++|++.|+++||+|+++++
T Consensus 69 ~~~~l~~~~~~~p~~~Al~~~~---------~~~--------~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~ 131 (637)
T PRK00174 69 SYNCLDRHLKTRGDKVAIIWEG---------DDP--------GDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMP 131 (637)
T ss_pred HHHHHHHhhccCCCCeEEEEEC---------CCC--------CceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcC
Confidence 4678888889999999998731 011 13457999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhhcCCCCccEEEEecC
Q 009160 140 TRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLDTVKHVICMDA 210 (541)
Q Consensus 140 ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~ii~~~~ 210 (541)
|+++++++++||+++|++++|+++.++++++.+++++++++++|+++... +.+.+....++.++.++.++.
T Consensus 132 n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (637)
T PRK00174 132 MIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRR 211 (637)
T ss_pred CCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcC
Confidence 99999999999999999999999999999999999999999999986542 233333334556667776654
Q ss_pred CCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHH-HhhCCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV-MTIVPDL 289 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~ 289 (541)
..... .. .......++++.... ....++....++|+++|+|||||||.||||+++|++++...... ...+ ++
T Consensus 212 ~~~~~-~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-~~ 284 (637)
T PRK00174 212 TGGDV-DW----VEGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-DY 284 (637)
T ss_pred CCCCc-Cc----CCCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-CC
Confidence 32110 00 001123456665422 22223345667899999999999999999999999987655443 3335 78
Q ss_pred CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV 361 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 361 (541)
+++|++++.+|++|+.+... ++.+|+.|+++++. ++..+++. ++++++|++.++|++++.+
T Consensus 285 ~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l 353 (637)
T PRK00174 285 KDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEV-----------IDKHKVTIFYTAPTAIRAL 353 (637)
T ss_pred CCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHH-----------HHhcCCeEEeecHHHHHHH
Confidence 88999999999999988764 77789999999872 34445555 9999999999999999988
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHH
Q 009160 362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN 441 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~ 441 (541)
.+...... +....++||.+++||+++++++.+++.
T Consensus 354 ~~~~~~~~---------------------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~ 388 (637)
T PRK00174 354 MKEGDEHP---------------------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYY 388 (637)
T ss_pred HhcCCccc---------------------------------------------ccCCccceeEEEEeCCCCCHHHHHHHH
Confidence 76321100 000113899999999999999999999
Q ss_pred HHhC---CcceeccCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc--CCccc
Q 009160 442 ICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTV 514 (541)
Q Consensus 442 ~~~g---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g--~~v~~ 514 (541)
+.++ +++++.||+||+++.++...+. ..+.+++|+|++|++++|+| ++|+.++ .|+.|||+|+| |++++
T Consensus 389 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~---~g~~Gel~v~g~~p~~~~ 464 (637)
T PRK00174 389 KVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLE---GGEGGNLVIKDPWPGMMR 464 (637)
T ss_pred HHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCC---CCCcEEEEEcCCCCcccc
Confidence 8886 7899999999998766543332 23568999999999999999 7776654 78899999999 69999
Q ss_pred ccCCCchhhHhhhccCCCceEEcccc
Q 009160 515 GYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 515 GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|||++++.+.+.++.+.+|||+|+|+
T Consensus 465 gy~~~~~~~~~~~~~~~~g~~~TGDl 490 (637)
T PRK00174 465 TIYGDHERFVKTYFSTFKGMYFTGDG 490 (637)
T ss_pred cccCCHHHHHHhhhcCCCCEEECCce
Confidence 99999999988875566889888874
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=432.70 Aligned_cols=386 Identities=22% Similarity=0.285 Sum_probs=309.9
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|++.++.+|+++|+.+.+ ++ .++++.+||.||.++++++|++|.+.|+++|++|++
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~~----------~~-------~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val 85 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAVR----------LG-------TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSC 85 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEecC----------CC-------ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4689999999999999999998631 11 133468999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc-----hhHHHHhhcCCCCccEEEEecCC
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++++++.. .+.+.++...++.++.++.++..
T Consensus 86 ~~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (547)
T PRK13295 86 QLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGD 165 (547)
T ss_pred ECCCChHHHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCC
Confidence 9999999999999999999999999999999999999999999999998754 23344444455666677766542
Q ss_pred CccccccccccCCeEEeeHHHHHhccc-------CCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGR-------ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~ 284 (541)
.. .++.++..... ..........++++++|+|||||||.||||+++|++++..+.....
T Consensus 166 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~ 231 (547)
T PRK13295 166 GA--------------DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE 231 (547)
T ss_pred Cc--------------cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHH
Confidence 21 12333321110 0011123356789999999999999999999999999998888777
Q ss_pred hCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHH
Q 009160 285 IVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360 (541)
Q Consensus 285 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 360 (541)
.+ .+.++|++++.+|++|.+++.. ++.++..|+++++ .++..+.+. ++++++|++.++|.++..
T Consensus 232 ~~-~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~ 299 (547)
T PRK13295 232 RL-GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAEL-----------IRTEGVTFTMASTPFLTD 299 (547)
T ss_pred Hh-CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHH-----------HHHcCCcEEEecHHHHHH
Confidence 77 7889999999999999998766 7788999999988 455666666 999999999999999988
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHH
Q 009160 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440 (541)
Q Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~ 440 (541)
+......... ..+++|.+++||+++++++.+++
T Consensus 300 l~~~~~~~~~-----------------------------------------------~~~~l~~~~~~G~~l~~~~~~~~ 332 (547)
T PRK13295 300 LTRAVKESGR-----------------------------------------------PVSSLRTFLCAGAPIPGALVERA 332 (547)
T ss_pred HHhcccccCC-----------------------------------------------CcccceEEEEecCCCCHHHHHHH
Confidence 8753211100 11389999999999999999999
Q ss_pred HHHhCCcceeccCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCC
Q 009160 441 NICLGAPIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518 (541)
Q Consensus 441 ~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~ 518 (541)
++.+++++++.||+||++..++..... .....++|+|+++++++|+| ++++.. +.|+.|||+|+|++++.||++
T Consensus 333 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gY~~ 408 (547)
T PRK13295 333 RAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPL---PAGQIGRLQVRGCSNFGGYLK 408 (547)
T ss_pred HHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCC---CCCCCCeEEEEcCcccccccC
Confidence 999999999999999997765443322 12347899999999999999 666654 478899999999999999999
Q ss_pred CchhhHhhhccCCCceEEcccc
Q 009160 519 NEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 519 ~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+|+.|++. .||||+|+|+
T Consensus 409 ~~~~t~~~----~~g~~~TGD~ 426 (547)
T PRK13295 409 RPQLNGTD----ADGWFDTGDL 426 (547)
T ss_pred CccccccC----CCCCeecceE
Confidence 99988763 4678777764
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-50 Score=431.81 Aligned_cols=397 Identities=24% Similarity=0.363 Sum_probs=307.7
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERV 134 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V 134 (541)
...|+.++|++.++++|+++|+.. +++ .+||.||.++++++|++|.+ .|+++|++|
T Consensus 22 ~~~~~~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~gi~~gd~V 78 (562)
T PRK05677 22 EYPNIQAVLKQSCQRFADKPAFSN------------LGK-----------TLTYGELYKLSGAFAAWLQQHTDLKPGDRI 78 (562)
T ss_pred ccCcHHHHHHHHHHhCCCCeeEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 345899999999999999999985 444 79999999999999999997 599999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++|+++|+++++||+++|++++|+++..+.+++.+++++++++++|++.+....+.+..... ..+.++..+.....
T Consensus 79 ai~~~n~~~~~~~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 157 (562)
T PRK05677 79 AVQLPNVLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKT-GVKHVIVTEVADML 157 (562)
T ss_pred EEECCCCHHHHHHHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhcc-CcceeEEecccccc
Confidence 99999999999999999999999999999999999999999999999999887665554443322 33444443211100
Q ss_pred c---c---c-------c-ccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHH
Q 009160 215 A---V---S-------S-VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS 280 (541)
Q Consensus 215 ~---~---~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~ 280 (541)
. . . . ...........+.+....+...........++++++|+|||||||.||||+++|++++..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~ 237 (562)
T PRK05677 158 PPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANML 237 (562)
T ss_pred cchhhhhcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHH
Confidence 0 0 0 0 00000011233455444433333333445679999999999999999999999999988776
Q ss_pred HHHhhC-CCCC-CCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-C---CcccccccchhhhcCcccccccccceEEee
Q 009160 281 AVMTIV-PDLG-SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-G---TPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353 (541)
Q Consensus 281 ~~~~~~-~~~~-~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~ 353 (541)
.....+ ..+. ..+++++.+|++|.+++.. ++..+..|++.++ . ++..+++. ++++++|.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~ 306 (562)
T PRK05677 238 QCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKE-----------LGKWKFSGFVG 306 (562)
T ss_pred HHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHH-----------HHHcCceEEec
Confidence 555443 1233 3478899999999999865 5567778887665 2 33445555 99999999999
Q ss_pred cHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCC
Q 009160 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLS 433 (541)
Q Consensus 354 ~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~ 433 (541)
+|+++..+....... ....+++|.+++||++++
T Consensus 307 ~p~~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~v~~gG~~~~ 339 (562)
T PRK05677 307 LNTLFVALCNNEAFR-----------------------------------------------KLDFSALKLTLSGGMALQ 339 (562)
T ss_pred HHHHHHHHHhCcccc-----------------------------------------------cCChhhceEEEEcCccCC
Confidence 999998876521100 000138999999999999
Q ss_pred HHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcc
Q 009160 434 ADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVT 513 (541)
Q Consensus 434 ~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~ 513 (541)
+++.+.+++.+|+++++.||+||++..++........++++|+|+++++++|+| ++++.+ +.|+.|||+|+|++++
T Consensus 340 ~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~g~~~~ 415 (562)
T PRK05677 340 LATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVID-DDGNEL---PLGEVGELCVKGPQVM 415 (562)
T ss_pred HHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEEC-CCCCCC---CCCCCeEEEEecCccc
Confidence 999999999999999999999999877665554445668999999999999999 667654 4788999999999999
Q ss_pred cccCCCchhhHhhhccCCCceEEcccc
Q 009160 514 VGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 514 ~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
.||+++++.|++.| +.||||+|+|+
T Consensus 416 ~gY~~~~~~t~~~~--~~~g~~~TGDl 440 (562)
T PRK05677 416 KGYWQRPEATDEIL--DSDGWLKTGDI 440 (562)
T ss_pred hhhcCCchhhhhcc--CCCCcccccce
Confidence 99999999999999 78899999885
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=434.80 Aligned_cols=399 Identities=19% Similarity=0.241 Sum_probs=299.1
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
.++++|.++++.+|+++|+.+.+ .. .++.+.+||+||.++++++|++|+++|+++||+|++++
T Consensus 53 ~~~~~l~~~~~~~p~~~Al~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~ 115 (628)
T TIGR02316 53 LCHNALDRHLDERGEQLALVTVS-----------SE------TGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYM 115 (628)
T ss_pred HHHHHHHHHhCcCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 45788988888999999998631 00 12335799999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhhcCC-CCccEEEEe
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQL-DTVKHVICM 208 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~-~~~~~ii~~ 208 (541)
+|++|++++++||+++|++++|+++.++++++.+++++++++++|+++... +.+.+..... .....++.+
T Consensus 116 ~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 195 (628)
T TIGR02316 116 PMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLV 195 (628)
T ss_pred CCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999986431 2222222211 234566666
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHH-HHHHhhCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV-SAVMTIVP 287 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~~ 287 (541)
+...... .. ......+++++.........+.....++++++|+|||||||.||||+++|++++... ......+
T Consensus 196 ~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~- 269 (628)
T TIGR02316 196 DRGLAPM-RL----IPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF- 269 (628)
T ss_pred eCCCCCc-Cc----ccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-
Confidence 5421110 00 000123466655432222222233567999999999999999999999999986443 3344445
Q ss_pred CCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCC-------cccccccchhhhcCcccccccccceEEeecHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT-------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~-------~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 359 (541)
+++++|++++.+|++|+.+... ++.+|+.|+++++.+ +..+++. ++++++|+++++|++++
T Consensus 270 ~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~ 338 (628)
T TIGR02316 270 GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSI-----------VERYGVRTMFSAPTAIR 338 (628)
T ss_pred CCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHH-----------HHHhCCeEEEeCHHHHH
Confidence 7889999999999999998754 778899999998832 3344444 99999999999999998
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHH
Q 009160 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRF 439 (541)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~ 439 (541)
.+.+...... +....++||.+++||+++++++.++
T Consensus 339 ~l~~~~~~~~---------------------------------------------~~~~l~~lr~~~~gGe~l~~~~~~~ 373 (628)
T TIGR02316 339 VLKKQDAAWL---------------------------------------------RKHDLSSLHWLFLAGEPLDEPTAHW 373 (628)
T ss_pred HHHhcCCccc---------------------------------------------ccCCccceeEEEEecCCCCHHHHHH
Confidence 8765311000 0011148999999999999999999
Q ss_pred HHHHhCCcceeccCcccccccccccCCC----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC---Cc
Q 009160 440 INICLGAPIGQGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NV 512 (541)
Q Consensus 440 ~~~~~g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~---~v 512 (541)
+++.+|..+++.||+||++..++..... ..+.+++|+|+++++++|+|.++|+.++ .|+.|||+|+|| +.
T Consensus 374 ~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~---~g~~Gel~v~gp~~~g~ 450 (628)
T TIGR02316 374 ITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCG---PNEKGVLTVVPPLPPGC 450 (628)
T ss_pred HHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCC---CCCcEEEEEecCCCccc
Confidence 9999999999999999988544332221 2345899999999999999944676654 788999999998 57
Q ss_pred ccccCCCchhhHhhhcc-CCCceEEccc
Q 009160 513 TVGYFKNEEKTKEVYKV-MLDRFMLMVA 539 (541)
Q Consensus 513 ~~GY~~~~~~t~~~f~~-d~dGw~~~~~ 539 (541)
+.|||++++.+.+.++. ..+|||+|+|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~TGD 478 (628)
T TIGR02316 451 LSTVWGDDARFLKTYWSHFKRPLYSSFD 478 (628)
T ss_pred cccccCChHHHHHhhhhcCCCCEEECCc
Confidence 89999999888776411 1245555554
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=425.68 Aligned_cols=388 Identities=25% Similarity=0.306 Sum_probs=311.5
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 009160 53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE 132 (541)
Q Consensus 53 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 132 (541)
++++..++.+++.++++++|+++|+.+.+ +++ .+||.||.++++++|++|.+.|+++||
T Consensus 18 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~----------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~gd 76 (537)
T PLN02246 18 YIPNHLPLHDYCFERLSEFSDRPCLIDGA----------TGR-----------VYTYADVELLSRRVAAGLHKLGIRQGD 76 (537)
T ss_pred CCCCCCcHHHHHHHHHHhCCCCeEEEecC----------CCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34556789999999999999999997521 233 799999999999999999999999999
Q ss_pred EEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCC
Q 009160 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (541)
Q Consensus 133 ~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 212 (541)
+|+++++|+++|+++++||+++|++++|+++.++.+++..+++.++++++|++....+.+.+.... .. ..++.+++..
T Consensus 77 ~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~-~~~i~~~~~~ 154 (537)
T PLN02246 77 VVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED-DG-VTVVTIDDPP 154 (537)
T ss_pred EEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc-CC-ceEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999998877666554322 12 2455554322
Q ss_pred ccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh----hCCC
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT----IVPD 288 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~ 288 (541)
. ....+.++..... ...+.....++++++++|||||||.||||+++|++++..+..... .+ .
T Consensus 155 ~------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~ 220 (537)
T PLN02246 155 E------------GCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-Y 220 (537)
T ss_pred C------------CceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcccccc-C
Confidence 1 1133444433211 122233456899999999999999999999999999988766543 34 6
Q ss_pred CCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
+..+|++++.+|++|.+++.. ++.++..|+++++ .++..+++. ++++++|++.++|.++..+.+.
T Consensus 221 ~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~ 289 (537)
T PLN02246 221 FHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLEL-----------IQRHKVTIAPFVPPIVLAIAKS 289 (537)
T ss_pred CCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHH-----------HHHhCceEEEcchHHHHHHhcC
Confidence 789999999999999999866 5667999999999 445555555 9999999999999999887652
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~ 444 (541)
.... ....+++|.+++||+++++++.+++++.+
T Consensus 290 ~~~~-----------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~ 322 (537)
T PLN02246 290 PVVE-----------------------------------------------KYDLSSIRMVLSGAAPLGKELEDAFRAKL 322 (537)
T ss_pred cccc-----------------------------------------------ccCccceeEEEEecCcCCHHHHHHHHHHc
Confidence 1100 00013899999999999999999999988
Q ss_pred -CCcceeccCcccccccccccC-----CCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCC
Q 009160 445 -GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518 (541)
Q Consensus 445 -g~~v~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~ 518 (541)
++.+++.||+||++.+++... ....+++++|+|+++++++|+|+++++.+ +.|+.|||+|+|++++.||++
T Consensus 323 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~Gel~v~g~~~~~GY~~ 399 (537)
T PLN02246 323 PNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASL---PRNQPGEICIRGPQIMKGYLN 399 (537)
T ss_pred CCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcC---CCCCceEEEEECCchhccccC
Confidence 778999999999887654321 12235678999999999999995566654 478899999999999999999
Q ss_pred CchhhHhhhccCCCceEEcccc
Q 009160 519 NEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 519 ~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+++.|++.| +.+|||+|+|+
T Consensus 400 ~~~~~~~~~--~~~~~~~TGD~ 419 (537)
T PLN02246 400 DPEATANTI--DKDGWLHTGDI 419 (537)
T ss_pred Cchhhhhcc--cCCCCeeecce
Confidence 999999998 88999999874
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=424.30 Aligned_cols=389 Identities=26% Similarity=0.360 Sum_probs=323.4
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
++.++.+.|++.++.+|+++|+.+ +++ .+||+||.+++.++|+.|.+.|+++|++|+
T Consensus 3 ~~~~i~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~ 59 (513)
T PRK07656 3 EWMTLPELLARAARRFGDKEAYVF------------GDQ-----------RLTYAELNARVRRAAAALAALGIGKGDRVA 59 (513)
T ss_pred ccccHHHHHHHHHHHCCCCeEEEe------------CCC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 346899999999999999999986 444 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
++++|+++++++++||+++|++++|+++..+.+++.+++++++++++++++............++..+.++.........
T Consensus 60 l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (513)
T PRK07656 60 IWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP 139 (513)
T ss_pred EECCCChHHHHHHHHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCccccc
Confidence 99999999999999999999999999999999999999999999999999887766666555566666666654432211
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 295 (541)
......+|+++...... ........++++++|+|||||||.||+|.++|+++...+......+ .++++|++
T Consensus 140 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~ 210 (513)
T PRK07656 140 -------HTEKMKTFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRY 210 (513)
T ss_pred -------CccccccHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeE
Confidence 01123456776544322 1223456778999999999999999999999999999888877777 88999999
Q ss_pred EEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 296 LAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 296 l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
++.+|++|.+++.. ++.++..|+++++ .++..+++. ++++++|++.++|.++..+.+.......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~~~~- 278 (513)
T PRK07656 211 LAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRL-----------IETERITVLPGPPTMYNSLLQHPDRSAE- 278 (513)
T ss_pred EEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHH-----------HHHhCCeEEechHHHHHHHHcCCCcCCC-
Confidence 99999999999876 6778999999988 455556666 9999999999999999988764221100
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC-ccee
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA-PIGQ 450 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~ 450 (541)
..+++|.+++||+++++++.+.+++.+++ .+++
T Consensus 279 ----------------------------------------------~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~ 312 (513)
T PRK07656 279 ----------------------------------------------DLSSLRLAVTGAASMPVALLERFESELGVDIVLT 312 (513)
T ss_pred ----------------------------------------------CccceeeEEecCCCCCHHHHHHHHHHcCCCceEe
Confidence 01389999999999999999999999998 9999
Q ss_pred ccCcccccccccccCCCCC-C--CCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhh
Q 009160 451 GYGLTETCAGGTFSEVDDS-S--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~~-~--~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f 527 (541)
.||+||++++++....... . ++++|.|+++++++|+| ++++.+ +.|..|||+|+|+.++.||+++++.+.+.+
T Consensus 313 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~ 388 (513)
T PRK07656 313 GYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEV---PVGEVGELLVRGPNVMKGYYDDPEATAAAI 388 (513)
T ss_pred EEccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCC---CCCCceEEEEEcchhhhhhcCCHHHHhhhh
Confidence 9999999887765544322 2 58999999999999999 666654 477899999999999999999999999988
Q ss_pred ccCCCceEEcccc
Q 009160 528 KVMLDRFMLMVAL 540 (541)
Q Consensus 528 ~~d~dGw~~~~~~ 540 (541)
+.||||+|+|+
T Consensus 389 --~~~~~~~tGDl 399 (513)
T PRK07656 389 --DADGWLHTGDL 399 (513)
T ss_pred --ccCCceeccce
Confidence 66889888874
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=431.71 Aligned_cols=388 Identities=24% Similarity=0.298 Sum_probs=311.7
Q ss_pred CCHHHHHHHHHH-HcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 58 STLAELFEQSCK-EHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 58 ~tl~~~~~~~a~-~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+.+++++.++++ .+|+++|+.+. +.. ..+.+||+||.++++++|.+|.++|+++|++|++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~a~~~~-----------~~~--------~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i 103 (570)
T PRK04319 43 NIAYEAIDRHADGGRKDKVALRYL-----------DAS--------RKEKYTYKELKELSNKFANVLKELGVEKGDRVFI 103 (570)
T ss_pred eHHHHHHHHhhccCCCCceEEEEE-----------CCC--------CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 446788888877 58999999863 111 1247999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++++++.++++.++++++|++......... ..++.++.++.+++....
T Consensus 104 ~~~n~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-- 179 (570)
T PRK04319 104 FMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--DDLPSLKHVLLVGEDVEE-- 179 (570)
T ss_pred ECCCCHHHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--hcCCCceEEEEECCCcCC--
Confidence 9999999999999999999999999999999999999999999999999776543321 234556666666543211
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
.....++.++...... ........++++++|+|||||||.||||+++|+++++.+......+ .++++|+++
T Consensus 180 -------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~~~ 250 (570)
T PRK04319 180 -------GPGTLDFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDVYW 250 (570)
T ss_pred -------CcCccCHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCceEE
Confidence 1122356655443222 2223345678999999999999999999999999998887777777 788999999
Q ss_pred EccChHHHHHHHH-HHHHhhcCceEEe----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 297 AYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 297 ~~~pl~h~~~~~~-~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
+..|+.|.++... ++.++..|+++++ +++..+++. ++++++|+++++|.+++.+.+.......
T Consensus 251 ~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~- 318 (570)
T PRK04319 251 CTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRI-----------LEDYKVTVWYTAPTAIRMLMGAGDDLVK- 318 (570)
T ss_pred ecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHH-----------HHHcCCeEEEeCHHHHHHHHhcCCcccc-
Confidence 9999999988655 7788999999887 456666666 9999999999999999988753110000
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceec
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQG 451 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~ 451 (541)
....+++|.+++||+++++++.+++++.+|.++++.
T Consensus 319 --------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~ 354 (570)
T PRK04319 319 --------------------------------------------KYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDN 354 (570)
T ss_pred --------------------------------------------cCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEec
Confidence 000138999999999999999999999999999999
Q ss_pred cCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc--CCcccccCCCchhhHhhhc
Q 009160 452 YGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PNVTVGYFKNEEKTKEVYK 528 (541)
Q Consensus 452 YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g--~~v~~GY~~~~~~t~~~f~ 528 (541)
||+||+++.++..... +..++++|+|+|+++++|+| +++..+ +.|+.|||+|+| ++++.|||++++.|++.|
T Consensus 355 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~---~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~- 429 (570)
T PRK04319 355 WWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVD-DQGNEL---PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF- 429 (570)
T ss_pred eeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEEC-CCCCCC---CCCCceEEEEcCCCChHHhHhcCCHHHhhhhh-
Confidence 9999998765544332 34568999999999999999 666654 478899999997 899999999999999998
Q ss_pred cCCCceEEcccc
Q 009160 529 VMLDRFMLMVAL 540 (541)
Q Consensus 529 ~d~dGw~~~~~~ 540 (541)
.||||+|+|+
T Consensus 430 --~~gw~~TGDl 439 (570)
T PRK04319 430 --AGDWYVSGDS 439 (570)
T ss_pred --cCCceEeCcE
Confidence 3889988874
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=429.69 Aligned_cols=391 Identities=23% Similarity=0.284 Sum_probs=296.1
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|.+.++++|+++|+.+. ++. .......++.+||+||.++++++|++|.+.|+++||+|+++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~-----------~~~--~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~ 72 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVP-----------GGR--GADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLM 72 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEec-----------cCC--CCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 46889999999999999999863 111 00001234479999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc--chhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--ELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+ ....+... .....+.++.++....
T Consensus 73 ~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~-- 148 (552)
T PRK09274 73 VTPSLEFFALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGW--GKPSVRRLVTVGGRLL-- 148 (552)
T ss_pred eCCcHHHHHHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhcc--Cccchhheeccccccc--
Confidence 99999999999999999999999999999999999999999999999752 11211111 1122333444332100
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 295 (541)
....+++++.......+.......++++++|+|||||||.||||+++|+++.+.+......+ ++.++|+.
T Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~ 218 (552)
T PRK09274 149 ---------WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEID 218 (552)
T ss_pred ---------cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCcee
Confidence 01123444432222222223445678999999999999999999999999999988887777 88899999
Q ss_pred EEccChHHHHHHHHHHHHhhcCceEEeC----------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHH
Q 009160 296 LAYLPLAHVLELVAENLIAGVGSAIGYG----------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (541)
Q Consensus 296 l~~~pl~h~~~~~~~~~~l~~G~~v~~~----------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 365 (541)
++.+|++|.+++ ..|+++++. ++..+++. ++++++|+++++|+++.++.+..
T Consensus 219 ~~~~pl~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~ 280 (552)
T PRK09274 219 LPTFPLFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAA-----------IERYGVTNLFGSPALLERLGRYG 280 (552)
T ss_pred eeccCHHHhhhh-------hhCCeEEecCcccccccccCHHHHHHH-----------HHHcCCeEEeccHHHHHHHHHHh
Confidence 999999886543 457776652 33444454 99999999999999999988743
Q ss_pred HHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-
Q 009160 366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL- 444 (541)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~- 444 (541)
.... ...+++|.+++||+++++++.+++++.+
T Consensus 281 ~~~~-----------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~ 313 (552)
T PRK09274 281 EANG-----------------------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLP 313 (552)
T ss_pred hhcC-----------------------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcC
Confidence 2110 0113899999999999999999999998
Q ss_pred -CCcceeccCcccccccccccCCC----------CCCCCCcCCCcCCeEEEEEecCCCC-----ccCCCCCCCccEEEEc
Q 009160 445 -GAPIGQGYGLTETCAGGTFSEVD----------DSSVGRVGAPLPCSFIKLIDWPEGG-----YLTSDSPMPRGEIVIA 508 (541)
Q Consensus 445 -g~~v~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~p~~~~ev~ivd~~~~~-----~~~~~~~g~~GEi~v~ 508 (541)
|+++++.||+||++++++..... .....++|+|+|+++++|+|..++. ...+++.|+.|||+|+
T Consensus 314 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~ 393 (552)
T PRK09274 314 PDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVA 393 (552)
T ss_pred CCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEe
Confidence 57999999999998765433211 1122479999999999999943211 1122457889999999
Q ss_pred cCCcccccCCCchhhHhhhccCCCc--eEEcccc
Q 009160 509 GPNVTVGYFKNEEKTKEVYKVMLDR--FMLMVAL 540 (541)
Q Consensus 509 g~~v~~GY~~~~~~t~~~f~~d~dG--w~~~~~~ 540 (541)
|++++.|||++|+.|.+.|..|.|| ||+|+|+
T Consensus 394 g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDl 427 (552)
T PRK09274 394 GPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDL 427 (552)
T ss_pred cCcccccccCChHHhhhhhcccCCCCcEEEcCCE
Confidence 9999999999999999887556678 9999885
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=427.21 Aligned_cols=395 Identities=26% Similarity=0.307 Sum_probs=314.9
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVAI 136 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i 136 (541)
.|+.++|.+.++++|+++|+.+ +++ .+||.||.+++.++|..|.+. |+++|++|++
T Consensus 10 ~tl~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i 66 (546)
T PRK08314 10 TSLFHNLEVSARRYPDKTAIVF------------YGR-----------AISYRELLEEAERLAGYLQQECGVRKGDRVLL 66 (546)
T ss_pred CCHHHHHHHHHHHcCCCcceee------------cCc-----------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEE
Confidence 5899999999999999999986 333 699999999999999999999 9999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc--c
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--S 214 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~--~ 214 (541)
+++|+++|+++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+......+ .++.++..+.... .
T Consensus 67 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 145 (546)
T PRK08314 67 YMQNSPQFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL-RLRHVIVAQYSDYLPA 145 (546)
T ss_pred ECCCChHHHHHHHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc-CcceEEEecchhhccc
Confidence 999999999999999999999999999999999999999999999999988777665544333 2344443321100 0
Q ss_pred -----cccccc------ccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHH
Q 009160 215 -----AVSSVE------QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283 (541)
Q Consensus 215 -----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~ 283 (541)
...... .........|++...... ........++++++|+|||||||.||||+++|+++++.+....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~ 223 (546)
T PRK08314 146 EPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSV 223 (546)
T ss_pred ccccCcccccccccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH
Confidence 000000 001122345666554321 1223445678999999999999999999999999999988877
Q ss_pred hhCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHH
Q 009160 284 TIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359 (541)
Q Consensus 284 ~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 359 (541)
..+ .+..+|++++.+|++|.+++.. ++.++..|+++++ +++..+.+. ++++++|++.++|.++.
T Consensus 224 ~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~ 291 (546)
T PRK08314 224 LWS-NSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARL-----------IERYRVTHWTNIPTMVV 291 (546)
T ss_pred Hhh-CCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHH-----------HHHhcCceecccHHHHH
Confidence 777 7889999999999999999866 6678999999999 344555555 99999999999999998
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHH
Q 009160 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRF 439 (541)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~ 439 (541)
.+....... ....+++|.+++||+++++++.++
T Consensus 292 ~ll~~~~~~-----------------------------------------------~~~~~~l~~~~~gG~~~~~~~~~~ 324 (546)
T PRK08314 292 DFLASPGLA-----------------------------------------------ERDLSSLRYIGGGGAAMPEAVAER 324 (546)
T ss_pred HHHhCCCcc-----------------------------------------------ccCchhhheeeeccccCCHHHHHH
Confidence 776421000 000127999999999999999999
Q ss_pred HHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCC
Q 009160 440 INICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (541)
Q Consensus 440 ~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~ 519 (541)
+.+.+++++++.||+||++...+....+....+++|.|+++++++|+|+++++.++ .|..|||+|+|++++.||+++
T Consensus 325 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~---~g~~Gel~v~g~~~~~gY~~~ 401 (546)
T PRK08314 325 LKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELP---PGEVGEIVVHGPQVFKGYWNR 401 (546)
T ss_pred HHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCC---CCCceEEEEECCchhccccCC
Confidence 99999999999999999987766555444456899999999999999966676654 778999999999999999999
Q ss_pred chhhHhhhcc-CCCceEEcccc
Q 009160 520 EEKTKEVYKV-MLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~-d~dGw~~~~~~ 540 (541)
++.|++.|.. +.++||+|+|+
T Consensus 402 ~~~t~~~f~~~~~~~~~~TGDl 423 (546)
T PRK08314 402 PEATAEAFIEIDGKRFFRTGDL 423 (546)
T ss_pred hhHhhhhhhhcCCCceEecCCE
Confidence 9999988722 23458888874
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=432.70 Aligned_cols=398 Identities=20% Similarity=0.217 Sum_probs=295.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...|+.++|+++++++|+++|+.+.+.. ++. .+.++.+||+||.++++++|++|.+. +++||+|
T Consensus 18 ~~~~~l~~~l~~~a~~~~~~~a~~~~~~~--------~~~------~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V 82 (631)
T PRK07769 18 PPNTNLVRHVERWAKVRGDKLAYRFLDFS--------TER------DGVARDLTWSQFGARNRAVGARLQQV-TKPGDRV 82 (631)
T ss_pred cccCCHHHHHHHHHHhCCCCeEEEEeccC--------CCC------CCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence 34468999999999999999999863210 111 12345799999999999999999887 8999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEec-cCCCC--HHHHHHHHhhcCceEEEECccchhHHHHhhcCCCC--ccEEEEec
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTI-YASLG--EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT--VKHVICMD 209 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~ii~~~ 209 (541)
+++++|+++|+++++||+++|++++|+ ++..+ .+++.+++++++++++|++.+..+.+.+.....+. ...++.++
T Consensus 83 ~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (631)
T PRK07769 83 AILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVD 162 (631)
T ss_pred EEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcc
Confidence 999999999999999999999999999 45554 68899999999999999998766555443322221 12333332
Q ss_pred CCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
..... . ..........++++++|+|||||||.||||++||+++.+.+......+ .+
T Consensus 163 ~~~~~----------------------~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~ 218 (631)
T PRK07769 163 AVPDE----------------------V-GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-EG 218 (631)
T ss_pred ccccc----------------------c-ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-CC
Confidence 21000 0 000111235678999999999999999999999999998888777777 78
Q ss_pred CCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccccc---eEEeecHHHHHHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRP---TVMASVPAILDRVRDGVR 366 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~ 366 (541)
.++|++++++|++|++++...+.+++.|+++++..+..+... +..+...++++++ +++.++|.++..+.....
T Consensus 219 ~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~ 294 (631)
T PRK07769 219 QEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRR----PGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG 294 (631)
T ss_pred CCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhC----HHHHHHHHHhhccccCceEeeCCchHHHHHHhhc
Confidence 899999999999999999887788888999887544322111 1111222777665 789999998876654210
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh--
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-- 444 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-- 444 (541)
...... .....+++|.+++||+++++++.+.|.+.|
T Consensus 295 ~~~~~~------------------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~ 332 (631)
T PRK07769 295 LPKDGE------------------------------------------PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAP 332 (631)
T ss_pred cchhcc------------------------------------------cCcchhheeeEEeccCCCCHHHHHHHHHHHhh
Confidence 000000 000113899999999999999999999987
Q ss_pred -CC---cceeccCcccccccccccCCCCC---------------------------CCCCcCCCcCCeEEEEEecCCCCc
Q 009160 445 -GA---PIGQGYGLTETCAGGTFSEVDDS---------------------------SVGRVGAPLPCSFIKLIDWPEGGY 493 (541)
Q Consensus 445 -g~---~v~~~YG~TE~~~~~~~~~~~~~---------------------------~~~~vG~p~~~~ev~ivd~~~~~~ 493 (541)
|+ .+++.||+||++..++....... ..+++|+|+++.+++|+|.++++.
T Consensus 333 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~ 412 (631)
T PRK07769 333 YGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASE 412 (631)
T ss_pred cCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcC
Confidence 33 59999999998776554322110 125799999999999999656665
Q ss_pred cCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc---------------CCCceEEcccc
Q 009160 494 LTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV---------------MLDRFMLMVAL 540 (541)
Q Consensus 494 ~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~---------------d~dGw~~~~~~ 540 (541)
+ +.|+.|||+|+|++++.|||++++.|++.|.. +.+|||+|+|+
T Consensus 413 ~---~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDl 471 (631)
T PRK07769 413 L---PDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDY 471 (631)
T ss_pred C---CCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeecccc
Confidence 4 47899999999999999999999999999821 13599999985
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=420.73 Aligned_cols=386 Identities=23% Similarity=0.289 Sum_probs=307.9
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|++.++.+|+++|+.... +. .+..+.+||.||.++++++|.+|.+.|+++|++|++
T Consensus 21 ~~~~~~~~~~~~~~~p~~~a~~~~~----------~~-------~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i 83 (538)
T TIGR03208 21 DRTINDHFDAAVANCPDKPALTAYR----------DG-------HGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSF 83 (538)
T ss_pred cCcHHHHHHHHHHHCCCceEEEeec----------cc-------CCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3689999999999999999997521 11 122357999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEecCC
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++++++++... ....++....+..+.++..+..
T Consensus 84 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (538)
T TIGR03208 84 QLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGD 163 (538)
T ss_pred ECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCC
Confidence 99999999999999999999999999999999999999999999999987642 2233333444555666666532
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCC-------CCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENP-------VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~ 284 (541)
.. ..++++........ .......++++++|+|||||||.||||+++|+++.+.+.....
T Consensus 164 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~ 229 (538)
T TIGR03208 164 GD--------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE 229 (538)
T ss_pred CC--------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence 11 11222222111000 1112356799999999999999999999999999999888877
Q ss_pred hCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHH
Q 009160 285 IVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360 (541)
Q Consensus 285 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 360 (541)
.+ .+..+|++++.+|++|..++.. ++.+++.|+++++ +++..+++. ++++++|++.++|.++..
T Consensus 230 ~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~p~~~~~ 297 (538)
T TIGR03208 230 RL-ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAEL-----------IRETGVTFTMASTPFLTD 297 (538)
T ss_pred hc-CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHH-----------HHHhCCeEEecCHHHHHH
Confidence 77 7889999999999999988765 6778999999988 456666666 999999999999999988
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHH
Q 009160 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440 (541)
Q Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~ 440 (541)
+......... ..+++|.+++||+++++++.+++
T Consensus 298 l~~~~~~~~~-----------------------------------------------~~~~l~~~~~gG~~~~~~~~~~~ 330 (538)
T TIGR03208 298 LCRAVKESGA-----------------------------------------------PVPSLFTFLCAGAPIPGILVERA 330 (538)
T ss_pred HHhchhccCC-----------------------------------------------CCCcceEEEEcCCCCCHHHHHHH
Confidence 7653211100 01389999999999999999999
Q ss_pred HHHhCCcceeccCcccccccccccCCCC--CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCC
Q 009160 441 NICLGAPIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518 (541)
Q Consensus 441 ~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~ 518 (541)
.+.+|++++|.||+||++++.+...... ....++|+|+++++++|+| +++..+ +.|+.|||+|+|++++.||++
T Consensus 331 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~---~~g~~Gel~v~g~~~~~gy~~ 406 (538)
T TIGR03208 331 WELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKL---SQGETGRLLVRGCSNFGGYLK 406 (538)
T ss_pred HHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCC---cCCCCcEEEEecCcccccccC
Confidence 9988999999999999987665443322 2246899999999999999 666654 478899999999999999999
Q ss_pred CchhhHhhhccCCCceEEcccc
Q 009160 519 NEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 519 ~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+++.|+ + +.||||+|+|+
T Consensus 407 ~~~~~~--~--~~~~~~~TGD~ 424 (538)
T TIGR03208 407 RPHLNS--T--DAEGWFDTGDL 424 (538)
T ss_pred Cccccc--c--cCCCceeccce
Confidence 998875 3 67888888874
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=421.88 Aligned_cols=377 Identities=20% Similarity=0.192 Sum_probs=302.6
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|.++++++|+++|+.. +++ .+||.||.++++++|++|.+.|+++|++|+++
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~ 99 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLID------------ELG-----------TLTWRELDERSDALAAALQALPIGEPRVVGIM 99 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEe------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5799999999999999999985 332 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+....+.......+....++..++..
T Consensus 100 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 174 (537)
T PRK13382 100 CRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDED----- 174 (537)
T ss_pred ecCcHHHHHHHHHHHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCc-----
Confidence 999999999999999999999999999999999999999999999999877665554433333333344332211
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
....++++...... . .....+++.++++|||||||.||||+++|++++.........+ .+..+|+++.
T Consensus 175 --------~~~~~~~~~~~~~~-~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~ 242 (537)
T PRK13382 175 --------HDLTVEVLIAAHAG-Q--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTVI 242 (537)
T ss_pred --------ccccHHHHhhccCc-C--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEEE
Confidence 01234444432211 1 1123468899999999999999999999999988887777766 7788999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG 374 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 374 (541)
.+|++|.+++...+.++..|+++++ +++..+++. ++++++|++.++|+++..+.+........
T Consensus 243 ~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~~~--- 308 (537)
T PRK13382 243 VAPMFHAWGFSQLVLAASLACTIVTRRRFDPEATLDL-----------IDRHRATGLAVVPVMFDRIMDLPAEVRNR--- 308 (537)
T ss_pred ecChHhhhHHHHHHHHHhcCcEEEECCCcCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHcCCchhccc---
Confidence 9999999999778888999999988 666677776 99999999999999999887532110000
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCc
Q 009160 375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454 (541)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~ 454 (541)
..+.++|.+++||+++++++.+.+.+.+|.+++|.||+
T Consensus 309 ------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~ 346 (537)
T PRK13382 309 ------------------------------------------YSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNA 346 (537)
T ss_pred ------------------------------------------CCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccc
Confidence 00137999999999999999999999999999999999
Q ss_pred ccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCc
Q 009160 455 TETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDR 533 (541)
Q Consensus 455 TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dG 533 (541)
||++.+++..... ...++++|+|+++++++|+| ++++.+ +.|+.|||+|+|++++.||+ ++.|.+ | .||
T Consensus 347 TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~~~~gY~--~~~~~~-~---~~g 416 (537)
T PRK13382 347 TEAGMIATATPADLRAAPDTAGRPAEGTEIRILD-QDFREV---PTGEVGTIFVRNDTQFDGYT--SGSTKD-F---HDG 416 (537)
T ss_pred cccCcceecChhHhccCCCCccccCcCcEEEEEC-CCCCCC---CCCCeeEEEEEcCCcccCcc--ccchhh-c---cCC
Confidence 9998766543322 33568999999999999999 677654 47889999999999999998 555543 3 357
Q ss_pred eEEcccc
Q 009160 534 FMLMVAL 540 (541)
Q Consensus 534 w~~~~~~ 540 (541)
||+|+|+
T Consensus 417 ~~~TGDl 423 (537)
T PRK13382 417 FMASGDV 423 (537)
T ss_pred CEeeCce
Confidence 7777763
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=427.26 Aligned_cols=389 Identities=21% Similarity=0.224 Sum_probs=292.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...|+.++|+++++++|+++|+.+.+.. ++. .+..+.+||.||.++++++|++|.+. +++||+|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V 95 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYLDHS--------HSA------AGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRV 95 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEEccC--------CCC------CCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEE
Confidence 44578999999999999999999864210 100 12335799999999999999999886 9999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEec-cCCCC--HHHHHHHHhhcCceEEEECccchhHHHHhhcCCCC--ccEEEEec
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTI-YASLG--EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT--VKHVICMD 209 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~ii~~~ 209 (541)
+++++|+++|+++++||+++|++++|+ ++.++ ++++.+++++++++++|++++..+.+.+....++. ...++.++
T Consensus 96 ~l~~~n~~e~~~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 175 (612)
T PRK12476 96 AILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAID 175 (612)
T ss_pred EEECCCChhHHHHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEec
Confidence 999999999999999999999999999 57766 78999999999999999998776655544333322 12344443
Q ss_pred CCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC-
Q 009160 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD- 288 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~- 288 (541)
+.... ...........++++++|+|||||||.||||+++|+++++.+......+ .
T Consensus 176 ~~~~~-----------------------~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~ 231 (612)
T PRK12476 176 AIPDS-----------------------AGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-DL 231 (612)
T ss_pred ccccc-----------------------ccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-cc
Confidence 21100 0001112234678999999999999999999999999998777666666 5
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeC-------CcccccccchhhhcCccccc--ccccceEEeecHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDA--SVLRPTVMASVPAILD 359 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i--~~~~~t~~~~~P~~~~ 359 (541)
+.++|++++++|++|.+++...+.++..|+++++. +|..+++. + .++++|+++.+|+++.
T Consensus 232 ~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~-----------i~~~~~~~t~~~~~P~~~~ 300 (612)
T PRK12476 232 LDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKA-----------LSEGSRTGRVVTAAPNFAY 300 (612)
T ss_pred CCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHH-----------HhhhccCCeEEEeCCcHHH
Confidence 78889999999999999998766665666666553 34444444 6 3588999999999888
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHH
Q 009160 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRF 439 (541)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~ 439 (541)
.+.......... .....+++| +++||+++++++.+.
T Consensus 301 ~l~~~~~~~~~~-------------------------------------------~~~~l~~lr-~~~gg~~~~~~~~~~ 336 (612)
T PRK12476 301 EWAAQRGLPAEG-------------------------------------------DDIDLSNVV-LIIGSEPVSIDAVTT 336 (612)
T ss_pred HHHHHhcChhhh-------------------------------------------cCcchhHhe-EEecccCCCHHHHHH
Confidence 776531000000 000013789 999999999999999
Q ss_pred HHHHh---CC---cceeccCcccccccccccCCCC---------------------------CCCCCcCCCcCCeEEEEE
Q 009160 440 INICL---GA---PIGQGYGLTETCAGGTFSEVDD---------------------------SSVGRVGAPLPCSFIKLI 486 (541)
Q Consensus 440 ~~~~~---g~---~v~~~YG~TE~~~~~~~~~~~~---------------------------~~~~~vG~p~~~~ev~iv 486 (541)
+++.| |+ .+++.||+||++..++...++. ...+++|+|+++++++|+
T Consensus 337 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~iv 416 (612)
T PRK12476 337 FNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIV 416 (612)
T ss_pred HHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEE
Confidence 99987 44 4899999999876554322211 012589999999999999
Q ss_pred ecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc----------------CCCceEEcccc
Q 009160 487 DWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV----------------MLDRFMLMVAL 540 (541)
Q Consensus 487 d~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~----------------d~dGw~~~~~~ 540 (541)
|.++|+.+ +.|+.|||+|+|++++.|||++|+.|++.|.. +.+|||+|+|+
T Consensus 417 d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDl 483 (612)
T PRK12476 417 DPDTGAEL---PDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDL 483 (612)
T ss_pred eCCCCcCC---CCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccc
Confidence 94337664 47899999999999999999999999999821 02359999885
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=418.28 Aligned_cols=384 Identities=20% Similarity=0.243 Sum_probs=305.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
....++.++|+++++++|+++|+.+ +++ .+||.||.++++++|..|.+.|+++|++|
T Consensus 20 ~~~~~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V 76 (527)
T TIGR02275 20 WQDKPLTDILRDQAARYPDAIAIIC------------GNR-----------QWSYRELDQRADNLAAGLTKLGIGQGDTA 76 (527)
T ss_pred ccCCcHHHHHHHHHHHCCCceEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457899999999999999999975 443 79999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEec
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMD 209 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~ 209 (541)
+++++|+++|+++++||+++|++++++++..+.+++.++++.+++++++++.... +....+....+.++.++...
T Consensus 77 ~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (527)
T TIGR02275 77 VVQLPNIAEFYIVFFALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAG 156 (527)
T ss_pred EEECCCcHHHHHHHHHHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEec
Confidence 9999999999999999999999999999999999999999999999999986542 11222223334445554433
Q ss_pred CCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
..... .......... ..+.+.....++++++|+|||||||.||||+++|+++...+......+ .+
T Consensus 157 ~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~ 221 (527)
T TIGR02275 157 QTRVE-------------AELFLWLESP-AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-WL 221 (527)
T ss_pred CCCCc-------------chhhHHhhCc-CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CC
Confidence 21100 0011111111 111122345678999999999999999999999999999888877777 78
Q ss_pred CCCcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
+.+|++++.+|++|.+++.. .+.++..|+++++ +++..+++. ++++++|+++++|.++..+.+.
T Consensus 222 ~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~ 290 (527)
T TIGR02275 222 TQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPL-----------IERHKVTVTALVPPAVALWMQA 290 (527)
T ss_pred CcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHH-----------HHHhCCeEEEecHHHHHHHHhC
Confidence 89999999999999999764 6778999999988 445555555 9999999999999999887664
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~ 444 (541)
...... ..+++|.+++||+++++++.+++++.+
T Consensus 291 ~~~~~~-----------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~ 323 (527)
T TIGR02275 291 ASKSRY-----------------------------------------------DLSSLKLLQVGGAKFSEAAARRVPAVF 323 (527)
T ss_pred ccccCC-----------------------------------------------CccceEEEEEcCCCCCHHHHHHHHHHh
Confidence 321100 013899999999999999999999999
Q ss_pred CCcceeccCcccccccccccC-CCCCCCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchh
Q 009160 445 GAPIGQGYGLTETCAGGTFSE-VDDSSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522 (541)
Q Consensus 445 g~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~ 522 (541)
|+++++.||+||++...+... ..+...+++|+|+ ++.+++|+| ++++.. +.|+.|||+|+|+.++.|||++++.
T Consensus 324 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~---~~g~~Gei~v~g~~~~~gY~~~~~~ 399 (527)
T TIGR02275 324 GCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPV---APGETGMLLTRGPYTFRGYYKAPEH 399 (527)
T ss_pred CCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEEC-CCCCCC---CCCCceEEEecCCccchhhcCChhH
Confidence 999999999999654332211 1223457899999 589999999 667654 4788999999999999999999999
Q ss_pred hHhhhccCCCceEEcccc
Q 009160 523 TKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 523 t~~~f~~d~dGw~~~~~~ 540 (541)
|++.| ++||||+|+|+
T Consensus 400 ~~~~~--~~dg~~~TGDl 415 (527)
T TIGR02275 400 NAAAF--DAEGFYYTGDL 415 (527)
T ss_pred hHhhc--CcCCCEEcCce
Confidence 99999 88999999984
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=426.49 Aligned_cols=383 Identities=25% Similarity=0.323 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEe
Q 009160 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAIFA 138 (541)
Q Consensus 60 l~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~ 138 (541)
+..+|.+ +.+|+++|+.+.. .+ ..+||.||.++++++|++|.+ .|+++||+|++++
T Consensus 43 ~~~l~~~--~~~~~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~ 99 (560)
T PLN02574 43 VSFIFSH--HNHNGDTALIDSS----------TG-----------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLL 99 (560)
T ss_pred HHHHhcC--cccCCCCEEEECC----------CC-----------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence 3455554 6799999998521 12 269999999999999999999 8999999999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+.+|+++++||+++|++++|++|.++.+++.++++.++++++|++.+..+.+.... . .++.++.......
T Consensus 100 ~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~-- 171 (560)
T PLN02574 100 PNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLG-----V-PVIGVPENYDFDS-- 171 (560)
T ss_pred CCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcC-----C-cEEecCccccccc--
Confidence 9999999999999999999999999999999999999999999999987655554321 1 1232221110000
Q ss_pred ccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhh----CCCCCCCcE
Q 009160 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI----VPDLGSKDV 294 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~----~~~~~~~d~ 294 (541)
.......++++...... ........++++++|+|||||||.||||+++|+++++.+...... +.....+++
T Consensus 172 ----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (560)
T PLN02574 172 ----KRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNV 246 (560)
T ss_pred ----CccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcE
Confidence 00112345554433221 112234567899999999999999999999999999887765432 212346789
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+++.+|++|.+++.. ++.++..|+++++ +++..+++. ++++++|+++++|.++..+.+......
T Consensus 247 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~- 314 (560)
T PLN02574 247 YLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKV-----------IDRFKVTHFPVVPPILMALTKKAKGVC- 314 (560)
T ss_pred EEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHH-----------HHHcCCeEEecCCHHHHHHHhCccccc-
Confidence 999999999999876 4566888999888 566666666 999999999999999998876421100
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcce
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIG 449 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~ 449 (541)
....+++|.+++||+++++++.+.+.+.+ ++.++
T Consensus 315 ---------------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~ 349 (560)
T PLN02574 315 ---------------------------------------------GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFI 349 (560)
T ss_pred ---------------------------------------------cCccccceEEEEecccCCHHHHHHHHHHCCCCcEE
Confidence 00113899999999999999999998887 78999
Q ss_pred eccCcccccccccccCC--CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhh
Q 009160 450 QGYGLTETCAGGTFSEV--DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f 527 (541)
+.||+||++...+.... ...+.+++|+|+++++++|+|+++++.+ +.|+.|||+|+|++++.|||++++.|++.|
T Consensus 350 ~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~---~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~ 426 (560)
T PLN02574 350 QGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLL---PPGNCGELWIQGPGVMKGYLNNPKATQSTI 426 (560)
T ss_pred ecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCC---CCCCCeEEEEECcchhhhhcCChhHhhhhc
Confidence 99999999866543222 2235689999999999999997677654 478899999999999999999999999998
Q ss_pred ccCCCceEEcccc
Q 009160 528 KVMLDRFMLMVAL 540 (541)
Q Consensus 528 ~~d~dGw~~~~~~ 540 (541)
+.||||+|+|+
T Consensus 427 --~~~g~~~TGDl 437 (560)
T PLN02574 427 --DKDGWLRTGDI 437 (560)
T ss_pred --cCCCCcccceE
Confidence 88899998874
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=419.24 Aligned_cols=386 Identities=23% Similarity=0.293 Sum_probs=310.7
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...++.++|++.++++|+++|+.+. +|+ .+||+|+.++++++|++|.+.|+++||+|+
T Consensus 21 ~~~~l~~~~~~~~~~~pd~~a~~~~-----------~~~-----------~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~ 78 (547)
T PRK06087 21 GDASLADYWQQTARAMPDKIAVVDN-----------HGA-----------SYTYSALDHAASRLANWLLAKGIEPGDRVA 78 (547)
T ss_pred CCCCHHHHHHHHHHHCCCceEEEcC-----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3468999999999999999999752 334 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc-----hhHHHHhhcCCCCccEEEEecC
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICMDA 210 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~~~ 210 (541)
++++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++... .+.+.+.....+.++.++.++.
T Consensus 79 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (547)
T PRK06087 79 FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDK 158 (547)
T ss_pred EECCCCHHHHHHHHHHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999997532 2344444455566667777665
Q ss_pred CCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
..... ...++.++........ .+....++++++|+|||||||.||||+++|++++.........+ ++.
T Consensus 159 ~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~ 226 (547)
T PRK06087 159 LAPAT----------SSLSLSQIIADYEPLT-TAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLT 226 (547)
T ss_pred cCCCc----------CccCHHHHhccCCccc-CCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCC
Confidence 33211 1124555443322111 22345678999999999999999999999999998887776666 788
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
++|++++.+|++|.++++. .+.++..|+++++ +++..+++. ++++++|+++.+|..+..+++...
T Consensus 227 ~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~~~l~~~~ 295 (547)
T PRK06087 227 WQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLAL-----------LEQQRCTCMLGATPFIYDLLNLLE 295 (547)
T ss_pred CCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHcCCCEEeccHHHHHHHHhccc
Confidence 9999999999999999875 6677999999988 455555555 999999999988777666654321
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~ 446 (541)
... ...+++|.+++||+++++++.+++... |+
T Consensus 296 ~~~-----------------------------------------------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~ 327 (547)
T PRK06087 296 KQP-----------------------------------------------ADLSALRFFLCGGTTIPKKVARECQQR-GI 327 (547)
T ss_pred cCC-----------------------------------------------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CC
Confidence 100 011389999999999999999988775 99
Q ss_pred cceeccCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhH
Q 009160 447 PIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~ 524 (541)
++++.||+||+++........ ....+++|.|+++++++|+| ++++.+ +.|+.|||+|+|++++.||+++++.+.
T Consensus 328 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~~~~~~ 403 (547)
T PRK06087 328 KLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTL---PPGCEGEEASRGPNVFMGYLDEPELTA 403 (547)
T ss_pred cEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCC---cCCCcceEEEecccccccccCCHHHHH
Confidence 999999999998766544322 12346799999999999999 666654 478899999999999999999999999
Q ss_pred hhhccCCCceEEcccc
Q 009160 525 EVYKVMLDRFMLMVAL 540 (541)
Q Consensus 525 ~~f~~d~dGw~~~~~~ 540 (541)
+.| +.||||+|+|+
T Consensus 404 ~~~--~~~g~~~TGDl 417 (547)
T PRK06087 404 RAL--DEEGWYYSGDL 417 (547)
T ss_pred HHh--CCCCCcCcCce
Confidence 988 88899998874
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=418.84 Aligned_cols=383 Identities=22% Similarity=0.247 Sum_probs=308.1
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...++.++|+++++++|+++|+.. +++ .+||.||.++++++|..|.+.|+++|++|+
T Consensus 19 ~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~ 75 (542)
T PRK06155 19 SERTLPAMLARQAERYPDRPLLVF------------GGT-----------RWTYAEAARAAAAAAHALAAAGVKRGDRVA 75 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEe------------CCc-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 346899999999999999999986 333 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
++++|+++|+++++||+++|++++|+++.++.+++.++++++++++++++.+....+.+.......++.++.++......
T Consensus 76 v~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (542)
T PRK06155 76 LMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVS 155 (542)
T ss_pred EECCCChHHHHHHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccc
Confidence 99999999999999999999999999999999999999999999999999887776665544333455666665432100
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 295 (541)
. ...+..................++++++|+|||||||.||||+++|+++.+........+ .+.++|++
T Consensus 156 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~~ 224 (542)
T PRK06155 156 V----------PAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDVL 224 (542)
T ss_pred c----------ccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCEE
Confidence 0 000111100011111122345678999999999999999999999999988877777777 88999999
Q ss_pred EEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhcc
Q 009160 296 LAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK 372 (541)
Q Consensus 296 l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 372 (541)
++.+|++|..++...+.++..|+++++ +++..+++. ++++++|+++++|+++..+.+......
T Consensus 225 l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~~~~~--- 290 (542)
T PRK06155 225 YTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPA-----------VRRHGATVTYLLGAMVSILLSQPARES--- 290 (542)
T ss_pred EEecCHHHHHHHHHHHHHHHcCceEEeeCCCCHHHHHHH-----------HHHhCCcEEEchHHHHHHHHcCcCccc---
Confidence 999999999999888889999999988 556666666 999999999999999988765321100
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceecc
Q 009160 373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGY 452 (541)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~Y 452 (541)
...+++|.++.|| +++++.+.+++.+|+++++.|
T Consensus 291 --------------------------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~Y 324 (542)
T PRK06155 291 --------------------------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGY 324 (542)
T ss_pred --------------------------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeee
Confidence 0013789888666 578899999999999999999
Q ss_pred CcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC---CcccccCCCchhhHhhhcc
Q 009160 453 GLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NVTVGYFKNEEKTKEVYKV 529 (541)
Q Consensus 453 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~---~v~~GY~~~~~~t~~~f~~ 529 (541)
|+||++..+.... .....+++|.|+++++++|+| ++++.+ +.|..|||+|+|+ +++.||+++++.|++.|
T Consensus 325 G~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-- 397 (542)
T PRK06155 325 GSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVD-EHDQEL---PDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-- 397 (542)
T ss_pred cccccCccccCCC-CCCCCCCcCccCCCceEEEEC-CCCCCC---CCCCceEEEEecCCccccchhhcCCHHHHHHhh--
Confidence 9999987765432 345678999999999999999 666654 4788999999998 69999999999999888
Q ss_pred CCCceEEcccc
Q 009160 530 MLDRFMLMVAL 540 (541)
Q Consensus 530 d~dGw~~~~~~ 540 (541)
.+|||+|+|+
T Consensus 398 -~~~~~~TGD~ 407 (542)
T PRK06155 398 -RNLWFHTGDR 407 (542)
T ss_pred -cCCcEeccce
Confidence 5788888774
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=502.76 Aligned_cols=369 Identities=19% Similarity=0.244 Sum_probs=304.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...+++++|+++++++|+++|+++ +++ .+||+||+++++++|+.|.+.|+++|++|
T Consensus 3092 ~~~~~~~~l~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V 3148 (3956)
T PRK12467 3092 PSERLVHQLIEAQVARTPEAPALVF------------GDQ-----------QLSYAELNRRANRLAHRLIAIGVGPDVLV 3148 (3956)
T ss_pred CccccHHHHHHHHHHhCCCcceEee------------CCc-----------ccCHHHHHHHHHHHHHHHHHcCCCCCCeE
Confidence 3446899999999999999999987 333 69999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+|+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++....+.+... ....++.++..
T Consensus 3149 ~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~-----~~~~~~~~~~~--- 3220 (3956)
T PRK12467 3149 GVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP-----AGDTALTLDRL--- 3220 (3956)
T ss_pred EEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc-----cCCceeeecch---
Confidence 9999999999999999999999999999999999999999999999999987654432211 01112222211
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
.........+.....+++++||+|||||||.||||+++|+++.+.+.+....+ +++++|+
T Consensus 3221 -------------------~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~ 3280 (3956)
T PRK12467 3221 -------------------DLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDR 3280 (3956)
T ss_pred -------------------hhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCE
Confidence 00011111222446789999999999999999999999999999999988888 8999999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeCC-----cccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGT-----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~-----~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+++++|++|+.+...++.+|+.|+++++.+ +..+.+. ++++++|++.++|+++..+.+.....
T Consensus 3281 ~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~-----------i~~~~vt~~~~~Ps~l~~l~~~~~~~- 3348 (3956)
T PRK12467 3281 VLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQA-----------IHAHRISIACFPPAYLQQFAEDAGGA- 3348 (3956)
T ss_pred EEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHH-----------HHHcCCEEEEcCHHHHHHHHhccccc-
Confidence 999999999999988999999999999843 3445555 99999999999999999886531100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcc
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v 448 (541)
..++||.+++||+++++++.+.+++.+ ++.+
T Consensus 3349 ------------------------------------------------~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l 3380 (3956)
T PRK12467 3349 ------------------------------------------------DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGL 3380 (3956)
T ss_pred ------------------------------------------------CCCCceEEEEecCCCCHHHHHHHHHhCCCCEE
Confidence 113899999999999999999998876 6789
Q ss_pred eeccCcccccccccccCCCC-----CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 449 GQGYGLTETCAGGTFSEVDD-----SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
+|.||+||++..++...... ....++|+|++|++++|+| ++++.+ +.|+.|||+|+|+++++||+|+|+.|
T Consensus 3381 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~v---p~G~~GEL~i~G~~v~~GY~~~~~~T 3456 (3956)
T PRK12467 3381 TNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPV---PVGVAGELYIGGVGLARGYHQRPSLT 3456 (3956)
T ss_pred EeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCCCCC---CCCCCceEEEcchhhhhhccCCcccc
Confidence 99999999988776543321 1237899999999999999 666654 58999999999999999999999999
Q ss_pred HhhhccCCCc-------eEEcccc
Q 009160 524 KEVYKVMLDR-------FMLMVAL 540 (541)
Q Consensus 524 ~~~f~~d~dG-------w~~~~~~ 540 (541)
+++| ..|+ ||+|+|+
T Consensus 3457 ~~~F--~~~p~~~~g~r~yrTGDl 3478 (3956)
T PRK12467 3457 AERF--VADPFSGSGGRLYRTGDL 3478 (3956)
T ss_pred hhhc--cCCCCCCCCceeeccchh
Confidence 9999 4444 5888775
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=419.31 Aligned_cols=399 Identities=18% Similarity=0.224 Sum_probs=315.2
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERV 134 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V 134 (541)
.+.|+.++|++++..+|+++|+.+ ++. ..+.+||.||.++++++|.+|.+ .|+++|++|
T Consensus 8 ~~~~~~~~l~~~a~~~~~~~a~~~------------~~~--------~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V 67 (576)
T PRK05620 8 VPLSLTRILEYGSTVHGDTTVTTW------------GGA--------EQEQTTFAAIGARAAALAHALHDELGITGDQRV 67 (576)
T ss_pred CCCcHHHHHHHHHHhCCCceEEEE------------cCC--------ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 346899999999999999999976 221 23589999999999999999986 799999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++|+.+++++++||+++|++++|+++..+.+++.++++.++++++|++....+.+.+....++..+.++..+.....
T Consensus 68 ~~~~~n~~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (576)
T PRK05620 68 GSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDAD 147 (576)
T ss_pred EEEeCCCHHHHHHHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccc
Confidence 99999999999999999999999999999999999999999999999999988777777666666666767666543211
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHH--hhCCCCCCC
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM--TIVPDLGSK 292 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~--~~~~~~~~~ 292 (541)
. ..........+.+|+++.+.... ..+.....++++++++|||||||.||||+++|+++........ ..+ .+..+
T Consensus 148 ~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~ 224 (576)
T PRK05620 148 S-AAAHMPEGIKVYSYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHG 224 (576)
T ss_pred c-chhccccccccccHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCC
Confidence 1 00011012345678888764322 2223345678999999999999999999999999876554332 235 67889
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEe----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHh
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 368 (541)
|++++.+|++|.+++...+.++..|+++++ +++..+++. ++++++|.++++|+++..+.......
T Consensus 225 ~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~ 293 (576)
T PRK05620 225 ESFLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKI-----------IATAMPRVAHGVPTLWIQLMVHYLKN 293 (576)
T ss_pred CeEEEeCChHHhhhhHHHHHHHhcCceEEecCCCCCHHHHHHH-----------HHHhcCceeeecCHHHHHHHHHhhcc
Confidence 999999999999999888888999999988 345555555 99999999999999998877543211
Q ss_pred hhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcc
Q 009160 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPI 448 (541)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v 448 (541)
... ..++|.+++||+++++++.+.+++.+|+++
T Consensus 294 ~~~-----------------------------------------------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~ 326 (576)
T PRK05620 294 PPE-----------------------------------------------RMSLQEIYVGGSAVPPILIKAWEERYGVDV 326 (576)
T ss_pred Ccc-----------------------------------------------cCceeEEEEcCCCCCHHHHHHHHHHhCCce
Confidence 000 027999999999999999999999999999
Q ss_pred eeccCcccccccccccCCCC--------CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCc
Q 009160 449 GQGYGLTETCAGGTFSEVDD--------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~~--------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~ 520 (541)
++.||+||++..++...+.+ ....++|++.++++++|+| + ++..+ ..++..|||+|+|+.++.|||+++
T Consensus 327 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~-~~~~~~Gel~v~g~~~~~gY~~~~ 403 (576)
T PRK05620 327 VHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVME-STDRNEGEIQVRGNWVTASYYHSP 403 (576)
T ss_pred eeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-Ccccc-CCCCCceEEEEEcCcccccccCCc
Confidence 99999999987665443321 1124789999999999999 3 54432 234578999999999999999999
Q ss_pred hhh----------------HhhhccCCCceEEcccc
Q 009160 521 EKT----------------KEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 521 ~~t----------------~~~f~~d~dGw~~~~~~ 540 (541)
+.| +++| +.+|||+|+|+
T Consensus 404 ~~t~~~~~~~f~~~~~~~~~~~~--~~~g~~~TGD~ 437 (576)
T PRK05620 404 TEEGGGAASTFRGEDVEDANDRF--TADGWLRTGDV 437 (576)
T ss_pred cccccccccccccccchhhhccc--ccCCcEecCce
Confidence 988 3344 56788888874
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=412.93 Aligned_cols=362 Identities=26% Similarity=0.341 Sum_probs=298.7
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+.|+.+.|+++++++|+++|+.+ ++ +.+||.|+.++++++|+.|.+.|+++|++|++
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~------------~~-----------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i 57 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEF------------EE-----------KKVTFMELHEAVVSVAGKLAALGVKKGDRVAL 57 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEe------------CC-----------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 33 37999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++++++++||+++|++++|+++..+.+++.+++++++++.+++++.....+....
T Consensus 58 ~~~~~~~~~~~~la~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-------------------- 117 (483)
T PRK03640 58 LMKNGMEMILVIHALQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-------------------- 117 (483)
T ss_pred ECCCCHHHHHHHHHHHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc--------------------
Confidence 999999999999999999999999999999999999999999999999876544332210
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
...++++...............++++++++|||||||.||+|+++|.++...+......+ +++++|+++
T Consensus 118 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l 186 (483)
T PRK03640 118 ----------SVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCWL 186 (483)
T ss_pred ----------cccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEEE
Confidence 011333332221222222345678999999999999999999999999988877766666 889999999
Q ss_pred EccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccC
Q 009160 297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (541)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 373 (541)
+.+|++|++++..++.++..|+++++ .++..+.+. ++++++|++.++|+++..+.+..... .
T Consensus 187 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~P~~~~~l~~~~~~~-~--- 251 (483)
T PRK03640 187 AAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKL-----------LQTGGVTIISVVSTMLQRLLERLGEG-T--- 251 (483)
T ss_pred EecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHhCCcEEEeHHHHHHHHHhCcCcc-c---
Confidence 99999999999888888999999988 555556666 99999999999999999887532110 0
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccC
Q 009160 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG 453 (541)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG 453 (541)
...++|.+++||+++++++.++++.. ++++++.||
T Consensus 252 --------------------------------------------~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG 286 (483)
T PRK03640 252 --------------------------------------------YPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYG 286 (483)
T ss_pred --------------------------------------------cCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeec
Confidence 01289999999999999999988875 999999999
Q ss_pred cccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCC
Q 009160 454 LTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVML 531 (541)
Q Consensus 454 ~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~ 531 (541)
+||++..+...... ....+++|+|+++++++|+| + ++ +++.|..|||+|+|++++.||+++++.+.+.| .
T Consensus 287 ~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~-~-~~---~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~ 358 (483)
T PRK03640 287 MTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEK-D-GV---VVPPFEEGEIVVKGPNVTKGYLNREDATRETF---Q 358 (483)
T ss_pred cCcccccccccCcccccccCCCcccccCCcEEEEec-C-CC---cCCCCCceEEEEECcchhhhhcCCHHHHHHHH---h
Confidence 99987644333322 24568999999999999998 3 33 25578899999999999999999999999988 5
Q ss_pred CceEEcccc
Q 009160 532 DRFMLMVAL 540 (541)
Q Consensus 532 dGw~~~~~~ 540 (541)
+|||+|+|+
T Consensus 359 ~~~~~tGDl 367 (483)
T PRK03640 359 DGWFKTGDI 367 (483)
T ss_pred cCCeeccce
Confidence 788887774
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=436.75 Aligned_cols=377 Identities=21% Similarity=0.235 Sum_probs=287.3
Q ss_pred CCCCHHHHHHHHHHHcCC-CCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 56 GISTLAELFEQSCKEHGD-KYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~-~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
...|+.++|.++++++|+ ++|+.. .+ ++.+||+||.++++++|++|.+. +++||+|
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~------------~~----------~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V 258 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIED------------VN----------FTPDSYRKLLKKTLFVGRILEKY-SVEGERI 258 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEc------------CC----------CCcccHHHHHHHHHHHHHHHHHh-cCCCceE
Confidence 457899999999999998 577753 11 13699999999999999999887 5999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHH--HhhcCCCCccEEEEecCCC
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLV--DLSGQLDTVKHVICMDANI 212 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~ii~~~~~~ 212 (541)
+++++|++||+++++||+++|++++|+++.++++++.+++++++++++|++.+..+... .....++.... +.+++..
T Consensus 259 al~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 337 (718)
T PRK08043 259 GLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLK 337 (718)
T ss_pred EEEcCCcHHHHHHHHHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhh
Confidence 99999999999999999999999999999999999999999999999999876543211 11111122222 2222110
Q ss_pred ccccccccccCCeEEeeHHHH--H-hcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 213 PSAVSSVEQSGRWKITSFADV--Q-ILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
.. ..+.+. . ..............++|+++|+|||||||.||||++||+++++.+......+ ++
T Consensus 338 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~~ 403 (718)
T PRK08043 338 DD-------------VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-DF 403 (718)
T ss_pred hh-------------cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-CC
Confidence 00 001110 0 0000001111234679999999999999999999999999999888877777 88
Q ss_pred CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCC----cccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
+++|++++.+|++|.+++.. ++.++..|+++++.+ +..+.+. ++++++|+++++|+++..+.+.
T Consensus 404 ~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~l~~~ 472 (718)
T PRK08043 404 TPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL-----------VYDRNCTVLFGTSTFLGNYARF 472 (718)
T ss_pred CccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHH-----------HHhcCCeEEEchHHHHHHhhhh
Confidence 99999999999999999876 677899999998832 2233344 8899999999999998765432
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~ 444 (541)
.. . ...++||.+++||+++++++.+.+++.+
T Consensus 473 ~~-~------------------------------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~ 503 (718)
T PRK08043 473 AN-P------------------------------------------------YDFARLRYVVAGAEKLQESTKQLWQDKF 503 (718)
T ss_pred cC-c------------------------------------------------ccccceEEEEEeCccCCHHHHHHHHHHc
Confidence 00 0 0013899999999999999999999999
Q ss_pred CCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCC--Cchh
Q 009160 445 GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK--NEEK 522 (541)
Q Consensus 445 g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~--~~~~ 522 (541)
|+++++.||+||+++.++...+...+.+++|+|+|+++++|+| +++ .++.|||+|+|++++.|||+ +++.
T Consensus 504 g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d-~~~-------~~~~Gel~v~g~~v~~GY~~~e~~~~ 575 (718)
T PRK08043 504 GLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLS-VPG-------IEQGGRLQLKGPNIMNGYLRVEKPGV 575 (718)
T ss_pred CCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEec-CCC-------CCCceEEEEecCCccccccCCCCccc
Confidence 9999999999999877665544445679999999999999998 333 23569999999999999998 4542
Q ss_pred -------hHhhhccCCCceEEcccc
Q 009160 523 -------TKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 523 -------t~~~f~~d~dGw~~~~~~ 540 (541)
+.+.+ +.+|||+|+|+
T Consensus 576 ~~~~~~~~~~~~--~~~gw~~TGDl 598 (718)
T PRK08043 576 LEVPTAENARGE--MERGWYDTGDI 598 (718)
T ss_pred cccccccccccc--ccCCeEecCCE
Confidence 22233 35678887774
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=414.31 Aligned_cols=370 Identities=25% Similarity=0.300 Sum_probs=301.3
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAI 136 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i 136 (541)
..+.+.|++.|+++|+++|+.+ +++ .+||.|+.++++++|..|.+ .|+.+|++|++
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i 58 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIIT------------EEE-----------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAI 58 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEE------------CCc-----------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 3588999999999999999986 444 79999999999999999986 69999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++++++++||+++|++++|+++.++++++.++++.+++++++++++..+.+.+..... ....++.++
T Consensus 59 ~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~------- 130 (496)
T PRK06839 59 LSQNSLEYIVLLFAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVS-YVQRVISIT------- 130 (496)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhcc-CcceEEEec-------
Confidence 999999999999999999999999999999999999999999999999987766555543322 112222222
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
+++++... .........++++++|+|||||||.||+|.++|+++..........+ .+..+|+++
T Consensus 131 ------------~~~~~~~~---~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l 194 (496)
T PRK06839 131 ------------SLKEIEDR---KIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRSI 194 (496)
T ss_pred ------------chHhhhcc---CCCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeEE
Confidence 22222221 11222345678999999999999999999999999987766666666 788999999
Q ss_pred EccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhcc
Q 009160 297 AYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK 372 (541)
Q Consensus 297 ~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 372 (541)
+.+|++|..++.. .+.++..|+++++ .++..+++. ++++++|++.++|.+++.+.+......
T Consensus 195 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~--- 260 (496)
T PRK06839 195 VLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSM-----------IEKHKVTVVMGVPTIHQALINCSKFET--- 260 (496)
T ss_pred EeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHH-----------HHhhCCeEEEehHHHHHHHHhCccccc---
Confidence 9999999998876 4677999999988 555556666 999999999999999998876421100
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceecc
Q 009160 373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGY 452 (541)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~Y 452 (541)
...+++|.+++||+++++++.+.+++. |+++.+.|
T Consensus 261 --------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~Y 295 (496)
T PRK06839 261 --------------------------------------------TNLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGF 295 (496)
T ss_pred --------------------------------------------CCCcccceEEECCCCCCHHHHHHHHHh-CCeeEeec
Confidence 011389999999999999999999887 99999999
Q ss_pred CcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccC
Q 009160 453 GLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVM 530 (541)
Q Consensus 453 G~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d 530 (541)
|+||++..++..... ....+++|+|+++++++|+| ++++. ++.|+.|||+|+|+.++.||+++++.++..+
T Consensus 296 G~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--- 368 (496)
T PRK06839 296 GMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELID-ENKNK---VEVGEVGELLIRGPNVMKEYWNRPDATEETI--- 368 (496)
T ss_pred cCCCCCcceEecccccccccCCCCcccCCCceEEEEC-CCcCC---CCCCCceEEEEECCCcchhhcCChHHHHHHH---
Confidence 999998755433222 24568999999999999999 66665 3478899999999999999999999998887
Q ss_pred CCceEEcccc
Q 009160 531 LDRFMLMVAL 540 (541)
Q Consensus 531 ~dGw~~~~~~ 540 (541)
.||||+|+|+
T Consensus 369 ~~g~~~TGDl 378 (496)
T PRK06839 369 QDGWLCTGDL 378 (496)
T ss_pred cCCCeeecce
Confidence 5788887774
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=418.79 Aligned_cols=387 Identities=20% Similarity=0.259 Sum_probs=304.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...|+.+++.+.++++|+++|+.+.. +|+ .+||.||.++++++|+.|.+.|+++|++|
T Consensus 25 ~~~~~~~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V 83 (546)
T PLN02330 25 PDKLTLPDFVLQDAELYADKVAFVEAV----------TGK-----------AVTYGEVVRDTRRFAKALRSLGLRKGQVV 83 (546)
T ss_pred CCCCcHHHHHhhhhhcCCCccEEEecC----------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEE
Confidence 345789999999999999999997521 233 69999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++|+++++++++||+++|++++|+++..+.+++.+++++++++++++++.....+.... . .++.++....
T Consensus 84 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-----~-~~i~~~~~~~- 156 (546)
T PLN02330 84 VVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG-----L-PVIVLGEEKI- 156 (546)
T ss_pred EEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC-----C-cEEEecCCCC-
Confidence 99999999999999999999999999999999999999999999999999988776654431 1 2344432210
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCC--CCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC-CCCCC
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENP--VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-PDLGS 291 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~ 291 (541)
.....|+++........ .......++++++|+|||||||.||||+++|+++...+....... +....
T Consensus 157 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~ 226 (546)
T PLN02330 157 ----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIG 226 (546)
T ss_pred ----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccC
Confidence 11234666654332221 122344578999999999999999999999999988765432222 12234
Q ss_pred CcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
.++.+..+|++|.+++.. ++.++..|+++++ +++..+++. ++++++|++.++|.++..+.+....
T Consensus 227 ~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~ 295 (546)
T PLN02330 227 QVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNA-----------LITQEVSFAPIVPPIILNLVKNPIV 295 (546)
T ss_pred ceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHH-----------HHHcCCeeeecCCHHHHHHHhCccc
Confidence 578999999999999875 5677999999888 566666666 9999999999999999988753110
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CC
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GA 446 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~ 446 (541)
.-.. +. ..++|.+++||+++++++.+++++.| |+
T Consensus 296 ~~~~---------------------------------------~~------~~~l~~i~~~g~~l~~~~~~~~~~~~~~~ 330 (546)
T PLN02330 296 EEFD---------------------------------------LS------KLKLQAIMTAAAPLAPELLTAFEAKFPGV 330 (546)
T ss_pred cccc---------------------------------------cc------hheeeeEEEcCCcCCHHHHHHHHHHcCCC
Confidence 0000 00 01589999999999999999999998 89
Q ss_pred cceeccCcccccccccccC-CC----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 447 PIGQGYGLTETCAGGTFSE-VD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~-~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
++++.||+||++.+..... +. ....+++|.|+++++++|+|.++++.+ +.|+.|||+|+|++++.||+++++
T Consensus 331 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~---p~g~~Gel~v~g~~~~~gy~~~~~ 407 (546)
T PLN02330 331 QVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL---PKNTPGELCVRSQCVMQGYYNNKE 407 (546)
T ss_pred eEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC---CCCCceEEEEecchhhhhhccCcc
Confidence 9999999999876543221 11 123468999999999999996566654 478899999999999999999999
Q ss_pred hhHhhhccCCCceEEcccc
Q 009160 522 KTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~~ 540 (541)
.+++.| +.+|||+|+|+
T Consensus 408 ~~~~~~--~~~g~~~TGD~ 424 (546)
T PLN02330 408 ETDRTI--DEDGWLHTGDI 424 (546)
T ss_pred chhhhc--cCCCceecccE
Confidence 999988 88999999874
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=421.79 Aligned_cols=383 Identities=20% Similarity=0.244 Sum_probs=291.4
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+.++.+.|.++|+++|+++|+... ++. +.+||+||.++++++|+.|.+.|+++|++|++
T Consensus 13 ~~~~~~~l~~~a~~~p~~~a~~~~-----------~~~----------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i 71 (540)
T PRK05857 13 PSTVLDRVFEQARQQPEAIALRRC-----------DGT----------SALRYRELVAEVGGLAADLRAQSVSRGSRVLV 71 (540)
T ss_pred CcchHHHHHHHHhhCCCcEEEeec-----------CCC----------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence 358999999999999999999752 332 36999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++++++++||+++|++++|+++.++.+++.++++.++++++|++.........+........ ++.++......
T Consensus 72 ~~~~~~e~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 149 (540)
T PRK05857 72 ISDNGPETYLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIP-VIAVDIAAVTR- 149 (540)
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccc-eeEeecccccc-
Confidence 9999999999999999999999999999999999999999999999999765322211111111222 22222211000
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh----hCCCCCCC
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT----IVPDLGSK 292 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~~ 292 (541)
.. .+.+ ....+.......++++++++|||||||.||||+++|+++.+....... .+ ....+
T Consensus 150 --------~~---~~~~---~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~-~~~~~ 214 (540)
T PRK05857 150 --------ES---EHSL---DAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWV-TWVVG 214 (540)
T ss_pred --------cc---cccc---cccccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccc-ccccC
Confidence 00 0000 000111123346789999999999999999999999999876554322 12 45578
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEe--CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
|+.++.+|++|..++...+.+++.|+++++ .++..+++. ++++++|+++++|+++..+.+......
T Consensus 215 ~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~-----------i~~~~it~~~~~P~~~~~l~~~~~~~~- 282 (540)
T PRK05857 215 ETTYSPLPATHIGGLWWILTCLMHGGLCVTGGENTTSLLEI-----------LTTNAVATTCLVPTLLSKLVSELKSAN- 282 (540)
T ss_pred ceeeecCCccccchHHHHHHHhhcceeEEecCCChhHHHHH-----------HHhcCcceEEeChHHHHHHHhccccCC-
Confidence 899999999999999888888999999877 555566666 999999999999999998876422110
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
...+++|.+++||++++....+++ +.+|+++++
T Consensus 283 ----------------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~ 315 (540)
T PRK05857 283 ----------------------------------------------ATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQ 315 (540)
T ss_pred ----------------------------------------------CcCccceEEEEcCccCCchhHHHH-HHhCCeeec
Confidence 011389999999999998887655 467999999
Q ss_pred ccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCc-cC--CCCCCCccEEEEccCCcccccCCCchh
Q 009160 451 GYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGY-LT--SDSPMPRGEIVIAGPNVTVGYFKNEEK 522 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~-~~--~~~~g~~GEi~v~g~~v~~GY~~~~~~ 522 (541)
.||+||++......... ..+.+++|+|++|++++|+| +++.. .+ .++.++.|||+|+|++++.|||++++.
T Consensus 316 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~ 394 (540)
T PRK05857 316 VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPER 394 (540)
T ss_pred ccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccc
Confidence 99999987543322221 12458999999999999999 55542 22 123578899999999999999999999
Q ss_pred hHhhhccCCCceEEcccc
Q 009160 523 TKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 523 t~~~f~~d~dGw~~~~~~ 540 (541)
|++.| .||||+|+|+
T Consensus 395 t~~~~---~~g~~~TGDl 409 (540)
T PRK05857 395 TAEVL---IDGWVNTGDL 409 (540)
T ss_pred hhhhc---CCCceeccce
Confidence 99988 4788888774
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=413.91 Aligned_cols=392 Identities=20% Similarity=0.234 Sum_probs=308.3
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
+..++.++|++.++++|+++|+.+. ++ .++++.+||.||.++++++|+.|.+.|+++|++|+
T Consensus 5 ~~~~l~~~~~~~a~~~p~~~a~~~~-----------~~-------~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~ 66 (517)
T PRK08008 5 GGQHLRQMWDDLADVYGHKTALIFE-----------SS-------GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVA 66 (517)
T ss_pred ccccHHHHHHHHHHHCCCceEEEcc-----------cC-------CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 3468999999999999999999863 21 12346899999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcC-CCCccEEEEecCCCcc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ-LDTVKHVICMDANIPS 214 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~ 214 (541)
++++|+.+|+++++||+++|++++++++..+.+++.+++++++++++|++.+..+.+.++... ...++.++..+.....
T Consensus 67 i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (517)
T PRK08008 67 LHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA 146 (517)
T ss_pred EEcCCCHHHHHHHHHHHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc
Confidence 999999999999999999999999999999999999999999999999998877766665433 2345566665543211
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
. ....+++++...............++++++|+|||||||.||||+++|+|++.......... .+..+|+
T Consensus 147 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~ 216 (517)
T PRK08008 147 D---------DGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDV 216 (517)
T ss_pred c---------ccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCe
Confidence 1 12234554433222211122345678999999999999999999999999986544333333 5778999
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+++.+|++|..+... ++.++..|+++++ +++..+++. ++++++|++.++|.++..+.........
T Consensus 217 ~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 285 (517)
T PRK08008 217 YLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQ-----------VCKYRATITECIPMMIRTLMVQPPSAND 285 (517)
T ss_pred EEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHH-----------HHHcCCcEEechHHHHHHHHhCCCcccc
Confidence 999999999876655 6778999999988 455556666 9999999999999999887642110000
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
..+++|.+.++ .++++++.+.+.+.+|+++++
T Consensus 286 -----------------------------------------------~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 317 (517)
T PRK08008 286 -----------------------------------------------RQHCLREVMFY-LNLSDQEKDAFEERFGVRLLT 317 (517)
T ss_pred -----------------------------------------------ccccceeeEEe-cCCCHHHHHHHHHHhCCeEEe
Confidence 00267777765 488999999999989999999
Q ss_pred ccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc---CCcccccCCCchhhHhh
Q 009160 451 GYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG---PNVTVGYFKNEEKTKEV 526 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g---~~v~~GY~~~~~~t~~~ 526 (541)
.||+||+++.++..... ....+++|.|+++++++|+| ++++.++ .|+.|||+++| ++++.|||++++.|++.
T Consensus 318 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~---~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~ 393 (517)
T PRK08008 318 SYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRD-DHNRPLP---AGEIGEICIKGVPGKTIFKEYYLDPKATAKV 393 (517)
T ss_pred eccccccccccccCCccccccCCccccCCCCcEEEEEC-CCCCCCC---CCCcceEEEeCCCCcchhhhHhCChHHHhhc
Confidence 99999998655543332 33457899999999999999 6776654 78899999998 68999999999999999
Q ss_pred hccCCCceEEcccc
Q 009160 527 YKVMLDRFMLMVAL 540 (541)
Q Consensus 527 f~~d~dGw~~~~~~ 540 (541)
| +.||||+|+|+
T Consensus 394 ~--~~~g~~~TGDl 405 (517)
T PRK08008 394 L--EADGWLHTGDT 405 (517)
T ss_pred c--cCCCCeeccce
Confidence 9 88899998874
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=416.09 Aligned_cols=383 Identities=21% Similarity=0.291 Sum_probs=307.1
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...|+.++|.+.++++|+++|+.+ +++ .+||.|+.++++++|..|.+.|+++|++|+
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~ 61 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVW------------GDR-----------SWTWREIDARVDALAAALAARGVRKGDRIL 61 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 346799999999999999999976 333 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
++++|+++++++++||+++|++++|+++.++.+++.++++.++++.++++.+..+.+............++.++...
T Consensus 62 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 138 (528)
T PRK07470 62 VHSRNCNQMFESMFAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGAR--- 138 (528)
T ss_pred EEcCCCHHHHHHHHHHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCc---
Confidence 99999999999999999999999999999999999999999999999999887666655544445555666654321
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC-CCCCCCcE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-PDLGSKDV 294 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~d~ 294 (541)
...+++++...............++++++|+|||||||.||||+++|+++...+......+ ......|+
T Consensus 139 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~ 208 (528)
T PRK07470 139 ----------AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA 208 (528)
T ss_pred ----------ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccE
Confidence 1234565554332222233455678999999999999999999999999976655433322 35678899
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEe-----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGY-----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~-----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
++..+|++|.+++...+ .++.|++.++ +++..+++. ++++++|+++++|+++..+.+.....
T Consensus 209 ~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~- 275 (528)
T PRK07470 209 SLVVAPLSHGAGIHQLC-QVARGAATVLLPSERFDPAEVWAL-----------VERHRVTNLFTVPTILKMLVEHPAVD- 275 (528)
T ss_pred EEEeccchhHHHHHHHH-HHhcCceEEEecccCcCHHHHHHH-----------HHhcCCeEEechHHHHHHHHhCcCcC-
Confidence 99999999999987654 5667777665 344445555 99999999999999998886532100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcce
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG 449 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~ 449 (541)
....+++|.+++||+++++++.+++.+.+|..++
T Consensus 276 ----------------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~ 309 (528)
T PRK07470 276 ----------------------------------------------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLV 309 (528)
T ss_pred ----------------------------------------------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHH
Confidence 0011389999999999999999999888899999
Q ss_pred eccCcccccccccccCCC--------CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 450 QGYGLTETCAGGTFSEVD--------DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~--------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
+.||+||+++.++..... ....+++|.|+++++++|+| ++++.+ +.|+.|||+|+|+.++.||+++++
T Consensus 310 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~---~~g~~Gel~i~~~~~~~gy~~~~~ 385 (528)
T PRK07470 310 QYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGREL---PPGETGEICVIGPAVFAGYYNNPE 385 (528)
T ss_pred HhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCC---CCCCceEEEEeCCccchhhcCCHH
Confidence 999999998766543221 22457899999999999999 677764 478899999999999999999999
Q ss_pred hhHhhhccCCCceEEcccc
Q 009160 522 KTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~~ 540 (541)
.+++.| .||||+|+|+
T Consensus 386 ~~~~~~---~~~~~~TGDl 401 (528)
T PRK07470 386 ANAKAF---RDGWFRTGDL 401 (528)
T ss_pred HHHhhh---cCCcEeccee
Confidence 999887 5788888874
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=423.01 Aligned_cols=399 Identities=18% Similarity=0.214 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeC
Q 009160 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFAD 139 (541)
Q Consensus 60 l~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 139 (541)
.+++|+++++.+|+++|+.+.. .. .+..+.+||+||.++++++|++|++.|+++||+|+++++
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~-----------~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~ 117 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVS-----------TE------TDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMP 117 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEc-----------CC------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 5888988888999999998631 00 123357999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc---------hhHHHHhhcCC-CCccEEEEec
Q 009160 140 TRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQL-DTVKHVICMD 209 (541)
Q Consensus 140 ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~-~~~~~ii~~~ 209 (541)
|+++++++++||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.+..... .....++.++
T Consensus 118 n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~ 197 (629)
T PRK10524 118 MIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVD 197 (629)
T ss_pred CCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999997642 22333332222 2345566655
Q ss_pred CCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHH-HhhCCC
Q 009160 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV-MTIVPD 288 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~ 288 (541)
...... .. ......+++++.........+.....++++++|+|||||||.||||+++|++++...... ...+ +
T Consensus 198 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~ 271 (629)
T PRK10524 198 RGLAPM-AR----VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-G 271 (629)
T ss_pred CCCCCc-Cc----ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-C
Confidence 321100 00 001123466654432222222233567899999999999999999999999986554443 3345 7
Q ss_pred CCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCC-------cccccccchhhhcCcccccccccceEEeecHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT-------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~-------~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 360 (541)
+.++|++++.+|+.|..+... ++.++..|+++++.+ +..+++. ++++++|+++++|++++.
T Consensus 272 ~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~ 340 (629)
T PRK10524 272 GKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRI-----------VEKYKVNRMFSAPTAIRV 340 (629)
T ss_pred CCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHH-----------HHHcCceEEEeCHHHHHH
Confidence 889999999999999888654 677899999988722 3334444 999999999999999988
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHH
Q 009160 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440 (541)
Q Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~ 440 (541)
+.+...... +....++||.+++||+++++++.+++
T Consensus 341 l~~~~~~~~---------------------------------------------~~~~l~~lr~i~~~Ge~l~~~~~~~~ 375 (629)
T PRK10524 341 LKKQDPALL---------------------------------------------RKHDLSSLRALFLAGEPLDEPTASWI 375 (629)
T ss_pred HHhcCcccc---------------------------------------------cccChhheeEEEEeCCCCCHHHHHHH
Confidence 765311000 00011389999999999999999999
Q ss_pred HHHhCCcceeccCcccccccccccCC----CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC---Ccc
Q 009160 441 NICLGAPIGQGYGLTETCAGGTFSEV----DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NVT 513 (541)
Q Consensus 441 ~~~~g~~v~~~YG~TE~~~~~~~~~~----~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~---~v~ 513 (541)
++.+++++++.||+||++........ ...+.+++|+|+++++++|+|.++|+.+ +.|+.|||+|+|| +++
T Consensus 376 ~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~---~~g~~Gel~i~gp~~~~~~ 452 (629)
T PRK10524 376 SEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPC---GPNEKGVLVIEGPLPPGCM 452 (629)
T ss_pred HHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCC---CCCCcEEEEEcCCCChhhc
Confidence 99999999999999999753332221 1234689999999999999994377764 4788999999998 688
Q ss_pred cccCCCchhhHhhhcc-CCCceEEcccc
Q 009160 514 VGYFKNEEKTKEVYKV-MLDRFMLMVAL 540 (541)
Q Consensus 514 ~GY~~~~~~t~~~f~~-d~dGw~~~~~~ 540 (541)
.|||++++.+.+.++. ..+|||+|+|+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~TGDl 480 (629)
T PRK10524 453 QTVWGDDDRFVKTYWSLFGRQVYSTFDW 480 (629)
T ss_pred CCccCChHHHHHhhhccCCCcEEEcCCc
Confidence 9999999988776521 13567777763
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=413.35 Aligned_cols=389 Identities=27% Similarity=0.366 Sum_probs=324.2
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|.++++.+|+++|+.+ .++ .+||+||.++++++|+.|.+.|+++|++|++
T Consensus 5 ~~~l~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l 61 (521)
T PRK06187 5 PLTIGRILRHGARKHPDKEAVYF------------DGR-----------RTTYAELDERVNRLANALRALGVKKGDRVAV 61 (521)
T ss_pred cCCHHHHHHHHHHHCCCceEEEe------------CCc-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 333 5999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+.+++++++||+++|++++|+++.++.+++..+++.+++++++++.+..+.+.++....+..+.++.+++.....
T Consensus 62 ~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 140 (521)
T PRK06187 62 FDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAP- 140 (521)
T ss_pred ECCCCHHHHHHHHHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccc-
Confidence 9999999999999999999999999999999999999999999999999988888877777777777777776544210
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
......++.++....... .......++++++++|||||||.||+|.++|+++..........+ ++..+|+++
T Consensus 141 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~~ 212 (521)
T PRK06187 141 ------LAPEVGEYEELLAAASDT-FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDVYL 212 (521)
T ss_pred ------cccccccHHHHhhcCCcc-CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCEEE
Confidence 112334556654432221 123345678999999999999999999999999998888877777 899999999
Q ss_pred EccChHHHHHHHHHHHHhhcCceEEeCC---cccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccC
Q 009160 297 AYLPLAHVLELVAENLIAGVGSAIGYGT---PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (541)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~v~~~~---~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 373 (541)
+.+|++|.+++...+.++..|+++++.+ +..+.+. ++++++|+++++|+++..+.+......
T Consensus 213 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------l~~~~~t~l~~~p~~~~~l~~~~~~~~---- 277 (521)
T PRK06187 213 VIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDL-----------IETERVTFFFAVPTIWQMLLKAPRAYF---- 277 (521)
T ss_pred EeCCchHHhhHHHHHHHHHhCCEEEecCCCCHHHHHHH-----------HHHhCCeEEEchHHHHHHHHcCcCCCc----
Confidence 9999999999988777999999998843 3444444 999999999999999998876432210
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccC
Q 009160 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG 453 (541)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG 453 (541)
...+++|.+++||++++.++.+.+.+.+++++++.||
T Consensus 278 -------------------------------------------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG 314 (521)
T PRK06187 278 -------------------------------------------VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYG 314 (521)
T ss_pred -------------------------------------------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeec
Confidence 0113899999999999999999999999999999999
Q ss_pred cccccccccccCCCCC------CCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhh
Q 009160 454 LTETCAGGTFSEVDDS------SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 454 ~TE~~~~~~~~~~~~~------~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f 527 (541)
+||+++.+........ ..+++|+|+++++++|+| +++...+ .+.|+.|||+|+|+.++.||+++++.+.+.|
T Consensus 315 ~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~-~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~ 392 (521)
T PRK06187 315 MTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELP-PDGGEVGEIIVRGPWLMQGYWNRPEATAETI 392 (521)
T ss_pred cCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCC-CCCCCeeEEEEECcchhhhhcCCHHHHHHHh
Confidence 9999877665544333 568999999999999999 6776544 2238899999999999999999999999888
Q ss_pred ccCCCceEEcccc
Q 009160 528 KVMLDRFMLMVAL 540 (541)
Q Consensus 528 ~~d~dGw~~~~~~ 540 (541)
.+|||.|+|+
T Consensus 393 ---~~~~~~tGD~ 402 (521)
T PRK06187 393 ---DGGWLHTGDV 402 (521)
T ss_pred ---hCCceeccce
Confidence 5678888774
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-48 Score=412.35 Aligned_cols=374 Identities=26% Similarity=0.346 Sum_probs=308.4
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
+++++|.+.++++|+++|+.+ +++ .+||+||.+++.++|+.|.+.|+.+|++|++++
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~ 57 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVH------------HDR-----------TLTYAALSERVLALASGLRGLGLARGERVAIYL 57 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 478999999999999999986 333 699999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+.+++++++||+++|++++|+++.++.+++..++++++++++|++.+..+.+.+....++....++.+++......
T Consensus 58 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (515)
T TIGR03098 58 DKRLETVTAMFGAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASE-- 135 (515)
T ss_pred CCCHHHHHHHHHHHhcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccC--
Confidence 999999999999999999999999999999999999999999999998777666555555556666776664432110
Q ss_pred ccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 009160 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY 298 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~ 298 (541)
.......|+++...... ..+.....+++++|+|||||||.||||.+||+++...+......+ .+..+|++++.
T Consensus 136 ----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~ 208 (515)
T TIGR03098 136 ----GGGESPSWPKLLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLAV 208 (515)
T ss_pred ----CccccccHHHhhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEEE
Confidence 12234456666543221 122344568999999999999999999999999999888877777 78899999999
Q ss_pred cChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCch
Q 009160 299 LPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL 375 (541)
Q Consensus 299 ~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~ 375 (541)
+|++|.+++...+.++..|+++++ .++..+.+. ++++++|++.++|+++..+.+.....
T Consensus 209 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~------- 270 (515)
T TIGR03098 209 LPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKA-----------LEKHGITGLAAVPPLWAQLAQLDWPE------- 270 (515)
T ss_pred CchhhHhHHHHHHHHHHcCCEEEEcCCCCHHHHHHH-----------HHHcCCceEecChHHHHHHHhcccCC-------
Confidence 999999999888899999999988 455566666 99999999999999998876521000
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcceeccCc
Q 009160 376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGL 454 (541)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~ 454 (541)
....++|.+++||+++++++.+.+++.+ ++.+++.||+
T Consensus 271 -----------------------------------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~ 309 (515)
T TIGR03098 271 -----------------------------------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGL 309 (515)
T ss_pred -----------------------------------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeecc
Confidence 0113899999999999999999999988 7889999999
Q ss_pred ccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhh
Q 009160 455 TETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 455 TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f 527 (541)
||++......... ..+++++|+|+++++++|+| ++++.+ +.|+.|||+++|+.++.|||++++.|++.|
T Consensus 310 tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~---~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~ 379 (515)
T TIGR03098 310 TEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLR-EDGSEC---APGEEGELVHRGALVAMGYWNDPEKTAERF 379 (515)
T ss_pred ccccceEecccccccCCCCCcceecCCCEEEEEC-CCCCCC---CCCCceEEEEcCchhhccccCCchhhhhhh
Confidence 9987654433221 34568999999999999999 667654 467899999999999999999999998776
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=432.72 Aligned_cols=357 Identities=21% Similarity=0.283 Sum_probs=284.3
Q ss_pred CHHHHHHHHHHH--cCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 59 TLAELFEQSCKE--HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 59 tl~~~~~~~a~~--~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
++.++|.+++++ +||++|+.. +. .+||+||.++++++|++|.+.|+++|++|+|
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~-------------~~-----------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i 60 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYA-------------AD-----------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLL 60 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEe-------------cC-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 789999998886 799999964 11 5999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|++|.++.+++.+++++++++++|++.+....+... .++
T Consensus 61 ~~~~~~~~~~~~la~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--------~~~---------- 122 (705)
T PRK06060 61 CLPDSPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--------RVA---------- 122 (705)
T ss_pred ECCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--------ccc----------
Confidence 99999999999999999999999999999999999999999999999987644332110 000
Q ss_pred ccccccCCeEEeeHHHHHhcc-cCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHH-hhCCCCCCCcE
Q 009160 217 SSVEQSGRWKITSFADVQILG-RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM-TIVPDLGSKDV 294 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~~~~~~~~d~ 294 (541)
...++.... ...+.......+++++||+|||||||.||||+++|+++++.+.... ..+ .+.+.|+
T Consensus 123 ------------~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~ 189 (705)
T PRK06060 123 ------------EAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPEDT 189 (705)
T ss_pred ------------hhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-CCCCcce
Confidence 001111000 0111112234578999999999999999999999999998877654 345 7888999
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEeCC----cccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYGT----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+++.+|++|.+++.. ++.++..|+++++.+ +..+.+. ++++++|+++++|+++.++.+.....
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~l~~l~~~~~~~- 257 (705)
T PRK06060 190 GLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAIL-----------SARFGPSVLYGVPNFFARVIDSCSPD- 257 (705)
T ss_pred eEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHH-----------HHhcCCeEEeeHHHHHHHHHHhcccc-
Confidence 999999999988754 677899999998832 3333333 88999999999999998887532100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcc
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v 448 (541)
..+++|.+++||+++++++.+.+.+.+ ++++
T Consensus 258 ------------------------------------------------~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~ 289 (705)
T PRK06060 258 ------------------------------------------------SFRSLRCVVSAGEALELGLAERLMEFFGGIPI 289 (705)
T ss_pred ------------------------------------------------cccceeEEEEecCcCCHHHHHHHHHHcCCCce
Confidence 013899999999999999999999988 5899
Q ss_pred eeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhc
Q 009160 449 GQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK 528 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~ 528 (541)
+|.||+||++...........+.+++|+|+++++++|+| ++++.+ +.|+.|||||+|++++.||||+|+.+.
T Consensus 290 ~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~~---~~g~~GEl~i~g~~v~~GY~~~~~~~~---- 361 (705)
T PRK06060 290 LDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVA-PDGTTA---GPGVEGDLWVRGPAIAKGYWNRPDSPV---- 361 (705)
T ss_pred EeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEEC-CCCCCC---CCCCceEEEEccchhhhhhhCCCcccc----
Confidence 999999999765544444445678999999999999999 666543 478899999999999999999998652
Q ss_pred cCCCceEEccc
Q 009160 529 VMLDRFMLMVA 539 (541)
Q Consensus 529 ~d~dGw~~~~~ 539 (541)
..+|||+|+|
T Consensus 362 -~~~~~~~TGD 371 (705)
T PRK06060 362 -ANEGWLDTRD 371 (705)
T ss_pred -cCCCcEECCe
Confidence 3456666665
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=416.37 Aligned_cols=383 Identities=20% Similarity=0.216 Sum_probs=315.1
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...++.+.++++++++|+++|+.+ +++ .+||.||.++++++|.+|.+.|+++|++|+
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~ 71 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRF------------LGN-----------TTTWRELDDRVAALAGALSRRGVGFGDRVL 71 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 446899999999999999999986 343 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
|+++|+++|+++++||+++|++++|+++..+.+++.++++++++++++++....+.+.......+..+.++..++...
T Consensus 72 i~~~~~~~~~~~~~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 149 (542)
T PRK07786 72 ILMLNRTEFVESVLAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSD-- 149 (542)
T ss_pred EECCCCHHHHHHHHHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCc--
Confidence 999999999999999999999999999999999999999999999999998877666555555566677776653211
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC-CCCcE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL-GSKDV 294 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~-~~~d~ 294 (541)
....+++++....... ........+++++++|||||||.||||+++|+++...+......+ ++ ..+|+
T Consensus 150 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~ 218 (542)
T PRK07786 150 ---------DSVLGYEDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-GADINSDV 218 (542)
T ss_pred ---------ccccCHHHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-CCCCCCce
Confidence 1224566665433222 122345567899999999999999999999999998888777766 55 67899
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeC-----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+++.+|++|.+++..++.++..|+++++. +|..+++. ++++++|+++++|.++..+........
T Consensus 219 ~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~l~~l~~~~~~~~ 287 (542)
T PRK07786 219 GFVGVPLFHIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDV-----------LEAEKVTGIFLVPAQWQAVCAEQQARP 287 (542)
T ss_pred EEEecchHHHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHH-----------HHHcCCeEEEehHHHHHHHHhCcccCc
Confidence 99999999999998888899999999873 44455555 999999999999999998876321100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcc
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v 448 (541)
. ..++|.+++||+++++++.+.+++.+ ++++
T Consensus 288 ~------------------------------------------------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l 319 (542)
T PRK07786 288 R------------------------------------------------DLALRVLSWGAAPASDTLLRQMAATFPEAQI 319 (542)
T ss_pred c------------------------------------------------CcceEEEEECCCCCCHHHHHHHHHHcCCCeE
Confidence 0 01699999999999999999999988 7899
Q ss_pred eeccCcccccccccccCCCC--CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhh
Q 009160 449 GQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~ 526 (541)
++.||+||++.+.+...... ...+++|+|+++++++|+| ++++.+ +.|+.|||+++|+.+++||+++++.|++.
T Consensus 320 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~~~~~~~~ 395 (542)
T PRK07786 320 LAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDV---PVGEVGEIVYRAPTLMSGYWNNPEATAEA 395 (542)
T ss_pred EeeecccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCC---cCCCceEEEEEChhhhhhhcCCHHHHHHH
Confidence 99999999987655433222 3458899999999999999 677654 47889999999999999999999999998
Q ss_pred hccCCCceEEcccc
Q 009160 527 YKVMLDRFMLMVAL 540 (541)
Q Consensus 527 f~~d~dGw~~~~~~ 540 (541)
| .+|||+|+|+
T Consensus 396 f---~~~~~~TGDl 406 (542)
T PRK07786 396 F---AGGWFHSGDL 406 (542)
T ss_pred h---hCCcccccce
Confidence 8 4788887764
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=452.01 Aligned_cols=391 Identities=25% Similarity=0.332 Sum_probs=308.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...++.+.|.++++++|+++|+.+. +++ .+||.|+.++++++|+.|.+ ++++||+|
T Consensus 612 ~~~~~l~~~~~~~a~~~p~~~a~~~~-----------~~~-----------~~Ty~el~~~~~~~a~~L~~-~~~~g~~V 668 (1146)
T PRK08633 612 EALPPLAEAWIDTAKRNWSRLAVADS-----------TGG-----------ELSYGKALTGALALARLLKR-ELKDEENV 668 (1146)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEcC-----------CCC-----------cCcHHHHHHHHHHHHHHHHH-hCCCCCeE
Confidence 35678999999999999999999741 233 69999999999999999987 58999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhh--cCCCCccEEEEecCCC
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLS--GQLDTVKHVICMDANI 212 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~ii~~~~~~ 212 (541)
+++++|+++++++++||+++|++++|+++..+++++.++++++++++++++++..+.+.+.. ...+....++..++..
T Consensus 669 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (1146)
T PRK08633 669 GILLPPSVAGALANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLK 748 (1146)
T ss_pred EEECCCchHHHHHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhc
Confidence 99999999999999999999999999999999999999999999999999987665554211 0122333455544321
Q ss_pred ccccccccccCCeEEeeHHHHHhcccCC-----CCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCC
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGREN-----PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~ 287 (541)
... .....+++........ +.......++|+++|+|||||||.||||++||+++...+......+
T Consensus 749 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~- 818 (1146)
T PRK08633 749 AKI---------SKVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF- 818 (1146)
T ss_pred ccc---------chhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-
Confidence 110 0001122211110000 0001345679999999999999999999999999999988887777
Q ss_pred CCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 362 (541)
++.++|++++.+|++|.+++.. .+.+++.|+++++ .++..+.+. ++++++|++.++|++++.+.
T Consensus 819 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~ 887 (1146)
T PRK08633 819 NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKL-----------VAKHRATILLGTPTFLRLYL 887 (1146)
T ss_pred CCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHHH
Confidence 7889999999999999999887 6778999999887 344555555 99999999999999998876
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHH
Q 009160 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~ 442 (541)
+..... +...+++|.+++||+++++++.+.+++
T Consensus 888 ~~~~~~-----------------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~ 920 (1146)
T PRK08633 888 RNKKLH-----------------------------------------------PLMFASLRLVVAGAEKLKPEVADAFEE 920 (1146)
T ss_pred hccccC-----------------------------------------------cccCCCeeeEEEcCCcCCHHHHHHHHH
Confidence 532110 001138999999999999999999999
Q ss_pred HhCCcceeccCcccccccccccCCC----------CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCc
Q 009160 443 CLGAPIGQGYGLTETCAGGTFSEVD----------DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV 512 (541)
Q Consensus 443 ~~g~~v~~~YG~TE~~~~~~~~~~~----------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v 512 (541)
.+|+++++.||+||+++.++...++ ..+.+++|+|+||++++|+|+++++.+ ++|+.|||+|+|+++
T Consensus 921 ~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~---~~g~~Gel~v~g~~~ 997 (1146)
T PRK08633 921 KFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEEL---PPGEDGLILIGGPQV 997 (1146)
T ss_pred HhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccC---CCCCceEEEEcCCCc
Confidence 9999999999999998776544322 124689999999999999996667654 478899999999999
Q ss_pred ccccCCCchhhHhhhccC--CCceEEcccc
Q 009160 513 TVGYFKNEEKTKEVYKVM--LDRFMLMVAL 540 (541)
Q Consensus 513 ~~GY~~~~~~t~~~f~~d--~dGw~~~~~~ 540 (541)
+.||+++|+.|++.| .+ .+|||+|+|+
T Consensus 998 ~~gY~~~~~~t~~~~-~~~~~~~~~~TGD~ 1026 (1146)
T PRK08633 998 MKGYLGDPEKTAEVI-KDIDGIGWYVTGDK 1026 (1146)
T ss_pred cccccCCccchHHHh-hcCCCCCeEECCCE
Confidence 999999999999988 11 2389988874
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-48 Score=415.16 Aligned_cols=395 Identities=23% Similarity=0.330 Sum_probs=307.7
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|+++++++|+++|+.+ +++ .+||.||.++++++|+.|.+.|+++||+|+++
T Consensus 32 ~~l~~~~~~~~~~~p~~~a~~~------------~~~-----------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~ 88 (573)
T PRK05605 32 TTLVDLYDNAVARFGDRPALDF------------FGA-----------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIV 88 (573)
T ss_pred CCHHHHHHHHHHHCCCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 4899999999999999999987 444 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc--
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA-- 215 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~-- 215 (541)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+++.....+.++.... ..+.++.++......
T Consensus 89 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~ 167 (573)
T PRK05605 89 LPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTT-PLETIVSVNMIAAMPLL 167 (573)
T ss_pred CCCCHHHHHHHHHHHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhcc-ccceeEeeecccccccc
Confidence 99999999999999999999999999999999999999999999999887666555443322 233444443211000
Q ss_pred ---c-----ccc------cccCCeEEeeHHHHHhcccCC---CCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHH
Q 009160 216 ---V-----SSV------EQSGRWKITSFADVQILGREN---PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278 (541)
Q Consensus 216 ---~-----~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~ 278 (541)
. ... .........+|+++....... ........++++++++|||||||.||+|.++|+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~ 247 (573)
T PRK05605 168 QRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247 (573)
T ss_pred cccccccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHH
Confidence 0 000 000112334566665432211 01223456789999999999999999999999999887
Q ss_pred HHHHHhhCCC-CCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEee
Q 009160 279 VSAVMTIVPD-LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353 (541)
Q Consensus 279 ~~~~~~~~~~-~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~ 353 (541)
+......+.. ...+|++++.+|++|.+++.. .+.++..|+++++ .++..+++. ++++++|++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~ 316 (573)
T PRK05605 248 AAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDA-----------MKKHPPTWLPG 316 (573)
T ss_pred HHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHhCCEEEEc
Confidence 7654443322 234789999999999999876 5567999999888 455556666 99999999999
Q ss_pred cHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCC
Q 009160 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLS 433 (541)
Q Consensus 354 ~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~ 433 (541)
+|.+++.+.+....... ..+++|.+++||++++
T Consensus 317 ~P~~~~~l~~~~~~~~~-----------------------------------------------~~~~lr~i~~gg~~l~ 349 (573)
T PRK05605 317 VPPLYEKIAEAAEERGV-----------------------------------------------DLSGVRNAFSGAMALP 349 (573)
T ss_pred hHHHHHHHHhCccccCC-----------------------------------------------CchhccEEEECCCcCC
Confidence 99999998764321100 0138999999999999
Q ss_pred HHHHHHHHHHhCCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCC-CCccCCCCCCCccEEEEccCC
Q 009160 434 ADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPE-GGYLTSDSPMPRGEIVIAGPN 511 (541)
Q Consensus 434 ~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~-~~~~~~~~~g~~GEi~v~g~~ 511 (541)
+++.+++.+.+++++++.||+||++++++..... ..+.+++|.|+++++++|+|.++ +.. ++.|..|||+|+|++
T Consensus 350 ~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~~g~~Gel~v~~~~ 426 (573)
T PRK05605 350 VSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDET---MPDGEEGELLVRGPQ 426 (573)
T ss_pred HHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCcc---CCCCCeeEEEEecCc
Confidence 9999999998899999999999998776654433 23468999999999999999444 333 347889999999999
Q ss_pred cccccCCCchhhHhhhccCCCceEEcccc
Q 009160 512 VTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 512 v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++.||+++++.|++.| .+|||+|+|+
T Consensus 427 ~~~gy~~~~~~~~~~~---~~g~~~TGD~ 452 (573)
T PRK05605 427 VFKGYWNRPEETAKSF---LDGWFRTGDV 452 (573)
T ss_pred hhhhhcCChhHhhhcc---cCCCcccCCE
Confidence 9999999999999888 4568777764
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-48 Score=413.83 Aligned_cols=389 Identities=22% Similarity=0.265 Sum_probs=294.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...++.++|.++++++|+++|+.+. ++. +.+||.||.++++++|++|.+.|+++|++|
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V 71 (534)
T PRK05852 13 DFGPRIADLVEVAATRLPEAPALVVT-----------ADR----------IAISYRDLARLVDDLAGQLTRSGLLPGDRV 71 (534)
T ss_pred hhcccHHHHHHHHHHhCCCCcEEEec-----------CCC----------CcccHHHHHHHHHHHHHHHHhcCCCCCCEE
Confidence 45678999999999999999999862 221 369999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+|+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++............ ......+.+......
T Consensus 72 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 149 (534)
T PRK05852 72 ALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT--RWWPLTVNVGGDSGP 149 (534)
T ss_pred EEECCCcHHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc--cccceeeeecccccc
Confidence 999999999999999999999999999999999999999999999999998653321111000 001111111110000
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
. .......+.... ............+++.++|+|||||||.||||+++|+++...+......+ .+..+|+
T Consensus 150 ~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~~d~ 219 (534)
T PRK05852 150 S-------GGTLSVHLDAAT--EPTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDA 219 (534)
T ss_pred c-------cccccccccccc--CCCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCcce
Confidence 0 000000011000 00000111222357889999999999999999999999999988888877 7889999
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEe-----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGY-----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 368 (541)
+++.+|++|.+++.. ++.+++.|+++++ +++..+++. ++++++|.++++|.++..+.+.....
T Consensus 220 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~ 288 (534)
T PRK05852 220 TVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDD-----------IKAVGATWYTAVPTIHQILLERAATE 288 (534)
T ss_pred EEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHH-----------HHHcCCcEEEcChHHHHHHHhhcccc
Confidence 999999999999877 6667889998887 334455666 99999999999999999887643211
Q ss_pred hhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcc
Q 009160 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPI 448 (541)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v 448 (541)
... ...+++|.+++||+++++++.+.+++.+++++
T Consensus 289 ~~~---------------------------------------------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v 323 (534)
T PRK05852 289 PSG---------------------------------------------RKPAALRFIRSCSAPLTAETAQALQTEFAAPV 323 (534)
T ss_pred ccc---------------------------------------------ccCCCeeEEEECCCCCCHHHHHHHHHHhCCCh
Confidence 000 00138999999999999999999999999999
Q ss_pred eeccCcccccccccccCCC-----CCCCCCcCCC--cCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 449 GQGYGLTETCAGGTFSEVD-----DSSVGRVGAP--LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p--~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
++.||+||++..++..... .....++|.+ .++++++|+| ++++.+ ++|+.|||+|+|+++++|||++++
T Consensus 324 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d-~~g~~~---~~g~~Gel~v~g~~v~~gY~~~~~ 399 (534)
T PRK05852 324 VCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVG-SDGLPL---PAGAVGEVWLRGTTVVRGYLGDPT 399 (534)
T ss_pred hhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEEC-CCCCCC---CCCCceEEEEecCcccchhcCCcc
Confidence 9999999998766543321 1111234444 6999999999 677654 478899999999999999999999
Q ss_pred hhHhhhccCCCceEEccc
Q 009160 522 KTKEVYKVMLDRFMLMVA 539 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~ 539 (541)
.|++.| .||||+|+|
T Consensus 400 ~t~~~~---~~g~~~TGD 414 (534)
T PRK05852 400 ITAANF---TDGWLRTGD 414 (534)
T ss_pred cchhhh---cCCCcccCc
Confidence 999988 467777766
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=458.91 Aligned_cols=370 Identities=19% Similarity=0.243 Sum_probs=301.8
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|.++++++|+++|+.+ +++ .+||+||.++++++|+.|.+.|+++|++|+++
T Consensus 458 ~~l~~~~~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~ 514 (1296)
T PRK10252 458 TTLSALVAQQAAKTPDAPALAD------------ARY-----------QFSYREMREQVVALANLLRERGVKPGDSVAVA 514 (1296)
T ss_pred CCHHHHHHHHHHhCCCCeEEEc------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5899999999999999999986 333 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+.+++++++||+++|++++|+++.++.+++.++++++++++++++.+....+... +.+. ++.+
T Consensus 515 ~~~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~----~~~~-~~~~--------- 580 (1296)
T PRK10252 515 LPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV----PDLT-SLCY--------- 580 (1296)
T ss_pred eCCCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC----CCce-eeec---------
Confidence 9999999999999999999999999999999999999999999999998755433221 1110 1111
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
++..... ...+.....+++++||+|||||||.||||+++|+++++.+.+....+ +++++|++++
T Consensus 581 -------------~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~ 644 (1296)
T PRK10252 581 -------------NAPLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQ 644 (1296)
T ss_pred -------------ccccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEE
Confidence 1110000 01111233678999999999999999999999999999999988888 8999999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEeCC------cccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGYGT------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~~~------~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
.+|++|..+++.++.+|+.|+++++.+ +..+.+. ++++++|++.++|+++..+.+........
T Consensus 645 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~ 713 (1296)
T PRK10252 645 KTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQF-----------FAEYGVTTTHFVPSMLAAFVASLTPEGAR 713 (1296)
T ss_pred eCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHH-----------HHHcCCeEEEeCHHHHHHHHhhhcccccc
Confidence 999999999998999999999999844 3334444 89999999999999998887642111000
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceec
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQG 451 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~ 451 (541)
. ...++|.+++||+++++++.+.|++.++++++|.
T Consensus 714 -----------------~----------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~ 748 (1296)
T PRK10252 714 -----------------Q----------------------------SCASLRQVFCSGEALPADLCREWQQLTGAPLHNL 748 (1296)
T ss_pred -----------------c----------------------------cCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeC
Confidence 0 0138999999999999999999999889999999
Q ss_pred cCcccccccccccCCCC-------CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhH
Q 009160 452 YGLTETCAGGTFSEVDD-------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (541)
Q Consensus 452 YG~TE~~~~~~~~~~~~-------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~ 524 (541)
||+||++..++...... ....++|+|++|++++|+| ++++.+ +.|..|||+|+|+++++||+++|+.|+
T Consensus 749 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~---~~g~~Gel~i~g~~~~~GY~~~~~~t~ 824 (1296)
T PRK10252 749 YGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPV---PPGVAGDLYLTGIQLAQGYLGRPDLTA 824 (1296)
T ss_pred CCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEEC-CCCCCC---CCCCceEEEecccccchhhCCCcccch
Confidence 99999987766543321 2346899999999999999 666654 488999999999999999999999999
Q ss_pred hhhccC----CCceEEcccc
Q 009160 525 EVYKVM----LDRFMLMVAL 540 (541)
Q Consensus 525 ~~f~~d----~dGw~~~~~~ 540 (541)
+.|..+ .++||+|+|+
T Consensus 825 ~~f~~~~~~~~~~~y~TGDl 844 (1296)
T PRK10252 825 SRFIADPFAPGERMYRTGDV 844 (1296)
T ss_pred hhcccCCCCCCCEEEecCce
Confidence 999222 2458888874
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=407.94 Aligned_cols=378 Identities=27% Similarity=0.396 Sum_probs=304.3
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.+++..++ .+|++.|+... +++ .+||.||.++++++|++|.+.|+++|++|+++
T Consensus 3 ~~l~~~~~~~~-~~~~~~a~~~~-----------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~ 59 (504)
T PRK07514 3 NNLFDALRAAF-ADRDAPFIETP-----------DGL-----------RYTYGDLDAASARLANLLVALGVKPGDRVAVQ 59 (504)
T ss_pred ccHHHHHHHHh-hCCCCeEEEeC-----------CCC-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 47999999999 99999999752 343 79999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++....+.+....... ....++.++.....
T Consensus 60 ~~~~~e~~v~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--- 135 (504)
T PRK07514 60 VEKSPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA-GAPHVETLDADGTG--- 135 (504)
T ss_pred CCCCHHHHHHHHHHHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc-CCceEEEecCCCcc---
Confidence 99999999999999999999999999999999999999999999999988776665543332 22334444432111
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
.+.+..... ..........++++++|+|||||||.||+|.++|+++...+......+ .+.++|++++
T Consensus 136 -----------~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~ 202 (504)
T PRK07514 136 -----------SLLEAAAAA-PDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLIH 202 (504)
T ss_pred -----------cHHHhhhhc-CcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEEE
Confidence 111111110 111122345678999999999999999999999999999988777777 7889999999
Q ss_pred ccChHHHHHHHH-HHHHhhcCceEEeC---CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccC
Q 009160 298 YLPLAHVLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (541)
Q Consensus 298 ~~pl~h~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 373 (541)
.+|++|..++.. .+.+++.|+++++. ++..+++. + .++|++..+|.++.++.+.....
T Consensus 203 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~~----- 264 (504)
T PRK07514 203 ALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLAL-----------M--PRATVMMGVPTFYTRLLQEPRLT----- 264 (504)
T ss_pred ecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHH-----------H--HhheeeecHHHHHHHHHcCCCCC-----
Confidence 999999999876 66789999999983 44444444 5 47999999999998886531000
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccC
Q 009160 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYG 453 (541)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG 453 (541)
....+++|.+++||+++++++.+++++.+++++++.||
T Consensus 265 ------------------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG 302 (504)
T PRK07514 265 ------------------------------------------REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYG 302 (504)
T ss_pred ------------------------------------------cccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecc
Confidence 00113899999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCc
Q 009160 454 LTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDR 533 (541)
Q Consensus 454 ~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dG 533 (541)
+||++...+.........+++|.|+++++++|+|+++++.+ +.|+.|||+|+|++++.||+++++.+++.| ..+|
T Consensus 303 ~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~---~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~--~~~~ 377 (504)
T PRK07514 303 MTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAEL---PPGEIGMIEVKGPNVFKGYWRMPEKTAEEF--RADG 377 (504)
T ss_pred cccccccccCCccccccCcccccCCCCcEEEEEECCCCCCC---CCCCceEEEEecCCccccccCCchhhhhhc--ccCC
Confidence 99987655433333345688999999999999996666554 477899999999999999999999999999 7788
Q ss_pred eEEcccc
Q 009160 534 FMLMVAL 540 (541)
Q Consensus 534 w~~~~~~ 540 (541)
||+|+|+
T Consensus 378 ~~~TGDl 384 (504)
T PRK07514 378 FFITGDL 384 (504)
T ss_pred Ceeecce
Confidence 9988874
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-48 Score=415.22 Aligned_cols=388 Identities=19% Similarity=0.210 Sum_probs=292.1
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.|+.++|.+.++++|+++|+.+ +++ .+||+||.++++++|++|.++|+++||+|+|+
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~ 70 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIY------------GKT-----------RFTWPQTYDRCCRLAASLISLNITKNDVVSVL 70 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEE------------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 5789999999999999999986 333 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCC-----ccEEEEecCCC
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDT-----VKHVICMDANI 212 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-----~~~ii~~~~~~ 212 (541)
++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.++...++. ...++.++...
T Consensus 71 ~~n~~e~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (579)
T PLN03102 71 APNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEID 150 (579)
T ss_pred cCCcHHHHHHHHHHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccc
Confidence 9999999999999999999999999999999999999999999999998877666655433221 12344444322
Q ss_pred ccccccccccCCeEEeeHHHHHhcccCCCCC----CCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGRENPVD----ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 288 (541)
.... ......+++++.......+.. .....++++++|+|||||||.||||+++|+++..........+ .
T Consensus 151 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~ 223 (579)
T PLN03102 151 FPKR------PSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-E 223 (579)
T ss_pred cccC------CcccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-C
Confidence 1100 011223466655433222111 1234578999999999999999999999999765544444444 5
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 365 (541)
+...+++++.+|++|..++...+.++..|+++++ +++..+++. +++++||+++++|+++..+.+..
T Consensus 224 ~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~ 292 (579)
T PLN03102 224 MGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKN-----------IEMHNVTHMCCVPTVFNILLKGN 292 (579)
T ss_pred CCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHH-----------HHHcCCeEEEeChHHHHHHHhCc
Confidence 6778899999999999998877778888888877 455566666 99999999999999999987632
Q ss_pred HHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhC
Q 009160 366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445 (541)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g 445 (541)
...... ..+++.+++||+++++.+.++++. +|
T Consensus 293 ~~~~~~-----------------------------------------------~~~~~~~~~gg~~~~~~~~~~~~~-~g 324 (579)
T PLN03102 293 SLDLSP-----------------------------------------------RSGPVHVLTGGSPPPAALVKKVQR-LG 324 (579)
T ss_pred ccccCC-----------------------------------------------cccceEEEECCCCCCHHHHHHHHH-cC
Confidence 111000 026788999999999999998876 59
Q ss_pred CcceeccCcccccccccccCCC--------------CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCC
Q 009160 446 APIGQGYGLTETCAGGTFSEVD--------------DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~~~~--------------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~ 511 (541)
+++++.||+||+++.++..... ....+..|.|++++ +++|.+.++.++ .+.++.|||+|+|++
T Consensus 325 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~~~~~~v~-~~~~~~GEl~v~g~~ 401 (579)
T PLN03102 325 FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADV--DVKNKETQESVP-RDGKTMGEIVIKGSS 401 (579)
T ss_pred CeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccce--EEeccccccccC-CCCCCceEEEEECcc
Confidence 9999999999998654322110 01123444555544 555644444443 223467999999999
Q ss_pred cccccCCCchhhHhhhccCCCceEEcccc
Q 009160 512 VTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 512 v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+++|||++|+.|++.| .+|||+|+|+
T Consensus 402 ~~~GY~~~~~~t~~~f---~~gw~~TGDl 427 (579)
T PLN03102 402 IMKGYLKNPKATSEAF---KHGWLNTGDV 427 (579)
T ss_pred hhhhhcCChhhhHhhh---ccCceecCce
Confidence 9999999999999988 5788888874
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-48 Score=408.09 Aligned_cols=362 Identities=21% Similarity=0.253 Sum_probs=293.0
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
++.+.|+++++++|+++|+.+ +++ .+||.||.++++++|++|.+.|. +|++|+|++
T Consensus 2 ~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~ 57 (487)
T PRK07638 2 GITKEYKKHASLQPNKIAIKE------------NDR-----------VLTYKDWFESVCKVANWLNEKES-KNKTIAILL 57 (487)
T ss_pred ChHHHHHHHHHhCCCCeEEec------------CCc-----------EeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEc
Confidence 578999999999999999975 333 79999999999999999999884 899999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+++++++++||+++|++++|+++.++++++.++++.++++++|++......+... ...++.+++
T Consensus 58 ~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~~~~~-------- 123 (487)
T PRK07638 58 ENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------EGRVIEIDE-------- 123 (487)
T ss_pred CCCHHHHHHHHHHHHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------cceEEEehh--------
Confidence 999999999999999999999999999999999999999999999998654433211 012222211
Q ss_pred ccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 009160 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY 298 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~ 298 (541)
+.+..... .....+.....+++++|+|||||||.||||+++|++++..+......+ .+.++|+++..
T Consensus 124 -----------~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~ 190 (487)
T PRK07638 124 -----------WKRMIEKY-LPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVLIA 190 (487)
T ss_pred -----------hhhhhhhc-cccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEEEe
Confidence 11111111 011111223356789999999999999999999999999888777777 78899999999
Q ss_pred cChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCch
Q 009160 299 LPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGL 375 (541)
Q Consensus 299 ~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~ 375 (541)
.|++|..++...+.++..|+++++ +++..+++. ++++++|+++++|+++..+.+... .
T Consensus 191 ~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~--~------ 251 (487)
T PRK07638 191 GTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDK-----------LETENISVMYTVPTMLESLYKENR--V------ 251 (487)
T ss_pred ecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCcC--c------
Confidence 999999888778889999999998 566666666 999999999999999988876310 0
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcceeccCc
Q 009160 376 SKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGL 454 (541)
Q Consensus 376 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~ 454 (541)
..+.+.++++|++++.++.+++++.+ ++.+++.||+
T Consensus 252 -------------------------------------------~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~ 288 (487)
T PRK07638 252 -------------------------------------------IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGA 288 (487)
T ss_pred -------------------------------------------CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecC
Confidence 01456678899999999999999988 7899999999
Q ss_pred ccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCc
Q 009160 455 TETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDR 533 (541)
Q Consensus 455 TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dG 533 (541)
||++..+...... ..+.+++|+|+++++++|+| ++|+.+ ++|+.|||+|+|+.++.|||++++.+.+.+ .||
T Consensus 289 tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g 361 (487)
T PRK07638 289 SELSFVTALVDEESERRPNSVGRPFHNVQVRICN-EAGEEV---QKGEIGTVYVKSPQFFMGYIIGGVLARELN---ADG 361 (487)
T ss_pred CccCceEEecccccCCCCCCCCcccCCcEEEEEC-CCCCCC---CCCCCeEEEEecccceeeecCCHHHHhhhc---cCC
Confidence 9998766544322 33568999999999999999 677654 478899999999999999999998887654 567
Q ss_pred eEEcccc
Q 009160 534 FMLMVAL 540 (541)
Q Consensus 534 w~~~~~~ 540 (541)
||+|+|+
T Consensus 362 ~~~TGDl 368 (487)
T PRK07638 362 WMTVRDV 368 (487)
T ss_pred cEecCcc
Confidence 7777664
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=414.10 Aligned_cols=388 Identities=25% Similarity=0.328 Sum_probs=309.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|.+.++++|+++|+.+. ++. +.+||.||.++++++|..|.+.|+++|++|++
T Consensus 15 ~~~l~~~l~~~~~~~~~~~ai~~~-----------~~~----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i 73 (559)
T PRK08315 15 EQTIGQLLDRTAARYPDREALVYR-----------DQG----------LRWTYREFNEEVDALAKGLLALGIEKGDRVGI 73 (559)
T ss_pred hccHHHHHHHHHHHCCCCeEEEEc-----------CCC----------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 358999999999999999999863 222 36999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchh-----HHHHhhcC-------------
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELK-----KLVDLSGQ------------- 198 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~------------- 198 (541)
+++|+++++++++||+++|++++|+++.++.+++..++++++++++++++.... .+.+....
T Consensus 74 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (559)
T PRK08315 74 WAPNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSAR 153 (559)
T ss_pred ECCCChHHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999875421 12221111
Q ss_pred CCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCC-----CCCCCCCCCCCeEEEEeccCCCCCccEEEechH
Q 009160 199 LDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN-----PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHG 273 (541)
Q Consensus 199 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~ 273 (541)
.+..+.++.++... ......++++....... ........++++++++|||||||.||||.++|+
T Consensus 154 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~ 222 (559)
T PRK08315 154 LPELRRVIFLGDEK-----------HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHR 222 (559)
T ss_pred CCCceeEEeecccC-----------CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHH
Confidence 13344455444321 11234455554432211 111223457889999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe----CCcccccccchhhhcCcccccccccc
Q 009160 274 NVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRP 348 (541)
Q Consensus 274 ~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~ 348 (541)
+++..+......+ +++++|+++..+|++|.+++.. ++.++..|+++++ +++..+++. ++++++
T Consensus 223 ~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----------l~~~~~ 290 (559)
T PRK08315 223 NILNNGYFIGEAM-KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAA-----------VEEERC 290 (559)
T ss_pred HHHHHHHHHHHhc-CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHH-----------HHHcCC
Confidence 9998888877777 8899999999999999999876 6778999999985 566666666 999999
Q ss_pred eEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEc
Q 009160 349 TVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428 (541)
Q Consensus 349 t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~g 428 (541)
|+++++|+++..+........ ...+++|.+++|
T Consensus 291 t~~~~~P~~~~~~~~~~~~~~-----------------------------------------------~~~~~lr~~~~~ 323 (559)
T PRK08315 291 TALYGVPTMFIAELDHPDFAR-----------------------------------------------FDLSSLRTGIMA 323 (559)
T ss_pred eEEecchHHHHHHHhCcccCC-----------------------------------------------CCchhhheeEec
Confidence 999999999987765321100 011389999999
Q ss_pred cCCCCHHHHHHHHHHhCCc-ceeccCcccccccccccCCC---CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccE
Q 009160 429 GAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVD---DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504 (541)
Q Consensus 429 g~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GE 504 (541)
|++++.++.+.+++.++.. +++.||+||++.+++..... ..+..++|+|+++++++|+|.++++.+ +.|+.||
T Consensus 324 G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~---~~g~~GE 400 (559)
T PRK08315 324 GSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETV---PRGEQGE 400 (559)
T ss_pred CCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcC---CCCCceE
Confidence 9999999999999888654 99999999998766544332 234689999999999999995447654 4788999
Q ss_pred EEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 505 IVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 505 i~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+|+|++++.|||++|+.+++.| +.+|||.|+|+
T Consensus 401 l~v~g~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~ 434 (559)
T PRK08315 401 LCTRGYSVMKGYWNDPEKTAEAI--DADGWMHTGDL 434 (559)
T ss_pred EEEECchhhhhhcCChhHHhhcC--CCCCCEEccce
Confidence 99999999999999999999888 77888888874
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=413.64 Aligned_cols=396 Identities=24% Similarity=0.323 Sum_probs=301.0
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVA 135 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~ 135 (541)
..++.++|.++++++|+++|+.. +++ .+||.||.++++++|+.|.+. |+++||+|+
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~ 79 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSN------------LGV-----------TLSYAELERHSAAFAAYLQQHTDLVPGDRIA 79 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEec------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 45899999999999999999975 343 799999999999999999985 999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEec--CCCc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMD--ANIP 213 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~--~~~~ 213 (541)
++++|+++|+++++||+++|++++|+++..+.+++.+++++++++++++++...+.+....... ....++... +...
T Consensus 80 i~~~n~~e~~~~~la~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 158 (562)
T PRK12492 80 VQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT-GIEYLIEAKMGDLLP 158 (562)
T ss_pred EECCCCHHHHHHHHHHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc-CceEEEeechhhccc
Confidence 9999999999999999999999999999999999999999999999999876655444332221 111111110 0000
Q ss_pred ccc--------ccc----cccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH
Q 009160 214 SAV--------SSV----EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281 (541)
Q Consensus 214 ~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~ 281 (541)
... ... .........+|+++...+......+.....+++++|+|||||||.||||+++|+++...+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~ 238 (562)
T PRK12492 159 AAKGWLVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQ 238 (562)
T ss_pred cccchhcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHH
Confidence 000 000 00000122456666554433333334566789999999999999999999999999887766
Q ss_pred HHhhCCC--------CCC-CcEEEEccChHHHHHHHH-HHHHhhcCceEEe-C---CcccccccchhhhcCccccccccc
Q 009160 282 VMTIVPD--------LGS-KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-G---TPLTLTDTSSKIKKGTQGDASVLR 347 (541)
Q Consensus 282 ~~~~~~~--------~~~-~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-~---~~~~l~~~~~~~~~~~~~~i~~~~ 347 (541)
....+.. +.. ++++++.+|++|++++.. .+..+..|+..++ . ++..+++. +++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------i~~~~ 307 (562)
T PRK12492 239 VRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKE-----------LGKWR 307 (562)
T ss_pred HHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHH-----------HHHhC
Confidence 5544311 222 457899999999999876 4556778877665 2 33344444 89999
Q ss_pred ceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEE
Q 009160 348 PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILS 427 (541)
Q Consensus 348 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~ 427 (541)
+|+++++|+++..+.+..... .....++|.+++
T Consensus 308 ~t~~~~~p~~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~~~~ 340 (562)
T PRK12492 308 FSALLGLNTLFVALMDHPGFK-----------------------------------------------DLDFSALKLTNS 340 (562)
T ss_pred CceeeCcHHHHHHHHhCcCcc-----------------------------------------------cccccceeEEEe
Confidence 999999999998876531100 001138999999
Q ss_pred ccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEE
Q 009160 428 GGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIV 506 (541)
Q Consensus 428 gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~ 506 (541)
||+++++++.+.+++.+++++++.||+||+++.++..... ....+++|+|+++++++|+| +++..+ +.|+.|||+
T Consensus 341 gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~---~~g~~Gel~ 416 (562)
T PRK12492 341 GGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNEL---PLGERGELC 416 (562)
T ss_pred ccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCC---CCCCceEEE
Confidence 9999999999999998999999999999998766544322 23458899999999999999 677654 478899999
Q ss_pred EccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 507 IAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 507 v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+|++++.|||++++.|++.| +.+|||+|+|+
T Consensus 417 v~g~~~~~gY~~~~~~t~~~~--~~~g~~~TGD~ 448 (562)
T PRK12492 417 IKGPQVMKGYWQQPEATAEAL--DAEGWFKTGDI 448 (562)
T ss_pred EeCCccccccccCchhhhhcc--cCCCceecCcE
Confidence 999999999999999999988 77899988874
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-49 Score=496.17 Aligned_cols=376 Identities=19% Similarity=0.254 Sum_probs=307.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
++...+++++|+++++++|+++|+.+. ++ .+||+||+++++++|+.|.+.|+++|++
T Consensus 3716 ~~~~~~~~~~~~~~~~~~p~~~Av~~~-----------~~------------~~tY~eL~~~~~~la~~L~~~gv~~~~~ 3772 (4334)
T PRK05691 3716 YPLEQSYVRLFEAQVAAHPQRIAASCL-----------DQ------------QWSYAELNRAANRLGHALRAAGVGVDQP 3772 (4334)
T ss_pred CccccCHHHHHHHHHHhCCCceEEEcC-----------CC------------cccHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 344568999999999999999999873 33 5999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCc--cEEEEecCC
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV--KHVICMDAN 211 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~ii~~~~~ 211 (541)
|+|++++|++++++++||+++|+++|||+|.+|.+++.++++++++++++++....+....+...+... ..++..+
T Consensus 3773 V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 3850 (4334)
T PRK05691 3773 VALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE-- 3850 (4334)
T ss_pred EEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec--
Confidence 999999999999999999999999999999999999999999999999999987655444333222111 1111111
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCC
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (541)
+..........+.....++++|||+|||||||.||||+++|+++++.+.+....+ .+++
T Consensus 3851 --------------------~~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~ 3909 (4334)
T PRK05691 3851 --------------------EVQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSE 3909 (4334)
T ss_pred --------------------ccccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCc
Confidence 1111111111222345789999999999999999999999999999999888888 8999
Q ss_pred CcEEEEccChHHHHHHHHHHHHhhcCceEEeCC------cccccccchhhhcCcccccccccceEEeecHHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~------~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 365 (541)
+|+++...|++|+.+++.++.+|..|+++++.+ +..+.+. ++++++|++.++|+++..+++..
T Consensus 3910 ~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~-----------~~~~~vt~~~~~Ps~~~~l~~~~ 3978 (4334)
T PRK05691 3910 ADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAH-----------VQAQGITVLESVPSLIQGMLAED 3978 (4334)
T ss_pred cceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH-----------HHHcCCeEEEeCHHHHHHHHhhc
Confidence 999999999999999999999999999999833 3445555 99999999999999998886531
Q ss_pred HHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-
Q 009160 366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL- 444 (541)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~- 444 (541)
... .++||.+++||+++++++.+.|.+.+
T Consensus 3979 ~~~--------------------------------------------------~~~lr~~~~gGe~l~~~~~~~~~~~~~ 4008 (4334)
T PRK05691 3979 RQA--------------------------------------------------LDGLRWMLPTGEAMPPELARQWLQRYP 4008 (4334)
T ss_pred ccc--------------------------------------------------CCCceEEEecCCcCCHHHHHHHHHhCC
Confidence 110 13899999999999999999887764
Q ss_pred CCcceeccCcccccccccccCCCC----CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCc
Q 009160 445 GAPIGQGYGLTETCAGGTFSEVDD----SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520 (541)
Q Consensus 445 g~~v~~~YG~TE~~~~~~~~~~~~----~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~ 520 (541)
+++++|.||+|||+..+++..... ....++|+|++|++++|+| +.++.+ +.|.+|||+|+|+++++||+|+|
T Consensus 4009 ~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~---p~g~~GEL~i~G~~v~~GY~~~~ 4084 (4334)
T PRK05691 4009 QIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELV---PLGAVGELCVAGTGVGRGYVGDP 4084 (4334)
T ss_pred CCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCC---CCCCceEEEEecccccccccCCc
Confidence 789999999999998776544322 1235799999999999999 555554 58899999999999999999999
Q ss_pred hhhHhhhccC-----CCceEEcccc
Q 009160 521 EKTKEVYKVM-----LDRFMLMVAL 540 (541)
Q Consensus 521 ~~t~~~f~~d-----~dGw~~~~~~ 540 (541)
+.|+++|..+ .++||+|+|+
T Consensus 4085 ~~t~~~f~~~p~~~~~~~~yrTGDl 4109 (4334)
T PRK05691 4085 LRTALAFVPHPFGAPGERLYRTGDL 4109 (4334)
T ss_pred ccchhhcccCCCCCCCceeeccCcc
Confidence 9999999222 3578888875
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=458.85 Aligned_cols=384 Identities=17% Similarity=0.141 Sum_probs=289.6
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.+++++|+++++++|+++|+.+... ++. .....+.+||+||.++++++|++|.+.|+++|++|+|+
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~---------~~~-----~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~ 301 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPS---------FLD-----PSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIY 301 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccc---------ccc-----ccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5799999999999999999975310 000 00123479999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc---hhHHHHhhcC-C---CCccEEEEecC
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---LKKLVDLSGQ-L---DTVKHVICMDA 210 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---~~~~~~~~~~-~---~~~~~ii~~~~ 210 (541)
++|+++|+++++||+++|++++|++|.++++++.++++.++++++|++... ...+...... . ..+..+...++
T Consensus 302 ~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1389)
T TIGR03443 302 AYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDD 381 (1389)
T ss_pred ecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccc
Confidence 999999999999999999999999999999999999999999999987542 1111111110 0 01111111111
Q ss_pred CCccccccccccCCeEEeeHHHHHhccc--CCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGR--ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 288 (541)
..... .... ....+...... ..........+++++||+|||||||.||||+++|+++++.+.+....+ +
T Consensus 382 ~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~ 452 (1389)
T TIGR03443 382 GSLVG-------GSLE-GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-G 452 (1389)
T ss_pred ccccc-------cccc-cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-C
Confidence 00000 0000 00000000000 001112234678999999999999999999999999999998888888 8
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCc------ccccccchhhhcCcccccccccceEEeecHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTP------LTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~------~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 362 (541)
+.++|++++.+|++|+.++..++.+|+.|+++++.+. ..+.+. ++++++|+++++|+++..+.
T Consensus 453 ~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~-----------i~~~~vt~~~~~Ps~~~~l~ 521 (1389)
T TIGR03443 453 LSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEW-----------MAKYGATVTHLTPAMGQLLS 521 (1389)
T ss_pred CCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHH-----------HHHhCCeEEEeCHHHHHHHH
Confidence 8999999999999999999889999999999998433 344444 99999999999999998775
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHH
Q 009160 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~ 442 (541)
..... ..+++|.+++||+++++++.+.++.
T Consensus 522 ~~~~~--------------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~ 551 (1389)
T TIGR03443 522 AQATT--------------------------------------------------PIPSLHHAFFVGDILTKRDCLRLQT 551 (1389)
T ss_pred hcccc--------------------------------------------------cCCCccEEEEecccCCHHHHHHHHH
Confidence 42100 0138999999999999999988887
Q ss_pred Hh-CCcceeccCcccccccccccCCCC-----------CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 443 CL-GAPIGQGYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 443 ~~-g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
.. +++++|.||+||++..++...... ....++|+|+++++++|+|. ++.. .+++.|..|||+|+|+
T Consensus 552 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~-~~~~-~~~~~G~~GEL~i~G~ 629 (1389)
T TIGR03443 552 LAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNR-NDRT-QTCGVGEVGEIYVRAG 629 (1389)
T ss_pred hCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECC-ccCC-CcCCCCCceEEEeccc
Confidence 65 789999999999987666433211 12367999999999999993 3322 1256889999999999
Q ss_pred CcccccCCCchhhHhhh
Q 009160 511 NVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 511 ~v~~GY~~~~~~t~~~f 527 (541)
++++||+|+|+.|+++|
T Consensus 630 ~v~~GY~~~p~~t~~~f 646 (1389)
T TIGR03443 630 GLAEGYLGLPELNAEKF 646 (1389)
T ss_pred ccchhcCCChhHhhhhc
Confidence 99999999999999998
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=409.26 Aligned_cols=386 Identities=23% Similarity=0.264 Sum_probs=311.2
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|.++++++|+++|+.+ +++ .+||.||.+++.++|..|.+.|+++|++|++
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l 66 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVF------------GDR-----------SWTYAELDAAVNRVAAALLDLGLKKGDRVAA 66 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 333 6999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+.+++++++||+++|++++|+++..+.+++.++++.++++++|++.+....+.+..+.... ..+..........
T Consensus 67 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 144 (523)
T PRK08316 67 LGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPV-DTLILSLVLGGRE- 144 (523)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCc-cceeeeecccccc-
Confidence 99999999999999999999999999999999999999999999999998877766654433321 1111111110000
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
.......++++....... ........+++++|+|||||||.||+|.++|++++..+......+ ++.++|+++
T Consensus 145 ------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~ 216 (523)
T PRK08316 145 ------APGGWLDFADWAEAGSVA-EPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIPL 216 (523)
T ss_pred ------cccchhhHHHHHhcCCCc-cCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceEE
Confidence 112234455554332221 123456678999999999999999999999999999888777777 789999999
Q ss_pred EccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhcc
Q 009160 297 AYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK 372 (541)
Q Consensus 297 ~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 372 (541)
+.+|++|..++.. ++.++..|+++++ .++..+++. ++++++|+++++|.++..+.+.....
T Consensus 217 ~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~---- 281 (523)
T PRK08316 217 HALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRT-----------IEAERITSFFAPPTVWISLLRHPDFD---- 281 (523)
T ss_pred EccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHH-----------HHHhCCeEEEeCHHHHHHHHcCcccc----
Confidence 9999999998876 4556889999988 455556555 99999999999999998876532110
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcceec
Q 009160 373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG 451 (541)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~ 451 (541)
.....++|.+++||++++.++.+.+++.+ ++++++.
T Consensus 282 -------------------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
T PRK08316 282 -------------------------------------------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC 318 (523)
T ss_pred -------------------------------------------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeee
Confidence 00113899999999999999999999987 7899999
Q ss_pred cCcccccccccccCCCC--CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc
Q 009160 452 YGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (541)
Q Consensus 452 YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~ 529 (541)
||+||++.+++.....+ ...+++|+|+++++++|+| ++++..+ .|+.|||+++|++++.||+++++.|++.|
T Consensus 319 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~---~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-- 392 (523)
T PRK08316 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVA---PGEVGEIVHRSPQLMLGYWDDPEKTAEAF-- 392 (523)
T ss_pred ecccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCC---CCCcceEEEECCchhhhhcCCHHHHHHHh--
Confidence 99999988766543322 3458999999999999999 6676544 68899999999999999999999999988
Q ss_pred CCCceEEcccc
Q 009160 530 MLDRFMLMVAL 540 (541)
Q Consensus 530 d~dGw~~~~~~ 540 (541)
.+|||+|+|+
T Consensus 393 -~~~~~~TGDl 402 (523)
T PRK08316 393 -RGGWFHSGDL 402 (523)
T ss_pred -hCCCeeccce
Confidence 5788888874
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=410.47 Aligned_cols=386 Identities=26% Similarity=0.342 Sum_probs=305.4
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|.+.++++|+++|+++.+ ++ +.+||.||.++++++|..|.+.|+++|++|+++
T Consensus 18 ~~l~~~l~~~~~~~p~~~a~~~~~----------~~-----------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~ 76 (558)
T PRK12583 18 QTIGDAFDATVARFPDREALVVRH----------QA-----------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIW 76 (558)
T ss_pred CcHHHHHHHHHHHCCCCeEEEecC----------CC-----------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 579999999999999999998632 22 379999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhc-------------CC
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSG-------------QL 199 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~-------------~~ 199 (541)
++|+++|+++++||+++|++++++++.++.+++.+++++++++++|+++... ..+.+... ..
T Consensus 77 ~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (558)
T PRK12583 77 APNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERL 156 (558)
T ss_pred CCCChHHHHHHHHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccC
Confidence 9999999999999999999999999999999999999999999999976432 22222111 12
Q ss_pred CCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCC-----CCCCCCCCCCCeEEEEeccCCCCCccEEEechHH
Q 009160 200 DTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGREN-----PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGN 274 (541)
Q Consensus 200 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~ 274 (541)
+.++.++.++.... .....|+++...+... ........++++++++|||||||.||||.++|++
T Consensus 157 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~ 225 (558)
T PRK12583 157 PELRGVVSLAPAPP-----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHN 225 (558)
T ss_pred CcceEEEEecCCCC-----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHH
Confidence 23344444432211 1223355444322211 0111234578899999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe----CCcccccccchhhhcCcccccccccce
Q 009160 275 VLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPT 349 (541)
Q Consensus 275 l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t 349 (541)
+.+.+......+ ++..+|++++.+|++|.++... .+.++..|+++++ .++..+++. ++++++|
T Consensus 226 l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~-----------i~~~~~t 293 (558)
T PRK12583 226 ILNNGYFVAESL-GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQA-----------VEEERCT 293 (558)
T ss_pred HHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHH-----------HHHcCCe
Confidence 998888877777 8889999999999999999876 6677999999986 345455555 9999999
Q ss_pred EEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEcc
Q 009160 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGG 429 (541)
Q Consensus 350 ~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg 429 (541)
+++++|+++..+........ ...+++|.+++||
T Consensus 294 ~l~~~P~~~~~l~~~~~~~~-----------------------------------------------~~~~~lr~i~~~G 326 (558)
T PRK12583 294 ALYGVPTMFIAELDHPQRGN-----------------------------------------------FDLSSLRTGIMAG 326 (558)
T ss_pred EEeccHHHHHHHHccccccC-----------------------------------------------CCchhheEEEecC
Confidence 99999999877654211000 0013899999999
Q ss_pred CCCCHHHHHHHHHHhC-CcceeccCcccccccccccCCC---CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEE
Q 009160 430 APLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVD---DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEI 505 (541)
Q Consensus 430 ~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi 505 (541)
+++++++.+++.+.++ ..+++.||+||++.+++..... ..+..++|+|+++++++|+| +++..+ +.|+.|||
T Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~---~~g~~Gel 402 (558)
T PRK12583 327 APCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATV---PRGEIGEL 402 (558)
T ss_pred CCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCCCC---CCCCeeEE
Confidence 9999999999988875 4799999999998876554322 23468999999999999999 556554 47889999
Q ss_pred EEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 506 VIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 506 ~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+|+|+.++.||+++++.+.+.| +.+|||+|+|+
T Consensus 403 ~v~g~~~~~gy~~~~~~~~~~~--~~~~~~~TGDl 435 (558)
T PRK12583 403 CTRGYSVMKGYWNNPEATAESI--DEDGWMHTGDL 435 (558)
T ss_pred EEEeCccchhhcCChHHHHhhc--CCCCCeeccce
Confidence 9999999999999999999888 78899988874
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=405.99 Aligned_cols=381 Identities=22% Similarity=0.314 Sum_probs=310.3
Q ss_pred CCHHHHHHHH-HHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 58 STLAELFEQS-CKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 58 ~tl~~~~~~~-a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
....+++.++ ++.+|+++|+.. +++ .+||.|+.++++++|+.|.+.|+++|++|++
T Consensus 4 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l 60 (508)
T TIGR02262 4 NAAEDLLDRNVVEGRGGKTAFID------------DIS-----------SLSYGELEAQVRRLGAALRRLGVKREERVLL 60 (508)
T ss_pred hHHHHHHHHHHhcccCCceEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4567778776 677999999975 333 6999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+.+|+++++||+++|++++|+++.++.+++.++++.+++++++++....+.+.+....++..+.++..+....
T Consensus 61 ~~~~~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 137 (508)
T TIGR02262 61 LMLDGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEA--- 137 (508)
T ss_pred ECCCCHHHHHHHHHHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCc---
Confidence 99999999999999999999999999999999999999999999999998877777766666667777776654211
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH-HHhhCCCCCCCcEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTIVPDLGSKDVY 295 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~d~~ 295 (541)
....+.++...... ...+....++++++|+|||||||.||||+++|+++...+.. ....+ +++.+|++
T Consensus 138 ---------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~d~~ 206 (508)
T TIGR02262 138 ---------GEVQLAELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-GIREDDVV 206 (508)
T ss_pred ---------ccccHHHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-CCCCCCEE
Confidence 11234443322111 11223455789999999999999999999999999987766 34445 78899999
Q ss_pred EEccChHHHHHHHH-HHHHhhcCceEEe----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 296 LAYLPLAHVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 296 l~~~pl~h~~~~~~-~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
++.+|++|.+++.. ++.++..|+++++ +++..+++. +++++||+++++|.++..+.......
T Consensus 207 l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~~~~~~~~~-- 273 (508)
T TIGR02262 207 FSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDR-----------LRRHQPTIFYGVPTLYAAMLADPNLP-- 273 (508)
T ss_pred EEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHH-----------HHHHCCcEEecchHHHHHHhcCcccc--
Confidence 99999999999866 5667999999888 345555555 99999999999999887765421000
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
...+.++|.+++||+++++++.+.|++.+|+++++
T Consensus 274 ---------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~ 308 (508)
T TIGR02262 274 ---------------------------------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVD 308 (508)
T ss_pred ---------------------------------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhh
Confidence 00113899999999999999999999999999999
Q ss_pred ccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccC
Q 009160 451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVM 530 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d 530 (541)
.||+||++.+.+.....+...+++|+|+++++++|+| ++++.+ ++|..|||+|+|++++.||+++++.|++.|
T Consensus 309 ~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~---~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~--- 381 (508)
T TIGR02262 309 GIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQDV---AAGEPGELLISGPSSATMYWNNRAKTRDTF--- 381 (508)
T ss_pred CccccccCceeecCCccCCCCCCcCCCCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCccccccCCCHHHhHhhh---
Confidence 9999999876665544445568999999999999999 777654 478899999999999999999999999988
Q ss_pred CCceEEcccc
Q 009160 531 LDRFMLMVAL 540 (541)
Q Consensus 531 ~dGw~~~~~~ 540 (541)
.+|||+|+|+
T Consensus 382 ~~~~~~TGD~ 391 (508)
T TIGR02262 382 QGEWTRSGDK 391 (508)
T ss_pred hcCceeccce
Confidence 5789888873
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=408.88 Aligned_cols=376 Identities=20% Similarity=0.244 Sum_probs=297.5
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|+.+++++|++.++.++. +| +++.+||.||.++++++|++|.+.|+++|++|+++
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~----------~~---------~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~ 70 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRV----------EG---------DIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTL 70 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeec----------cC---------cceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 478999999999999998886531 22 23479999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++|+++++||+++|++++|+++.++++++.++++.+++++++++.+..+.+.++......++.++..++......
T Consensus 71 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (539)
T PRK07008 71 AWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPA- 149 (539)
T ss_pred cCCcHHHHHHHHHHHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCcccc-
Confidence 9999999999999999999999999999999999999999999999998877776666656666666666554321110
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH--HHhhCCCCCCCcEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA--VMTIVPDLGSKDVY 295 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~~d~~ 295 (541)
......+++++....... .......++++++++|||||||.||||++||++++..... ....+ ++..+|++
T Consensus 150 -----~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~~ 222 (539)
T PRK07008 150 -----GSTPLLCYETLVGAQDGD-YDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDAV 222 (539)
T ss_pred -----CCcccccHHHHhcccCCC-cCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCceE
Confidence 113355677765432221 1223456788999999999999999999999998754332 22345 67889999
Q ss_pred EEccChHHHHHHHHHHHHhhcCceEEeC----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 296 LAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 296 l~~~pl~h~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
++.+|++|..++...+.++..|+++++. ++..+.+. ++++++|++.++|.++..+.+.......
T Consensus 223 l~~~p~~h~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~-----------l~~~~vt~~~~~P~~~~~l~~~~~~~~~- 290 (539)
T PRK07008 223 LPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYEL-----------IEAERVTFSAGVPTVWLGLLNHMREAGL- 290 (539)
T ss_pred EecCchHHhhhHHHHHHHHhcCceEEEecCCcCHHHHHHH-----------HHHcCCEEEEechHHHHHHHhcccccCC-
Confidence 9999999988877677889999999883 44555555 9999999999999999988764321100
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceec
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQG 451 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~ 451 (541)
..+++|.+++||+++++++.+.+++.+++++++.
T Consensus 291 ----------------------------------------------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~ 324 (539)
T PRK07008 291 ----------------------------------------------RFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHA 324 (539)
T ss_pred ----------------------------------------------CcccceEEEEcCCCCCHHHHHHHHHHhCCceecc
Confidence 0138999999999999999999999999999999
Q ss_pred cCcccccccccccCCCC-----------CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCc
Q 009160 452 YGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520 (541)
Q Consensus 452 YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~ 520 (541)
||+||++..++...... ....++|+|+|+++++|+| ++++..+ .+.+..|||+++|+.++.||++++
T Consensus 325 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~-~~~~~~Gei~v~g~~~~~gy~~~~ 402 (539)
T PRK07008 325 WGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELP-WDGKAFGDLQVRGPWVIDRYFRGD 402 (539)
T ss_pred cccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccC-CCCCcceEEEEeCCccchhhcCCh
Confidence 99999987654332110 1236899999999999999 6666543 222357999999999999999998
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=408.75 Aligned_cols=383 Identities=20% Similarity=0.234 Sum_probs=304.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+.+.++.++|.++++ |+++|+++ +++ .+||.||.++++++|.+|.+.|+++|++|
T Consensus 22 ~~~~~~~~~~~~~a~--p~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~g~~~g~~V 76 (536)
T PRK10946 22 WQDLPLTDILTRHAA--SDAIAVIC------------GER-----------QFSYRELNQASDNLACSLRRQGIKPGDTA 76 (536)
T ss_pred ecCccHHHHHHHhhC--CCCeEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 345789999999887 99999986 333 69999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEec
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMD 209 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~ 209 (541)
+++++|+++|+++++||+++|++++++.+..+.+++..+++.++++++++++... .....+....+..+.++..+
T Consensus 77 ~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 156 (536)
T PRK10946 77 LVQLGNVAEFYITFFALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLN 156 (536)
T ss_pred EEECCChHHHHHHHHHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEec
Confidence 9999999999999999999999888877778888999999999999999986531 12233333445555555543
Q ss_pred CCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
+.. ...+.++...... ........++++++++|||||||.||||+++|+++...+......+ .+
T Consensus 157 ~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~ 220 (536)
T PRK10946 157 DDG--------------EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GF 220 (536)
T ss_pred CCC--------------CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CC
Confidence 211 1123333322211 1122345678999999999999999999999999999998877777 78
Q ss_pred CCCcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
+++|++++.+|++|.+++.. .+.++..|+++++ +++..+.+. ++++++|++.++|.++..+.+.
T Consensus 221 ~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~ 289 (536)
T PRK10946 221 TPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPL-----------IEKHQVNVTALVPPAVSLWLQA 289 (536)
T ss_pred CCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHH-----------HHHhCCcEEEeChHHHHHHHhh
Confidence 89999999999999988764 5778999999988 445455555 9999999999999999998765
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~ 444 (541)
....... ...+++|.+++||+++++++.+.+.+.+
T Consensus 290 ~~~~~~~---------------------------------------------~~~~~l~~v~~gg~~l~~~~~~~~~~~~ 324 (536)
T PRK10946 290 IAEGGSR---------------------------------------------AQLASLKLLQVGGARLSETLARRIPAEL 324 (536)
T ss_pred hcccCcc---------------------------------------------ccccceeEEEECCCCCCHHHHHHHHHhc
Confidence 3211100 0013899999999999999999999999
Q ss_pred CCcceeccCcccccccccccC-CCCCCCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchh
Q 009160 445 GAPIGQGYGLTETCAGGTFSE-VDDSSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522 (541)
Q Consensus 445 g~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~ 522 (541)
|+++++.||+||++...+... ......+++|+|+ |+++++|+| ++++.+ +.|+.|||+|+|++++.|||++++.
T Consensus 325 g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~g~~~~~GY~~~~~~ 400 (536)
T PRK10946 325 GCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPL---PQGEVGRLMTRGPYTFRGYYKSPQH 400 (536)
T ss_pred CCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEEC-CCCCCC---CCCCccEEEEecCccchhhcCCccc
Confidence 999999999999654432221 1223458899999 799999999 677654 4789999999999999999999999
Q ss_pred hHhhhccCCCceEEcccc
Q 009160 523 TKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 523 t~~~f~~d~dGw~~~~~~ 540 (541)
|.+.| +.||||+|+|+
T Consensus 401 t~~~~--~~d~~~~TGDl 416 (536)
T PRK10946 401 NASAF--DANGFYCSGDL 416 (536)
T ss_pred chhhc--ccCCceecCce
Confidence 99999 88899998884
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=487.54 Aligned_cols=374 Identities=21% Similarity=0.226 Sum_probs=304.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...+++++|+++++++|+++|+.+ .++ .+||+||.++++++|+.|.++|+++|++|
T Consensus 1571 ~~~~~~~~~~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V 1627 (3956)
T PRK12467 1571 PLARLVHQLIEDQAAATPEAVALVF------------GEQ-----------ELTYGELNRRANRLAHRLIALGVGPEVLV 1627 (3956)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 4456899999999999999999986 333 69999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++|+++++++++||+++|++++|++|.++.+++.++++++++++++++......+.. .... .++.++...
T Consensus 1628 ~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~----~~~~-~~~~~~~~~-- 1700 (3956)
T PRK12467 1628 GIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPL----PDGL-RSLVLDQED-- 1700 (3956)
T ss_pred EEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCcc----ccCC-cEEEecccc--
Confidence 999999999999999999999999999999999999999999999999998765433211 1111 223322211
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
++.. ......+.....+++++||+|||||||.||||+++|+++++.+.+....+ +++++|+
T Consensus 1701 -----------------~~~~-~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-~~~~~d~ 1761 (3956)
T PRK12467 1701 -----------------DWLE-GYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-QLSAADV 1761 (3956)
T ss_pred -----------------chhc-cCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-CCCcccE
Confidence 0000 01111122345689999999999999999999999999999999888888 8999999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeCC------cccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGT------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~------~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 368 (541)
+++++|++|+++++.++.+|+.|+++++.+ |..+.+. ++++++|++.++|+++..+.+.....
T Consensus 1762 ~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~-----------i~~~~vt~~~~~Ps~~~~l~~~~~~~ 1830 (3956)
T PRK12467 1762 VLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQL-----------IERQQVTTLHFVPSMLQQLLQMDEQV 1830 (3956)
T ss_pred EEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHH-----------HHHcCCeEEECCHHHHHHHHhhcccc
Confidence 999999999999998999999999999843 4445555 99999999999999999887631100
Q ss_pred hhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCc
Q 009160 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAP 447 (541)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~ 447 (541)
. ..+++|.+++||+++++++.+.|.+.+ ++.
T Consensus 1831 -~-----------------------------------------------~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 1862 (3956)
T PRK12467 1831 -E-----------------------------------------------HPLSLRRVVCGGEALEVEALRPWLERLPDTG 1862 (3956)
T ss_pred -c-----------------------------------------------cCCCceEEEEccccCCHHHHHHHHHhCCCCe
Confidence 0 013899999999999999999888776 578
Q ss_pred ceeccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchh
Q 009160 448 IGQGYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522 (541)
Q Consensus 448 v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~ 522 (541)
++|.||+||++..++..... .....++|+|++|++++|+| ++++.+ +.|..|||+|+|+++++||+|+|+.
T Consensus 1863 l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~v---p~G~~GEl~i~G~~v~~GYl~~p~~ 1938 (3956)
T PRK12467 1863 LFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPV---PIGVAGELYLGGVGLARGYLNRPAL 1938 (3956)
T ss_pred EEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CCCCCC---CCCCceEEEeccccccccccCChhh
Confidence 99999999998877654332 12357899999999999999 666654 5889999999999999999999999
Q ss_pred hHhhhccC-----CCceEEcccc
Q 009160 523 TKEVYKVM-----LDRFMLMVAL 540 (541)
Q Consensus 523 t~~~f~~d-----~dGw~~~~~~ 540 (541)
|+++|..+ .++||+|+|+
T Consensus 1939 t~~~f~~~p~~~~~~r~yrTGDl 1961 (3956)
T PRK12467 1939 TAERFVADPFGTVGSRLYRTGDL 1961 (3956)
T ss_pred hhhhCcCCCCCCCCccceeccce
Confidence 99999333 2358888875
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=368.35 Aligned_cols=384 Identities=23% Similarity=0.290 Sum_probs=326.4
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
++...++.+++.++|+++||++|+++ +++ .+||+||+++++++|.+|++.|+++||+
T Consensus 24 yW~d~~l~d~L~~~A~~~pdriAv~d------------~~~-----------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~ 80 (542)
T COG1021 24 YWQDRTLTDILTDHAARYPDRIAVID------------GER-----------RLSYAELDQRADRLAAGLRRLGIKPGDT 80 (542)
T ss_pred cccCCcHHHHHHHHHhhcCCceEEec------------Ccc-----------cccHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 35668999999999999999999985 334 6999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc-----hhHHHHhhcCCCCccEEEEe
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE-----LKKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-----~~~~~~~~~~~~~~~~ii~~ 208 (541)
|.+.++|..|+.+++||++++|+.+|.--|.....+|.+..+.++++.+|.+... .+...+.....+.++++++.
T Consensus 81 vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ 160 (542)
T COG1021 81 VLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVA 160 (542)
T ss_pred EEEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEc
Confidence 9999999999999999999999999999999999999999999999999988643 35556677788889999987
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 288 (541)
++.... ...+...........+..+.++++++++..+.||||.||-+..||.....++....+.+ .
T Consensus 161 ge~~~~-------------~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~ 226 (542)
T COG1021 161 GEAEHP-------------SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-G 226 (542)
T ss_pred cCCCCc-------------chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-C
Confidence 544321 11222333333334445677889999999999999999999999999998888888887 9
Q ss_pred CCCCcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
+++.+++++.+|.+|.|.+.. .+..++.|+++++ .+|...... |+++++|+..+||.+...+++
T Consensus 227 ~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~l-----------Ierh~Vt~tALVPpla~LWlq 295 (542)
T COG1021 227 FDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPL-----------IERHGVTVTALVPPLASLWLQ 295 (542)
T ss_pred cCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHH-----------HHHhccceEEeccHHHHHHHH
Confidence 999999999999999999887 7788999999999 666666666 999999999999999998887
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
....... .++|||.+-+||+.+++++.+++...
T Consensus 296 a~e~~~~-----------------------------------------------~LsSLrllQVGGarl~~~~Arrv~~~ 328 (542)
T COG1021 296 AAEWERA-----------------------------------------------DLSSLRLLQVGGARLSATLARRVPAV 328 (542)
T ss_pred hhhcccC-----------------------------------------------CchheeEEeecCcccCHHHHhhchhh
Confidence 6543221 12499999999999999999999999
Q ss_pred hCCcceeccCcccccccccccCCCCC---CCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCC
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVDDS---SVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~~~---~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~ 519 (541)
+||.+-|.+||.|. ...+..-++. -..+-|+|+ |.=|++|+| .+|+.+. +|++|||.+|||..++|||+.
T Consensus 329 lgC~LQQVFGMAEG--LvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~---pGE~G~LltRGPYTirGYyra 402 (542)
T COG1021 329 LGCQLQQVFGMAEG--LVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVA---PGEVGELLTRGPYTIRGYYRA 402 (542)
T ss_pred hCchHHHHhhhhhh--hhcccccCCchHheeecCCCcCCCcceeEEec-CCCCCCC---CCCcceeeecCCeeeeeeccC
Confidence 99999999999994 3344444432 237899998 778999999 8888754 899999999999999999999
Q ss_pred chhhHhhhccCCCceEEcccc
Q 009160 520 EEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+-++.+| |.||||+++|+
T Consensus 403 p~HNa~aF--~a~GFYrsGD~ 421 (542)
T COG1021 403 PEHNARAF--DADGFYRSGDL 421 (542)
T ss_pred chhhhhcc--CcCCceecCce
Confidence 99999999 99999999985
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=407.13 Aligned_cols=389 Identities=20% Similarity=0.215 Sum_probs=301.8
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
+..++.++|.+.++++|+++|+.. +++ .+||+||.++++++|+.|.+.|+++|++|+
T Consensus 8 ~~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~ 64 (540)
T PRK06164 8 RADTLASLLDAHARARPDAVALID------------EDR-----------PLSRAELRALVDRLAAWLAAQGVRRGDRVA 64 (540)
T ss_pred CCCCHHHHHHHHHHhCCCCeEEec------------CCC-----------cccHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 446899999999999999999974 333 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhc-CCCCccEEEEec
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSG-QLDTVKHVICMD 209 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~-~~~~~~~ii~~~ 209 (541)
++++|+.+|+++++||+++|++++|+++..+.+++.+++++++++++|++.+.. +.+..... ....++.++.++
T Consensus 65 i~~~n~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (540)
T PRK06164 65 VWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVD 144 (540)
T ss_pred EEcCCcHHHHHHHHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEec
Confidence 999999999999999999999999999999999999999999999999987642 11222111 123445566554
Q ss_pred CCCccccccccccCCeEEeeHHHHHhcccCCCC---CCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC
Q 009160 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPV---DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 286 (541)
....... ......+.++......... ......++++++++|||||||.||||+++|+++...+......+
T Consensus 145 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~ 217 (540)
T PRK06164 145 DAADATP-------APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY 217 (540)
T ss_pred cCcccCC-------CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc
Confidence 2111100 0000011111110000000 01233468999999999999999999999999999988888888
Q ss_pred CCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 287 ~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
++..+|++++.+|++|.+++...+.++..|+++++ +++..+++. ++++++|+++++|+++..+.+
T Consensus 218 -~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~l~~l~~ 285 (540)
T PRK06164 218 -GYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARA-----------LRRHRVTHTFGNDEMLRRILD 285 (540)
T ss_pred -CCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeeecCCHHHHHHHHH
Confidence 88899999999999999999888899999999988 455555555 999999999999999998876
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEcc-CCCCHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGG-APLSADTQRFINI 442 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg-~~l~~~~~~~~~~ 442 (541)
..... ...+++|.+..+| ++.+.++.+++..
T Consensus 286 ~~~~~------------------------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~ 317 (540)
T PRK06164 286 TAGER------------------------------------------------ADFPSARLFGFASFAPALGELAALARA 317 (540)
T ss_pred hhccc------------------------------------------------CCCcceeeeeeccCCcchHHHHHHHhh
Confidence 41100 0013788887765 6666777777776
Q ss_pred HhCCcceeccCcccccccccccCCCC---CCCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCC
Q 009160 443 CLGAPIGQGYGLTETCAGGTFSEVDD---SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFK 518 (541)
Q Consensus 443 ~~g~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~ 518 (541)
. |+++++.||+||+++..+...... .+..+.|.|+ ++++++|+|+++++.+ +.|+.|||||+|++++.|||+
T Consensus 318 ~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~---~~g~~Gel~v~g~~~~~gY~~ 393 (540)
T PRK06164 318 R-GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALL---PDGESGEIEIRAPSLMRGYLD 393 (540)
T ss_pred c-CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCC---CCCCeeEEEEecccccccccC
Confidence 6 899999999999987665544322 2235678875 8999999996666654 478899999999999999999
Q ss_pred CchhhHhhhccCCCceEEcccc
Q 009160 519 NEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 519 ~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+++.|++.| +.||||+|+|+
T Consensus 394 ~~~~t~~~~--~~~~~~~TGDl 413 (540)
T PRK06164 394 NPDATARAL--TDDGYFRTGDL 413 (540)
T ss_pred Cchhhhhcc--cCCCceecCCe
Confidence 999999999 88999999884
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=404.84 Aligned_cols=379 Identities=21% Similarity=0.254 Sum_probs=306.3
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...|+.++|.++++++|+++|+.+ +++ .+||.||.++++++++.|.+.|+++|++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~ 66 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVL------------GDT-----------RLTYGQLADRISRYIQAFEALGLGTGDAVA 66 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEE------------CCC-----------cccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 345899999999999999999986 333 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc-chhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK-ELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
++++|+++++++++||++.|++++|+++..+.+++.++++.++++.+++++. ....+.+.....+...+++.++....
T Consensus 67 i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (524)
T PRK06188 67 LLSLNRPEVLMAIGAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPD- 145 (524)
T ss_pred EECCCCHHHHHHHHHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccc-
Confidence 9999999999999999999999999999999999999999999999999876 44444444444455556665543221
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCC--CCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCC
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENP--VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 292 (541)
..++.......+ .......++++++|+|||||||.||+|+++|.++...+......+ .+..+
T Consensus 146 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~ 209 (524)
T PRK06188 146 ---------------GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPAD 209 (524)
T ss_pred ---------------hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcC
Confidence 111111111111 111223456799999999999999999999999999888888777 88899
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
|++++.+|++|..++. .+.++..|+++++ .++..+++. ++++++|+++++|+++..+++......
T Consensus 210 ~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~l~~l~~~~~~~~ 277 (524)
T PRK06188 210 PRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDPAEVLRA-----------IEEQRITATFLVPTMIYALLDHPDLRT 277 (524)
T ss_pred cEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCHHHHHHH-----------HHHhCCEEEEehHHHHHHHHhCcCccC
Confidence 9999999999998875 4667889999998 455566666 999999999999999998876421110
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcce
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG 449 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~ 449 (541)
...+++|.+++||++++++..+.+.+.++..++
T Consensus 278 -----------------------------------------------~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~ 310 (524)
T PRK06188 278 -----------------------------------------------RDLSSLETVYYGASPMSPVRLAEAIERFGPIFA 310 (524)
T ss_pred -----------------------------------------------CCCcceeEEEEcCCCCCHHHHHHHHHHhCchhh
Confidence 011389999999999999998888888899999
Q ss_pred eccCcccccccccccCCC------CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 450 QGYGLTETCAGGTFSEVD------DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
+.||+||++..++..... ....+++|+|+++++++|+| ++++.+ +.|..|||+|+|+.++.||+++++.+
T Consensus 311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~~ 386 (524)
T PRK06188 311 QYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREV---AQGEVGEICVRGPLVMDGYWNRPEET 386 (524)
T ss_pred heeCccccCCceeecCchhccccccccCCccccccCCcEEEEEc-CCCCCC---CCCCeeEEEEECcchhhhhcCChHHh
Confidence 999999997665544322 12457899999999999999 666654 47889999999999999999999999
Q ss_pred HhhhccCCCceEEcccc
Q 009160 524 KEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 524 ~~~f~~d~dGw~~~~~~ 540 (541)
.+.| .+|||+|+|+
T Consensus 387 ~~~~---~~g~~~TGDl 400 (524)
T PRK06188 387 AEAF---RDGWLHTGDV 400 (524)
T ss_pred hhhh---cCCceeecce
Confidence 9888 6788888874
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=414.81 Aligned_cols=380 Identities=19% Similarity=0.194 Sum_probs=287.9
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.+.+.++ .+|+++|+.+.+ . .++.+.+||+||.++++++|++|++.|+++||+|+|+
T Consensus 86 ~n~~~~~~~~--~~~~~~Al~~~~------------~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~ 145 (655)
T PRK03584 86 LNYAENLLRH--RRDDRPAIIFRG------------E------DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAY 145 (655)
T ss_pred eeHHHHhhcc--CCCCCeEEEEEC------------C------CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3555555432 589999998731 1 1234689999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc---------hhHHHHhhcCCCCccEEEEe
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~ii~~ 208 (541)
++|+++++++++||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.++...++.++.++.+
T Consensus 146 ~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 225 (655)
T PRK03584 146 LPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVV 225 (655)
T ss_pred cCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEE
Confidence 999999999999999999999999999999999999999999999998653 23344444555666667766
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHH-HHHHHhhCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT-VSAVMTIVP 287 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~ 287 (541)
+......... .......|+++...............++++++|+|||||||.||||+++|++++.. +......+
T Consensus 226 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~- 300 (655)
T PRK03584 226 PYLGPAAAAA----ALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC- 300 (655)
T ss_pred ecCCCccccc----ccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-
Confidence 5332100000 01123457776552222223334556799999999999999999999999997654 44445556
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 360 (541)
.+.++|+++++.++.|+... ..+.+|+.|+++++. ++..+++. ++++++|++..+|+++..
T Consensus 301 ~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~ 368 (655)
T PRK03584 301 DLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDL-----------AAEEGVTVFGTSAKYLDA 368 (655)
T ss_pred CCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHH-----------HHHHCCEEEEcCHHHHHH
Confidence 78899999999999997543 356789999999883 34445555 999999999999999988
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHH
Q 009160 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440 (541)
Q Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~ 440 (541)
+.+....... ....++||.+++||+++++++.+++
T Consensus 369 l~~~~~~~~~---------------------------------------------~~~l~sLr~i~~~Ge~l~~~~~~~~ 403 (655)
T PRK03584 369 CEKAGLVPGE---------------------------------------------THDLSALRTIGSTGSPLPPEGFDWV 403 (655)
T ss_pred HHhcCCCccc---------------------------------------------cCChhheEEEEEecCCCCHHHHHHH
Confidence 7652100000 0011389999999999999999999
Q ss_pred HHHh--CCcceeccCcccccccccccC-CCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC--Ccccc
Q 009160 441 NICL--GAPIGQGYGLTETCAGGTFSE-VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP--NVTVG 515 (541)
Q Consensus 441 ~~~~--g~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~--~v~~G 515 (541)
++.+ ++.+.+.||+||+++...... ......+++|.|++|++++|+| ++|+.+ .|+.|||+|+|+ +++.|
T Consensus 404 ~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~----~g~~GeL~v~gp~p~~~~g 478 (655)
T PRK03584 404 YEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV----VGEVGELVCTKPFPSMPLG 478 (655)
T ss_pred HHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC----CCCceEEEEccCCCCCcce
Confidence 9988 478999999999865433222 2234568999999999999999 677653 578999999996 79999
Q ss_pred cCCCchhhH
Q 009160 516 YFKNEEKTK 524 (541)
Q Consensus 516 Y~~~~~~t~ 524 (541)
||++++.++
T Consensus 479 y~~~~~~~~ 487 (655)
T PRK03584 479 FWNDPDGSR 487 (655)
T ss_pred eeCCCccch
Confidence 999998654
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=492.30 Aligned_cols=373 Identities=21% Similarity=0.228 Sum_probs=303.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...+++++|+++++++|+++|+.+ +++ .+||+||+++++++|++|.+.|+++|++|
T Consensus 2000 ~~~~~~~~~~~~~a~~~p~~~A~~~------------~~~-----------~lTy~eL~~~a~~lA~~L~~~gv~~g~~V 2056 (5163)
T PRK12316 2000 PRGPGVHQRIAEQAARAPEAIAVVF------------GDQ-----------HLSYAELDSRANRLAHRLRARGVGPEVRV 2056 (5163)
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEc------------CCC-----------eEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 4446899999999999999999986 333 69999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+|+++|+++++++++||+++|+++||++|.++.+++.++++++++++++++.+....+.. ..... .+.++..
T Consensus 2057 ~l~~~~s~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~-~~~~~~~--- 2128 (5163)
T PRK12316 2057 AIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPL----PAGVA-RLPLDRD--- 2128 (5163)
T ss_pred EEEeCCCHHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhccc----ccccc-eEeccch---
Confidence 999999999999999999999999999999999999999999999999998765433211 01111 1111110
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
..+... ....+.....+++++||+|||||||.||||+++|+++++.+.+....+ .++++|+
T Consensus 2129 ----------------~~~~~~--~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~ 2189 (5163)
T PRK12316 2129 ----------------AEWADY--PDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-ELSPADC 2189 (5163)
T ss_pred ----------------hhhhcc--CccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-CCCCcce
Confidence 001100 111122345789999999999999999999999999999999888888 8999999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeC-----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
++.++|++|+.++..++.+|+.|+++++. ++..+.+. ++++++|+++++|+++..+.+......
T Consensus 2190 ~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~~ 2258 (5163)
T PRK12316 2190 ELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDE-----------MERHGVTILDFPPVYLQQLAEHAERDG 2258 (5163)
T ss_pred EEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHH-----------HHHcCCeEEEcChHHHHHHHhhhhccc
Confidence 99999999999998899999999999773 34445555 999999999999999998876421100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcc
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v 448 (541)
...+||.+++||+++++++.+.|.+.+ +..+
T Consensus 2259 ------------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l 2290 (5163)
T PRK12316 2259 ------------------------------------------------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYL 2290 (5163)
T ss_pred ------------------------------------------------CCcceeEEEEecccCCHHHHHHHHHhCCCcEE
Confidence 012799999999999999999998766 6789
Q ss_pred eeccCcccccccccccCCCCC-----CCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 449 GQGYGLTETCAGGTFSEVDDS-----SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~~~-----~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
+|.||+||++..++....... ...++|+|++|++++|+| ++++. ++.|.+|||||+|+++++||||+|+.|
T Consensus 2291 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~---vp~g~~GEl~i~G~~v~~GY~~~p~~T 2366 (5163)
T PRK12316 2291 FNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNL---LAPGMAGELYLGGEGLARGYLNRPGLT 2366 (5163)
T ss_pred EECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEEC-CCCCC---CCCCCeeEEEecchhhcccccCChhhh
Confidence 999999999887665433221 125899999999999999 66654 458899999999999999999999999
Q ss_pred HhhhccC-----CCceEEcccc
Q 009160 524 KEVYKVM-----LDRFMLMVAL 540 (541)
Q Consensus 524 ~~~f~~d-----~dGw~~~~~~ 540 (541)
+++|..| .++||+|+|+
T Consensus 2367 ~~~f~~~~~~~~~~~~yrTGDl 2388 (5163)
T PRK12316 2367 AERFVPDPFSASGERLYRTGDL 2388 (5163)
T ss_pred hhhccCCCCCCCCCeeEecccE
Confidence 9999322 3468888875
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=401.83 Aligned_cols=373 Identities=23% Similarity=0.290 Sum_probs=298.2
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
|.++.++|.++++++|+++|+.+ +++ .+||.||.++++++|.+|.+.|++++++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i 57 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVY------------RDQ-----------EISYAEFHQRILQAAGMLHARGIGQGDVVAL 57 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEE------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46789999999999999999976 444 7999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+...... . ....+.++.....
T Consensus 58 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~------~~~~~~~~~~~~~-- 128 (497)
T PRK06145 58 LMKNSAAFLELAFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L------ETPKIVIDAAAQA-- 128 (497)
T ss_pred ECCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c------ccceEEecCcccc--
Confidence 999999999999999999999999999999999999999999999999876543221 0 1122222221100
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
.+..+.... ..........++++++++|||||||.||||+++|+++...+......+ .+..+|+++
T Consensus 129 ------------~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~ 194 (497)
T PRK06145 129 ------------DSRRLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERLL 194 (497)
T ss_pred ------------hhHHHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEEE
Confidence 011111111 111112345678999999999999999999999999987766655666 788999999
Q ss_pred EccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhcc
Q 009160 297 AYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK 372 (541)
Q Consensus 297 ~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 372 (541)
..+|++|.+++.. .+.++..|+++++ +++..+++. ++++++|+++++|+++..++.......
T Consensus 195 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ll~~~~~~~--- 260 (497)
T PRK06145 195 VVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAA-----------IERHRLTCAWMAPVMLSRVLTVPDRDR--- 260 (497)
T ss_pred EecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHcCCCccc---
Confidence 9999999998876 4667899999988 555666666 999999999999999988875321100
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcceec
Q 009160 373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG 451 (541)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~ 451 (541)
...+++|.+++||++++.++.+.+++.+ ++++++.
T Consensus 261 --------------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~ 296 (497)
T PRK06145 261 --------------------------------------------FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDA 296 (497)
T ss_pred --------------------------------------------cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEe
Confidence 0013799999999999999999999888 6889999
Q ss_pred cCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc
Q 009160 452 YGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (541)
Q Consensus 452 YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~ 529 (541)
||+||+++.++..... ....+++|+|+++++++|+| +++..+ +.|+.|||+++|++++.||+++++.|++.|
T Consensus 297 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~---~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-- 370 (497)
T PRK06145 297 YGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWL---PPNMKGEICMRGPKVTKGYWKDPEKTAEAF-- 370 (497)
T ss_pred ecCcccCCcceeccCccccccCCCcccCCCCceEEEEC-CCCCCC---CCCCceEEEEECcchhhhhcCChHHHHHHH--
Confidence 9999998866543322 23457899999999999999 666654 467899999999999999999999999988
Q ss_pred CCCceEEcccc
Q 009160 530 MLDRFMLMVAL 540 (541)
Q Consensus 530 d~dGw~~~~~~ 540 (541)
.+|||+|+|+
T Consensus 371 -~~~~~~TGDl 380 (497)
T PRK06145 371 -YGDWFRSGDV 380 (497)
T ss_pred -hCCCeeccce
Confidence 4677777764
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=404.99 Aligned_cols=396 Identities=23% Similarity=0.302 Sum_probs=303.0
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|.+.++++|+++|+.+ ++. .+||.||.++++++|..|.+.|+++|++|++
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i 78 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFIC------------MGK-----------AITYGELDELSRALAAWLQSRGLAKGARVAI 78 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE------------cCc-----------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46899999999999999999986 333 6999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++++++++||+++|++++|+++..+.+++.++++.++++++|+++...+.+.+..... ..+.++..........
T Consensus 79 ~~~n~~~~~~~~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 157 (557)
T PRK07059 79 MMPNVLQYPVAIAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKT-AVKHVVVASMGDLLGF 157 (557)
T ss_pred ECCCCHHHHHHHHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhccc-CCceeEEecccccccc
Confidence 999999999999999999999999999999999999999999999999887665555543332 2333333221100000
Q ss_pred -----c--------cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHH
Q 009160 217 -----S--------SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283 (541)
Q Consensus 217 -----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~ 283 (541)
. ............++++...............++++++|+|||||||.||||+++|.+++..+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~ 237 (557)
T PRK07059 158 KGHIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQME 237 (557)
T ss_pred cccccccccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHh
Confidence 0 000000012234555554433333334456789999999999999999999999999987655433
Q ss_pred hhCC---CC---CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-C---CcccccccchhhhcCcccccccccceEEe
Q 009160 284 TIVP---DL---GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-G---TPLTLTDTSSKIKKGTQGDASVLRPTVMA 352 (541)
Q Consensus 284 ~~~~---~~---~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~ 352 (541)
..+. .. ...+.+++.+|++|.+++.. .+.++..|++.++ . ++..+++. ++++++|.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~ 306 (557)
T PRK07059 238 AWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKE-----------LKKYQVHIFP 306 (557)
T ss_pred hhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHH-----------HHHhCCeeee
Confidence 2220 11 13457888999999988765 5567778887666 3 33344444 8999999999
Q ss_pred ecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCC
Q 009160 353 SVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPL 432 (541)
Q Consensus 353 ~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l 432 (541)
++|.++..+.+..... .....++|.++.||+++
T Consensus 307 ~~p~~~~~l~~~~~~~-----------------------------------------------~~~~~~l~~~~~gg~~~ 339 (557)
T PRK07059 307 AVNTLYNALLNNPDFD-----------------------------------------------KLDFSKLIVANGGGMAV 339 (557)
T ss_pred cCHHHHHHHHcCcCcC-----------------------------------------------cCCchhheEEEeccccC
Confidence 9999999887631100 00012789999999999
Q ss_pred CHHHHHHHHHHhCCcceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCC
Q 009160 433 SADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511 (541)
Q Consensus 433 ~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~ 511 (541)
++.+.+.|++.+|+++++.||+||++.+++...... ...+++|.|+++++++|+| ++++.+ +.|+.|||+|+|+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~---~~g~~Gel~v~g~~ 415 (557)
T PRK07059 340 QRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDL---PLGEPGEICIRGPQ 415 (557)
T ss_pred CHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCC---CCCCceEEEEeCCc
Confidence 999999999999999999999999988765544322 3457999999999999999 667654 47889999999999
Q ss_pred cccccCCCchhhHhhhccCCCceEEcccc
Q 009160 512 VTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 512 v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++.|||++++.|++.| +.+|||+|+|+
T Consensus 416 ~~~gY~~~~~~~~~~~--~~~g~~~TGDl 442 (557)
T PRK07059 416 VMAGYWNRPDETAKVM--TADGFFRTGDV 442 (557)
T ss_pred cchhhhcCHHHHhhhc--ccCCceecCcE
Confidence 9999999999999988 78899998874
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-47 Score=404.87 Aligned_cols=394 Identities=18% Similarity=0.222 Sum_probs=305.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
..+.|+.++|+++++++|+++++.... +| ..+.+||.||.++++++|++|.+.|+++||+|
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~---------~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v 67 (542)
T PRK06018 7 DWPLLCHRIIDHAARIHGNREVVTRSV----------EG---------PIVRTTYAQIHDRALKVSQALDRDGIKLGDRV 67 (542)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeec----------cC---------CceEEEHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 445799999999999999999997421 22 23579999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++|+++++++++||+++|++++|+++.++.+++.++++.+++++++++.+..+.+.+.....+..+.++...+....
T Consensus 68 ~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (542)
T PRK06018 68 ATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHM 147 (542)
T ss_pred EEEcCCchHHHHHHHHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999998887777766656666666665433211
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHH-HHH-HHHHhhCCCCCCC
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL-ATV-SAVMTIVPDLGSK 292 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~-~~~-~~~~~~~~~~~~~ 292 (541)
.. . .......++++...... ........++++++|+|||||||.||||++||++.+ ... ......+ +++.+
T Consensus 148 ~~----~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~ 220 (542)
T PRK06018 148 PQ----T-TLKNAVAYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAA 220 (542)
T ss_pred cc----c-CccccccHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCCC
Confidence 10 0 01123346665443221 111233466789999999999999999999999743 322 2233345 78899
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEeC----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHh
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 368 (541)
|+++..+|++|.+++...+.++..|+++++. ++..+.+. ++++++|+++++|+++..+.+.....
T Consensus 221 d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-----------l~~~~~t~~~~~p~~~~~l~~~~~~~ 289 (542)
T PRK06018 221 DTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASVYEL-----------LDTEKVTFTAGVPTVWLMLLQYMEKE 289 (542)
T ss_pred CEEEEecCHHHHhhhHHHHhhhhcCceEEccCcCCCHHHHHHH-----------HHhcCCceeecCcHHHHHHHhccccc
Confidence 9999999999999988777889999999873 34445555 89999999999999999887643211
Q ss_pred hhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcc
Q 009160 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPI 448 (541)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v 448 (541)
.. ..+++|.+++||+++++++.++|++ +++++
T Consensus 290 ~~-----------------------------------------------~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~ 321 (542)
T PRK06018 290 GL-----------------------------------------------KLPHLKMVVCGGSAMPRSMIKAFED-MGVEV 321 (542)
T ss_pred CC-----------------------------------------------CcccceEEEEcCCCCCHHHHHHHHH-hCCCe
Confidence 00 0138999999999999999999999 89999
Q ss_pred eeccCcccccccccccCCCC-----------CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccC
Q 009160 449 GQGYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~ 517 (541)
++.||+||++.+++.....+ ....++|+|.++++++|+| ++++.++ .+.+..|||+++|++++.|||
T Consensus 322 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~-~~~~~~Gel~i~g~~~~~gy~ 399 (542)
T PRK06018 322 RHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELP-WDGKTFGRLKVRGPAVAAAYY 399 (542)
T ss_pred EeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCC-CCCCceeEEEEecCCcchhhh
Confidence 99999999987655432111 1236799999999999999 6776654 223367999999999999999
Q ss_pred CCchhhHhhhccCCCceEEcccc
Q 009160 518 KNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 518 ~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++ +.+.+ +.+|||.|+|+
T Consensus 400 ~~---~~~~~--~~~~~~~TGDl 417 (542)
T PRK06018 400 RV---DGEIL--DDDGFFDTGDV 417 (542)
T ss_pred cC---cccEe--cCCcEEEcCCE
Confidence 83 33444 67888888763
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-48 Score=490.60 Aligned_cols=374 Identities=21% Similarity=0.237 Sum_probs=305.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
++...+++++|+++++++|+++|+.+ +++ .+||+||.++++++|++|.++|+++|++
T Consensus 4547 ~~~~~~~~~l~~~~a~~~p~~~Av~~------------~~~-----------~lTY~eL~~~~~~lA~~L~~~gv~~g~~ 4603 (5163)
T PRK12316 4547 YPATRCVHQLVAERARMTPDAVAVVF------------DEE-----------KLTYAELNRRANRLAHALIARGVGPEVL 4603 (5163)
T ss_pred CCccccHHHHHHHHHHhCCCCeEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34557899999999999999999986 333 6999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
|+|+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++....+.+.. .... .++.++..
T Consensus 4604 V~i~~~~s~~~iv~~lavl~aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~-~~~~~~~~-- 4676 (5163)
T PRK12316 4604 VGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPI----PDGL-ASLALDRD-- 4676 (5163)
T ss_pred EEEEeCCCHHHHHHHHHHHHhCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhccc----ccCc-ceEeecch--
Confidence 9999999999999999999999999999999999999999999999999998765443211 1111 11221110
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCc
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKD 293 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d 293 (541)
.++ .......+.....+++++||+|||||||.||||+++|+++++.+.+....+ +++++|
T Consensus 4677 -----------------~~~--~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d 4736 (5163)
T PRK12316 4677 -----------------EDW--EGFPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERY-ELTPDD 4736 (5163)
T ss_pred -----------------hhc--ccCCccCCccCCCCCceEEEEECCCCCCCCCEeeeccHHHHHHHHHHHHhc-CCCcCC
Confidence 000 000111122345789999999999999999999999999999999888888 899999
Q ss_pred EEEEccChHHHHHHHHHHHHhhcCceEEeC-----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHh
Q 009160 294 VYLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368 (541)
Q Consensus 294 ~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 368 (541)
++++++|++|+.+++.++.+|+.|+++++. ++..+.+. ++++++|+++++|++++.+.+.....
T Consensus 4737 ~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~l~~~-----------i~~~~vt~~~~~Ps~~~~l~~~~~~~ 4805 (5163)
T PRK12316 4737 RVLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLWDPERLYAE-----------IHEHRVTVLVFPPVYLQQLAEHAERD 4805 (5163)
T ss_pred eEEEecCcchhhHHHHHHHHHhCCCEEEEcCcccCCHHHHHHH-----------HHHcCCEEEEcCHHHHHHHHhhhccc
Confidence 999999999999999899999999999993 34445555 99999999999999999887643211
Q ss_pred hhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCc
Q 009160 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAP 447 (541)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~ 447 (541)
. ..++||.+++|||++++++.+.+.+.+ +++
T Consensus 4806 ~------------------------------------------------~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 4837 (5163)
T PRK12316 4806 G------------------------------------------------EPPSLRVYCFGGEAVAQASYDLAWRALKPVY 4837 (5163)
T ss_pred c------------------------------------------------CCCCccEEEEecccCCHHHHHHHHHhCCCCE
Confidence 0 113899999999999999997776655 789
Q ss_pred ceeccCcccccccccccCCCC-----CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchh
Q 009160 448 IGQGYGLTETCAGGTFSEVDD-----SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522 (541)
Q Consensus 448 v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~ 522 (541)
++|+||+||+++.++...... ....++|+|++|++++|+| ++++.+ +.|++|||+|+|+++++|||++|+.
T Consensus 4838 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~---p~g~~GEl~i~G~~v~~GY~~~~~~ 4913 (5163)
T PRK12316 4838 LFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLD-GQLNPL---PVGVAGELYLGGEGVARGYLERPAL 4913 (5163)
T ss_pred EEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEEC-CCCCcC---CCCCCceEEECCcccchhhcCChhh
Confidence 999999999998776554332 3457899999999999999 666654 5889999999999999999999999
Q ss_pred hHhhhccC-----CCceEEcccc
Q 009160 523 TKEVYKVM-----LDRFMLMVAL 540 (541)
Q Consensus 523 t~~~f~~d-----~dGw~~~~~~ 540 (541)
|+++|..+ .++||+|+|+
T Consensus 4914 t~~~f~~~p~~~~~~~~yrTGDl 4936 (5163)
T PRK12316 4914 TAERFVPDPFGAPGGRLYRTGDL 4936 (5163)
T ss_pred hhhhccCCCCCCCCcceeecCce
Confidence 99999222 2368888885
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=410.06 Aligned_cols=380 Identities=17% Similarity=0.178 Sum_probs=281.9
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.+.+.+ +.++++|+++.. . .+..+.+||+||.++++++|++|+++|+++||+|+++
T Consensus 87 ~n~~~~~~~---~~~~~~a~~~~~------------~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~ 145 (652)
T TIGR01217 87 LNYAENLLR---AAGTEPALLYVD------------E------THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGY 145 (652)
T ss_pred eeHHHHHhc---cCCCCeEEEEEC------------C------CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 445554443 357899998731 1 1234679999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc---------hhHHHHhhcCCCCccEEEEe
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE---------LKKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~ii~~ 208 (541)
++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.++...++.++.+|.+
T Consensus 146 ~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~ 225 (652)
T TIGR01217 146 LPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHI 225 (652)
T ss_pred cCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEE
Confidence 999999999999999999999999999999999999999999999998753 34455555566667777776
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHH-HHHHHhhCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT-VSAVMTIVP 287 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~ 287 (541)
+.......... ......+|+++...............++++++|+|||||||.||||+++|++++.. .......+
T Consensus 226 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~- 301 (652)
T TIGR01217 226 PYLGPRETEAP---KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC- 301 (652)
T ss_pred eCCCCcccccc---cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-
Confidence 53221100000 00112457776543222222233456789999999999999999999999997643 33444445
Q ss_pred CCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 360 (541)
+++++|++++++|+.|+... .++.+|+.|+++++. ++..+++. ++++++|++..+|.++..
T Consensus 302 ~~~~~d~~~~~~~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~ 369 (652)
T TIGR01217 302 DLGPGDRLFYYTTTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDI-----------AERTGATLFGTSAKYVMA 369 (652)
T ss_pred CCCCCcEEEEeCCcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHH-----------HHHhCCeEEecCHHHHHH
Confidence 78899999999999998643 345789999999883 23344455 999999999888887766
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHH
Q 009160 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440 (541)
Q Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~ 440 (541)
+.+...... +....++||.+++||+++++++.+++
T Consensus 370 l~~~~~~~~---------------------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~ 404 (652)
T TIGR01217 370 CRKAGVHPA---------------------------------------------RTHDLSALQCVASTGSPLPPDGFRWV 404 (652)
T ss_pred HHhcCCCcc---------------------------------------------ccCChhheeEEEeecCCCCHHHHHHH
Confidence 543100000 00011389999999999999999999
Q ss_pred HHHhC--CcceeccCccccccccccc-CCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC--Ccccc
Q 009160 441 NICLG--APIGQGYGLTETCAGGTFS-EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP--NVTVG 515 (541)
Q Consensus 441 ~~~~g--~~v~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~--~v~~G 515 (541)
++.++ ..+.+.||+||+++..... .......+++|.|.+|++++|+| ++|+.+ +|+.|||+|+|| +++.|
T Consensus 405 ~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~----~g~~GEl~v~gp~p~~~~g 479 (652)
T TIGR01217 405 YDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV----TGEVGELVCTNPMPSMPIR 479 (652)
T ss_pred HHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC----CCCccEEEEecCCCccccc
Confidence 98885 4567899999975433322 22233458899999999999999 777754 478999999996 68999
Q ss_pred cCCCchhhH
Q 009160 516 YFKNEEKTK 524 (541)
Q Consensus 516 Y~~~~~~t~ 524 (541)
||++++.|+
T Consensus 480 y~~~~~~t~ 488 (652)
T TIGR01217 480 FWNDPDGSK 488 (652)
T ss_pred eeCCCccch
Confidence 999998664
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=397.34 Aligned_cols=357 Identities=20% Similarity=0.285 Sum_probs=281.1
Q ss_pred HHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH
Q 009160 65 EQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW 144 (541)
Q Consensus 65 ~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~ 144 (541)
+.+++.+|+++|+.+.. +++ .+||.|+.++++++|+.|.+.|+.+|++|+++++|+++|
T Consensus 2 ~~~a~~~p~~~a~~~~~----------~~~-----------~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~ 60 (488)
T PRK09088 2 AFHARLQPQRLAAVDLA----------LGR-----------RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWL 60 (488)
T ss_pred chhhhhCCCceEEEecC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 45678899999987521 333 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccccccccCC
Q 009160 145 FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224 (541)
Q Consensus 145 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 224 (541)
+++++||+++|++++|+++.++++++.+++++++++++|+++..... ..
T Consensus 61 ~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~------------------------- 109 (488)
T PRK09088 61 VALHFACARVGAIYVPLNWRLSASELDALLQDAEPRLLLGDDAVAAG------RT------------------------- 109 (488)
T ss_pred HHHHHHHHHcCeEEEeeCccCCHHHHHHHHHhCCCCEEEEcchhhcc------cc-------------------------
Confidence 99999999999999999999999999999999999999998653220 00
Q ss_pred eEEeeHHHHHhcccCC-CCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHH
Q 009160 225 WKITSFADVQILGREN-PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303 (541)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h 303 (541)
...+++++....... ........++++++++|||||||.||+|.++|+++...+....... .+..+|++++.+|++|
T Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~ 187 (488)
T PRK09088 110 -DVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-RVDAHSSFLCDAPMFH 187 (488)
T ss_pred -cccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEecchHH
Confidence 001122221111111 1112234568899999999999999999999999988777766665 6788999999999999
Q ss_pred HHHHHH-HHHHhhcCceEEeC---CcccccccchhhhcCcccccc--cccceEEeecHHHHHHHHHHHHHhhhccCchhH
Q 009160 304 VLELVA-ENLIAGVGSAIGYG---TPLTLTDTSSKIKKGTQGDAS--VLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK 377 (541)
Q Consensus 304 ~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 377 (541)
++++.. ++.++..|+++++. ++..++.. +. ++++|+++++|+++..+.+......
T Consensus 188 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~t~~~~~P~~~~~l~~~~~~~~-------- 248 (488)
T PRK09088 188 IIGLITSVRPVLAVGGSILVSNGFEPKRTLGR-----------LGDPALGITHYFCVPQMAQAFRAQPGFDA-------- 248 (488)
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHhhccCCcEEeeHHHHHHHHHhCcCcCc--------
Confidence 999887 55678899999873 33333333 43 5889999999999988765311000
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccc
Q 009160 378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET 457 (541)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~ 457 (541)
...+++|.+++||++++.+..+.+... |+++++.||+||+
T Consensus 249 ---------------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~ 288 (488)
T PRK09088 249 ---------------------------------------AALRHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEA 288 (488)
T ss_pred ---------------------------------------cccccceEEEecCCCCCHHHHHHHHHh-CCceeeeeccccc
Confidence 001389999999999999988877765 8999999999999
Q ss_pred cccccccCC---CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCce
Q 009160 458 CAGGTFSEV---DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRF 534 (541)
Q Consensus 458 ~~~~~~~~~---~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw 534 (541)
+++...... ...+.+++|.|+++++++|+| +++..+ +.|..|||+|+|++++.||+++++.|++.| +.|||
T Consensus 289 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~--~~~g~ 362 (488)
T PRK09088 289 GTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDC---PAGVPGELLLRGPNLSPGYWRRPQATARAF--TGDGW 362 (488)
T ss_pred ccccccCCCcccccccCCccccCCCCcEEEEEC-CCCCCC---cCCCceEEEEECCccchhhcCChhhhhhhh--cCCCC
Confidence 875432211 123568899999999999999 666554 477899999999999999999999999988 78899
Q ss_pred EEcccc
Q 009160 535 MLMVAL 540 (541)
Q Consensus 535 ~~~~~~ 540 (541)
|+|+|+
T Consensus 363 ~~TGDl 368 (488)
T PRK09088 363 FRTGDI 368 (488)
T ss_pred eeecce
Confidence 998874
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=479.71 Aligned_cols=369 Identities=22% Similarity=0.282 Sum_probs=302.6
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..+++++|+++++++|+++|+.+ +++ .+||+||.++++++|+.|.+.|+++|++|+|
T Consensus 1130 ~~~l~~~~~~~a~~~p~~~Al~~------------~~~-----------~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i 1186 (4334)
T PRK05691 1130 QAWLPELLNEQARQTPERIALVW------------DGG-----------SLDYAELHAQANRLAHYLRDKGVGPDVCVAI 1186 (4334)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEE------------CCc-----------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 45799999999999999999986 333 6999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+... ... .++.++...
T Consensus 1187 ~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~----~~~-~~~~~~~~~---- 1257 (4334)
T PRK05691 1187 AAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA----EGV-SAIALDSLH---- 1257 (4334)
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc----cCc-eEEeecccc----
Confidence 99999999999999999999999999999999999999999999999997654332211 111 112221110
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
........+.....+++++||+|||||||.||||+++|+++.+.+.+....+ .++++|+++
T Consensus 1258 ------------------~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l 1318 (4334)
T PRK05691 1258 ------------------LDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-ALDDSDVLM 1318 (4334)
T ss_pred ------------------ccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-CCCCCCEEE
Confidence 0000011112334678999999999999999999999999999999888888 899999999
Q ss_pred EccChHHHHHHHHHHHHhhcCceEEeCC------cccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 297 AYLPLAHVLELVAENLIAGVGSAIGYGT------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~v~~~~------~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+.+|++|+.+++.++.+|+.|+++++.+ +..+.+. ++++++|++.++|++++.+.+.....
T Consensus 1319 ~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~-----------i~~~~vt~~~~~Ps~l~~l~~~~~~~-- 1385 (4334)
T PRK05691 1319 QKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRIAEL-----------VQQYGVTTLHFVPPLLQLFIDEPLAA-- 1385 (4334)
T ss_pred EeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHH-----------HHHcCCeEEECcHHHHHHHHhCcccc--
Confidence 9999999999999999999999999943 3345555 99999999999999999886531100
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcce
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIG 449 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~ 449 (541)
..++||.+++||+++++++.+.+.+.+ +++++
T Consensus 1386 -----------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~ 1418 (4334)
T PRK05691 1386 -----------------------------------------------ACTSLRRLFSGGEALPAELRNRVLQRLPQVQLH 1418 (4334)
T ss_pred -----------------------------------------------cCCcccEEEEeecCCCHHHHHHHHHhCCCcEEE
Confidence 013899999999999999999998877 78999
Q ss_pred eccCcccccccccccCC--CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhh
Q 009160 450 QGYGLTETCAGGTFSEV--DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f 527 (541)
|.||+||++..++.... .+...+++|+|++|++++|+| ++++.+ +.|..|||+|+|+++++||+|+|+.|+++|
T Consensus 1419 n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~v---p~G~~GEL~i~G~~v~~GYl~~p~~t~~~f 1494 (4334)
T PRK05691 1419 NRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLD-AELNLL---PPGVAGELCIGGAGLARGYLGRPALTAERF 1494 (4334)
T ss_pred eCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEEC-CCCCCC---CCCCceEEEecCcccchhhcCCccccHhhC
Confidence 99999999877664332 234457899999999999999 666654 488999999999999999999999999998
Q ss_pred ccC-----CCceEEcccc
Q 009160 528 KVM-----LDRFMLMVAL 540 (541)
Q Consensus 528 ~~d-----~dGw~~~~~~ 540 (541)
..+ ..+||+|+|+
T Consensus 1495 ~~~p~~~~~~r~yrTGDl 1512 (4334)
T PRK05691 1495 VPDPLGEDGARLYRTGDR 1512 (4334)
T ss_pred CCCCCCCCCceEEEccce
Confidence 321 2358888874
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=401.40 Aligned_cols=396 Identities=18% Similarity=0.183 Sum_probs=296.5
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.+++++|.+.++.+|+++|+.+ ++. .+||.||.++++++|.+|.+.|+++||+|+++
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~ 76 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVH------------GSV-----------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVI 76 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 4689999999999999999975 333 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCC-------CccEEEEecC
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLD-------TVKHVICMDA 210 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~ii~~~~ 210 (541)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++..+...+....+. ....++.+++
T Consensus 77 ~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (567)
T PLN02479 77 APNIPAMYEAHFGVPMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGD 156 (567)
T ss_pred CCCcHHHHHHHHHHHhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecC
Confidence 999999999999999999999999999999999999999999999999887655444322111 1123444432
Q ss_pred CCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
...... ............++++................++.++++|||||||.||||++||+++..........+ .+.
T Consensus 157 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~ 234 (567)
T PLN02479 157 PTCDPK-SLQYALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GMN 234 (567)
T ss_pred CcCCcc-ccccccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CCC
Confidence 211000 000000112345666654322111111223345678899999999999999999999877666555566 788
Q ss_pred CCcEEEEccChHHHHHHHHHHH-HhhcCceEEe--CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVAENL-IAGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~~~~-~l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
.+|++++.+|++|..++...+. .+..|.++++ +++..+.+. ++++++|+++++|+++..+.+....
T Consensus 235 ~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~~ 303 (567)
T PLN02479 235 EGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTAKAIYSA-----------IANYGVTHFCAAPVVLNTIVNAPKS 303 (567)
T ss_pred CCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhhhhh
Confidence 8999999999999998766543 4666666666 666677776 9999999999999999988764211
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCc
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAP 447 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~ 447 (541)
... ...+++|.++++|+++++++.+++++. +++
T Consensus 304 ~~~----------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~ 336 (567)
T PLN02479 304 ETI----------------------------------------------LPLPRVVHVMTAGAAPPPSVLFAMSEK-GFR 336 (567)
T ss_pred ccc----------------------------------------------ccccceeEEEEcCCCCCHHHHHHHHhc-CCc
Confidence 000 001388999999999999999998876 899
Q ss_pred ceeccCcccccccccccCCC----------CCC-CCCcCCCcCCeE-EEEEecCCCCccCCCCCCCccEEEEccCCcccc
Q 009160 448 IGQGYGLTETCAGGTFSEVD----------DSS-VGRVGAPLPCSF-IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG 515 (541)
Q Consensus 448 v~~~YG~TE~~~~~~~~~~~----------~~~-~~~vG~p~~~~e-v~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~G 515 (541)
+++.||+||+++.++..... ... ..+.|.|.++.+ ++|+|+++++..+ .+.+++|||+|+|++++.|
T Consensus 337 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~-~~g~~~GEl~v~g~~~~~G 415 (567)
T PLN02479 337 VTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVP-ADGKTMGEIVMRGNMVMKG 415 (567)
T ss_pred eecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccC-CCCCCceEEEEeccchhhh
Confidence 99999999986544322100 011 146788888876 8999855666543 1123679999999999999
Q ss_pred cCCCchhhHhhhccCCCceEEcccc
Q 009160 516 YFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 516 Y~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
||++|+.|++.| .+|||+|+|+
T Consensus 416 Y~~~~~~t~~~~---~~g~~~TGDl 437 (567)
T PLN02479 416 YLKNPKANEEAF---ANGWFHSGDL 437 (567)
T ss_pred hhcCcccccchh---cCCceeccee
Confidence 999999999998 5788888774
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=404.60 Aligned_cols=364 Identities=21% Similarity=0.296 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeC
Q 009160 60 LAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFAD 139 (541)
Q Consensus 60 l~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 139 (541)
+.+.|+++++++|+++|+.+. ++ +.++.+||+||.++++++|+.|.++ ++|++|+|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~-----------~~--------~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~ 62 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDR-----------ES--------GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGE 62 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCC-----------CC--------CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcC
Confidence 889999999999999999762 22 2346899999999999999999988 79999999999
Q ss_pred CcHHHHHHHHHHHhCCcEEEeccC-------CCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCC
Q 009160 140 TRAEWFVALQGCFRRNVTVVTIYA-------SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (541)
Q Consensus 140 ns~e~~~~~lA~~~~G~~~v~l~~-------~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 212 (541)
|+++++++++||+++|+++++++. ....+++.+++++++++++|++....+.+...... +.+.+
T Consensus 63 ~~~e~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~-------~~~~~-- 133 (525)
T PRK05851 63 PTVELVAAIQGAWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSS-------VTVHD-- 133 (525)
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcc-------ccccc--
Confidence 999999999999999998653321 12235667789999999999987765544332111 11100
Q ss_pred ccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC-C
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG-S 291 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~-~ 291 (541)
+..... .....+.....++++++|+|||||||.||||+++|+++++.+......+ +++ +
T Consensus 134 -----------------~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~ 193 (525)
T PRK05851 134 -----------------LATAAH--TNRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GLDAA 193 (525)
T ss_pred -----------------cccccc--ccccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCC
Confidence 000000 0000011234678999999999999999999999999999988888777 777 8
Q ss_pred CcEEEEccChHHHHHHHHHHHHhhcCceEEeCC-------cccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT-------PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~-------~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
+|++++.+|++|++++...+.+++.|+++++.. |..+++. ++++++|++..+|.++..+.+.
T Consensus 194 ~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~p~~~~~~l~~~ 262 (525)
T PRK05851 194 TDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSW-----------LSDSRATLTAAPNFAYNLIGKY 262 (525)
T ss_pred CCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHH-----------HHHhCCeEEeCCcHHHHHHHHh
Confidence 999999999999999988888999999998843 3344444 8999999876555544443321
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH-
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC- 443 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~- 443 (541)
.. ... ....+++|.+++||+++++++.+.|.+.
T Consensus 263 ~~-~~~---------------------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~ 296 (525)
T PRK05851 263 AR-RVS---------------------------------------------DVDLGALRVALNGGEPVDCDGFERFATAM 296 (525)
T ss_pred hc-ccc---------------------------------------------CCCHHHhheeEeccccCCHHHHHHHHHHH
Confidence 10 000 0001389999999999999999888764
Q ss_pred --hCC---cceeccCcccccccccccCCC---------------CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCcc
Q 009160 444 --LGA---PIGQGYGLTETCAGGTFSEVD---------------DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRG 503 (541)
Q Consensus 444 --~g~---~v~~~YG~TE~~~~~~~~~~~---------------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~G 503 (541)
+|. .++|.||+||++..++...+. ..+.+++|+|++|++++|+| ++++. +++.|+.|
T Consensus 297 ~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~--~~~~g~~G 373 (525)
T PRK05851 297 APFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGAA--GVAGREIG 373 (525)
T ss_pred hhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCCc--cCCCCCeE
Confidence 454 499999999997765543221 12346899999999999999 44432 13478899
Q ss_pred EEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 504 EIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 504 Ei~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
||+|+|++++.|||++++.+ .+|||+|+|+
T Consensus 374 El~v~g~~~~~GY~~~~~~~-------~~~~~~TGDl 403 (525)
T PRK05851 374 EIEIRGASMMSGYLGQAPID-------PDDWFPTGDL 403 (525)
T ss_pred EEEEecCchhhccccCCccC-------CCCceeccce
Confidence 99999999999999998643 4566666653
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=400.60 Aligned_cols=396 Identities=24% Similarity=0.327 Sum_probs=303.4
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVA 135 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~ 135 (541)
..++.++|.++++++|+++|+++ +|+ .+||.||.++++++|..|. +.|+++|++|+
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~ 80 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHS------------FGK-----------TITYREADQLVEQFAAYLLGELQLKKGDRVA 80 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 46899999999999999999986 444 6999999999999999997 57999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc--
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP-- 213 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-- 213 (541)
++++|+++++++++||+++|++++|++|.++.+++.+++++++++++++++.....+.+.....+ ...++..+....
T Consensus 81 i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 159 (560)
T PRK08751 81 LMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTP-VKQVITTGLGDMLG 159 (560)
T ss_pred EECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCC-ccEEEEechhhhcc
Confidence 99999999999999999999999999999999999999999999999999877666655444333 233333221000
Q ss_pred -c-----------ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH
Q 009160 214 -S-----------AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281 (541)
Q Consensus 214 -~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~ 281 (541)
. ...............+++..........+.....++++++++|||||||.||||.++|++++..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~ 239 (560)
T PRK08751 160 FPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQ 239 (560)
T ss_pred cccchhhhhhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHH
Confidence 0 0000000000112335555444333333334567789999999999999999999999999887776
Q ss_pred HHhhCC---CCCC-CcEEEEccChHHHHHHHH-HHHHhhcCceEEe-C---CcccccccchhhhcCcccccccccceEEe
Q 009160 282 VMTIVP---DLGS-KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-G---TPLTLTDTSSKIKKGTQGDASVLRPTVMA 352 (541)
Q Consensus 282 ~~~~~~---~~~~-~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~ 352 (541)
....+. .+.. .+++++.+|++|.+++.. .+.++..|+++++ . ++..+++. ++++++|++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~ 308 (560)
T PRK08751 240 AHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKE-----------LKKTRFTAFT 308 (560)
T ss_pred HHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHH-----------HHhcceeEec
Confidence 554431 1333 467889999999999765 4556777777665 2 33444444 9999999999
Q ss_pred ecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCC
Q 009160 353 SVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPL 432 (541)
Q Consensus 353 ~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l 432 (541)
++|.++..+.+.... . ....+++|.+++||+++
T Consensus 309 ~~p~~~~~l~~~~~~--~---------------------------------------------~~~l~~lr~v~~gG~~~ 341 (560)
T PRK08751 309 GVNTLFNGLLNTPGF--D---------------------------------------------QIDFSSLKMTLGGGMAV 341 (560)
T ss_pred ChHHHHHHHHcCcCc--C---------------------------------------------CcchhhheeeeeCCCCC
Confidence 999999887652100 0 00012899999999999
Q ss_pred CHHHHHHHHHHhCCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCC
Q 009160 433 SADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511 (541)
Q Consensus 433 ~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~ 511 (541)
++.+.+.+++.+|+++++.||+||++..++..... ....+++|.|+++++++|+| ++++.+ +.|..|||+|+|++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~---~~g~~Gel~v~~~~ 417 (560)
T PRK08751 342 QRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVL---AIGEIGELCIKGPQ 417 (560)
T ss_pred CHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEEC-CCCCCC---CCCCceEEEEecCc
Confidence 99999999998999999999999998766544322 23457899999999999999 677654 47789999999999
Q ss_pred cccccCCCchhhHhhhccCCCceEEcccc
Q 009160 512 VTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 512 v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++.||+++++.|++.| +.||||+|+|+
T Consensus 418 ~~~gy~~~~~~~~~~~--~~~g~~~TGD~ 444 (560)
T PRK08751 418 VMKGYWKRPEETAKVM--DADGWLHTGDI 444 (560)
T ss_pred cchhhcCChhhhhhcc--ccCCCccccce
Confidence 9999999999999888 77889888874
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=397.63 Aligned_cols=368 Identities=20% Similarity=0.247 Sum_probs=284.1
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGH-KKEERVAI 136 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i 136 (541)
.|+.++|.+++ .|+++|+.+ ++. .+||.||.++++++|.+|.+.|+ .+|++|++
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~------------~~~-----------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i 57 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRY------------GDR-----------TWTWREVLAEAAARAAALIALADPDRPLHVGV 57 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 46888887754 799999976 443 69999999999999999999999 89999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|++|.++.+++.+++++++++++|++++..+.+.++. .+..+ ++.++..
T Consensus 58 ~~~n~~~~v~~~lA~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~-~i~~~~~----- 129 (540)
T PRK13388 58 LLGNTPEMLFWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD--LPGVR-VLDVDTP----- 129 (540)
T ss_pred ECCCCcHHHHHHHHHHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc--ccCce-EEEccch-----
Confidence 999999999999999999999999999999999999999999999999987665554431 22222 2332211
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
.+.++...... ..+.....++++++|+|||||||.||||+++|+++...+......+ ++..+|+++
T Consensus 130 ------------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l 195 (540)
T PRK13388 130 ------------AYAELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVCY 195 (540)
T ss_pred ------------hhhhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEEE
Confidence 12222221111 1112235679999999999999999999999999998888877777 889999999
Q ss_pred EccChHHHHHHHHH-HHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhcc
Q 009160 297 AYLPLAHVLELVAE-NLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK 372 (541)
Q Consensus 297 ~~~pl~h~~~~~~~-~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 372 (541)
+.+|++|.+++... +.++..|+++++ +++..+++. ++++++|++..+|..+..+.......
T Consensus 196 ~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~l~~l~~~~~~~---- 260 (540)
T PRK13388 196 VSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDD-----------VRRYGATYFNYVGKPLAYILATPERP---- 260 (540)
T ss_pred EeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHhCCCCc----
Confidence 99999999988764 457999999988 455566666 99999999999999988776421000
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceecc
Q 009160 373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGY 452 (541)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~Y 452 (541)
. ....++|.+ . |++++++..+.+.+.+++++++.|
T Consensus 261 ~-------------------------------------------~~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~Y 295 (540)
T PRK13388 261 D-------------------------------------------DADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGY 295 (540)
T ss_pred c-------------------------------------------ccccceEEE-E-CCCCCHHHHHHHHHHhCCceeccc
Confidence 0 000256643 3 667788888888888899999999
Q ss_pred CcccccccccccCCCCCCCCCcCCCcCCeEEE-----------EEecCCCCccCCCCCCCccEEEEc-cCCcccccCCCc
Q 009160 453 GLTETCAGGTFSEVDDSSVGRVGAPLPCSFIK-----------LIDWPEGGYLTSDSPMPRGEIVIA-GPNVTVGYFKNE 520 (541)
Q Consensus 453 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~-----------ivd~~~~~~~~~~~~g~~GEi~v~-g~~v~~GY~~~~ 520 (541)
|+||++.+++.. .....+++|+|++++++. ++| ++|+.. ..++..|||+++ |++++.||+++|
T Consensus 296 G~tE~~~~~~~~--~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~--~~~~~~GEl~v~~g~~~~~gY~~~~ 370 (540)
T PRK13388 296 GSSEGAVIVVRE--PGTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALL--NADEAIGELVNTAGAGFFEGYYNNP 370 (540)
T ss_pred ccccccceeecC--CCCCCCCCCCCCCCcEEEcCCCCccccceecc-Cccccc--cCCCcceEEEEecCCcccccccCCh
Confidence 999998766533 234568999999997653 222 222222 134568999998 999999999999
Q ss_pred hhhHhhhccCCCceEEcccc
Q 009160 521 EKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 521 ~~t~~~f~~d~dGw~~~~~~ 540 (541)
+.|++.| .+|||+|+|+
T Consensus 371 ~~t~~~~---~~g~~~TGD~ 387 (540)
T PRK13388 371 EATAERM---RHGMYWSGDL 387 (540)
T ss_pred HHHHHHh---hcCceeccce
Confidence 9999988 5688888774
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=395.81 Aligned_cols=368 Identities=21% Similarity=0.221 Sum_probs=294.4
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
++.+.|.+.++.+|+++|+.. .++ .+||+||.+++.++|..|.+.|+++|++|++++
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~ 57 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRY------------QGQ-----------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYG 57 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEc------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 478899999999999999975 343 699999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+.+|+++++||+++|++++|+++.++.+++.++++.++++.++++.+....... .. ++.++
T Consensus 58 ~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~-------~~-~~~~~--------- 120 (502)
T TIGR01734 58 HMEPHMLVAFLGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG-------TQ-IITLS--------- 120 (502)
T ss_pred CCCHHHHHHHHHHHHhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC-------Cc-eEEch---------
Confidence 99999999999999999999999999999999999999999999998765322111 00 11111
Q ss_pred ccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEc
Q 009160 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY 298 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~ 298 (541)
..+++...... ........++++++|+|||||||.||+|+++|+++...+.+....+ .+..+|++++.
T Consensus 121 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~ 188 (502)
T TIGR01734 121 ----------ALEQAETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLNQ 188 (502)
T ss_pred ----------HhhhhhhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEee
Confidence 01111111110 1111234678999999999999999999999999999988887777 78899999999
Q ss_pred cChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhcc
Q 009160 299 LPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAK 372 (541)
Q Consensus 299 ~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~ 372 (541)
+|++|.+++..++.++..|+++++. ++..+++. ++++++|.+.++|.++..++.......
T Consensus 189 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~p~~~~~~l~~~~~~~--- 254 (502)
T TIGR01734 189 APFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFEE-----------LPKTGLNVWVSTPSFVDMCLLDPNFNQ--- 254 (502)
T ss_pred cCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHHH-----------HHHcCCeEEEEChhHHHHHHhcccccc---
Confidence 9999999998888999999999883 33444555 899999999999999877654211000
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcceec
Q 009160 373 GGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQG 451 (541)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~ 451 (541)
...+++|.+++||+++++++.+.+.+.+ ++.+++.
T Consensus 255 --------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 290 (502)
T TIGR01734 255 --------------------------------------------ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNT 290 (502)
T ss_pred --------------------------------------------ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeC
Confidence 0113899999999999999999998887 7899999
Q ss_pred cCcccccccccccCC-----CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhh
Q 009160 452 YGLTETCAGGTFSEV-----DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526 (541)
Q Consensus 452 YG~TE~~~~~~~~~~-----~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~ 526 (541)
||+||+++..+.... ......++|.|.++++++|+| +++..+ +.|+.|||+|+|++++.||+++++.|.+.
T Consensus 291 yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~---~~g~~Gel~v~g~~~~~gy~~~~~~~~~~ 366 (502)
T TIGR01734 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPL---PEGEKGEIVIVGPSVSKGYLNNPEKTAEA 366 (502)
T ss_pred ccCCcceEEEEEEEccccccccCCccccccccCCCEEEEEC-CCCCCC---CCCCeeEEEEccccccccccCCcccchHh
Confidence 999998764443221 122346799999999999999 566554 47889999999999999999999999988
Q ss_pred hc-cCCCceEEcccc
Q 009160 527 YK-VMLDRFMLMVAL 540 (541)
Q Consensus 527 f~-~d~dGw~~~~~~ 540 (541)
|. .+.+|||+|+|+
T Consensus 367 ~~~~~~~~~~~TGDl 381 (502)
T TIGR01734 367 FFSHEGQPAYRTGDA 381 (502)
T ss_pred heeCCCcEEEECCCE
Confidence 72 233469999875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=393.40 Aligned_cols=368 Identities=21% Similarity=0.255 Sum_probs=289.1
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERV 134 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V 134 (541)
...++.++|.+.+. ++++|+.+ +++ .+||.||.++++++|++|.++ |++++++|
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~------------~~~-----------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V 57 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYF------------EDS-----------FTSWREHIRGSAARAAALRARLDPTRPPHV 57 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEE------------CCc-----------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEE
Confidence 34579999988774 78999876 444 799999999999999999997 89999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++++....+..+. ... .++.++.
T Consensus 58 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~~-~~~~~~~---- 129 (529)
T PRK07867 58 GVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD---PGV-RVINVDS---- 129 (529)
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc---cCc-eEEEecc----
Confidence 99999999999999999999999999999999999999999999999999987766544432 111 1222211
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
..+.++...............++++++|+|||||||.||||+++|+++...+......+ +++..|+
T Consensus 130 -------------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d~ 195 (529)
T PRK07867 130 -------------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDV 195 (529)
T ss_pred -------------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCcccE
Confidence 11333332221222223345778999999999999999999999999998888887777 7889999
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+++.+|++|.+++.. .+.++..|+++++ +++..+++. ++++++|++.++|+.+..++...... .
T Consensus 196 ~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~p~~~~~ll~~~~~~-~ 263 (529)
T PRK07867 196 CYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPD-----------VRRYGATYANYVGKPLSYVLATPERP-D 263 (529)
T ss_pred EEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCCCcc-c
Confidence 999999999999877 5567999999988 566666666 99999999999999988776421100 0
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
....++|. +.||+++++.+ +.+.+.+|+++++
T Consensus 264 ----------------------------------------------~~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~ 295 (529)
T PRK07867 264 ----------------------------------------------DADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVD 295 (529)
T ss_pred ----------------------------------------------ccccceEE-EecCCCChHHH-HHHHHHhCCcEEE
Confidence 00026785 56888888765 5566677999999
Q ss_pred ccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCC------------ccEEEE-ccCCcccccC
Q 009160 451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP------------RGEIVI-AGPNVTVGYF 517 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~------------~GEi~v-~g~~v~~GY~ 517 (541)
.||+||++...+.. .....+++|.|+++ ++|+|.+++... +.|+ .|||++ +|++++.||+
T Consensus 296 ~YG~TE~~~~~~~~--~~~~~~~~g~~~~~--~~i~~~~~~~~~---~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~ 368 (529)
T PRK07867 296 GFGSTEGGVAITRT--PDTPPGALGPLPPG--VAIVDPDTGTEC---PPAEDADGRLLNADEAIGELVNTAGPGGFEGYY 368 (529)
T ss_pred eecccccccccccC--CCCCCCCcCCCCCC--EEEEECCCCCCC---CCCccccccccccCCcceEEEEecCCccccccc
Confidence 99999987655432 22345789999999 778885455543 3455 899999 9999999999
Q ss_pred CCchhhHhhhccCCCceEEcccc
Q 009160 518 KNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 518 ~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++++.|.+.| .+|||+|+|+
T Consensus 369 ~~~~~~~~~~---~~g~~~TGD~ 388 (529)
T PRK07867 369 NDPEADAERM---RGGVYWSGDL 388 (529)
T ss_pred CChHhhhhhh---cCCeEeeccE
Confidence 9999999988 5889988874
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=397.47 Aligned_cols=395 Identities=22% Similarity=0.262 Sum_probs=301.0
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|+++++.+|+++|+.+ .++ .+||.||.++++++|..|.++|+++|++|+++
T Consensus 33 ~~l~~~l~~~a~~~p~~~al~~------------~~~-----------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~ 89 (567)
T PRK06178 33 RPLTEYLRAWARERPQRPAIIF------------YGH-----------VITYAELDELSDRFAALLRQRGVGAGDRVAVF 89 (567)
T ss_pred ccHHHHHHHHHHHCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 6799999999999999999976 444 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++|+++++||+++|++++|++|..+.+++.+++++++++++++++...+.+.+..... ..+.++..+........
T Consensus 90 ~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~-~~~~i~~~~~~~~~~~~ 168 (567)
T PRK06178 90 LPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET-SLRHVIVTSLADVLPAE 168 (567)
T ss_pred CCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC-CcceEEEeccccccccc
Confidence 99999999999999999999999999999999999999999999999998877776655443 33444443321110000
Q ss_pred c-ccc---c--CCeEEeeHHHHHhcccC--CCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 218 S-VEQ---S--GRWKITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 218 ~-~~~---~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
. ... . .......+.++...... .........++++++|+|||||||.||||++||++++..+.........+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~ 248 (567)
T PRK06178 169 PTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG 248 (567)
T ss_pred cccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccC
Confidence 0 000 0 00001112222221111 11122345679999999999999999999999999988766554432267
Q ss_pred CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 365 (541)
..+|++++++|++|.+++.. ++.+++.|+++++ +++..+++. ++++++|.+.++|..+..+.+..
T Consensus 249 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~~l~~~~ 317 (567)
T PRK06178 249 GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAA-----------VERYRVTRTVMLVDNAVELMDHP 317 (567)
T ss_pred CCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHHhCC
Confidence 88999999999999999865 6778999999988 455566666 99999999999999888776421
Q ss_pred HHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEE--ccCCCCHHHHHHHHHH
Q 009160 366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILS--GGAPLSADTQRFINIC 443 (541)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~--gg~~l~~~~~~~~~~~ 443 (541)
.. .. ....++|.+.. +++++++++.+.++..
T Consensus 318 ~~--~~---------------------------------------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 350 (567)
T PRK06178 318 RF--AE---------------------------------------------YDLSSLRQVRVVSFVKKLNPDYRQRWRAL 350 (567)
T ss_pred CC--CC---------------------------------------------CCcchheeeeeccccccCCHHHHHHHHHH
Confidence 00 00 00025666544 4589999999999999
Q ss_pred hCCccee-ccCcccccccccccCC---C----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccc
Q 009160 444 LGAPIGQ-GYGLTETCAGGTFSEV---D----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG 515 (541)
Q Consensus 444 ~g~~v~~-~YG~TE~~~~~~~~~~---~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~G 515 (541)
+|..++. .||+||++..++.... . ..+++++|+|+||++++|+|+++++.++ .|+.|||+|+|++++.|
T Consensus 351 ~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~---~g~~Gel~v~g~~v~~g 427 (567)
T PRK06178 351 TGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLP---LGAEGEIVVRTPSLLKG 427 (567)
T ss_pred hCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCC---CCCceEEEEECCccccc
Confidence 9887775 7999998765443221 1 1245779999999999999966676654 77899999999999999
Q ss_pred cCCCchhhHhhhccCCCceEEcccc
Q 009160 516 YFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 516 Y~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
||++++.|++.| .||||+|+|+
T Consensus 428 Y~~~~~~~~~~~---~dg~~~TGDl 449 (567)
T PRK06178 428 YWNKPEATAEAL---RDGWLHTGDI 449 (567)
T ss_pred ccCChhhhhhcc---cCCceeecce
Confidence 999999998887 5789888874
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=394.10 Aligned_cols=364 Identities=19% Similarity=0.222 Sum_probs=283.4
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...++.+.|.++++++|+++|+.+ +++ .+||.|+.++++++|+.|.+.|+++|++|+
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~lTy~el~~~~~~la~~L~~~gi~~g~~V~ 89 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIID------------DDG-----------ALSYRELQRATESLARRLTRDGVAPGRAVG 89 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEe------------CCC-----------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 357899999999999999999975 333 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
++++|+++++++++||+++|++++|+++.++.+++.+++++++++.++++++..+.+..... .++.++...
T Consensus 90 i~~~~~~~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~~--- 160 (516)
T PRK13383 90 VMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADD------AVAVIDPAT--- 160 (516)
T ss_pred EECCCCHHHHHHHHHHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhc------ceEEeccch---
Confidence 99999999999999999999999999999999999999999999999999876655443211 222222110
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHH--HHHHHhhCCCCCCCc
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT--VSAVMTIVPDLGSKD 293 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~--~~~~~~~~~~~~~~d 293 (541)
..... . ...+...++.++|+|||||||.||||+++|...... .......+ .+..+|
T Consensus 161 ---------------~~~~~----~--~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d 218 (516)
T PRK13383 161 ---------------AGAEE----S--GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGS 218 (516)
T ss_pred ---------------hhhhc----C--CCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCC
Confidence 00000 0 011123456789999999999999999999843211 11222334 678899
Q ss_pred EEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 294 VYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 294 ~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+++..+|++|.+++...+.++..|+++++ +++..+++. ++++++|.+.++|.++..+.+.......
T Consensus 219 ~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 287 (516)
T PRK13383 219 RISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAALAQ-----------ASLHRADAFTAVPVVLARILELPPRVRA 287 (516)
T ss_pred eEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEecHHHHHHHHhccccccc
Confidence 99999999999999888888999999987 555555655 8999999999999999888753211000
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
. ...+++|.+++||+++++++.+.|.+.+|+.+++
T Consensus 288 ~---------------------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~ 322 (516)
T PRK13383 288 R---------------------------------------------NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYN 322 (516)
T ss_pred c---------------------------------------------CCCCceEEEEECCCCCCHHHHHHHHHHcCchhhh
Confidence 0 0013899999999999999999999999999999
Q ss_pred ccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc
Q 009160 451 GYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~ 529 (541)
.||+||++......... ....+++|+|+++++++|+| ++++. .+.|+.|||+|+|+.++.||++++.. .+
T Consensus 323 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~---~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-- 393 (516)
T PRK13383 323 GYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILD-RNNRP---VGPRVTGRIFVGGELAGTRYTDGGGK---AV-- 393 (516)
T ss_pred cccccccccceeccccccccCCCcccCCCCCcEEEEEC-CCCCC---CCCCCceEEEEecCcccccccCCchh---he--
Confidence 99999997655433222 23458899999999999999 66654 34788999999999999999987642 12
Q ss_pred CCCceEEccc
Q 009160 530 MLDRFMLMVA 539 (541)
Q Consensus 530 d~dGw~~~~~ 539 (541)
.||||+|+|
T Consensus 394 -~~g~~~TGD 402 (516)
T PRK13383 394 -VDGMTSTGD 402 (516)
T ss_pred -ecCceecce
Confidence 345555555
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=392.19 Aligned_cols=394 Identities=24% Similarity=0.347 Sum_probs=297.4
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+.++.++|+++++.+|+++|+.. +++ .+||.||.++++++|.+|.+.|+++|++|++
T Consensus 20 ~~~~~~~~~~~~~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i 76 (541)
T TIGR03205 20 RGTLPDLLSKAAADYGPRPALEF------------RDR-----------PITYTELEAMAETAAAALLRAGYGKDASVAL 76 (541)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE------------CCc-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 45899999999999999999976 333 6999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc--hhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE--LKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++|+++++++++||+++|++++|++|..+.+++.++++.++++++|+++.. .+.+.+.... ..+..++..+.....
T Consensus 77 ~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 155 (541)
T TIGR03205 77 YLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK-GLLDRLIVCEDDNWG 155 (541)
T ss_pred ECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc-ccceEEEEecccccc
Confidence 9999999999999999999999999999999999999999999999998631 1222221111 123344444332110
Q ss_pred c--cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC-----C
Q 009160 215 A--VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-----P 287 (541)
Q Consensus 215 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~ 287 (541)
. .............+++++...... +.......++++++++|||||||.||||+++|+++....... ..+ .
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~ 233 (541)
T TIGR03205 156 KVGTPQAPIPADPRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRA 233 (541)
T ss_pred cccccccccCCCcccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-Hhhcccccc
Confidence 0 000000011234556666543211 112234567899999999999999999999999988655432 111 0
Q ss_pred CCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
.....+++++.+|++|.+++.. ++.++..|+++.+ .++..+++. ++++++|++.++|+++..+.+
T Consensus 234 ~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 302 (541)
T TIGR03205 234 TRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRD-----------IEEKRATVFPGVPTMWIALAN 302 (541)
T ss_pred cCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------HHHcCCeEeechHHHHHHHHh
Confidence 2234589999999999998776 5667899998877 455566666 999999999999999988764
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
..... ....+++|.+++||+++++++.+++++.
T Consensus 303 ~~~~~-----------------------------------------------~~~~~~l~~i~~gg~~~~~~~~~~~~~~ 335 (541)
T TIGR03205 303 DPSLE-----------------------------------------------KRDLSSLATIGSGGAPLPVEVANFFERK 335 (541)
T ss_pred Ccccc-----------------------------------------------ccCccccceEEEccccCCHHHHHHHHHH
Confidence 21000 0001389999999999999999999998
Q ss_pred hCCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCC-CCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPE-GGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~-~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
+++++++.||+||++..++..... ...++++|.|+++++++|++.++ ++. ++.|+.|||+|+|++++.||+++|+
T Consensus 336 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~---~~~g~~Gel~v~~~~~~~gy~~~~~ 412 (541)
T TIGR03205 336 TGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKV---LPPGEVGELRIRGPNVTRGYWNRPE 412 (541)
T ss_pred hCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCcc---CCCCCeeEEEEecCCccccccCChh
Confidence 999999999999998766554332 23467899999999999876443 343 3478899999999999999999999
Q ss_pred hhHhhhccCCCceEEcccc
Q 009160 522 KTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~~ 540 (541)
.|++.| .+|||+|+|+
T Consensus 413 ~~~~~~---~~~~~~TGD~ 428 (541)
T TIGR03205 413 ESAEAF---VGDRFLTGDI 428 (541)
T ss_pred hhHhhh---ccCCcccCce
Confidence 999888 3567776663
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=402.60 Aligned_cols=397 Identities=14% Similarity=0.106 Sum_probs=287.5
Q ss_pred HHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCC
Q 009160 61 AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT 140 (541)
Q Consensus 61 ~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n 140 (541)
..+|.+.++++|+++|+++.+. ++. .++.+.+||+||.++++++|++|++.|+++||+|+++++|
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~~e---------~~~------~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn 242 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWRDE---------GSD------DLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPM 242 (728)
T ss_pred HHHHHHHhccCCCCeEEEEECC---------CCC------CCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence 4466666667899999987420 111 1234679999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch------hHHHHhhcCCCCccEEEEecCCCcc
Q 009160 141 RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL------KKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 141 s~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
++|++++++||+++|++++|+++.++++++.+++++++++++|+++... +....+..... ..++.+......
T Consensus 243 ~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~--~~~iv~~~~~~~ 320 (728)
T PLN03052 243 NVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA--PKAIVLPADGKS 320 (728)
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcC--CcEEEEeCCCCc
Confidence 9999999999999999999999999999999999999999999986532 11111111111 123333221100
Q ss_pred ccccccccCCeEEeeHHHHHhcccCC----CCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 215 AVSSVEQSGRWKITSFADVQILGREN----PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
.... ......+|+++....... ..++....++++++|+|||||||.||||+++|.+++..+......+ +++
T Consensus 321 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-~l~ 395 (728)
T PLN03052 321 VRVK----LREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DIR 395 (728)
T ss_pred cccc----cccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-CCC
Confidence 0000 001124577765432211 1112223568999999999999999999999999887766555556 788
Q ss_pred CCcEEEEccChHHHHHHHHHHHHhhcCceEEeC----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
++|++++++|++|+++.+.++.+|..|+++++. ++..+++. ++++++|++..+|++++.+.+...
T Consensus 396 ~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~-----------i~~~~vT~l~~~Pt~l~~l~~~~~ 464 (728)
T PLN03052 396 KGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKF-----------VQDAKVTMLGTVPSIVKTWKNTNC 464 (728)
T ss_pred CCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHH-----------HHHHCCCEEEECHHHHHHHHhcCC
Confidence 999999999999999987788899999999983 23345555 999999999999999988765310
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhC-
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG- 445 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g- 445 (541)
. +....++||.+++||++++++...++...++
T Consensus 465 ~-----------------------------------------------~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~ 497 (728)
T PLN03052 465 M-----------------------------------------------AGLDWSSIRCFGSTGEASSVDDYLWLMSRAGY 497 (728)
T ss_pred c-----------------------------------------------ccCChhheeEEEecCCCCCHHHHHHHHHhcCC
Confidence 0 0001138999999999999999888888765
Q ss_pred CcceeccCcccccccccccC-CCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCC--CccEEEEccCC--cccccCCCc
Q 009160 446 APIGQGYGLTETCAGGTFSE-VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM--PRGEIVIAGPN--VTVGYFKNE 520 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g--~~GEi~v~g~~--v~~GY~~~~ 520 (541)
.++++.||+||+++...... ......+++|.|++|++++|+| ++|+.++ .| +.|||+|+++. ...+|+++.
T Consensus 498 ~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~---~g~~~~GEL~v~~~~~~~~~~~~~~~ 573 (728)
T PLN03052 498 KPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYP---DDAPCTGELALFPLMFGASSTLLNAD 573 (728)
T ss_pred CCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCC---CCCCceEEEEEeCCCCCCCccccCch
Confidence 58999999999876543322 2234568999999999999999 7887654 44 36999998652 233454432
Q ss_pred h-----------------hhHhhhccCCCceEEccccC
Q 009160 521 E-----------------KTKEVYKVMLDRFMLMVALR 541 (541)
Q Consensus 521 ~-----------------~t~~~f~~d~dGw~~~~~~~ 541 (541)
. .|.+..+.|+||++++.||.
T Consensus 574 ~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~ 611 (728)
T PLN03052 574 HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRA 611 (728)
T ss_pred hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecC
Confidence 1 22223355677777777763
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=387.37 Aligned_cols=345 Identities=23% Similarity=0.276 Sum_probs=278.2
Q ss_pred HHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHH
Q 009160 67 SCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFV 146 (541)
Q Consensus 67 ~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~ 146 (541)
.+++.++++|+.. +++ .+||.||.++++++|..|. ++++|+++++|+++|++
T Consensus 9 ~~~~~~~~~a~~~------------~~~-----------~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~ 60 (471)
T PRK07787 9 VAAAADIADAVRI------------GGR-----------VLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVL 60 (471)
T ss_pred hhcccCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHH
Confidence 3456788888876 444 7999999999999999996 47999999999999999
Q ss_pred HHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccccccccCCeE
Q 009160 147 ALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226 (541)
Q Consensus 147 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 226 (541)
+++||+++|++++|+++..+.+++.++++++++++++++.+.. ...++.+. +.. .
T Consensus 61 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~il~~~~~~------~~~~~~~~----~~~---------------~ 115 (471)
T PRK07787 61 AVVGALIAGVPVVPVPPDSGVAERRHILADSGAQAWLGPAPDD------PAGLPHVP----VRL---------------H 115 (471)
T ss_pred HHHHHHhcCcEEeecCCCCChHHHHHHHHhcCCCEEEecCCcc------ccccccee----eec---------------c
Confidence 9999999999999999999999999999999999999986311 00111100 000 0
Q ss_pred EeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHH
Q 009160 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLE 306 (541)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~ 306 (541)
..++ .......++|+++|+|||||||.||||+++|+++...+......+ .+..+|++++.+|++|.++
T Consensus 116 ~~~~-----------~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g 183 (471)
T PRK07787 116 ARSW-----------HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-QWTADDVLVHGLPLFHVHG 183 (471)
T ss_pred cccc-----------ccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-CCCccceeEeccCCeeech
Confidence 0000 011224578999999999999999999999999999988887777 7889999999999999999
Q ss_pred HHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHH
Q 009160 307 LVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDL 382 (541)
Q Consensus 307 ~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~ 382 (541)
++. ++.++..|+++++ +++..+++. ++ +++|++.++|+++..+.+.....
T Consensus 184 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~-~~~t~~~~~P~~~~~l~~~~~~~-------------- 237 (471)
T PRK07787 184 LVLGVLGPLRIGNRFVHTGRPTPEAYAQA-----------LS-EGGTLYFGVPTVWSRIAADPEAA-------------- 237 (471)
T ss_pred hHHHHHHHHhcCCEEEecCCCCHHHHHHH-----------Hh-hCceEEEcchHHHHHHHhCcccc--------------
Confidence 887 6778999999988 555566666 88 99999999999998887521100
Q ss_pred HHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCccccccccc
Q 009160 383 AYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462 (541)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~ 462 (541)
. ..+++|.+++||+++++++.+++++.++.++++.||+||++...+
T Consensus 238 ------~----------------------------~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~ 283 (471)
T PRK07787 238 ------R----------------------------ALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLS 283 (471)
T ss_pred ------c----------------------------cccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCccee
Confidence 0 013899999999999999999999999999999999999976554
Q ss_pred ccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 463 FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 463 ~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
........++++|+|+++++++|+| +++..++. +.+..|||+|+|++++.||+++++.|++.| .+||||+|+|+
T Consensus 284 ~~~~~~~~~~~vG~~~~g~~~~i~d-~~~~~~~~-~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~--~~~~~~~TGDl 357 (471)
T PRK07787 284 TRADGERRPGWVGLPLAGVETRLVD-EDGGPVPH-DGETVGELQVRGPTLFDGYLNRPDATAAAF--TADGWFRTGDV 357 (471)
T ss_pred cCCCCcccCCcccccCCCcEEEEEC-CCCCCCCC-CCCCceEEEEECcccchhhcCChhhchhcc--cCCCceecCce
Confidence 4433344568899999999999999 56655431 122479999999999999999999999998 77889888874
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=393.70 Aligned_cols=395 Identities=25% Similarity=0.346 Sum_probs=294.4
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|.+.++++|+++|+.+ +++ .+||.||.+++.++|+.|.+.|+++|++|++
T Consensus 23 ~~~~~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i 79 (563)
T PRK06710 23 IQPLHKYVEQMASRYPEKKALHF------------LGK-----------DITFSVFHDKVKRFANYLQKLGVEKGDRVAI 79 (563)
T ss_pred cccHHHHHHHHHHHCCCceEEEe------------cCe-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 35899999999999999999986 444 6999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCC--cc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI--PS 214 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~--~~ 214 (541)
+++|+.+++++++||+++|++++|++|..+.+++.++++.+++++++++......+...... .....++...... ..
T Consensus 80 ~~~~~~~~~~~~lA~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (563)
T PRK06710 80 MLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA-TKIEHVIVTRIADFLPF 158 (563)
T ss_pred ECCCChHHHHHHHHHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh-hccceeEEecccccccc
Confidence 99999999999999999999999999999999999999999999999988665444332221 1122232211000 00
Q ss_pred ccc-------cccc------cCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH
Q 009160 215 AVS-------SVEQ------SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281 (541)
Q Consensus 215 ~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~ 281 (541)
... .... ........|+.+.... ..........++++++++|||||||.||||.++|+++......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~ 237 (563)
T PRK06710 159 PKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLM 237 (563)
T ss_pred ccccccchhhcccccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHH
Confidence 000 0000 0000001122221111 1111112234578999999999999999999999999865443
Q ss_pred HHhhCCCC-CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHH
Q 009160 282 VMTIVPDL-GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPA 356 (541)
Q Consensus 282 ~~~~~~~~-~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 356 (541)
....+... ..++++++.+|++|.+++.. .+.++..|+++++ +++..+.+. ++++++|++.++|+
T Consensus 238 ~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~ 306 (563)
T PRK06710 238 GVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEA-----------IKKHKVTLFPGAPT 306 (563)
T ss_pred HHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHH-----------HHHcCCeEEeccHH
Confidence 33322133 34568899999999998866 4567889999888 344455555 99999999999999
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHH
Q 009160 357 ILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT 436 (541)
Q Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~ 436 (541)
++..+.+...... ...+++|.+++||+++++++
T Consensus 307 ~~~~l~~~~~~~~-----------------------------------------------~~~~~lr~v~~gg~~~~~~~ 339 (563)
T PRK06710 307 IYIALLNSPLLKE-----------------------------------------------YDISSIRACISGSAPLPVEV 339 (563)
T ss_pred HHHHHHcCCcccc-----------------------------------------------CChhhhhheeeCCCcCCHHH
Confidence 9988765211000 00027999999999999999
Q ss_pred HHHHHHHhCCcceeccCcccccccccccCC-CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccc
Q 009160 437 QRFINICLGAPIGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVG 515 (541)
Q Consensus 437 ~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~G 515 (541)
.+++++.+++++++.||+||++..+..... .....+++|+|+++++++|+|+++++.+ +.|+.|||+|+|+.++.|
T Consensus 340 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~---~~g~~Gel~v~g~~~~~g 416 (563)
T PRK06710 340 QEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEAL---PPGEIGEIVVKGPQIMKG 416 (563)
T ss_pred HHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccC---CCCCceEEEEecCccchh
Confidence 999999899999999999999876543322 2234578999999999999996666554 478899999999999999
Q ss_pred cCCCchhhHhhhccCCCceEEcccc
Q 009160 516 YFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 516 Y~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+++++.|.+.| .||||+|+|+
T Consensus 417 Y~~~~~~~~~~~---~~g~~~TGD~ 438 (563)
T PRK06710 417 YWNKPEETAAVL---QDGWLHTGDV 438 (563)
T ss_pred hhCChHHHhhhc---ccCcccccce
Confidence 999999999887 5889888874
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=389.96 Aligned_cols=395 Identities=25% Similarity=0.327 Sum_probs=298.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVA 135 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~ 135 (541)
..++.++|+++++++|+++|+.. +++ .+||.||.++++++|..|.+ .|+++|++|+
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~ 78 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFIN------------MGE-----------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVA 78 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEE------------CCc-----------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 46899999999999999999975 444 69999999999999999985 7999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
++++|+.+++++++||++.|++++|++|.++.+++.++++.+++++++++.+..+.+.++.... ....++.........
T Consensus 79 i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (560)
T PRK08974 79 LMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT-PVKHVILTRMGDQLS 157 (560)
T ss_pred EECCCCHHHHHHHHHHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc-CcceEEEeccccccc
Confidence 9999999999999999999999999999999999999999999999999877655555443222 223333221110000
Q ss_pred --cc------------cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH
Q 009160 216 --VS------------SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281 (541)
Q Consensus 216 --~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~ 281 (541)
.. ...........++.+....+...........++++++|+|||||||.||||.++|++++..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~ 237 (560)
T PRK08974 158 TAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQ 237 (560)
T ss_pred ccccccccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHH
Confidence 00 0000000011222333322222222223356789999999999999999999999999887665
Q ss_pred HHhhCC--CCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-C---CcccccccchhhhcCcccccccccceEEeec
Q 009160 282 VMTIVP--DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-G---TPLTLTDTSSKIKKGTQGDASVLRPTVMASV 354 (541)
Q Consensus 282 ~~~~~~--~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-~---~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~ 354 (541)
....+. .....+.++..+|++|.+++.. .+.++..|+++++ . ++..+++. ++++++|.+.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~ 306 (560)
T PRK08974 238 AKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKE-----------LKKYPFTAITGV 306 (560)
T ss_pred HHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHH-----------HHhcCcceEcCc
Confidence 443331 2345678899999999998765 5667888888776 2 23334444 899999999999
Q ss_pred HHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCH
Q 009160 355 PAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSA 434 (541)
Q Consensus 355 P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~ 434 (541)
|+++..+.+..... ....+++|.+++||+++++
T Consensus 307 p~~~~~l~~~~~~~-----------------------------------------------~~~~~~lr~~~~gg~~~~~ 339 (560)
T PRK08974 307 NTLFNALLNNEEFQ-----------------------------------------------ELDFSSLKLSVGGGMAVQQ 339 (560)
T ss_pred HHHHHHHHhCcCcc-----------------------------------------------cCCccceeEEEecCccCCH
Confidence 99999887531100 0011389999999999999
Q ss_pred HHHHHHHHHhCCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcc
Q 009160 435 DTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVT 513 (541)
Q Consensus 435 ~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~ 513 (541)
++.+.|++.+|+++++.||+||++..++..... ....+++|.|+|+++++|+| +++..+ +.|+.|||+|+|+.++
T Consensus 340 ~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~---~~g~~Gel~v~g~~~~ 415 (560)
T PRK08974 340 AVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEV---PPGEPGELWVKGPQVM 415 (560)
T ss_pred HHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCCC---CCCCceEEEEecCCcc
Confidence 999999998999999999999988776554332 23457899999999999999 666654 4788999999999999
Q ss_pred cccCCCchhhHhhhccCCCceEEcccc
Q 009160 514 VGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 514 ~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
.||+++++.+++.| .+|||.|+|+
T Consensus 416 ~gy~~~~~~~~~~~---~~g~~~TGDl 439 (560)
T PRK08974 416 LGYWQRPEATDEVI---KDGWLATGDI 439 (560)
T ss_pred hhhcCChhhhhhhh---hcCCcccCCE
Confidence 99999999998887 5788888774
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=386.06 Aligned_cols=367 Identities=21% Similarity=0.206 Sum_probs=295.7
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.++.++|+++++.+|+++|+.. ++. .+||.||.++++++|..|.+.|+++|++|+++
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~------------~~~-----------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~ 58 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDY------------LGE-----------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVF 58 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEe------------CCc-----------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 4688999999999999999875 333 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+.+|+++++||+++|++++|+++.++.+++.++++.+++++++++.+.... ..
T Consensus 59 ~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------------- 114 (503)
T PRK04813 59 GHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-------IL----------------- 114 (503)
T ss_pred cCCCHHHHHHHHHHHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-------cc-----------------
Confidence 999999999999999999999999999999999999999999999998764100 00
Q ss_pred cccccCCeEEeeHHHHHhccc--CCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 009160 218 SVEQSGRWKITSFADVQILGR--ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 295 (541)
.+....++++..... ..........++++++++|||||||.||||.++|+++...+.+....+ .+..+|++
T Consensus 115 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~ 187 (503)
T PRK04813 115 ------GIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQF 187 (503)
T ss_pred ------CCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCcee
Confidence 011222333322111 111112345678899999999999999999999999999888887777 78899999
Q ss_pred EEccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 296 LAYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 296 l~~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
++.+|++|..++..++.++..|+++++. ++..+++. ++++++|++.++|+++..+.......
T Consensus 188 ~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~-----------~~~~~~t~~~~~p~~~~~~~~~~~~~- 255 (503)
T PRK04813 188 LNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLFET-----------LPQLPINVWVSTPSFADMCLLDPSFN- 255 (503)
T ss_pred eecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHH-----------HHHcCCeEEEeChHHHHHHHHhhccC-
Confidence 9999999999988888899999998873 33444444 89999999999999998765431100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcc
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v 448 (541)
+...+++|.++++|+++++.+.+++.+.+ ++.+
T Consensus 256 ----------------------------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~ 289 (503)
T PRK04813 256 ----------------------------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATI 289 (503)
T ss_pred ----------------------------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceE
Confidence 00113899999999999999999999988 7899
Q ss_pred eeccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 449 GQGYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
++.||+||++...+..... .....++|.|.++++++|+| +++..++ .|+.|||+|+|+.++.|||++++.|
T Consensus 290 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~---~g~~Gel~v~~~~~~~gy~~~~~~~ 365 (503)
T PRK04813 290 YNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLP---DGEQGEIVISGPSVSKGYLNNPEKT 365 (503)
T ss_pred EeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCC---CCCceEEEEeccccccccCCChhHh
Confidence 9999999987654432211 23446899999999999999 6666544 6789999999999999999999999
Q ss_pred Hhhhcc-CCCceEEcccc
Q 009160 524 KEVYKV-MLDRFMLMVAL 540 (541)
Q Consensus 524 ~~~f~~-d~dGw~~~~~~ 540 (541)
.+.|+. +.++||+|+|+
T Consensus 366 ~~~~~~~~g~~~~~tGD~ 383 (503)
T PRK04813 366 AEAFFTFDGQPAYHTGDA 383 (503)
T ss_pred HHhhccCCCceeEECCce
Confidence 998832 23359998874
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=395.39 Aligned_cols=380 Identities=23% Similarity=0.293 Sum_probs=289.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
+++..++.++|+.+++++|+..++.. +++ .++.+||.||.++++++|++|.++|+++|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--------~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~ 76 (579)
T PRK09192 17 YADFPTLVEALDYAALGEAGMNFYDR------------RGQ--------LEEALPYQTLRARAEAGARRLLALGLKPGDR 76 (579)
T ss_pred ccchhhHHHHHHHhhccCCceEEEec------------CCC--------EEEEecHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 35667999999999999886654421 222 2357999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCC-------HHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEE
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLG-------EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVI 206 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii 206 (541)
|+++++|+++|+++++||+++|++++|+++..+ .+++.++++.++++++|+++...+.+.+...... .
T Consensus 77 V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~---~-- 151 (579)
T PRK09192 77 VALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNP---L-- 151 (579)
T ss_pred EEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcccc---c--
Confidence 999999999999999999999999999987543 6899999999999999999876665554322111 0
Q ss_pred EecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh-h
Q 009160 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-I 285 (541)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~ 285 (541)
....+++++...... ........++++++|+|||||||.||||+++|++++..+..... .
T Consensus 152 ------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~ 212 (579)
T PRK09192 152 ------------------LHVLSHAWFKALPEA-DVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDG 212 (579)
T ss_pred ------------------cceeehhhhcccCCC-ccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhc
Confidence 111223333322111 11123356789999999999999999999999999998887776 5
Q ss_pred CCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHH
Q 009160 286 VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357 (541)
Q Consensus 286 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 357 (541)
+ ++.++|++++.+|++|.+++.. ++.++..|+++.+. +|..+++. +.++++|+++..|.+
T Consensus 213 ~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~ 280 (579)
T PRK09192 213 L-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDL-----------ISRNRGTISYSPPFG 280 (579)
T ss_pred c-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHH-----------HHhcCcEEEeCCcHH
Confidence 6 7889999999999999999886 55668889988763 23344444 999999987776665
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHH
Q 009160 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ 437 (541)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 437 (541)
+..+........ .+....+++|.+++||+++++++.
T Consensus 281 ~~l~~~~~~~~~--------------------------------------------~~~~~l~~lr~~~~gG~~l~~~~~ 316 (579)
T PRK09192 281 YELCARRVNSKD--------------------------------------------LAELDLSCWRVAGIGADMIRPDVL 316 (579)
T ss_pred HHHHHHhhcccc--------------------------------------------ccccchhhhheeEecCccCCHHHH
Confidence 555443211000 000011389999999999999999
Q ss_pred HHHHHHhC------CcceeccCcccccccccccCCCCC----------------------------CCCCcCCCcCCeEE
Q 009160 438 RFINICLG------APIGQGYGLTETCAGGTFSEVDDS----------------------------SVGRVGAPLPCSFI 483 (541)
Q Consensus 438 ~~~~~~~g------~~v~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~vG~p~~~~ev 483 (541)
+.+.+.++ ..+++.||+||+++..+....... ..+++|+|+|++++
T Consensus 317 ~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v 396 (579)
T PRK09192 317 HQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEI 396 (579)
T ss_pred HHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEE
Confidence 99888773 348999999999876554322110 12579999999999
Q ss_pred EEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 484 ~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+|+| ++++.+ +.++.|||+|+|+++++|||++ +.+.+.+ ..||||+|+|+
T Consensus 397 ~i~d-~~~~~~---~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~--~~dgw~~TGDl 446 (579)
T PRK09192 397 EIRN-EAGMPL---PERVVGHICVRGPSLMSGYFRD-EESQDVL--AADGWLDTGDL 446 (579)
T ss_pred EEEC-CCCCCC---CCCCEEEEEecCCchhhhhcCC-ccccccc--cCCceeeccce
Confidence 9999 666654 4778999999999999999999 6787877 78999999874
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=422.77 Aligned_cols=379 Identities=22% Similarity=0.237 Sum_probs=290.7
Q ss_pred CCCCHHHHHHHHHHHcCC-CCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 56 GISTLAELFEQSCKEHGD-KYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~-~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
...++.+.|.++++++|+ +.++.+. ++ +.+||+|+.++++++|+.|++ |+++||+|
T Consensus 629 ~~~~~~~~l~~~~~~~~~~~~ai~~~-----------~~-----------~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V 685 (1140)
T PRK06814 629 YDRTLFEALIEAAKIHGFKKLAVEDP-----------VN-----------GPLTYRKLLTGAFVLGRKLKK-NTPPGENV 685 (1140)
T ss_pred ccCCHHHHHHHHHHHcCCCCeEeECC-----------CC-----------CccCHHHHHHHHHHHHHHHHh-cCCCCCeE
Confidence 346788999999999875 5555421 22 369999999999999999975 99999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHH--HHhhcCCCCccEEEEecCCC
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKL--VDLSGQLDTVKHVICMDANI 212 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~--~~~~~~~~~~~~ii~~~~~~ 212 (541)
+++++|+++++++++||+++|++++|+|++.+++++.+++++++++++|++++..+.. .+....++....++.+++..
T Consensus 686 ~i~~~n~~~~~~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 765 (1140)
T PRK06814 686 GVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVR 765 (1140)
T ss_pred EEEcCCchHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhh
Confidence 9999999999999999999999999999999999999999999999999997654322 11112223333455554321
Q ss_pred ccccccccccCCeEEeeHHHHHhccc-CCC-CCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGR-ENP-VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
.. ...++.+..... ..+ .......++|+++|+|||||||.||||+++|+++.+.+......+ .++
T Consensus 766 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~ 832 (1140)
T PRK06814 766 AQ------------IGLADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFS 832 (1140)
T ss_pred cc------------CChHHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-CCC
Confidence 10 001111111100 011 111235789999999999999999999999999999888887777 888
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCC-c---ccccccchhhhcCcccccccccceEEeecHHHHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGT-P---LTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~-~---~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 365 (541)
++|++++.+|++|.+++.. .+.++..|+++++.+ + ..+.+. ++++++|+++++|+++..+.+..
T Consensus 833 ~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~l~~l~~~~ 901 (1140)
T PRK06814 833 PEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPEL-----------IYDTNATILFGTDTFLNGYARYA 901 (1140)
T ss_pred CcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHH-----------HHhcCCEEEEecHHHHHHHHhhc
Confidence 9999999999999999854 677899999998832 2 223344 88999999999999998776531
Q ss_pred HHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhC
Q 009160 366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445 (541)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g 445 (541)
.. ...+++|.+++||+++++++.+.+++.+|
T Consensus 902 ~~-------------------------------------------------~~~~~lr~v~~gg~~l~~~~~~~~~~~~~ 932 (1140)
T PRK06814 902 HP-------------------------------------------------YDFRSLRYVFAGAEKVKEETRQTWMEKFG 932 (1140)
T ss_pred cc-------------------------------------------------ccccceeEEEEcCCcCCHHHHHHHHHHhC
Confidence 00 00138999999999999999999999999
Q ss_pred CcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 446 APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
++++|.||+||++..++.......+.+++|+|+|++++++++.+ + .++.|||+|+|++++.|||++++.+..
T Consensus 933 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~-~-------~~~~Gel~v~g~~~~~gY~~~~~~~~~ 1004 (1140)
T PRK06814 933 IRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVP-G-------IDEGGRLFVRGPNVMLGYLRAENPGVL 1004 (1140)
T ss_pred CcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecC-C-------CCCceEEEEeCCCcchhhcCCCCCCcc
Confidence 99999999999988766555445567899999999999998832 2 246799999999999999998754321
Q ss_pred hhccCCCceEEcccc
Q 009160 526 VYKVMLDRFMLMVAL 540 (541)
Q Consensus 526 ~f~~d~dGw~~~~~~ 540 (541)
.. ..||||+|+|+
T Consensus 1005 ~~--~~~g~~~TGDl 1017 (1140)
T PRK06814 1005 EP--PADGWYDTGDI 1017 (1140)
T ss_pred cc--CCCCeEecCCE
Confidence 11 35777777764
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=394.46 Aligned_cols=389 Identities=21% Similarity=0.249 Sum_probs=278.6
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
++.++|++++..+|+++|+.+.+. ++. ..+..+.+||.||.++++++|++|.+.| .+||+|++++
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~~~---------~~~-----~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~ 66 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFIDY---------EQD-----PAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILA 66 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEEcc---------CCC-----CCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEc
Confidence 688999999999999999986421 100 0122358999999999999999999999 6899999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccC---CCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCC--CCccEEEEecCCCc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYA---SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQL--DTVKHVICMDANIP 213 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~ 213 (541)
+|+++|+++++||+++|++++|+++ ..+.+++.++++++++++++++++..+.+.+..... .....++.++..
T Consensus 67 ~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (578)
T PRK05850 67 PQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-- 144 (578)
T ss_pred CCcccHHHHHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc--
Confidence 9999999999999999999999997 457899999999999999999987766554432111 011112222110
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC-----
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD----- 288 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~----- 288 (541)
++ ............++++++|+|||||||.||||+++|+++++.+......+..
T Consensus 145 ------------------~~---~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~ 203 (578)
T PRK05850 145 ------------------DL---DSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGV 203 (578)
T ss_pred ------------------cc---ccCCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccC
Confidence 00 0000011223457899999999999999999999999999877665443201
Q ss_pred CCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHH-HHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR-DGVR 366 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~-~~~~ 366 (541)
...+|++++.+|++|.++++. ++.+++.|+++++.++..+... +..+...+++++++++ .+|..+..+. ....
T Consensus 204 ~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~----p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~ 278 (578)
T PRK05850 204 PPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQR----PARWMQLLASNPHAFS-AAPNFAFELAVRKTS 278 (578)
T ss_pred CCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHC----HHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcc
Confidence 456889999999999999876 7788999999988543222111 1122233889999865 5665543332 2110
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhC-
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG- 445 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g- 445 (541)
.. . ......+++|.+++||+++++++.+.|.+.++
T Consensus 279 ~~-~-------------------------------------------~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~ 314 (578)
T PRK05850 279 DD-D-------------------------------------------MAGLDLGGVLGIISGSERVHPATLKRFADRFAP 314 (578)
T ss_pred hh-h-------------------------------------------hcCcchhhheeEEECcCCCCHHHHHHHHHHHHh
Confidence 00 0 00001138999999999999999999988763
Q ss_pred -----CcceeccCcccccccccccCCCCC-------------------------CCCCcCCCcCCeEEEEEecCCCCccC
Q 009160 446 -----APIGQGYGLTETCAGGTFSEVDDS-------------------------SVGRVGAPLPCSFIKLIDWPEGGYLT 495 (541)
Q Consensus 446 -----~~v~~~YG~TE~~~~~~~~~~~~~-------------------------~~~~vG~p~~~~ev~ivd~~~~~~~~ 495 (541)
..+++.||+||++..+........ ...++|.|. +.+++|+|.+++..
T Consensus 315 ~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~-- 391 (578)
T PRK05850 315 FNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIE-- 391 (578)
T ss_pred cCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcC--
Confidence 368999999998765443221100 012455654 68999999544554
Q ss_pred CCCCCCccEEEEccCCcccccCCCchhhHhhhccC-----------CCceEEcccc
Q 009160 496 SDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVM-----------LDRFMLMVAL 540 (541)
Q Consensus 496 ~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d-----------~dGw~~~~~~ 540 (541)
++.|+.|||+|+|++++.|||++|+.|++.| + .+|||+|+|+
T Consensus 392 -~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f--~~~~~~~~~~~~~~~w~~TGDl 444 (578)
T PRK05850 392 -CPAGTVGEIWVHGDNVAAGYWQKPEETERTF--GATLVDPSPGTPEGPWLRTGDL 444 (578)
T ss_pred -CCCCCEEEEEEecCcccccccCChhhhHHHh--hcccccccccCCCCCeeeccce
Confidence 4578999999999999999999999999998 3 2579999885
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=393.58 Aligned_cols=386 Identities=20% Similarity=0.231 Sum_probs=294.8
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...|+.++|.++++++|+++|+.+ +++ .+||+||.++++++|..|.+.|+++|++|+
T Consensus 35 ~~~tl~~~l~~~a~~~p~~~Ai~~------------~~~-----------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~ 91 (600)
T PRK08279 35 SKRSLGDVFEEAAARHPDRPALLF------------EDQ-----------SISYAELNARANRYAHWAAARGVGKGDVVA 91 (600)
T ss_pred CcccHHHHHHHHHHhCCCCcEEEe------------CCC-----------cccHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 346899999999999999999986 333 699999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
++++|+.+++++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.+..........++..++....
T Consensus 92 i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (600)
T PRK08279 92 LLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLD- 170 (600)
T ss_pred EECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCcccc-
Confidence 9999999999999999999999999999999999999999999999999988877776655444333333333321100
Q ss_pred cccccccCCeEEeeHHHHHhcccCCC----CCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCC
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENP----VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (541)
....+.++.......+ .......++++++|+|||||||.||||++||+++++.+.+....+ .+++
T Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~l~~ 239 (600)
T PRK08279 171 ----------DPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTP 239 (600)
T ss_pred ----------ccccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-CCCC
Confidence 0122444433222211 112344678999999999999999999999999999998887777 8999
Q ss_pred CcEEEEccChHHHHHHHHH-HHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVAE-NLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~~-~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
+|++++.+|++|.+++... +.++..|+++++ +++..+++. ++++++|++.++|++++.+......
T Consensus 240 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~l~~~l~~~~~~ 308 (600)
T PRK08279 240 DDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDD-----------VRRYRATAFQYIGELCRYLLNQPPK 308 (600)
T ss_pred CcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHH-----------HHHhcceEEeehHHHHHHHHhCCCC
Confidence 9999999999999998874 456888888888 555566666 9999999999999999887653111
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC-
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA- 446 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~- 446 (541)
... ...++|.+ +|+++++++.+.+.+.++.
T Consensus 309 ~~~-----------------------------------------------~~~~l~~~--~g~~l~~~~~~~~~~~~~~~ 339 (600)
T PRK08279 309 PTD-----------------------------------------------RDHRLRLM--IGNGLRPDIWDEFQQRFGIP 339 (600)
T ss_pred ccc-----------------------------------------------cCcceeEE--ecCCCCHHHHHHHHHHhCcc
Confidence 000 00267764 4778999999999999876
Q ss_pred cceeccCcccccccccccCCCCCCCCCcCCCcC----CeEEEEEecCCCC-------ccCCCCCCCccEEE--EccCCcc
Q 009160 447 PIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP----CSFIKLIDWPEGG-------YLTSDSPMPRGEIV--IAGPNVT 513 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~----~~ev~ivd~~~~~-------~~~~~~~g~~GEi~--v~g~~v~ 513 (541)
.++|.||+||++...+. .....+++|.+.+ +..+...+.+.+. ....+++|+.|||+ |+|++++
T Consensus 340 ~l~~~YG~tE~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~ 416 (600)
T PRK08279 340 RILEFYAASEGNVGFIN---VFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPF 416 (600)
T ss_pred eeeeeecccccceeecc---cCCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCcccc
Confidence 59999999998754322 1234567887666 3333222211121 11224678899998 7899999
Q ss_pred cccCCCchhhHhhhc----cCCCceEEcccc
Q 009160 514 VGYFKNEEKTKEVYK----VMLDRFMLMVAL 540 (541)
Q Consensus 514 ~GY~~~~~~t~~~f~----~d~dGw~~~~~~ 540 (541)
.|| ++++.|++.|. .+.+|||+|+|+
T Consensus 417 ~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDl 446 (600)
T PRK08279 417 DGY-TDPEASEKKILRDVFKKGDAWFNTGDL 446 (600)
T ss_pred ccc-CCchhhHHHHhhcccCCCCceEeecce
Confidence 999 99999988872 234789998885
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=384.67 Aligned_cols=372 Identities=18% Similarity=0.216 Sum_probs=279.7
Q ss_pred HHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHH
Q 009160 66 QSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWF 145 (541)
Q Consensus 66 ~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~ 145 (541)
.+++++|+++|+.+.+ +|+ .+||.||.++++++|+.|.+.|+++||+|+++++|+++++
T Consensus 5 ~~a~~~p~~~a~~~~~----------~~~-----------~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~ 63 (501)
T PRK13390 5 THAQIAPDRPAVIVAE----------TGE-----------QVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEAL 63 (501)
T ss_pred hhhhhCCCCcEEEecC----------CCe-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 4578899999997521 233 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccccccccCCe
Q 009160 146 VALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW 225 (541)
Q Consensus 146 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 225 (541)
++++||+++|++++|+++.++++++.++++.++++++++++............. ...+.+.... .
T Consensus 64 ~~~la~~~~Ga~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~------------~ 128 (501)
T PRK13390 64 VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADL---PLRLSFGGEI------------D 128 (501)
T ss_pred HHHHHHHHhCCEEeccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhcc---ceEEEecCcc------------c
Confidence 999999999999999999999999999999999999999876543332222111 1122221110 0
Q ss_pred EEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEe--chHHHHHHH----HHHHhhCCCCCCCcEEEEcc
Q 009160 226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMM--THGNVLATV----SAVMTIVPDLGSKDVYLAYL 299 (541)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~l~~~~----~~~~~~~~~~~~~d~~l~~~ 299 (541)
...++++..... .+......+.++|+|||||||.||||++ +|.++.... ......+ .++.+|++++.+
T Consensus 129 ~~~~~~~~~~~~-----~~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 202 (501)
T PRK13390 129 GFGSFEAALAGA-----GPRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSSA 202 (501)
T ss_pred ccccHHHHhccc-----CCCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEecc
Confidence 112233332211 0111122357999999999999999995 566654422 1112234 678899999999
Q ss_pred ChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchh
Q 009160 300 PLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLS 376 (541)
Q Consensus 300 pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 376 (541)
|++|.+++...+..+..|+++++ +++..+++. ++++++|++.++|+++..+.+.......
T Consensus 203 p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~------ 265 (501)
T PRK13390 203 PIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGH-----------VERYRITVTQMVPTMFVRLLKLDADVRT------ 265 (501)
T ss_pred cchhhhHHHHHHHHHhcCceEEEcCCcCHHHHHHH-----------HHHcCCeEEEecHHHHHHHHhccchhcc------
Confidence 99999988665556778999988 455566666 9999999999999999888753211000
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCccc
Q 009160 377 KKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE 456 (541)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE 456 (541)
....+++|.+++||+++++++.+.+++.+|.++++.||+||
T Consensus 266 ---------------------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE 306 (501)
T PRK13390 266 ---------------------------------------RYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTE 306 (501)
T ss_pred ---------------------------------------cCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccc
Confidence 00013789999999999999999999989999999999999
Q ss_pred ccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceE
Q 009160 457 TCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFM 535 (541)
Q Consensus 457 ~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~ 535 (541)
+++++...... ....+++|+|+++ +++|+| ++++.+ ++|+.|||+|+|++++.||+++|+.|++.|.-+.+||+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~---~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~ 381 (501)
T PRK13390 307 AHGMTFIDSPDWLAHPGSVGRSVLG-DLHICD-DDGNEL---PAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWT 381 (501)
T ss_pred cCceEEecchhhccCCCCcCCcccc-eEEEEC-CCCCCC---CCCCceEEEEecCCccccccCChhhhHHhhccCCCceE
Confidence 98755433222 2345899999999 799999 676654 58899999999999999999999999998722236788
Q ss_pred Ecccc
Q 009160 536 LMVAL 540 (541)
Q Consensus 536 ~~~~~ 540 (541)
+|+|+
T Consensus 382 ~tGDl 386 (501)
T PRK13390 382 TVGDL 386 (501)
T ss_pred EcCce
Confidence 87763
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=382.23 Aligned_cols=376 Identities=19% Similarity=0.203 Sum_probs=294.3
Q ss_pred HHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH
Q 009160 65 EQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW 144 (541)
Q Consensus 65 ~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~ 144 (541)
...++++|+++|+.+.. +++ .+||.||.++++++|+.|.+.|+++|++|+++++|++++
T Consensus 4 ~~~a~~~p~~~a~~~~~----------~~~-----------~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~ 62 (511)
T PRK13391 4 GIHAQTTPDKPAVIMAS----------TGE-----------VVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRY 62 (511)
T ss_pred hhhHhhCCCceEEEecC----------CCC-----------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 46688999999997521 233 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccccccccCC
Q 009160 145 FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224 (541)
Q Consensus 145 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 224 (541)
+++++||++.|++++|+++.++.+++.++++.++++.++++......+.+....++.....+.++.....
T Consensus 63 ~~~~~a~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 132 (511)
T PRK13391 63 LEVCWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGEL---------- 132 (511)
T ss_pred HHHHHHHHHhccEEeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCC----------
Confidence 9999999999999999999999999999999999999999988776666665555555555555432111
Q ss_pred eEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEe--chHHHHHHH---HHHHhhCCCCCCCcEEEEcc
Q 009160 225 WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMM--THGNVLATV---SAVMTIVPDLGSKDVYLAYL 299 (541)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~--th~~l~~~~---~~~~~~~~~~~~~d~~l~~~ 299 (541)
.....+++.... .+. ......++.++++|||||||.||||++ +|.++.... ......+ .+.+++++++.+
T Consensus 133 ~~~~~~~~~~~~---~~~-~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 207 (511)
T PRK13391 133 EGFVGYAEAVAG---LPA-TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLSPA 207 (511)
T ss_pred cccccHHHHhcC---CCC-CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEEcC
Confidence 111223333221 111 112234567899999999999999995 566654332 2233445 678899999999
Q ss_pred ChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchh
Q 009160 300 PLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLS 376 (541)
Q Consensus 300 pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~ 376 (541)
|++|.+++...+.++..|+++++ +++..+++. ++++++|++.++|+++..+.+.......
T Consensus 208 p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~~~~------ 270 (511)
T PRK13391 208 PLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLAL-----------IEEYGVTHTQLVPTMFSRMLKLPEEVRD------ 270 (511)
T ss_pred CHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHHH-----------HHHhCCeEEEehHHHHHHHHhCchhhcc------
Confidence 99999998888888999999988 566666666 9999999999999999887653211000
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCccc
Q 009160 377 KKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE 456 (541)
Q Consensus 377 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE 456 (541)
....+++|.+++||+++++++.+.+++.+|..+++.||+||
T Consensus 271 ---------------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE 311 (511)
T PRK13391 271 ---------------------------------------KYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATE 311 (511)
T ss_pred ---------------------------------------cCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeecccc
Confidence 00113899999999999999999999999999999999999
Q ss_pred ccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCC-Cce
Q 009160 457 TCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVML-DRF 534 (541)
Q Consensus 457 ~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~-dGw 534 (541)
+++++...... ...++++|+|+++ +++|+| ++++.. +.|..|||+++|+ ++.|||++++.|++.| +. +||
T Consensus 312 ~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~---~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~--~~~~~w 383 (511)
T PRK13391 312 GLGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAEL---PPGEPGTIWFEGG-RPFEYLNDPAKTAEAR--HPDGTW 383 (511)
T ss_pred ccceEEecCccccccCCCcCCcccc-eEEEEC-CCCCCC---CCCCceEEEEecC-cceEEcCChhHhHHhh--ccCCCE
Confidence 98765443322 2345899999999 699999 666554 4788999999999 8999999999999998 44 499
Q ss_pred EEcccc
Q 009160 535 MLMVAL 540 (541)
Q Consensus 535 ~~~~~~ 540 (541)
++|+|+
T Consensus 384 ~~TGD~ 389 (511)
T PRK13391 384 STVGDI 389 (511)
T ss_pred EecCCE
Confidence 999874
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-44 Score=382.08 Aligned_cols=391 Identities=19% Similarity=0.199 Sum_probs=291.6
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.+..+.|++.++.+|+++|+.. ++. .+||.||.++++++|..|.+.|+++|++|+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~------------~~~-----------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~ 74 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIH------------GDR-----------RRTWAETYARCRRLASALARRGIGRGDTVAVL 74 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEE------------CCe-----------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5788999999999999999975 333 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++++++++||+++|++++|+++.++.+++.++++.++++.++++.+..+.+.+.....+..+. +.++......
T Consensus 75 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 151 (545)
T PRK08162 75 LPNIPAMVEAHFGVPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKP-LVIDVDDPEY-- 151 (545)
T ss_pred CCCchHHHHHHHHHHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCce-EEEecCcccc--
Confidence 9999999999999999999999999999999999999999999999999887766655443333222 2222111110
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
.....+...+++++................+++++|+|||||||.||||+++|+++...+......+ .+..+|++++
T Consensus 152 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l~ 228 (545)
T PRK08162 152 --PGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYLW 228 (545)
T ss_pred --ccCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeEe
Confidence 0001123345666654322111111233456899999999999999999999999877766655556 6788899999
Q ss_pred ccChHHHHHHHHHHHH-hhcCceEEe--CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCc
Q 009160 298 YLPLAHVLELVAENLI-AGVGSAIGY--GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG 374 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~-l~~G~~v~~--~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 374 (541)
.+|++|.+++...+.. +..|.++++ .++..+++. ++++++|++.++|.++..+.+........
T Consensus 229 ~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------l~~~~~t~~~~~P~~~~~l~~~~~~~~~~--- 294 (545)
T PRK08162 229 TLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKLIFDL-----------IREHGVTHYCGAPIVLSALINAPAEWRAG--- 294 (545)
T ss_pred ccCcHhhhhHHHHHHHHHHccEEEEeCCCCHHHHHHH-----------HHHcCCeEEEechHHHHHHHhCccccccC---
Confidence 9999999988765444 444444444 566677777 99999999999999999887632110000
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCc
Q 009160 375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454 (541)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~ 454 (541)
..+.+.+++||+++++++.+++++. ++++++.||+
T Consensus 295 --------------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~ 329 (545)
T PRK08162 295 --------------------------------------------IDHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGL 329 (545)
T ss_pred --------------------------------------------CccceEEEECCCCCCHHHHHHHHHh-CCceeecccc
Confidence 0145667899999999999998875 9999999999
Q ss_pred ccccccccccCCC-----------CCCCCCcCCCcC-CeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchh
Q 009160 455 TETCAGGTFSEVD-----------DSSVGRVGAPLP-CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522 (541)
Q Consensus 455 TE~~~~~~~~~~~-----------~~~~~~vG~p~~-~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~ 522 (541)
||+++.++..... ....+++|.+.+ +.+++|+|+++++.++ .+.+..|||+|+|+.++.|||++++.
T Consensus 330 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~-~~g~~~Gel~v~g~~~~~gY~~~~~~ 408 (545)
T PRK08162 330 TETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVP-ADGETIGEIMFRGNIVMKGYLKNPKA 408 (545)
T ss_pred cccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccC-CCCCceeEEEEecCcchhhhcCChhh
Confidence 9986554432111 011355677665 3468899955665543 11124699999999999999999999
Q ss_pred hHhhhccCCCceEEcccc
Q 009160 523 TKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 523 t~~~f~~d~dGw~~~~~~ 540 (541)
|++.| .+|||.|+|+
T Consensus 409 ~~~~~---~~g~~~TGDl 423 (545)
T PRK08162 409 TEEAF---AGGWFHTGDL 423 (545)
T ss_pred hHHHh---hCCCcccCce
Confidence 99988 5678777764
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=378.54 Aligned_cols=386 Identities=21% Similarity=0.250 Sum_probs=296.4
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
|+.++|.+.++++|+++|+.+ +++ .+||.||.++++++|+.|.+.|+++|++|++++
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~------------~~~-----------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~ 60 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVC------------GDR-----------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYA 60 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEE------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 699999999999999999986 443 799999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+++|+++++||+++|++++|+++.++.+++.++++++++++++++......+.++....+..+.++.+++.....
T Consensus 61 ~n~~~~~~~~~a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 137 (533)
T PRK07798 61 RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGND--- 137 (533)
T ss_pred CCCHHHHHHHHHHHhcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccc---
Confidence 99999999999999999999999999999999999999999999999887777777666667777777776543211
Q ss_pred ccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--------CCC-
Q 009160 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--------PDL- 289 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--------~~~- 289 (541)
......+++++........ ......++.++|+|||||||.||||+++|+++..........+ ..+
T Consensus 138 ----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (533)
T PRK07798 138 ----LLPGAVDYEDALAAGSPER--DFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELA 211 (533)
T ss_pred ----cCCccccHHHHHhccCCcC--CCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhc
Confidence 0112345676654432221 1112234557999999999999999999999986554422211 011
Q ss_pred -----CCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCC-----cccccccchhhhcCcccccccccceEEeecHHHHH
Q 009160 290 -----GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT-----PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359 (541)
Q Consensus 290 -----~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~-----~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 359 (541)
..+++++..+|++|..+++..+.+++.|+++++.+ +..+++. ++++++|.+.++|..+.
T Consensus 212 ~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~~~~~~ 280 (533)
T PRK07798 212 KRAAAGPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRT-----------IEREKVNVITIVGDAMA 280 (533)
T ss_pred ccccCCCCceEEEecchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHH-----------HHHhCCeEEEechHHHH
Confidence 56789999999999999998899999999999944 4444444 99999999999987664
Q ss_pred H-HHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHH
Q 009160 360 R-VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQR 438 (541)
Q Consensus 360 ~-l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~ 438 (541)
. +.+... +. .....+++|.+++||+++++++.+
T Consensus 281 ~~l~~~~~-~~---------------------------------------------~~~~~~~l~~i~~gG~~~~~~~~~ 314 (533)
T PRK07798 281 RPLLDALE-AR---------------------------------------------GPYDLSSLFAIASGGALFSPSVKE 314 (533)
T ss_pred HHHHHHhc-cc---------------------------------------------ccCCCCceEEEEECCCCCCHHHHH
Confidence 4 322211 00 001124899999999999999999
Q ss_pred HHHHHh-CCcceeccCcccccccccccCCCCCCCCCcC--CCcCCeEEEEEecCCCCccCCCCCCCc--cEEEEccCCcc
Q 009160 439 FINICL-GAPIGQGYGLTETCAGGTFSEVDDSSVGRVG--APLPCSFIKLIDWPEGGYLTSDSPMPR--GEIVIAGPNVT 513 (541)
Q Consensus 439 ~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG--~p~~~~ev~ivd~~~~~~~~~~~~g~~--GEi~v~g~~v~ 513 (541)
++++.+ +..+++.||+||++......... .....| .+.++.+++|+| ++++.++ .|+. ||++ +++.++
T Consensus 315 ~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~g~~~~~~~~~~~i~~-~~~~~~~---~g~~~~g~l~-~~~~~~ 387 (533)
T PRK07798 315 ALLELLPNVVLTDSIGSSETGFGGSGTVAK--GAVHTGGPRFTIGPRTVVLD-EDGNPVE---PGSGEIGWIA-RRGHIP 387 (533)
T ss_pred HHHHHcCCCeEEeeecccccccccccCCCC--CCccCCCCccCCCceEEEEC-CCCCCCC---CCCCCeeEEE-eecCcc
Confidence 999988 78999999999986554433221 122344 788999999999 6776544 5555 6665 566899
Q ss_pred cccCCCchhhHhhhcc-CCCceEEcccc
Q 009160 514 VGYFKNEEKTKEVYKV-MLDRFMLMVAL 540 (541)
Q Consensus 514 ~GY~~~~~~t~~~f~~-d~dGw~~~~~~ 540 (541)
.|||++++.|++.|.. +.++|++|+|+
T Consensus 388 ~gy~~~~~~t~~~f~~~~~~~~~~TGD~ 415 (533)
T PRK07798 388 LGYYKDPEKTAETFPTIDGVRYAIPGDR 415 (533)
T ss_pred ccccCChhhhHHhhccCCCCceEEcCcE
Confidence 9999999999998821 22358877764
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=364.54 Aligned_cols=349 Identities=22% Similarity=0.223 Sum_probs=275.3
Q ss_pred eHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECc
Q 009160 108 TYGQAFETICNFASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGS 186 (541)
Q Consensus 108 Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 186 (541)
||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++.|++++|+++.++.+++.++++.+++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHhhcCCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCcc
Q 009160 187 KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPK 266 (541)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK 266 (541)
.....+..... .++..+.. +..................++++++++|||||||.||
T Consensus 81 ~~~~~~~~~~~------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK 136 (408)
T TIGR01733 81 ALASRLAGLVL------PIILVDPL------------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK 136 (408)
T ss_pred chhhhccccCC------ceEEechh------------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence 76544332110 11111100 0000000000011111245789999999999999999
Q ss_pred EEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccc
Q 009160 267 GVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346 (541)
Q Consensus 267 gV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~ 346 (541)
+|.++|++++..+......+ .+.++|++++.+|++|.+++...+.++..|+++++.+..... . ...+...++++
T Consensus 137 ~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~-~----~~~~~~~~~~~ 210 (408)
T TIGR01733 137 GVVVTHRSLVNLLAWLARRY-GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEER-D----AALLAALIAEH 210 (408)
T ss_pred EEEeccHHHHHHHHHHHHhc-CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhcc-C----HHHHHHHHHHc
Confidence 99999999999999888877 888999999999999999998899999999999883332221 0 11122238889
Q ss_pred cceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEE
Q 009160 347 RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426 (541)
Q Consensus 347 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~ 426 (541)
++|.+.++|.+++.+.+... ...+++|.++
T Consensus 211 ~~t~l~~~p~~~~~l~~~~~--------------------------------------------------~~~~~l~~v~ 240 (408)
T TIGR01733 211 PVTVLNLTPSLLALLAAALP--------------------------------------------------PALASLRLVI 240 (408)
T ss_pred CceEEEeCHHHHHHHHHhhh--------------------------------------------------hcccCceEEE
Confidence 99999999999999877432 0113899999
Q ss_pred EccCCCCHHHHHHHHHHhC-CcceeccCcccccccccccCCCCC-----CCCCcCCCcCCeEEEEEecCCCCccCCCCCC
Q 009160 427 SGGAPLSADTQRFINICLG-APIGQGYGLTETCAGGTFSEVDDS-----SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPM 500 (541)
Q Consensus 427 ~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~~-----~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g 500 (541)
+||+++++++.+++++.++ +.+++.||+||++..++....... +..++|+|+++++++|+| ++++.+ +.|
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~---~~g 316 (408)
T TIGR01733 241 LGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRPV---PVG 316 (408)
T ss_pred EeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCCC---CCC
Confidence 9999999999999999997 899999999999887753322211 267899999999999999 556554 478
Q ss_pred CccEEEEccCCcccccCCCchhhHhhhc----cCCCc--eEEcccc
Q 009160 501 PRGEIVIAGPNVTVGYFKNEEKTKEVYK----VMLDR--FMLMVAL 540 (541)
Q Consensus 501 ~~GEi~v~g~~v~~GY~~~~~~t~~~f~----~d~dG--w~~~~~~ 540 (541)
+.|||+|+|++++.||+++++.|++.|. ...+| ||+|+|+
T Consensus 317 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl 362 (408)
T TIGR01733 317 VVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDL 362 (408)
T ss_pred CceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCce
Confidence 8999999999999999999999998871 11123 8888874
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=371.12 Aligned_cols=336 Identities=23% Similarity=0.265 Sum_probs=274.3
Q ss_pred CHHHHH-HHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 59 TLAELF-EQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 59 tl~~~~-~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
++.+.. .++++++|+++|+.+ +++ .+||.||.++++++|..|.+.|+++|++|+++
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~------------~~~-----------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~ 59 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRL------------NDE-----------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALR 59 (458)
T ss_pred hhhcChHHHHHHhCCCceeeec------------CCc-----------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence 344444 566899999999975 443 69999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++++++++||+++|++++|+++..+++++..+++++++++++++++... +..+ ...
T Consensus 60 ~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~-------~~~------------ 119 (458)
T PRK09029 60 GKNSPETLLAYLALLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSAL-------TSL------------ 119 (458)
T ss_pred cCCCHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc-------ccc------------
Confidence 99999999999999999999999999999999999999999999999876422 1110 000
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
. .. ......+....++++++++|||||||.||||+++|++++..+......+ .+.++|+++.
T Consensus 120 --------~---~~------~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~ 181 (458)
T PRK09029 120 --------H---LQ------LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-PFTAQDSWLL 181 (458)
T ss_pred --------c---cc------cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-CCCccceEEE
Confidence 0 00 0001112345678999999999999999999999999999988887777 7889999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhH
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK 377 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 377 (541)
.+|++|.+++...+.++..|+++++.+...+.+. + .++|.+..+|+++.++......
T Consensus 182 ~~p~~h~~g~~~~~~~l~~G~~v~~~~~~~~~~~-----------i--~~~t~~~~~P~~~~~l~~~~~~---------- 238 (458)
T PRK09029 182 SLPLFHVSGQGIVWRWLYAGATLVVRDKQPLEQA-----------L--AGCTHASLVPTQLWRLLDNRSE---------- 238 (458)
T ss_pred ecCcHhhhhhHHHHHHHhCCceEEeCChHHHHHH-----------H--hhceeeecChHHHHHHHhcccc----------
Confidence 9999999998777788999999998665555544 5 3789999999999887653210
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccc
Q 009160 378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET 457 (541)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~ 457 (541)
..++|.+++||+++++++.++++.. |+++++.||+||+
T Consensus 239 -----------------------------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~ 276 (458)
T PRK09029 239 -----------------------------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEM 276 (458)
T ss_pred -----------------------------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEecccccccc
Confidence 0279999999999999999998865 9999999999999
Q ss_pred cccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEc
Q 009160 458 CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLM 537 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~ 537 (541)
+...+....+ ...++|+|+++++++|++ |||+|+|++++.||+++++.+... +.+|||+|
T Consensus 277 ~~~~~~~~~~--~~~~~G~~~~~~~~~i~~---------------gel~v~g~~~~~gY~~~~~~~~~~---~~~~~~~T 336 (458)
T PRK09029 277 ASTVCAKRAD--GLAGVGSPLPGREVKLVD---------------GEIWLRGASLALGYWRQGQLVPLV---NDEGWFAT 336 (458)
T ss_pred CcceeccCCC--CCCCCCCCCCCCEEEEeC---------------CEEEEecCceeeeeecCccccccc---cCCCccCC
Confidence 8755443322 235799999999999986 899999999999999999888643 46788888
Q ss_pred ccc
Q 009160 538 VAL 540 (541)
Q Consensus 538 ~~~ 540 (541)
+|+
T Consensus 337 GD~ 339 (458)
T PRK09029 337 RDR 339 (458)
T ss_pred CCc
Confidence 774
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=378.65 Aligned_cols=380 Identities=23% Similarity=0.312 Sum_probs=286.2
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+.++.+.+...++..|+..++... ++. +.+||.||.++++++|++|.+.|+++||+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----------~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l 59 (545)
T PRK07768 1 MSRFTEKMYANARTSPRGMVTGEP-----------DAP----------VRHTWGEVHERARRIAGGLAAAGVGPGDAVAV 59 (545)
T ss_pred CchHHHHHHHHhhCCCcceEEecC-----------CCc----------eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 356889888999999999988642 332 47999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHH-------HHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEec
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEAL-------CYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMD 209 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~ 209 (541)
+++|+++|+++++||+++|++++++++..+.+++ .++++.++++.+++++.....+.....
T Consensus 60 ~~~~~~~~~~~~la~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------ 127 (545)
T PRK07768 60 LAGAPVEIAPTAQGLWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEE------------ 127 (545)
T ss_pred ECCCchHHHHHHHHHHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcc------------
Confidence 9999999999999999999999999998876544 556777899999998765433322110
Q ss_pred CCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
..+....++++..... ..+....++++++|+|||||||.||||+++|+++...+......+ ++
T Consensus 128 -------------~~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~ 190 (545)
T PRK07768 128 -------------KGIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-EF 190 (545)
T ss_pred -------------cCCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-CC
Confidence 0122344555543221 123345679999999999999999999999999999888777777 67
Q ss_pred CCC-cEEEEccChHHHHHHHH-HHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 290 GSK-DVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 290 ~~~-d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
..+ |++++.+|++|.+++.. +..++..|+++++..+..+... +..+...++++++|++..+|.++..+.+....
T Consensus 191 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~ 266 (545)
T PRK07768 191 DVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRD----PLLWAELISKYRGTMTAAPNFAYALLARRLRR 266 (545)
T ss_pred CCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHh----HHHHHHHHHHhCCEEEECchHHHHHHHHHHhc
Confidence 766 89999999999999876 5567999999887544322211 11122239999999998888887766543321
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH---h
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC---L 444 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~---~ 444 (541)
..... ....+++|.+++||+++++++.+++.+. +
T Consensus 267 ~~~~~-------------------------------------------~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~ 303 (545)
T PRK07768 267 QAKPG-------------------------------------------AFDLSSLRFALNGAEPIDPADVEDLLDAGARF 303 (545)
T ss_pred ccccc-------------------------------------------CCCchheeeEEeccCCCCHHHHHHHHHHHHhc
Confidence 11000 0011389999999999999999988874 4
Q ss_pred CC---cceeccCcccccccccccCCC--------------------------CCCCCCcCCCcCCeEEEEEecCCCCccC
Q 009160 445 GA---PIGQGYGLTETCAGGTFSEVD--------------------------DSSVGRVGAPLPCSFIKLIDWPEGGYLT 495 (541)
Q Consensus 445 g~---~v~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~vG~p~~~~ev~ivd~~~~~~~~ 495 (541)
|. .+++.||+||++..++..... ....+++|+|+++++++|+| ++++..
T Consensus 304 g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~- 381 (545)
T PRK07768 304 GLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVL- 381 (545)
T ss_pred CCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCC-
Confidence 55 499999999998765433221 11346899999999999999 777665
Q ss_pred CCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 496 SDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 496 ~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+.++.|||+|+|+.++.||++++... +.+ +.+|||+|+|+
T Consensus 382 --~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~--~~~g~~~TGDl 421 (545)
T PRK07768 382 --PPRGVGVIELRGESVTPGYLTMDGFI-PAQ--DADGWLDTGDL 421 (545)
T ss_pred --CCCCEEEEEEccCcccccccCCCCCc-ccc--cCCCeeeccce
Confidence 47889999999999999999865443 333 56778877774
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=371.51 Aligned_cols=355 Identities=19% Similarity=0.237 Sum_probs=281.8
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEEC
Q 009160 106 WLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG 185 (541)
Q Consensus 106 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 185 (541)
.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++.++++++++++++++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhcCCC-CccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCC
Q 009160 186 SKELKKLVDLSGQLD-TVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264 (541)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 264 (541)
+...+.+.+...... ....++..+... .....+++..... + .......++.++++|||||||.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~---~-~~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 91 AALADTAAELAAELPAGVPLLLVVAGPV------------PGFRSYEEALAAQ---P-DTPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred cchhhHHHHHhhhccccccEEEEeCCCC------------CccccHHHHHhcC---C-CCCCCCCCcceEEEECCCCCCC
Confidence 887766655544443 445555443211 1122344443321 1 1122355778999999999999
Q ss_pred ccEEEechHHHHHHHH------HHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhh
Q 009160 265 PKGVMMTHGNVLATVS------AVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKI 335 (541)
Q Consensus 265 PKgV~~th~~l~~~~~------~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~ 335 (541)
||||+++|.++..... ...... ....++++++.+|++|.+++...+.++..|+++.+ +++..+++.
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---- 229 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALAL---- 229 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHH----
Confidence 9999999887654321 111112 23578899999999999998887889999999988 456666666
Q ss_pred hcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHH
Q 009160 336 KKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVR 415 (541)
Q Consensus 336 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (541)
++++++|++.++|+++..+.+........
T Consensus 230 -------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------------------------------- 258 (502)
T PRK08276 230 -------IERYRVTHSQLVPTMFVRMLKLPEEVRAR-------------------------------------------- 258 (502)
T ss_pred -------HHHhCCeEEEehHHHHHHHHhCccccCCC--------------------------------------------
Confidence 99999999999999998887532110000
Q ss_pred HHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCcc
Q 009160 416 AILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYL 494 (541)
Q Consensus 416 ~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~ 494 (541)
...+++|.+++||++++.++.+++++.+|..+++.||+||++++++..... ....+++|+|+ +++++|+| ++++.+
T Consensus 259 -~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~ 335 (502)
T PRK08276 259 -YDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNEL 335 (502)
T ss_pred -CCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCC
Confidence 001389999999999999999999999999999999999998765543322 23458899999 88999999 666654
Q ss_pred CCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 495 TSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 495 ~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+.|+.|||+++|++++.||+++++.+.+.| .+||||+|+|+
T Consensus 336 ---~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~--~~~~~~~TGD~ 376 (502)
T PRK08276 336 ---PPGEIGTVYFEMDGYPFEYHNDPEKTAAAR--NPHGWVTVGDV 376 (502)
T ss_pred ---cCCCceEEEEECCCccchhcCCHHHHHHHh--cCCCceeecce
Confidence 478899999999999999999999999999 67799998875
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=364.44 Aligned_cols=365 Identities=22% Similarity=0.196 Sum_probs=276.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEE
Q 009160 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC 184 (541)
Q Consensus 105 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 184 (541)
+.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++.++.+++.++++.++++++++
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHHHHhhcCCCCccEEEEecCCCcccc----ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccC
Q 009160 185 GSKELKKLVDLSGQLDTVKHVICMDANIPSAV----SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSG 260 (541)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG 260 (541)
+.+..+.+.+.. +....++..+....... ............+++++..... ......++++++++||||
T Consensus 90 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSG 162 (509)
T PRK12406 90 HADLLHGLASAL---PAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTSG 162 (509)
T ss_pred ccchhhhhhhhh---hcccceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECCC
Confidence 987765544322 11122222221110000 0000000112234555432211 112345789999999999
Q ss_pred CCCCccEEEechHHHH---HHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchh
Q 009160 261 STGLPKGVMMTHGNVL---ATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSK 334 (541)
Q Consensus 261 TTG~PKgV~~th~~l~---~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~ 334 (541)
|||.||||+++|.+.. .........+ ++.++|++++.+|++|..+....+.++..|+++++ .++..+.+.
T Consensus 163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--- 238 (509)
T PRK12406 163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQL--- 238 (509)
T ss_pred CCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHH---
Confidence 9999999999766543 3333334455 78899999999999999888777778889999888 445555555
Q ss_pred hhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHH
Q 009160 335 IKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKV 414 (541)
Q Consensus 335 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (541)
++++++|+++++|.++..+.+.......
T Consensus 239 --------l~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------------------------------- 266 (509)
T PRK12406 239 --------IERHRITHMHMVPTMFIRLLKLPEEVRA-------------------------------------------- 266 (509)
T ss_pred --------HHHcCCeEEEccHHHHHHHHhCchhhcc--------------------------------------------
Confidence 9999999999999999888753211000
Q ss_pred HHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCc
Q 009160 415 RAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGY 493 (541)
Q Consensus 415 ~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~ 493 (541)
....+++|.+++||+++++++.+++.+.+++.+++.||+||++.+++....+ ..+++++|.|+++++++|+| ++++.
T Consensus 267 -~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~ 344 (509)
T PRK12406 267 -KYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRP 344 (509)
T ss_pred -cCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCC
Confidence 0011389999999999999999999999999999999999998765543222 23568999999999999999 66665
Q ss_pred cCCCCCCCccEEEEccCCccc-ccCCCchhhHhhhccCCCceEEcccc
Q 009160 494 LTSDSPMPRGEIVIAGPNVTV-GYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 494 ~~~~~~g~~GEi~v~g~~v~~-GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+ +.|+.|||+++|+.++. ||+++++.++..+ .||||+|+|+
T Consensus 345 ~---~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~---~~~~~~TGD~ 386 (509)
T PRK12406 345 L---PQGEIGEIYSRIAGNPDFTYHNKPEKRAEID---RGGFITSGDV 386 (509)
T ss_pred C---CCCCceEEEEECCccccccccCCchhccccc---CCCCeEEccE
Confidence 4 47889999999999875 9999999887654 6788888774
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=338.47 Aligned_cols=390 Identities=21% Similarity=0.200 Sum_probs=300.5
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...|++++|..+++++|+++|+++.+ ..+.+||+|++++++++|+.|+.+|++.||.||
T Consensus 75 ~~~ti~~~F~~~vrr~p~k~aii~~~---------------------~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VA 133 (649)
T KOG1179|consen 75 ERRTIAELFLSQVRRQPDKPAIIYEG---------------------PFQSLTFAELDARSNRVANYLHAEGLKAGDVVA 133 (649)
T ss_pred cCCcHHHHHHHHHHhCCCccEEEEeC---------------------CCceeeHHHHHHHHHHHHHHHHHhhcccCCEEE
Confidence 34789999999999999999999842 123799999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCc-cEEEEecCCCcc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV-KHVICMDANIPS 214 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~ 214 (541)
++|+|++|++..+++..++|.+..-||+++..+.+.|.++.++++++|++.+..+.+.++.+.+... -.+...+.....
T Consensus 134 L~men~pefv~lWlGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~ 213 (649)
T KOG1179|consen 134 LLMENRPEFVALWLGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP 213 (649)
T ss_pred EecCCChhHHHHHHhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999988887774333222 122222211110
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCC---CCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCC
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVD---ADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (541)
..+.++....+.....+.+ .....-.++++.+|||||||.||+++++|.-.......+...+ ++++
T Consensus 214 ----------~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~~ 282 (649)
T KOG1179|consen 214 ----------DGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMTA 282 (649)
T ss_pred ----------chHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCCc
Confidence 1111222222222222322 2345567899999999999999999999999999888788888 9999
Q ss_pred CcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
+|++...+||+|..+.+. +..++..|+++++ ++..+++++ ..++++|+.-.+-.+.+.+..+...
T Consensus 283 ~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~D-----------C~k~~~Tv~QYIGElcRYLl~~p~~ 351 (649)
T KOG1179|consen 283 DDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDD-----------CRKYNVTVIQYIGELCRYLLNQPPS 351 (649)
T ss_pred cceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHH-----------HHHhCCeeeehHHHHHHHHHcCCCC
Confidence 999999999999988777 7889999999999 999999999 9999999999999999998875433
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCc
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAP 447 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~ 447 (541)
+.+.. +++|..+ |.-+.+++++.|.++||..
T Consensus 352 ~~er~-----------------------------------------------HkVRla~--GNGLR~diW~~Fv~RFg~~ 382 (649)
T KOG1179|consen 352 PEERQ-----------------------------------------------HKVRLAY--GNGLRPDIWQQFVKRFGII 382 (649)
T ss_pred hhhcC-----------------------------------------------ceEEEEe--cCCCCchHHHHHHHHcCCC
Confidence 22211 3788887 8889999999999999876
Q ss_pred -ceeccCcccccccccccCCCCCCCCCcCCCc------CCeEEEEEecCCCCcc-------CCCCCCCccEEEE--ccCC
Q 009160 448 -IGQGYGLTETCAGGTFSEVDDSSVGRVGAPL------PCSFIKLIDWPEGGYL-------TSDSPMPRGEIVI--AGPN 511 (541)
Q Consensus 448 -v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~------~~~ev~ivd~~~~~~~-------~~~~~g~~GEi~v--~g~~ 511 (541)
|.+.||+||...... + .+.+.|.+|.-. --+++-=+|+.+|+.+ .++++|+.|.+.- .-..
T Consensus 383 ~IgE~YgaTEgn~~~~-N--~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~ 459 (649)
T KOG1179|consen 383 KIGEFYGATEGNSNLV-N--YDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKN 459 (649)
T ss_pred eEEEEeccccCcceee-e--ecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCC
Confidence 999999999755432 2 245566666521 1112211243444433 3467889996532 2334
Q ss_pred c---ccccCCCchhhHhhh------------------ccCCCceEEcccc
Q 009160 512 V---TVGYFKNEEKTKEVY------------------KVMLDRFMLMVAL 540 (541)
Q Consensus 512 v---~~GY~~~~~~t~~~f------------------~~d~dGw~~~~~~ 540 (541)
. |.||.++.++|+++. ..|+.||+|+.||
T Consensus 460 P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DR 509 (649)
T KOG1179|consen 460 PLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDR 509 (649)
T ss_pred chhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEecc
Confidence 4 999999888888765 5577777777776
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=360.51 Aligned_cols=318 Identities=17% Similarity=0.158 Sum_probs=248.9
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEE
Q 009160 106 WLTYGQAFETICNFASGLAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC 184 (541)
Q Consensus 106 ~~Ty~el~~~~~~la~~L~~~gv-~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 184 (541)
-+.|+||.++++++|++|.+.|+ .+|++|+++++|+++++++++||+++|++++|+++.++++++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 37899999999999999999988 57999999999999999999999999999999999999999999999999999998
Q ss_pred CccchhHHHHhhcCCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCC
Q 009160 185 GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264 (541)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~ 264 (541)
+.+..... .+.. .. ......++++++++|||||||.
T Consensus 99 ~~~~~~~~---------------~~~~----------------------------~~-~~~~~~~~~~~~i~~TSGTTG~ 134 (452)
T PRK07445 99 LDQLKLSH---------------PPPL----------------------------PS-QGILPNLETGWIMIPTGGSSGQ 134 (452)
T ss_pred cCcccccc---------------CCCC----------------------------Cc-cccCCCCCCcEEEEeCCCCCCC
Confidence 76532100 0000 00 0012356899999999999999
Q ss_pred ccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccc
Q 009160 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDAS 344 (541)
Q Consensus 265 PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~ 344 (541)
||||++||+++++.+......+ .+.+ ++.++.+|++|.+++...+.++..|+++++.+...+.+. .....
T Consensus 135 PKgV~~t~~~l~~~~~~~~~~~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~--------~~~~~ 204 (452)
T PRK07445 135 IRFAIHTWETLTASVQGFQRYF-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSG--------QELPP 204 (452)
T ss_pred CcEEEechHHHHHHHHHHHHHh-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccch--------hhhhh
Confidence 9999999999998888777666 5544 467889999999999888889999999988543222211 00144
Q ss_pred cccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEE
Q 009160 345 VLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRF 424 (541)
Q Consensus 345 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~ 424 (541)
.+++|+++++|+++..+.+.... ..+++|.
T Consensus 205 ~~~~t~~~~vP~~l~~l~~~~~~--------------------------------------------------~l~~l~~ 234 (452)
T PRK07445 205 NPSDFFLSLVPTQLQRLLQLRPQ--------------------------------------------------WLAQFRT 234 (452)
T ss_pred hcCceEEEehHHHHHHHHhhChh--------------------------------------------------hhhcceE
Confidence 67899999999999988652100 0128999
Q ss_pred EEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCC--CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCc
Q 009160 425 ILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR 502 (541)
Q Consensus 425 i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~ 502 (541)
+++||+++++++.+.++. +++++++.||+||++..++...+.+ ...+++|+|+|+++++|++ ++.
T Consensus 235 i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~------------g~~ 301 (452)
T PRK07445 235 ILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA------------NQT 301 (452)
T ss_pred EEECCccCCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC------------CCc
Confidence 999999999999998876 4899999999999876554433332 2457899999999999972 357
Q ss_pred cEEEEccCCcccccCCCchh------hHhhhccCCCceEEcccc
Q 009160 503 GEIVIAGPNVTVGYFKNEEK------TKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 503 GEi~v~g~~v~~GY~~~~~~------t~~~f~~d~dGw~~~~~~ 540 (541)
|||+|+|++++.||++++.. |.+..+.|+||++++.||
T Consensus 302 Gel~v~g~~~~~gY~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR 345 (452)
T PRK07445 302 GNITIQAQSLALGYYPQILDSQGIFETDDLGYLDAQGYLHILGR 345 (452)
T ss_pred ceEEEeCCccchhhcCCccCCCCEEECCCEEEEcCCCCEEEEee
Confidence 99999999999999986532 222224466666666665
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=386.35 Aligned_cols=359 Identities=18% Similarity=0.211 Sum_probs=260.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
....++.++|+++++++|+++|+.+ +++ .+||+||.++++++|++|.+.|+++|++|
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~------------~~~-----------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~V 500 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLF------------DGR-----------VHTYEAVNRRINNVVRGLIAVGVRQGDRV 500 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEe------------CCc-----------eeeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3446899999999999999999986 444 69999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+|+++|+++|+++++||+++|++++|++|. +++.++++.++++++|++.+..+.+.+. ...+++++.....
T Consensus 501 aI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~------~~~iiv~~~~~~~ 571 (994)
T PRK07868 501 GVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL------PGRVLVLGGGESR 571 (994)
T ss_pred EEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc------CceEEEecCCccc
Confidence 999999999999999999999999999985 6899999999999999997766554331 2445555432111
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCC--CCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCC
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENP--VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 292 (541)
... .. ......+++++.......+ ..+....++|+++|+|| ||||.||++.++|.+...........+ .++.+
T Consensus 572 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-~l~~~ 646 (994)
T PRK07868 572 DLD-LP--DDADVIDMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-ALDRR 646 (994)
T ss_pred ccc-CC--cchhhhhhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-CCCCC
Confidence 000 00 0000111221111000000 01122246899999999 688888888888877665555444556 78899
Q ss_pred cEEEEccChHHHHHHHHHHHH-hhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHh
Q 009160 293 DVYLAYLPLAHVLELVAENLI-AGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~-l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 368 (541)
|++++.+|++|++++...+.+ +..|+++++ +++..+++. ++++++|+++++|+++..+.+.....
T Consensus 647 d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~-----------I~~~~vT~~~~~Ps~l~~L~~~~~~~ 715 (994)
T PRK07868 647 DTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQE-----------VRQYGVTVVSYTWAMLREVVDDPAFV 715 (994)
T ss_pred CeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHH-----------HHHhCCcEEEeHHHHHHHHHhCcCCc
Confidence 999999999999999875554 555555655 566677777 99999999999999999887631100
Q ss_pred hhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhC-Cc
Q 009160 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG-AP 447 (541)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g-~~ 447 (541)
.. ..+++|.++ |+.+++++.+.+.+.++ ++
T Consensus 716 ~~-----------------------------------------------~~~slr~~~--g~gl~~~l~~~~~~~~~~~~ 746 (994)
T PRK07868 716 LH-----------------------------------------------GNHPVRLFI--GSGMPTGLWERVVEAFAPAH 746 (994)
T ss_pred cC-----------------------------------------------CCCceEEEe--cCCCCHHHHHHHHHHhCchh
Confidence 00 013789876 34599999999999886 89
Q ss_pred ceeccCcccccccccccCCCCCCCCCcCCCcCCe-EEEEE--ec-------CCCCccCCCCCCCccEEEEccCCc
Q 009160 448 IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCS-FIKLI--DW-------PEGGYLTSDSPMPRGEIVIAGPNV 512 (541)
Q Consensus 448 v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-ev~iv--d~-------~~~~~~~~~~~g~~GEi~v~g~~v 512 (541)
++|.||+||++.... . ....+.+++|+|+|++ +++|. |+ ++.++....+.|+.|||+++|+..
T Consensus 747 l~~~YG~TE~~~~~~-~-~~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~ 819 (994)
T PRK07868 747 VVEFFATTDGQAVLA-N-VSGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP 819 (994)
T ss_pred eeeeeeccccccccc-c-cCCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC
Confidence 999999999875433 2 2334668999999998 77775 21 111222224578999999999853
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=352.65 Aligned_cols=325 Identities=24% Similarity=0.293 Sum_probs=261.6
Q ss_pred eHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 108 Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++||+++|++++|+++..+.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhHHHHhhcCCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccE
Q 009160 188 ELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKG 267 (541)
Q Consensus 188 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKg 267 (541)
..... + ....+.++................+++++++|||||||.||+
T Consensus 81 ~~~~~-------------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 81 LEEKD-------------F-------------------QADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred ccccc-------------e-------------------eecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 32100 0 000111111111111111233456889999999999999999
Q ss_pred EEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcc-cccccchhhhcCcccccccc
Q 009160 268 VMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPL-TLTDTSSKIKKGTQGDASVL 346 (541)
Q Consensus 268 V~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~-~l~~~~~~~~~~~~~~i~~~ 346 (541)
|+++|+++...+......+ +++++|++++.+|++|+.++...+.++..|+++++.++. .+++. ++++
T Consensus 129 v~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~-----------l~~~ 196 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKENL-GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLLEM-----------IANE 196 (436)
T ss_pred EEEehHHHHHHHHHHHhhc-CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHHHHHHH-----------HHHh
Confidence 9999999999988888888 899999999999999999998788899999999985432 34444 9999
Q ss_pred cceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEE
Q 009160 347 RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426 (541)
Q Consensus 347 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~ 426 (541)
++|++.++|+++..+.+..... .++|.++
T Consensus 197 ~~t~~~~~P~~l~~l~~~~~~~---------------------------------------------------~~l~~~~ 225 (436)
T TIGR01923 197 RVTHISLVPTQLNRLLDEGGHN---------------------------------------------------ENLRKIL 225 (436)
T ss_pred CCeEEEeHHHHHHHHHhCcCCC---------------------------------------------------CceEEEE
Confidence 9999999999998886531100 2899999
Q ss_pred EccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEE
Q 009160 427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEI 505 (541)
Q Consensus 427 ~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi 505 (541)
+||+++++++.++++.. |+.+++.||+||++...+...... ....++|.|+++++++|.+.+. ++.|||
T Consensus 226 ~~G~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~---------~~~Gel 295 (436)
T TIGR01923 226 LGGSAIPAPLIEEAQQY-GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNK---------EGHGEI 295 (436)
T ss_pred ECCCCCCHHHHHHHHHh-CCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCC---------CCceEE
Confidence 99999999999988764 999999999999987655443322 2223599999999999944121 257999
Q ss_pred EEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 506 VIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 506 ~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+|+|+.++.||+++++.+...+ .+|||+|+|+
T Consensus 296 ~v~~~~~~~gy~~~~~~~~~~~---~~~~~~TGD~ 327 (436)
T TIGR01923 296 MVKGANLMKGYLYQGELTPAFE---QQGWFNTGDI 327 (436)
T ss_pred EEECCccchhhCCChhhhhhhh---cCCCeeccce
Confidence 9999999999999888887655 5677777764
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=360.92 Aligned_cols=318 Identities=18% Similarity=0.151 Sum_probs=229.0
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc------hhHHHHhhcCCCCccEEEEecCC
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE------LKKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++.. .+.+.++..... .+.++..+..
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 79 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAP-AKAIVLPAAG 79 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhccc-ceEEEEeccC
Confidence 589999999999999999999999999999999999999999999998642 122222221111 2233332111
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCC------CCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhh
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGREN------PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~ 285 (541)
..... . ......+++++....... ...+....++|+++|+|||||||.||||++||+|++..+......
T Consensus 80 ~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~ 154 (499)
T PLN03051 80 EPVAV---P--LREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH 154 (499)
T ss_pred cccCC---c--cccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence 10000 0 000123466655322110 111122356899999999999999999999999988776655555
Q ss_pred CCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeC----CcccccccchhhhcCcccccccccceEEeecHHHHHHH
Q 009160 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRV 361 (541)
Q Consensus 286 ~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 361 (541)
+ +++.+|++++.+|++|.+++..++.++..|+++++. ++..+++. ++++++|+++++|+++..+
T Consensus 155 ~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~-----------i~~~~vt~~~~vP~~~~~l 222 (499)
T PLN03051 155 M-DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKF-----------VQDAGVTVLGLVPSIVKAW 222 (499)
T ss_pred c-CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHH-----------HHHhCCcEEEeCHHHHHHH
Confidence 6 788899999999999999987778889999999873 34455565 9999999999999999988
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHH
Q 009160 362 RDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN 441 (541)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~ 441 (541)
.+....... ....++||.+++||+++++++.++++
T Consensus 223 ~~~~~~~~~---------------------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~ 257 (499)
T PLN03051 223 RHTGAFAME---------------------------------------------GLDWSKLRVFASTGEASAVDDVLWLS 257 (499)
T ss_pred HhcCccccc---------------------------------------------cCCchhheEEEecCCCCCHHHHHHHH
Confidence 653110000 00013899999999999999998887
Q ss_pred HHh--CCcceeccCcccccccccccCC-CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCc--cccc
Q 009160 442 ICL--GAPIGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV--TVGY 516 (541)
Q Consensus 442 ~~~--g~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v--~~GY 516 (541)
+.+ ++++++.||+||++...+.... ...+.+++|+|.++++++|+| ++|+.++ .+.++.|||+|+|+.+ +.||
T Consensus 258 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~-~g~~~~Gel~v~g~~~~~~~gy 335 (499)
T PLN03051 258 SVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYP-DDQPCVGEVALAPPMLGASDRL 335 (499)
T ss_pred HhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCC-CCCCcceEEEEecCcCCCCccc
Confidence 743 4889999999998654332222 233568999999999999999 7777654 2222589999999977 5899
Q ss_pred CCCc
Q 009160 517 FKNE 520 (541)
Q Consensus 517 ~~~~ 520 (541)
|+++
T Consensus 336 ~~~~ 339 (499)
T PLN03051 336 LNAD 339 (499)
T ss_pred cCCc
Confidence 9865
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=336.70 Aligned_cols=388 Identities=21% Similarity=0.243 Sum_probs=300.9
Q ss_pred HHHHHHHHHH-cCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeC
Q 009160 61 AELFEQSCKE-HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFAD 139 (541)
Q Consensus 61 ~~~~~~~a~~-~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ 139 (541)
...+.+..+. -++.+++.++.. ++ ++...+||.|+.+++.++|..|...|+++||+|++++|
T Consensus 67 ~n~~~~~~~~~~~~~~a~~~~~~---------~~--------~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mP 129 (626)
T KOG1175|consen 67 YNCLDRHIKEKGGDKVAIIFEGN---------EG--------GDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMP 129 (626)
T ss_pred HhhhhhhhhhcCCCCcEEEEEec---------CC--------CceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEecc
Confidence 4444555444 488889887531 22 23345999999999999999999889999999999999
Q ss_pred CcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHH---------hhcCCCC-----ccEE
Q 009160 140 TRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVD---------LSGQLDT-----VKHV 205 (541)
Q Consensus 140 ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~---------~~~~~~~-----~~~i 205 (541)
+.+|++++++||.+.|++.+++-...++.++...++.++++++++.+......+. .....+. ...+
T Consensus 130 m~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~ 209 (626)
T KOG1175|consen 130 MIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDL 209 (626)
T ss_pred CChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceee
Confidence 9999999999999999999999999999999999999999999998754422111 1111110 1111
Q ss_pred EEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHH-HHHHHh
Q 009160 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT-VSAVMT 284 (541)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~ 284 (541)
++.+ ..+...|+++..... ...++...+.+|+.+|+|||||||.|||+.+++..-.-. +.....
T Consensus 210 ~~~~--------------~~~d~~~~~~~~~a~-~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~ 274 (626)
T KOG1175|consen 210 IVSR--------------RNRDLFWSLELKKAS-PEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRY 274 (626)
T ss_pred EEec--------------ccccccHHHHhhhcC-CCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcce
Confidence 1100 011234555443332 233367888899999999999999999999988765544 444445
Q ss_pred hCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-----CCcccccccchhhhcCcccccccccceEEeecHHHH
Q 009160 285 IVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAIL 358 (541)
Q Consensus 285 ~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~ 358 (541)
.+ ++++.|++.++..+.++.+-+. .+.+|+.|+++++ +++..+++. +.++++|+++..|+.+
T Consensus 275 ~~-d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~-----------v~k~~it~l~t~pt~~ 342 (626)
T KOG1175|consen 275 HF-DLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKI-----------LDKYKVTVLYTAPTAY 342 (626)
T ss_pred ec-cCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhh-----------HhhcceEEEEeccHHH
Confidence 56 8999999999999999999888 5669999999988 356666776 9999999999999999
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHH
Q 009160 359 DRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQR 438 (541)
Q Consensus 359 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~ 438 (541)
+.+.+...+.....+ + .+||.+.++|+|+.++..+
T Consensus 343 r~l~~~~~~~~~~~~-------------------------------~--------------~sLk~~~S~Gepi~~~~~e 377 (626)
T KOG1175|consen 343 RLLRRLGQEDVTSYS-------------------------------L--------------KSLRTCGSVGEPINPEAWE 377 (626)
T ss_pred HHHHHhccccccccc-------------------------------c--------------ceEEEEeecCccCCcchHH
Confidence 988764332211100 0 1799999999999999999
Q ss_pred HHHHHhCC-cceeccCcccccccccccCCCC--CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC---Cc
Q 009160 439 FINICLGA-PIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NV 512 (541)
Q Consensus 439 ~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~--~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~---~v 512 (541)
++.+.++. +|++.||+||+++.+....+.. .++++.|.|.+++.+.|+| ++|+.+++. ++.|||+++.+ +.
T Consensus 378 w~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~--~~~G~l~~~~~~P~~~ 454 (626)
T KOG1175|consen 378 WWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPS--TGNGELRLKPPWPPGM 454 (626)
T ss_pred HHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCC--CceeEEEEeCCCCccc
Confidence 99999987 6999999999999887766655 7789999999999999999 688887622 17899999873 77
Q ss_pred ccccCCCchhhHhhh--------------ccCCCceEEcccc
Q 009160 513 TVGYFKNEEKTKEVY--------------KVMLDRFMLMVAL 540 (541)
Q Consensus 513 ~~GY~~~~~~t~~~f--------------~~d~dGw~~~~~~ 540 (541)
+++||+|++.-.+++ ++|+||+++++||
T Consensus 455 ~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR 496 (626)
T KOG1175|consen 455 FRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGR 496 (626)
T ss_pred cccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEec
Confidence 999999999544443 7899999999987
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=330.25 Aligned_cols=302 Identities=14% Similarity=0.097 Sum_probs=251.0
Q ss_pred EeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEEC
Q 009160 106 WLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG 185 (541)
Q Consensus 106 ~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 185 (541)
.+||.||.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++++++++++++
T Consensus 8 ~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~ 86 (414)
T PRK08308 8 EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLYG 86 (414)
T ss_pred eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEec
Confidence 7999999999999999985 689999999999999999999999999999999999999999999999999999999997
Q ss_pred ccchhHHHHhhcCCCCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCc
Q 009160 186 SKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLP 265 (541)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~P 265 (541)
+.... + . ......++++++|+|||||||.|
T Consensus 87 ~~~~~---------------~----------------~-------------------~~~~~~~~~~~~i~~TSGtTG~P 116 (414)
T PRK08308 87 ESDFT---------------K----------------L-------------------EAVNYLAEEPSLLQYSSGTTGEP 116 (414)
T ss_pred Ccccc---------------c----------------c-------------------cCCCCCCCCceEEEECCCCCCCC
Confidence 63100 0 0 00123567899999999999999
Q ss_pred cEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCccc
Q 009160 266 KGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQG 341 (541)
Q Consensus 266 KgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~ 341 (541)
|||+++|+++.+.+......+ ....+|+.+..+|++|.+++.. ++.++..|+++++ .++..+++.
T Consensus 117 Kgv~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~---------- 185 (414)
T PRK08308 117 KLIRRSWTEIDREIEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI---------- 185 (414)
T ss_pred cEEEEehHhHHHHHHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHH----------
Confidence 999999999999888887777 7888999999999999999865 7788999999988 455555555
Q ss_pred ccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCc
Q 009160 342 DASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGR 421 (541)
Q Consensus 342 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 421 (541)
++++++|+++++|.++..+.+.... ..+
T Consensus 186 -l~~~~~t~~~~~P~~~~~l~~~~~~---------------------------------------------------~~~ 213 (414)
T PRK08308 186 -LRNTPQHILYAVPLMLHILGRLLPG---------------------------------------------------TFQ 213 (414)
T ss_pred -HHHhCCeEEEcCHHHHHHHHhcCCc---------------------------------------------------ccc
Confidence 9999999999999999888653110 016
Q ss_pred eEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCC
Q 009160 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP 501 (541)
Q Consensus 422 lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~ 501 (541)
++.+++||+++++++.+++++. +.++++.||+||++.... ..+....+++|+|+|++++++.+ + .+.
T Consensus 214 l~~~~~~G~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~--~~~~~~~~~~G~p~~~~~~~~~~-~---------~~~ 280 (414)
T PRK08308 214 FHAVMTSGTPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSI--CPDMKSHLDLGNPLPHVSVSAGS-D---------ENA 280 (414)
T ss_pred ccEEEEccCCCCHHHHHHHHHh-CChhhhccCccccCCeee--cCCCCCCCccCccCCCeEEEEec-C---------CCC
Confidence 8889999999999999999887 689999999999875443 22234568899999999999975 1 245
Q ss_pred ccEEEEccCCcccccCCCchhhHhhhccCCCceEEccccC
Q 009160 502 RGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVALR 541 (541)
Q Consensus 502 ~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~~ 541 (541)
.|||++++. .|+|. |.+..+.|+||.+++.||.
T Consensus 281 ~gel~v~~~---~~~~~----TGDl~~~~~dg~l~~~GR~ 313 (414)
T PRK08308 281 PEEIVVKMG---DKEIF----TKDLGYKSERGTLHFMGRM 313 (414)
T ss_pred CceEEEEcC---CceEE----CCceEEECCCccEEEeccc
Confidence 699999875 34553 6666566899999998874
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=328.15 Aligned_cols=376 Identities=23% Similarity=0.230 Sum_probs=293.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...++++.|.+.+.+.|++.|+.. .+ ..+||+|+..+++++|+.|.+.|+.+++.|
T Consensus 224 ~~~~~i~~~f~~~a~~~p~~~a~~~------------~~-----------~~lty~el~~~a~~la~~l~~~g~~~~~~V 280 (642)
T COG1020 224 PLRLTIHLLFEEQAATTPDAVALVR------------GG-----------QQLTYAELDARANRLARLLISLGVGPGETV 280 (642)
T ss_pred CccchHHHHHHHHHHhCCCceeEec------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCeE
Confidence 3446899999999999999988875 22 269999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++++.+++++++|++++|+.++|+++.++.+++.++++++++..+++........ ..++. +..+....
T Consensus 281 ~i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~- 351 (642)
T COG1020 281 AILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDD----VGLPG----LALDDALS- 351 (642)
T ss_pred EEEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccc----ccCCc----cccccccc-
Confidence 9999999999999999999999999999999999999999999999999983322100 00110 11111000
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
......+. .....+++.+|++|||||||.||||+++|+++++.+.+....+ .++..|+
T Consensus 352 --------------------~~~~~~~~-~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~ 409 (642)
T COG1020 352 --------------------EIPDTDPI-PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-GLDADDR 409 (642)
T ss_pred --------------------cCCccCcc-cccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-CCCcccE
Confidence 00000011 2334568999999999999999999999999999888888777 8999999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCc
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG 374 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 374 (541)
++...+++++.....++.++..|+++++..+....+... +...+.++++|++..+|.++..+.......... +
T Consensus 410 ~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~-----l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~-~- 482 (642)
T COG1020 410 VLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAA-----LLELLEAQGITVLLLVPLLLRLLLLAALAPDLI-S- 482 (642)
T ss_pred EeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHH-----HHHHHHHcCCEEEEecHHHHHHHHhchhhcccc-C-
Confidence 999999999999999999999999999844433332211 111278899999999999999887641110000 0
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh--CCcceecc
Q 009160 375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL--GAPIGQGY 452 (541)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~--g~~v~~~Y 452 (541)
..+.+|.+++||+.++.++...+.... ...+.|.|
T Consensus 483 -------------------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~y 519 (642)
T COG1020 483 -------------------------------------------PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLY 519 (642)
T ss_pred -------------------------------------------CcccccEEEEcCCCCCHHHHHHHHHhccccceEeecc
Confidence 001489999999999999999887765 46899999
Q ss_pred CcccccccccccCCCCCC--CCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccC
Q 009160 453 GLTETCAGGTFSEVDDSS--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVM 530 (541)
Q Consensus 453 G~TE~~~~~~~~~~~~~~--~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d 530 (541)
|+||++...+........ ..++|+|++|..++|+| ..++. ++.|..||++|.|.++++||+++|+.|.+.|..+
T Consensus 520 gpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~---~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~ 595 (642)
T COG1020 520 GPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRP---LPLGVPGELYIAGLGLALGYLNRPDLTAERFIAL 595 (642)
T ss_pred CccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CCCCc---CCCCCCeeeEECCcchhhhhcCChhhhHHHhhhc
Confidence 999977766554433322 36899999999999999 44544 4588889999999999999999999999999333
Q ss_pred CCceEEcccc
Q 009160 531 LDRFMLMVAL 540 (541)
Q Consensus 531 ~dGw~~~~~~ 540 (541)
.+|.|+|+
T Consensus 596 --~~y~tgD~ 603 (642)
T COG1020 596 --RLYRTGDL 603 (642)
T ss_pred --cCccCCCe
Confidence 46666654
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=236.22 Aligned_cols=203 Identities=26% Similarity=0.369 Sum_probs=161.0
Q ss_pred CCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe---
Q 009160 246 YPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY--- 322 (541)
Q Consensus 246 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~--- 322 (541)
...++|+++|+|||||||.||||+++|+++.+.+......+ ...++++..+|++|++++...+.++..|+++++
T Consensus 31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence 45578999999999999999999999999998877665543 356789999999999999888888999998776
Q ss_pred ---CCcccccccchhhhcCccccccccc--ceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCC
Q 009160 323 ---GTPLTLTDTSSKIKKGTQGDASVLR--PTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFG 397 (541)
Q Consensus 323 ---~~~~~l~~~~~~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 397 (541)
+++..+.+. +++++ .++...+|..+..+....... .
T Consensus 108 ~~~~~~~~~~~~-----------i~~~~~~~~~~~~~p~~l~~~~~~~~~~--------------------~-------- 148 (358)
T PRK07824 108 SAGFDPTALPRA-----------VAELGGGRRYTSLVPMQLAKALDDPAAT--------------------A-------- 148 (358)
T ss_pred CCCcCHHHHHHH-----------HHHhCCCceEEEecHHHHHHHHhCcccc--------------------C--------
Confidence 344455555 77777 556677888776654321000 0
Q ss_pred CCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCC
Q 009160 398 AWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAP 477 (541)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p 477 (541)
...++|.+++||+++++++.+++++. ++++++.||+||++..+. ..|.|
T Consensus 149 --------------------~~~~l~~i~~gG~~l~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~----------~~G~~ 197 (358)
T PRK07824 149 --------------------ALAELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSGGCV----------YDGVP 197 (358)
T ss_pred --------------------CcccceEEEECCCCCCHHHHHHHHhc-CCcEEecccCCccCCCcC----------cCcee
Confidence 01389999999999999999988864 999999999999875432 36899
Q ss_pred cCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 478 ~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+++++++|.| |||+++|+.++.||+++++.+ .| ..+|||+|+|+
T Consensus 198 ~~g~~v~i~~---------------Gei~v~g~~~~~gY~~~~~~~--~~--~~~g~~~TGDl 241 (358)
T PRK07824 198 LDGVRVRVED---------------GRIALGGPTLAKGYRNPVDPD--PF--AEPGWFRTDDL 241 (358)
T ss_pred CCCCEEEecC---------------CEEEEecCccccccCCCcccc--cc--cCCCceecccE
Confidence 9999999844 899999999999999998754 45 67889999884
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=204.69 Aligned_cols=221 Identities=17% Similarity=0.101 Sum_probs=160.8
Q ss_pred HHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeCCcH
Q 009160 64 FEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAIFADTRA 142 (541)
Q Consensus 64 ~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~-~gv~~g~~V~i~~~ns~ 142 (541)
+..+++++|+++|+++.+ ++ .++.+.+||+|+.++++++|+.|.+ .|+++||+|+|+++|++
T Consensus 2 ~~~~~~~~p~~~al~~~~----------~~-------~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~ 64 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYD----------DA-------TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHW 64 (227)
T ss_pred hhhhhhhCCCCcEEEEEc----------CC-------CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence 467788999999997531 11 0112479999999999999999998 69999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccccccc
Q 009160 143 EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQS 222 (541)
Q Consensus 143 e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 222 (541)
+++++++||+++|++++|++ .++++++|++++..+.+. .+ +.++.+............
T Consensus 65 ~~~~~~~a~~~~G~v~vp~n-------------~s~a~~~v~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~-- 122 (227)
T TIGR03089 65 QTAVWLLAAWSTGVEVVLAG-------------DPDADVVVTGPDRLAAAA-----GS--GEVVALSLDPLGRRVAGE-- 122 (227)
T ss_pred HHHHHHHHHHHcCCEEEeCC-------------CCCCCEEEeCcchhhhcc-----cC--CceEEEeccccccCCCCC--
Confidence 99999999999999999995 789999999988766532 11 233333211000000000
Q ss_pred CCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChH
Q 009160 223 GRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA 302 (541)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~ 302 (541)
......+|.+..........+.....++|++.|+||||+ +|++++... ... +++++|+++ .+|++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl~ 187 (227)
T TIGR03089 123 LPPGVIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAWT 187 (227)
T ss_pred CCCcccchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCCC
Confidence 001123555544322121111214567999999999986 677766654 334 788999999 99999
Q ss_pred HHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccce
Q 009160 303 HVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPT 349 (541)
Q Consensus 303 h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t 349 (541)
|++++.. ++.+|+.|+++++ +++..+++. ++++|+|
T Consensus 188 H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~-----------i~~~~vT 227 (227)
T TIGR03089 188 DLEDFLATLLAPLAAGGSLVLVTHPDPARLDQI-----------AETERVT 227 (227)
T ss_pred chHHHHHHHHHHhccCceEEEecCCCHHHHHHH-----------HHhhcCC
Confidence 9999876 7788999999988 888888888 9999886
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=201.58 Aligned_cols=274 Identities=15% Similarity=0.150 Sum_probs=207.3
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVAI 136 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i 136 (541)
.++.++++.+++++||++|+... +++ ..+.+.+||.+|..++.+++..|... .+++||+|++
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~-----------n~~------~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~L 832 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTL-----------NAR------GATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVL 832 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEe-----------ccC------CcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEE
Confidence 57999999999999999999874 444 34567899999999999999999877 6899999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCC------HHHHHHHHhhcCceEEEECccchhHHHHhh--c--CCCCccEEE
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLG------EEALCYSLNETEVTTVICGSKELKKLVDLS--G--QLDTVKHVI 206 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~--~~~~~~~ii 206 (541)
+++++.|++++++||+.+|.+++|+.|... -+.+..+++.+++..|+++......++... . .......++
T Consensus 833 my~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~ 912 (1363)
T KOG3628|consen 833 MYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLIL 912 (1363)
T ss_pred EcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhh
Confidence 999999999999999999999999988642 367899999999999999987665544321 1 011122222
Q ss_pred EecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC
Q 009160 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286 (541)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~ 286 (541)
..++....... ....+. ....+.++....++.+|++-+.--++|.--|+..+|.++++.+....+..
T Consensus 913 ~~~~~~~t~~k-----------~~~~~~--k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~ 979 (1363)
T KOG3628|consen 913 VLPKLPETIRK-----------RKKNIK--KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC 979 (1363)
T ss_pred cccccchhhhh-----------hhhhhh--ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH
Confidence 22222111000 001111 01112233445678899999999999999999999999999999999988
Q ss_pred CCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHH
Q 009160 287 PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (541)
Q Consensus 287 ~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 365 (541)
.+.++.-++...+.+-..|+.. ++...+.|.+.++..|.++... +.+|...++++++.-++.+=..++...+..
T Consensus 980 -~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nn----psLll~~i~~~kvkDt~~~~~tln~c~~~l 1054 (1363)
T KOG3628|consen 980 -QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENN----PSLLLQIISQYKVKDTYPTYSTLNLCQKGL 1054 (1363)
T ss_pred -ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcC----HHHHHHHHhcccccccchhHHHHHHHHhcc
Confidence 6666666666666666666655 6777999999999888888877 677777899999999988888887776654
Q ss_pred H
Q 009160 366 R 366 (541)
Q Consensus 366 ~ 366 (541)
.
T Consensus 1055 ~ 1055 (1363)
T KOG3628|consen 1055 E 1055 (1363)
T ss_pred c
Confidence 3
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-22 Score=204.33 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=144.2
Q ss_pred CCCCeEEEEeccCCCCCccEEEechHHHHHHHHHH---HhhCCCCCCCcEEEEccChHHHHHHH-HHHHHhhcCceEEe-
Q 009160 248 VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV---MTIVPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSAIGY- 322 (541)
Q Consensus 248 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~v~~- 322 (541)
.++++++++|||||||.||+|.++|+++....... ...+ ++.++|++++..++.+..+.+ ..+.++..|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 45688999999999999999999999987654433 2334 788899998877665433332 34556788888876
Q ss_pred --CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCc
Q 009160 323 --GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400 (541)
Q Consensus 323 --~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 400 (541)
.++..+++. +++++||+++++|+++..|.+.........
T Consensus 152 ~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~---------------------------- 192 (422)
T TIGR02155 152 SGGQTEKQVQL-----------IQDFKPDIIMVTPSYMLNLLEELKRMGIDP---------------------------- 192 (422)
T ss_pred CCCCHHHHHHH-----------HHHHCCCEEEEcHHHHHHHHHHHHHcCCCc----------------------------
Confidence 334444555 999999999999999999876543210000
Q ss_pred hhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCc--
Q 009160 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL-- 478 (541)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~-- 478 (541)
...++|.+++||+++++++.+.+++.||+++++.||+||+++......... ...|.++
T Consensus 193 -----------------~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~---~~~g~~~~~ 252 (422)
T TIGR02155 193 -----------------AQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE---TQDGLHIWE 252 (422)
T ss_pred -----------------ccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc---cCCCceEec
Confidence 002799999999999999999999999999999999999853221111111 1234444
Q ss_pred CCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 479 ~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
+...++|+|+++++.+ ++|+.|||+++|.
T Consensus 253 ~~~~~eivd~~~g~~v---~~Ge~Gelvvt~~ 281 (422)
T TIGR02155 253 DHFYPEIIDPHTGEVL---PDGEEGELVFTTL 281 (422)
T ss_pred CeeEEEEECCCCCCCC---CCCCeeEEEEecC
Confidence 3578889995567655 4788999999974
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-22 Score=202.04 Aligned_cols=196 Identities=20% Similarity=0.152 Sum_probs=142.7
Q ss_pred CCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC--CCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---C
Q 009160 250 ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG--SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---G 323 (541)
Q Consensus 250 ~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~ 323 (541)
++.++++|||||||.||||+++|+++++.+......+ +++ +.|++++.+|++|++++.. ++.++..|+++++ +
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence 4578999999999999999999999999888777766 553 4468999999999999755 6778899999988 3
Q ss_pred CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhh
Q 009160 324 TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403 (541)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 403 (541)
++..+++. ++. .|+++++|.+++.+.+.. ..
T Consensus 174 ~~~~~l~~-----------i~~--~t~~~~~P~~l~~l~~~~----~~-------------------------------- 204 (386)
T TIGR02372 174 PASGIMRH-----------ARP--GDLIVGTPFIWEQLADLD----YR-------------------------------- 204 (386)
T ss_pred ChHHHHHh-----------hcc--CCEEEECcHHHHHHHhhC----cC--------------------------------
Confidence 44444444 443 289999999999886521 00
Q ss_pred HHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC-cceeccCcccccccccccCCCCCCCCCcCCCcCCeE
Q 009160 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA-PIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSF 482 (541)
Q Consensus 404 ~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~e 482 (541)
.+++|. ++||+++++++.+.+++. +. .+++.||+||+++++.... ++..|.|+|+.+
T Consensus 205 ---------------l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-----~~~~~~~~p~~~ 262 (386)
T TIGR02372 205 ---------------LPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-----PDDPFRLLPDLA 262 (386)
T ss_pred ---------------CCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-----CCCCcccCCCcc
Confidence 126775 678999999999999886 64 6999999999887554321 245678899887
Q ss_pred EEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEccccC
Q 009160 483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVALR 541 (541)
Q Consensus 483 v~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~~ 541 (541)
+++ + ++.. .|+.+. + .|.+..+.|+||+|++.||+
T Consensus 263 ~~~-~--~~~~--------------~g~~~~---~----~tgD~g~~d~~G~l~i~GR~ 297 (386)
T TIGR02372 263 CFA-D--TLSS--------------AGLARR---L----DLQDRLAWDKDGGFTILGRK 297 (386)
T ss_pred ccC-C--CccC--------------CCccce---e----ecCceEEEcCCCcEEEeccc
Confidence 754 2 2210 133221 1 13444445899999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-19 Score=181.98 Aligned_cols=197 Identities=17% Similarity=0.173 Sum_probs=143.0
Q ss_pred CCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-
Q 009160 248 VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG- 323 (541)
Q Consensus 248 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~- 323 (541)
..++++.|.|||||||.||+|.+||+++..........+ .+++++|+++...|+.+..+... .+.++..|++++..
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~ 163 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEG 163 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCC
Confidence 457889999999999999999999999877655443321 27889999999999888766544 44567788877652
Q ss_pred CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhh
Q 009160 324 TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403 (541)
Q Consensus 324 ~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 403 (541)
......+. ++.+++|.++++|..+..+.+.........
T Consensus 164 ~~~~~~~~-----------i~~~~~t~l~~~ps~ll~La~~~~~~g~~~------------------------------- 201 (445)
T TIGR03335 164 KCTFPIRI-----------IESYRPTGIVASVFKLLRLARRMKAEGIDP------------------------------- 201 (445)
T ss_pred chhHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCCc-------------------------------
Confidence 22233344 899999999999998877765433211000
Q ss_pred HHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCc--CCe
Q 009160 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL--PCS 481 (541)
Q Consensus 404 ~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~--~~~ 481 (541)
...++|.+++||+++++++.+.+++.+|+++++.||+||++....+. ...|..+ +..
T Consensus 202 --------------~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c~-------~~~g~h~~~d~~ 260 (445)
T TIGR03335 202 --------------AESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGECQ-------AVAGLHVPEDLV 260 (445)
T ss_pred --------------ccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEec-------CCCCccccCCce
Confidence 00289999999999999999999999999999999999985322111 1124433 457
Q ss_pred EEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 482 ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
.+.|+|++++..+ ++|+.|||++.+-
T Consensus 261 ~vEIvDp~~~~~v---p~Ge~GELvvT~L 286 (445)
T TIGR03335 261 HLDVYDPRHQRFL---PDGECGRIVLTTL 286 (445)
T ss_pred EEEEEcCCCCCCC---cCCCceEEEEEec
Confidence 8999994334333 5889999999864
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=142.68 Aligned_cols=204 Identities=18% Similarity=0.126 Sum_probs=146.1
Q ss_pred CCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccChH-HHHHHHHHHHHhhcCceEE
Q 009160 245 DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYLPLA-HVLELVAENLIAGVGSAIG 321 (541)
Q Consensus 245 ~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl~-h~~~~~~~~~~l~~G~~v~ 321 (541)
.....+++..|--||||||.|+-+.+|+..+......+...+ .+...+|++....-+. +..++..-+++--.|+++.
T Consensus 85 ~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vi 164 (438)
T COG1541 85 FAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVI 164 (438)
T ss_pred ccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEE
Confidence 445566778899999999999999999998877666665554 3677888876654422 1222333444555666665
Q ss_pred eCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCch
Q 009160 322 YGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401 (541)
Q Consensus 322 ~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 401 (541)
-.++..... .++.++.++||++.++|+.+..+.+.+.+.... + ..
T Consensus 165 p~~~g~~~~--------~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~--~------------------------~~- 209 (438)
T COG1541 165 PISGGNTER--------QLELMKDFKPTVIAATPSYLLYLAEEAEEEGID--P------------------------DK- 209 (438)
T ss_pred ccCCccHHH--------HHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCC--h------------------------hh-
Confidence 543322211 122389999999999999999999877654210 0 00
Q ss_pred hhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCC--CcC
Q 009160 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGA--PLP 479 (541)
Q Consensus 402 ~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~--p~~ 479 (541)
-++|.+++|+|++++++.+.+.+.||+..++.||+||..+.. .. ++.... |. .-+
T Consensus 210 ------------------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g-~~---eC~~~~-glhi~eD 266 (438)
T COG1541 210 ------------------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPG-AG---ECTERN-GLHIWED 266 (438)
T ss_pred ------------------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCc-cc---cccccc-CCCcchh
Confidence 289999999999999999999999999999999999997765 11 111112 33 335
Q ss_pred CeEEEEEecCCCCccCCCCCCCccEEEEcc
Q 009160 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAG 509 (541)
Q Consensus 480 ~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g 509 (541)
...+.|+|+.+|++++ +|+.|||.+..
T Consensus 267 ~~~~Ei~dP~t~e~l~---dge~GelV~T~ 293 (438)
T COG1541 267 HFIFEIVDPETGEQLP---DGERGELVITT 293 (438)
T ss_pred hceeeeecCCcCccCC---CCCeeEEEEEe
Confidence 7888999988898876 88899999964
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=161.75 Aligned_cols=325 Identities=20% Similarity=0.147 Sum_probs=203.7
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+-++.+.+++.+.++|.+++..+...... .+.....||++.....+.+++.|...|..+|+.|++
T Consensus 35 ~g~~~~~~~~~~~~~~~~~~~~~~p~~~~---------------~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i 99 (1032)
T KOG1178|consen 35 MGTLEDSFRRELAEAPENTGHVIIPTASE---------------SGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAI 99 (1032)
T ss_pred hcchhhHHHHHHhhcccCCCceEeecccc---------------cccccchhhhhhhcccchhHHHhhhcccccCceEEE
Confidence 34788899999999999999987542211 223346899999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCC----HHH---HHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEec
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLG----EEA---LCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMD 209 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~----~~~---l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~ 209 (541)
++..+.++++..++++++|..+++++|.++ +++ +++.+.....+++ ... +.+......+
T Consensus 100 ~~~~~~d~~v~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~--~~l--~i~~~~~~~~---------- 165 (1032)
T KOG1178|consen 100 YMLPSVDLVVSVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIV--RRL--NIIDILLNSL---------- 165 (1032)
T ss_pred eccCcCCeeeeeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceeh--hhh--hhHHHHhhcc----------
Confidence 999999999999999999999999999999 221 1111111111110 000 0000000000
Q ss_pred CCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 210 ANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
....... .. ..++..+... .....-....+|..+++.||||+||.||||.-+|..+.+...+....+ ..
T Consensus 166 -~~~~sv~------~~-~~~f~~~~~~--~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-~~ 234 (1032)
T KOG1178|consen 166 -FPKLSVE------TI-ADSFQMVLHN--EDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-PP 234 (1032)
T ss_pred -ccccchh------hc-cchhhhhhcc--CCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-Cc
Confidence 0000000 00 0111111110 111111345577899999999999999999999999999999988888 77
Q ss_pred CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe------CCcccccccchhhhcCcccccccccceEEeecHHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY------GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~------~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 362 (541)
+.++++-....++++..... ....|+.|..+.+ ..+..+.+. +++++++..+.+|++.+++.
T Consensus 235 t~s~~~~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~-----------le~y~i~~~~~~~a~~~~l~ 303 (1032)
T KOG1178|consen 235 TGSDRFTFKTSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLAST-----------LERYGITVSHLLPAMCQLLL 303 (1032)
T ss_pred CccchhhhhheeecccchHHHHhhHhhcCceeecccccCccchhhHHHH-----------HHhhhheeeeechhhhhhhh
Confidence 77777633333423333333 4445666666655 223444444 99999999999999988887
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHH
Q 009160 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~ 442 (541)
........ .......++.+ .... +.|+....+|+|...++...+..
T Consensus 304 ~~~~~~~~----------~l~~~~~~~dl-----------------~~~~-------~~Lkl~~~~~ep~~v~l~~s~~~ 349 (1032)
T KOG1178|consen 304 AILTTSLP----------LLEHAFSLSDL-----------------LTKR-------SCLKLVVLGGEPLLVSLYTSTFD 349 (1032)
T ss_pred hhcCcchh----------hhhhhhhcccc-----------------cccc-------hhheeeeecCCccchhhhhhhhh
Confidence 64211100 00000000000 0000 38999999999999999884443
Q ss_pred Hh-CCcceeccCcccccccccccCC
Q 009160 443 CL-GAPIGQGYGLTETCAGGTFSEV 466 (541)
Q Consensus 443 ~~-g~~v~~~YG~TE~~~~~~~~~~ 466 (541)
.+ -.-...-|+.|+.++..+....
T Consensus 350 ~~~~~~~~~~y~s~~~~~~~s~~~~ 374 (1032)
T KOG1178|consen 350 LLAEIFFGLPYLSTDPTGLVSYDDF 374 (1032)
T ss_pred cccceeeeecccCCCCccceeHHhh
Confidence 33 2223334999998877665433
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=139.11 Aligned_cols=387 Identities=16% Similarity=0.159 Sum_probs=244.2
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHH-HHHhcCCCCCCEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFAS-GLAQLGHKKEERVA 135 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~-~L~~~gv~~g~~V~ 135 (541)
...+..+++.+-..++..+|.++- |.+ |....+||..+..+|.+.|+ .|-+.|+.++++|.
T Consensus 93 ~~d~~avl~~~~nhs~~~ta~i~i-----------d~k-------gk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vv 154 (1363)
T KOG3628|consen 93 LTDIIAVLRYRRNHSATSTAHICI-----------DKK-------GKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVV 154 (1363)
T ss_pred hcchHHHHHhhccCCCCCceEEEE-----------cCC-------CceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEE
Confidence 344677777777788888998874 333 34568999999999999999 45555999999999
Q ss_pred EEeCCc--HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc
Q 009160 136 IFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 136 i~~~ns--~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
++...+ .|+++..++|...|.+.+|+.+..+-+++..+++....+++++.......+..........
T Consensus 155 L~Y~~~e~ie~~isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~----------- 223 (1363)
T KOG3628|consen 155 LYYRKCEAIEFLISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLA----------- 223 (1363)
T ss_pred EEEEhhhhhHHhhhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHH-----------
Confidence 999877 8999999999999999999999999999999999999999999876554332211000000
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC-------
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV------- 286 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~------- 286 (541)
.... .++..++... ........+...-. ..||-||++++|.--||+.+|+ ++.+++......
T Consensus 224 k~v~------~w~t~~~k~~---~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~ 292 (1363)
T KOG3628|consen 224 KAVA------WWKTNDFKGN---YTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARF 292 (1363)
T ss_pred HHHH------hhhcccccce---eehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHH
Confidence 0000 0111111100 00001111222222 8999999999999999999998 655544332221
Q ss_pred ------------CCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEee
Q 009160 287 ------------PDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353 (541)
Q Consensus 287 ------------~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~ 353 (541)
......++++..+...-..|++. ++.++..|.+.... |..+... +..+...+.++|.+++..
T Consensus 293 ~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~-p~~~l~~----pG~~~~l~~k~R~~~~lt 367 (1363)
T KOG3628|consen 293 AAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGC-PKEVLKP----PGLIANLITKYRATWSLT 367 (1363)
T ss_pred HHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhhhcCceeecC-chhhcCC----CcchhhhhccceeEEEee
Confidence 13456777888777777777776 78889999887652 2222222 233334478888888876
Q ss_pred cHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCC
Q 009160 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLS 433 (541)
Q Consensus 354 ~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~ 433 (541)
--..+.+......+..+. .+.|.+-+....+++|.+++.=..+.
T Consensus 368 d~~~Lkq~~~ny~~~p~a------------------------------------~~s~~k~~t~d~sslk~C~Vtc~~vd 411 (1363)
T KOG3628|consen 368 DYAGLKQPVYNYQEDPKA------------------------------------TLSFKKYKTPDLSSLKGCMVTCTAVD 411 (1363)
T ss_pred cccccCcccccccCCccc------------------------------------ccchhhccCCCccceeeeEEeeeecc
Confidence 555555444333221110 11233333344579999999888888
Q ss_pred HHHHHHHHHHh----CCc------------------ceeccCcccccccccccCCCCC----------------------
Q 009160 434 ADTQRFINICL----GAP------------------IGQGYGLTETCAGGTFSEVDDS---------------------- 469 (541)
Q Consensus 434 ~~~~~~~~~~~----g~~------------------v~~~YG~TE~~~~~~~~~~~~~---------------------- 469 (541)
.+..+-...+. |.. ....=+++|.+...--.+....
T Consensus 412 ~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~ 491 (1363)
T KOG3628|consen 412 TEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVD 491 (1363)
T ss_pred hHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEc
Confidence 77654433332 221 1111122444333221111000
Q ss_pred --------CCCCcCCCcCC-eEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhh
Q 009160 470 --------SVGRVGAPLPC-SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 470 --------~~~~vG~p~~~-~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f 527 (541)
..-.+|...|+ +.+.+++ |+.+.+ |..+++|||||.++++.++||.-+..|...|
T Consensus 492 ~e~~is~~s~kd~~~i~~g~~t~~vv~-~~t~~L--C~~~eVGEIwVsS~~~~~~~~al~~~t~~~F 555 (1363)
T KOG3628|consen 492 TEDDISSLSVKDVLCIMPGDATLAVVN-PDTNQL--CKTDEVGEIWVSSNSLGKLFYALDKQTENTF 555 (1363)
T ss_pred chhhhhhcCccccceecccceEEEEeC-CCcccc--cccCcceeEEEecCCcccceeeccccccceE
Confidence 01335555554 6666777 444433 5688999999999999999998888877766
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=104.03 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=93.3
Q ss_pred eEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--CCCCCCcEEEEcc--ChHHHHHHHHHHHHhhcC-ceEEeCCcc
Q 009160 252 VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYL--PLAHVLELVAENLIAGVG-SAIGYGTPL 326 (541)
Q Consensus 252 ~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~--pl~h~~~~~~~~~~l~~G-~~v~~~~~~ 326 (541)
-..+..||||||.|-.+..+............... .++..++++...+ +. +.+. .+... ..+.+++..
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly~------~~~~~~~~~~~~~l~ 173 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLYQ------SVNNRWISLDFFDLL 173 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHHH------HHHhccceeeecCCC
Confidence 34567799999999999999887654433322221 1344444444332 11 2111 11111 112222221
Q ss_pred cccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHH
Q 009160 327 TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLW 406 (541)
Q Consensus 327 ~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (541)
.-++. .+..+++++|+++.+.|+.+..|.+...+....
T Consensus 174 ~~~~~-------~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~----------------------------------- 211 (430)
T TIGR02304 174 APFQA-------HIKRLNQRKPSIIVAPPSVLRALALEVMEGELT----------------------------------- 211 (430)
T ss_pred cCHHH-------HHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-----------------------------------
Confidence 11111 223389999999999999999998865432100
Q ss_pred HHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCccccccc
Q 009160 407 NLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460 (541)
Q Consensus 407 ~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~ 460 (541)
-+++.++++||+++++..+.+++.||+++++.||+|| +.+
T Consensus 212 -------------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~l 251 (430)
T TIGR02304 212 -------------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFL 251 (430)
T ss_pred -------------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hhe
Confidence 1789999999999999999999999999999999999 443
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00024 Score=71.33 Aligned_cols=203 Identities=15% Similarity=0.076 Sum_probs=109.3
Q ss_pred CCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhh---CCCCCC-CcEEEEccChHHH---HH-HH-HHHHHhhcCc
Q 009160 248 VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI---VPDLGS-KDVYLAYLPLAHV---LE-LV-AENLIAGVGS 318 (541)
Q Consensus 248 ~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~-~d~~l~~~pl~h~---~~-~~-~~~~~l~~G~ 318 (541)
.++++..++-||||||.|--+.+.+..+......+... +..... .-.++...|-... ++ .. .....+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 34567778889999999865666666665554333322 212221 2233333343221 11 11 1222233444
Q ss_pred eEEe----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCC
Q 009160 319 AIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGS 394 (541)
Q Consensus 319 ~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 394 (541)
.-.+ .+...+.+. +.......+|..+++.|.++-.+...+++.....
T Consensus 167 ~~~l~~~~ld~~~~~~~-------L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~---------------------- 217 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEA-------LFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRF---------------------- 217 (365)
T ss_pred eeeecCCccCHHHHHHH-------HHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcc----------------------
Confidence 4222 122222222 1111345678999999987777666543321110
Q ss_pred CCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEcc------CCCCH-HHHHHHHHHhCC----cceeccCcccccccccc
Q 009160 395 WFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGG------APLSA-DTQRFINICLGA----PIGQGYGLTETCAGGTF 463 (541)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg------~~l~~-~~~~~~~~~~g~----~v~~~YG~TE~~~~~~~ 463 (541)
.+.+..+.+-.|| +.++. +..+.+++.||+ .+++.|||||.......
T Consensus 218 ----------------------~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~ 275 (365)
T PF04443_consen 218 ----------------------RLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYE 275 (365)
T ss_pred ----------------------cCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhhee
Confidence 0112456666665 45765 467788888998 68999999996543322
Q ss_pred cCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCc
Q 009160 464 SEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNV 512 (541)
Q Consensus 464 ~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v 512 (541)
. ..++. +.|.- |.|.|+.+.+. ++.|++|-|-|=.+..
T Consensus 276 ~-----~~~~~--~~p~w-V~iRDp~tl~~---~~~Ge~Gli~vidl~~ 313 (365)
T PF04443_consen 276 C-----GHGHF--HVPPW-VIIRDPETLEP---LPPGETGLIQVIDLAN 313 (365)
T ss_pred C-----CCCcc--cCCCe-EEEECCCCCcC---CCCCCeeEEEEEcccc
Confidence 2 11111 22222 77778666554 5588999998876643
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.83 Score=46.70 Aligned_cols=107 Identities=16% Similarity=0.003 Sum_probs=82.4
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCc--HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
..-+|+.++...+..+|+.|...|..+||+|.++..-+ ..-+-..+|+.+.|++++|+.+. .-++-..++++.++++
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence 45689999999999999999999999999998877622 11267788999999999999883 3567788999999999
Q ss_pred EEECccchhHHHHhhcCC------CCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLSGQL------DTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~~~~------~~~~~ii~~~~~ 211 (541)
+.+.+..+-.+.+..... -.++.++.-.+.
T Consensus 186 I~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~ 221 (438)
T COG1541 186 IAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEP 221 (438)
T ss_pred EEEChHHHHHHHHHHHHcCCChhhcceeEEEEeccc
Confidence 999998775555433222 345555555444
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=87.13 E-value=7 Score=40.47 Aligned_cols=106 Identities=11% Similarity=-0.008 Sum_probs=75.0
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH--HHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 105 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
..+|..++......++..+...|+++||++......+. ..+...+++...|+..+++.+.. .+.+...+++.+++++
T Consensus 93 v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l 171 (422)
T TIGR02155 93 VGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII 171 (422)
T ss_pred eccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence 35678887777777777888789999999887655432 22334567889999999987754 5788899999999999
Q ss_pred EECccchhHHHHhh--cCC----CCccEEEEecCC
Q 009160 183 ICGSKELKKLVDLS--GQL----DTVKHVICMDAN 211 (541)
Q Consensus 183 i~~~~~~~~~~~~~--~~~----~~~~~ii~~~~~ 211 (541)
++....+..+.+.. ... ..++.+++-.+.
T Consensus 172 ~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~ 206 (422)
T TIGR02155 172 MVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEP 206 (422)
T ss_pred EEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCc
Confidence 99988765554322 111 356666665443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=86.16 E-value=11 Score=39.39 Aligned_cols=104 Identities=10% Similarity=0.064 Sum_probs=73.2
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH--HHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 105 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
..+|..++...+...+..+...|+++||++.++.+.+. ......+++...|+.++|... .+....++++.++..+
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 46899999988888888888889999999999887553 223445788899998887653 2345778899999999
Q ss_pred EECccchhHHHHh-h-cC----CCCccEEEEecCC
Q 009160 183 ICGSKELKKLVDL-S-GQ----LDTVKHVICMDAN 211 (541)
Q Consensus 183 i~~~~~~~~~~~~-~-~~----~~~~~~ii~~~~~ 211 (541)
++.....-.+.+. . .. ...++.+++..+.
T Consensus 181 ~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~ 215 (445)
T TIGR03335 181 VASVFKLLRLARRMKAEGIDPAESSIRRLVVGGES 215 (445)
T ss_pred EECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCC
Confidence 8876654333321 1 11 2456776665543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=81.73 E-value=83 Score=34.13 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCCCCeEEEEeccCCCC-CccEEEechHHHHH
Q 009160 247 PVSADVAVIMYTSGSTG-LPKGVMMTHGNVLA 277 (541)
Q Consensus 247 ~~~~~~a~i~~TSGTTG-~PKgV~~th~~l~~ 277 (541)
..++.+.+..-|||||| .+|-+.+|+..+-.
T Consensus 98 L~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 98 LCSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred cCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 33566778899999997 59999999997765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 541 | ||||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 7e-14 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 3e-05 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 2e-13 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 2e-07 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-12 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 1e-12 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 2e-07 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 1e-12 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 1e-07 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 1e-12 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 2e-07 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 3e-11 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-10 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 4e-10 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 5e-10 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 5e-10 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 6e-10 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 6e-10 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 6e-10 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 6e-10 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 6e-10 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 7e-10 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 9e-10 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-08 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-09 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-08 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-09 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 2e-09 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-09 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 6e-09 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-04 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-08 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 8e-08 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 3e-07 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 3e-07 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 4e-07 | ||
| 3pbk_A | 583 | Structural And Functional Studies Of Fatty Acyl-Ade | 8e-07 | ||
| 3t5a_A | 480 | Crystal Structure Of N-Terminal Domain Of Faal28 G3 | 9e-07 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-06 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 7e-06 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 6e-05 | ||
| 3e53_A | 480 | Crystal Structure Of N-Terminal Domain Of A Fatty A | 7e-05 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 2e-04 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 2e-04 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 5e-04 |
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 | Back alignment and structure |
|
| >pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 541 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 3e-57 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 3e-56 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 1e-55 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 2e-55 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 8e-52 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 1e-51 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 2e-50 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 3e-50 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 6e-50 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 3e-49 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 1e-48 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 1e-48 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 5e-48 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 9e-47 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 3e-45 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 5e-32 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 3e-31 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 5e-24 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 6e-07 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 1e-21 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 3e-07 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 8e-21 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 3e-07 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 2e-19 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 2e-05 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 2e-14 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 4e-13 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 2e-12 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 3e-12 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 8e-12 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 2e-11 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 2e-10 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 4e-10 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 8e-10 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 3e-57
Identities = 93/491 (18%), Positives = 170/491 (34%), Gaps = 112/491 (22%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADN-GRSFEKLHLGEYEWLTYGQAFETIC 117
+LA+ + + ++ G+K +IS E + S + + + E
Sbjct: 20 SLADRIDAAAEKFGEK-----TAIISAEPKFPSEFPES-----------MNFLEICEVTK 63
Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
ASG+++ G +K E V + ++ + + +R T V I L + LN++
Sbjct: 64 KLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDS 123
Query: 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
E TT++ S + + + V+ V + + S ++V G
Sbjct: 124 EATTLVVHSMLYENFKPVLEKTG-VERVFVVGGEVNS---------------LSEVMDSG 167
Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
E+ + DVA+I YT G+TG+PKGVM+TH N+ A + L D +
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG-LSHMDTIVG 226
Query: 298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVP-- 355
+P+ H E NL+ VG+ + I+K + T +VP
Sbjct: 227 CMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEK--------YKGTFSWAVPPA 278
Query: 356 --AILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSK 413
+++ + + +D +
Sbjct: 279 LNVLVNTLESSNKT------------YDWS------------------------------ 296
Query: 414 VRAILGGRIRFILSGGAPLSADTQR-------FINICLGAPIGQGYGLTETCAGGTFSEV 466
++ +G P++ Q +G+TE C T +
Sbjct: 297 -------YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP 349
Query: 467 DDSS-VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEK 522
G P+ +K+I E G + GEIVI GPN+ GY+K E++
Sbjct: 350 LRLDKSTTQGVPMSDIELKVIS-LEDG-----RELGVGESGEIVIRGPNIFKGYWKREKE 403
Query: 523 TKEVYKVMLDR 533
+E +
Sbjct: 404 NQECWWYDEKG 414
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 3e-56
Identities = 91/481 (18%), Positives = 154/481 (32%), Gaps = 104/481 (21%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
+ + + + G + A G +Y + E C
Sbjct: 24 SAGTQLRKYMERYAKL---GAIAFTN-----AVTGVD-----------YSYAEYLEKSCC 64
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
L G + R+A+ ++ E+F+ + V V L +SL ++
Sbjct: 65 LGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISK 124
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANI-PSAVSSVEQSGRWKITSFADVQILG 237
T V K L K++ + + T+K ++ +D+ + ++ +
Sbjct: 125 PTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFK 184
Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP--DLGSKDVY 295
+ VA+IM +SGSTGLPKGV +TH N++ S + +
Sbjct: 185 TVEVDRKE-----QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAV 239
Query: 296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPL------TLTDTSSKIKKGTQGDASVLRPT 349
L +P H + + G + ++ + T
Sbjct: 240 LTVVPFHHGFGMFT------TLGYLICGFRVVMLTKFDEETFLKTLQD--------YKCT 285
Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
+ VP + + K L K +DL
Sbjct: 286 SVILVPTLFAIL---------NKSELLNK-YDL--------------------------- 308
Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTFSEVDD 468
S + I SGGAPLS + + QGYGLTET + + D
Sbjct: 309 --SNLVEI--------ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGD 358
Query: 469 SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPNVTVGYFKNEEKTKE 525
G G +P K+ID + + RGE+ + GP + GY N E TKE
Sbjct: 359 DKPGASGKVVPLFKAKVID-LDTK-----KSLGPNRRGEVCVKGPMLMKGYVNNPEATKE 412
Query: 526 V 526
+
Sbjct: 413 L 413
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 1e-55
Identities = 92/435 (21%), Positives = 149/435 (34%), Gaps = 89/435 (20%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 163
Query: 227 ITSFADVQILGRENPVDADYPVSA---DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283
+ +F + N D +A+IM +SGSTGLPKGV + H S
Sbjct: 164 MYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHAR 223
Query: 284 TIVP--DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPL------TLTDTSSKI 335
+ + L+ +P H + + G + +
Sbjct: 224 DPIFGNQIIPDTAILSVVPFHHGFGMFT------TLGYLICGFRVVLMYRFEEELFLRSL 277
Query: 336 KKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW 395
+ + VP + AK L K +DL
Sbjct: 278 QD--------YKIQSALLVPTLFSFF---------AKSTLIDK-YDL------------- 306
Query: 396 FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGL 454
S + I SGGAPLS + I QGYGL
Sbjct: 307 ----------------SNLHEI--------ASGGAPLSKEVGEAVAKRFHLPGIRQGYGL 342
Query: 455 TETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPN 511
TET + + D G VG +P K++D + G + RGE+ + GP
Sbjct: 343 TETTSAILITPEGDDKPGAVGKVVPFFEAKVVD-LDTG-----KTLGVNQRGELCVRGPM 396
Query: 512 VTVGYFKNEEKTKEV 526
+ GY N E T +
Sbjct: 397 IMSGYVNNPEATNAL 411
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 2e-55
Identities = 91/434 (20%), Positives = 148/434 (34%), Gaps = 89/434 (20%)
Query: 99 LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTV 158
+ + ++Y + A+ L G + +RVA + E V R
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVY 80
Query: 159 VTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
+ + + L Y + + E V+C + + ++ ++ + P S
Sbjct: 81 LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLG-----PDGRGS 135
Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
+ + +FA + AD D+A I+YTSG+TG KG M++H N+ +
Sbjct: 136 LTDAAAGASEAFATI-------DRGAD-----DLAAILYTSGTTGRSKGAMLSHDNLASN 183
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLT---DTSSKI 335
++ DV + LP+ H L + + D +
Sbjct: 184 SLTLVDYW-RFTPDDVLIHALPIYHTHGLFV-----ASNVTLFARGSMIFLPKFDPDKIL 237
Query: 336 KKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW 395
+ R TV+ VP R
Sbjct: 238 D-------LMARATVLMGVPTFYTR----------------------------------- 255
Query: 396 FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLT 455
LL ++ G +R +SG APL ADT R + G + + YG+T
Sbjct: 256 ------------LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMT 303
Query: 456 ETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNV 512
ET + D G VG LP ++ D PE G +PR G I + GPNV
Sbjct: 304 ETNMNTSNPYDGDRVPGAVGPALPGVSARVTD-PETG-----KELPRGDIGMIEVKGPNV 357
Query: 513 TVGYFKNEEKTKEV 526
GY++ EKTK
Sbjct: 358 FKGYWRMPEKTKSE 371
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 8e-52
Identities = 94/489 (19%), Positives = 156/489 (31%), Gaps = 145/489 (29%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
TLA+++ ++ D+ T +G LT+
Sbjct: 7 TLADVYRRNAALFPDR------------TAFMVDGVR-----------LTHRDYLARAER 43
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
ASGL + G +RVAI + +E + ++ + L + + + L +
Sbjct: 44 LASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGA 103
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
+ V+ G+ + + L VK + + + T F+
Sbjct: 104 PSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASD---TPFSAP----- 155
Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY 298
A D VI++T+ G P+G +++ GN+L S+++ L DV L
Sbjct: 156 --EFGAA-----DGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGM 207
Query: 299 LPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL------------ 346
LPL HV + +G L G ASV+
Sbjct: 208 LPLFHV-------------TGLGLMLTLQQA-----------GGASVIAAKFDPAQAARD 243
Query: 347 ----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
+ TVMA +L + D A +L+
Sbjct: 244 IEAHKVTVMAEFAPMLGN------------------ILDQAAPAQLA------------- 272
Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
+R + P + +RF C A +G +ET T
Sbjct: 273 ------------------SLRAVTGLDTPETI--ERFEATCPNATFWATFGQSETSGLST 312
Query: 463 FSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYF 517
F+ D S GR PL + ++D E P+P GEIV+ GP V GY+
Sbjct: 313 FAPYRDRPKSAGR---PLFWRTVAVVD-AED------RPLPPGEVGEIVLRGPTVFKGYW 362
Query: 518 KNEEKTKEV 526
N T+
Sbjct: 363 NNAAATQHA 371
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 1e-51
Identities = 100/486 (20%), Positives = 164/486 (33%), Gaps = 120/486 (24%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
L ++ H K L NG TY T
Sbjct: 23 PLHSYVLENLSNHSSKPCL----------INGANGDV-----------YTYADVELTARR 61
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
ASGL ++G ++ + + +F + E+ +A G R + L +
Sbjct: 62 VASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASR 121
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
+I + +K+ D + + D V+C+D+ + F+++
Sbjct: 122 AKLLITQACYYEKVKDFARESDV--KVMCVDSAPDGCLH------------FSELTQADE 167
Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP---DLGSKDVY 295
D DV + Y+SG+TGLPKGVM+TH ++ +V+ + S+DV
Sbjct: 168 NEAPQVDISPD-DVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVI 226
Query: 296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL------TDTSSKIKKGTQGDASVLRPT 349
L LP+ H+ L + + + G P+ + I+K + +
Sbjct: 227 LCVLPMFHIYALN-----SIMLCGLRVGAPILIMPKFEIGSLLGLIEK--------YKVS 273
Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
+ VP ++ + AK K DL
Sbjct: 274 IAPVVPPVMMSI---------AKSPDLDK-HDL--------------------------- 296
Query: 410 VFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFS---- 464
S +R I SGGAPL + A +GQGYG+TE
Sbjct: 297 --SSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFA 346
Query: 465 -EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPNVTVGYFKNE 520
E D G G + + +K++D PE G + +P GEI I G + GY +
Sbjct: 347 KEPFDIKPGACGTVVRNAEMKIVD-PETG-----ASLPRNQPGEICIRGDQIMKGYLNDP 400
Query: 521 EKTKEV 526
E T
Sbjct: 401 EATSRT 406
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-50
Identities = 91/429 (21%), Positives = 132/429 (30%), Gaps = 80/429 (18%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
TYG+ E FAS L LG EER+ + VA G V V L
Sbjct: 49 TTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
Y L + VI ++ + + + VS +S
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLI--------VSQPRESEPRL 160
Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
F + ++ P D+A +Y+SGSTG PKG + TH N+ T
Sbjct: 161 APLFEE--LIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKP 218
Query: 286 VPDLGSKDVYLAYLPLAHVLELVAENLIAGV---GSAIGYGTPLTLTDTSSKIKKGTQGD 342
+ + DV + L L L + +AI T +++ +
Sbjct: 219 ILGIAENDVVFSAAKLFFAYGLGN-GLTFPLSVGATAILMAERPTADAIFARLVE----- 272
Query: 343 ASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
RPTV VP
Sbjct: 273 ---HRPTVFYGVPT---------------------------------------------- 283
Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
L N+LV + A IR S G L + G I G G TE
Sbjct: 284 -LYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFL 342
Query: 463 FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKN 519
+ G G P+P I+L D G +P G++ I GP+ V Y+ N
Sbjct: 343 SNRAGAVEYGTTGRPVPGYEIELRD-EAG------HAVPDGEVGDLYIKGPSAAVMYWNN 395
Query: 520 EEKTKEVYK 528
EK++ +
Sbjct: 396 REKSRATFL 404
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 3e-50
Identities = 90/490 (18%), Positives = 154/490 (31%), Gaps = 124/490 (25%)
Query: 42 RNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHL 101
+ + LV S L D+ + RS
Sbjct: 7 HHHHSSGLVPRGSHMSSLFPALSPAPTGAPADR------------PALRFGERS------ 48
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
LTY + A + RVA++A E VA+ V V +
Sbjct: 49 -----LTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98
Query: 162 YASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
G++ L + L+++ + V+ DA +P A+ ++E
Sbjct: 99 NPKSGDKELAHILSDSAPSLVLAPP----------------------DAELPPALGALE- 135
Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
++ + E+ D D A+++YTSG+TG PKG ++ + T+ A
Sbjct: 136 ----RVDVDVRARGAVPEDGADDG-----DPALVVYTSGTTGPPKGAVIPRRALATTLDA 186
Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
+ +DV + LPL HV L+ G+ + G + S
Sbjct: 187 LAD-AWQWTGEDVLVQGLPLFHVH-----GLVLGILGPLRRGGSVRHLGRFST------- 233
Query: 342 DASVL-----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWF 396
T++ VP + R+ D A+ L+
Sbjct: 234 -EGAARELNDGATMLFGVPTMYHRI-------------AETLPADPELAKALA------- 272
Query: 397 GAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE 456
R ++SG A L I G + + YG+TE
Sbjct: 273 ------------------------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTE 308
Query: 457 TCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGY 516
T + + G VG PLP ++L++ +G + + GEI + GPN+ Y
Sbjct: 309 TLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEY 367
Query: 517 FKNEEKTKEV 526
+ T
Sbjct: 368 LNRPDATAAA 377
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 6e-50
Identities = 85/479 (17%), Positives = 149/479 (31%), Gaps = 123/479 (25%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
+L + +++G + D S TY +
Sbjct: 2 SLDFWLYKQAQQNGHH------------IAITDGQES-----------YTYQNLYCEASL 38
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
A L ++ RV ++ D + + + C+ N+ + I L + + +
Sbjct: 39 LAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSID 95
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
V + C L Q+ ++ + +I + G TS V
Sbjct: 96 VQLIFCTLP----LELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKES 151
Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGSKDVYLA 297
+ + D+A IM+TSG+TG K V T N A SA+ +L+
Sbjct: 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYA--SAIGCKESLGFDRDTNWLS 209
Query: 298 YLPLAHVLELVAENLIAGVGS---AIGYGTPLTL------TDTSSKIKKGTQGDASVLRP 348
LP+ H I+G+ A+ G + + + IK R
Sbjct: 210 VLPIYH---------ISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNE--------RI 252
Query: 349 TVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNL 408
T ++ VP L+ + + + L +
Sbjct: 253 THISLVPQTLNWL-------------MQQGLHEPY------------------------- 274
Query: 409 LVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
++ IL GGA LSA + + PI +G+TETC+ + +
Sbjct: 275 ------------NLQKILLGGAKLSATMIETALQ--YNLPIYNSFGMTETCSQFLTATPE 320
Query: 468 DSS--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524
VG P +K+ + P GE++I G NV GY + T
Sbjct: 321 MLHARPDTVGMPSANVDVKIKN-PNKE--------GHGELMIKGANVMNGYLYPTDLTG 370
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 3e-49
Identities = 76/480 (15%), Positives = 141/480 (29%), Gaps = 119/480 (24%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
T+ E+ ++ D +A R LT+ + +
Sbjct: 3 TVNEMLRRAATRAPDH------------CALAVPARGLR---------LTHAELRARVEA 41
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
A+ L G + ++RVA+ A A+ +A+ R + L L + E
Sbjct: 42 VAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGE 101
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
+T + +++ D Q + +I + + +
Sbjct: 102 MTAAVIA--VGRQVADAIFQSGSGARIIFLGDLVRDG------------------EPYSY 141
Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGSKDVYLA 297
P++ A A I YTSG+TGLPK ++ + V + T V G +V L
Sbjct: 142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLG 201
Query: 298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDA-SVL------RPTV 350
+PL HV+ A + +A+ + + L + T
Sbjct: 202 LMPLYHVVGFF-----AVLVAALALDGTYVVVEEF---------RPVDALQLVQQEQVTS 247
Query: 351 MASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLV 410
+ + P LD + + L
Sbjct: 248 LFATPTHLDALAAAAAHAGSS--------LKLD--------------------------- 272
Query: 411 FSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS 470
+R + GA + ++ L YG TE + +
Sbjct: 273 ----------SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGT 322
Query: 471 VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPN-VTVGYFKNEEKTKEV 526
P S ++++ GG D + GE+++A + VGY + T E
Sbjct: 323 EMA---PGFFSEVRIVR-IGGG---VDEIVANGEEGELIVAASDSAFVGYLNQPQATAEK 375
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-48
Identities = 89/430 (20%), Positives = 140/430 (32%), Gaps = 97/430 (22%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY Q A L LG K +RVA+ E+ G + V I L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ + L+++ VI G+ + + Q D V
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------- 147
Query: 227 ITSFADVQILGRENPVDADYPVSA-DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
S A+ L + D IMYTSG+TG PKGV+ TH +V + S+ +
Sbjct: 148 ADSLAER--LRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST 205
Query: 286 VPDLGSKDVYLAYLPLAHV--LELVAENLIAGVGSAIGYG-TPLTLTDTSSKIKKGTQGD 342
+ D+ +D L LP+ HV L V + + GV + I +
Sbjct: 206 I-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL---IVEE---- 257
Query: 343 ASVLRPTVMASVPAILDRVRD--GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWG 400
R + +VPAIL+ +R + D
Sbjct: 258 ----RVCIGGAVPAILNFMRQVPEFAE------------LDA------------------ 283
Query: 401 LEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460
R + +GGAP+ + + QGY LTE+C G
Sbjct: 284 -----------PDFRYFI--------TGGAPMPEALIKIYAA-KNIEVVQGYALTESCGG 323
Query: 461 GTFSEVDDSS--VGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR--GEIVIAGPNVTVGY 516
GT +D+ G G + + + +G GE+VI + Y
Sbjct: 324 GTLLLSEDALRKAGSAGRATMFTDVAVRG-DDG------VIREHGEGEVVIKSDILLKEY 376
Query: 517 FKNEEKTKEV 526
+ E T++
Sbjct: 377 WNRPEATRDA 386
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 1e-48
Identities = 76/491 (15%), Positives = 137/491 (27%), Gaps = 124/491 (25%)
Query: 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113
W L + + H + R L+Y +
Sbjct: 27 WIDQ-PLTRILTVGVQSHPHS------------LAIICGERQ-----------LSYIELD 62
Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
N A+ LA+ G K + + AE+++ + V V+ S + L
Sbjct: 63 RLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAF 122
Query: 174 LNETEVTTVIC-----GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKIT 228
+ + + +I + + L + + ++ ++
Sbjct: 123 IKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDF------------- 169
Query: 229 SFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288
D E VD + +VA + GSTG PK + TH + +V A I
Sbjct: 170 GLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G 228
Query: 289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL-- 346
L S L LP H L G + G + + +
Sbjct: 229 LNSNTRLLCALPAPHNFMLS----SPGALGVLHAGGCVVMAPNPEP--------LNCFSI 276
Query: 347 ----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
+ + + VP+ W LE
Sbjct: 277 IQRHQVNMASLVPSA--------------------------------------VIMW-LE 297
Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
K ++ + GGA R + L + Q +G+ E
Sbjct: 298 KAAQYKDQIQ--------SLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLV--N 347
Query: 463 FSEVDDSS---VGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVG 515
++ +DDS G P+ IK++D + +P G + GP G
Sbjct: 348 YTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQY------REVPEGEIGMLATRGPYTFCG 400
Query: 516 YFKNEEKTKEV 526
Y+++ E +V
Sbjct: 401 YYQSPEHNSQV 411
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 178 bits (453), Expect = 5e-48
Identities = 93/486 (19%), Positives = 154/486 (31%), Gaps = 112/486 (23%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
+L + Q+ E K L G TY
Sbjct: 62 SLHDYIFQNISEFATKPCL----------INGPTGHV-----------YTYSDVHVISRQ 100
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
A+ +LG + + V + E+ ++ R T + +
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
+I ++ + K+ L V I + ++P G + T
Sbjct: 161 TKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIP------EGCLRFTELTQSTTEAS 214
Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD---LGSKDVY 295
E + DV + Y+SG+TGLPKGVM+TH ++ +V+ + S DV
Sbjct: 215 EVIDSVEISPD-DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVI 273
Query: 296 LAYLPLAHVLELVAENLIAGVGSAIGYGTPL------TLTDTSSKIKKGTQGDASVLRPT 349
L LP+ H+ L + + + G + + I++ + T
Sbjct: 274 LCVLPMFHIYALN-----SIMLCGLRVGAAILIMPKFEINLLLELIQR--------CKVT 320
Query: 350 VMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLL 409
V VP I+ + AK ++K +DL
Sbjct: 321 VAPMVPPIVLAI---------AKSSETEK-YDL--------------------------- 343
Query: 410 VFSKVRAILGGRIRFILSGGAPLSADTQ-RFINICLGAPIGQGYGLTETCAGGTFS---- 464
S +R + SG APL + + A +GQGYG+TE S
Sbjct: 344 --SSIRVV--------KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFA 393
Query: 465 -EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVIAGPNVTVGYFKNE 520
E G G + + +K++D P+ G + GEI I G + GY N
Sbjct: 394 KEPFPVKSGACGTVVRNAEMKIVD-PDTG-----DSLSRNQPGEICIRGHQIMKGYLNNP 447
Query: 521 EKTKEV 526
T E
Sbjct: 448 AATAET 453
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 9e-47
Identities = 85/492 (17%), Positives = 151/492 (30%), Gaps = 130/492 (26%)
Query: 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113
W G T +L ++GD+ + +Y +
Sbjct: 22 WAGE-TFGDLLRDRAAKYGDR------------IAITCGNTH-----------WSYRELD 57
Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
A+G +LG ++++RV + E+F + FR V S + Y
Sbjct: 58 TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117
Query: 174 LNETEVTTVIC-----GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKIT 228
E I G + +L T+K++I +
Sbjct: 118 CEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGE-------------AEEFL 164
Query: 229 SFADVQILGRENP-VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
D+ + P V + DVA + + GSTGL K + TH + + ++ + +
Sbjct: 165 PLEDLHTEPVKLPEVKSS-----DVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC- 218
Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL- 346
L VYLA LP+AH L + ++ + G + L+ + S
Sbjct: 219 WLDHSTVYLAALPMAHNYPLSSPGVLG----VLYAGGRVVLSPSPSP--------DDAFP 266
Query: 347 -----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
+ T+ A VP + W +
Sbjct: 267 LIEREKVTITALVPPL--------------------------------------AMVW-M 287
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGG 461
+ S ++ + GGA SA+ R + G + Q +G+ E
Sbjct: 288 DAASSRRDDLSSLQ--------VLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV-- 337
Query: 462 TFSEVDDSS---VGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTV 514
++ +DD V G P+ P ++ D + G ++ GP
Sbjct: 338 NYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHD------RDVKPGETGHLLTRGPYTIR 390
Query: 515 GYFKNEEKTKEV 526
GY+K EE
Sbjct: 391 GYYKAEEHNAAS 402
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 3e-45
Identities = 75/438 (17%), Positives = 133/438 (30%), Gaps = 100/438 (22%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
L+Y + + N A L + G K E + AE ++ + V V S
Sbjct: 51 LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
Query: 167 EEALCYSLNETEVTTVIC-----GSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221
L ++ E +I L + +++ V ++ + +
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAIN 170
Query: 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
P AD +VA + G+TG PK + TH + +V
Sbjct: 171 HPAEDF----------TATPSPAD-----EVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR 215
Query: 282 VMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQG 341
+ I + YL +P AH + + G G + L S
Sbjct: 216 SVEIC-QFTQQTRYLCAIPAAHNYAMSS----PGSLGVFLAGGTVVLAADPSA------- 263
Query: 342 DASVL------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW 395
+ V A VP + + + LA
Sbjct: 264 -TLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR--------AQLA------------ 302
Query: 396 FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLT 455
++ + GGA LSA I +G + Q +G+
Sbjct: 303 -------------------------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMA 337
Query: 456 ETCAGGTFSEVDDSS---VGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPR---GEIVIA 508
E ++ +DDS+ + G P+ P + + D EG +P+P+ G ++
Sbjct: 338 EGL--VNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEG------NPLPQGEVGRLMTR 388
Query: 509 GPNVTVGYFKNEEKTKEV 526
GP GY+K+ +
Sbjct: 389 GPYTFRGYYKSPQHNASA 406
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 5e-32
Identities = 87/546 (15%), Positives = 150/546 (27%), Gaps = 148/546 (27%)
Query: 37 PGHALRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSF 96
H + + S + +L + A +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMSVRSLPAALRACARLQPHD--------------PAFTFMDY 48
Query: 97 EKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV 156
E+ G LT+ Q + N A L++ G +RV I A E+ VA G +
Sbjct: 49 EQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGR 107
Query: 157 TVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216
V + G + ++ S ++ + + V
Sbjct: 108 IAVPLSVPQGGVTD----------------ERSDSVLSDSS----PVAILTTSSAVDDVV 147
Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPV--SADVAVIMYTSGSTGLPKGVMMTHGN 274
V + S +V +L + P + A + YTSGST P GV+M+H N
Sbjct: 148 QHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQN 207
Query: 275 VLATVSAVM-----TIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLT 329
V +M +++LP H + L+ G+ + I G P LT
Sbjct: 208 VRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM-----GLVIGICAPILGGYPAVLT 262
Query: 330 DTSSKIKKGTQ--GDASVLRPTVMASVP-----AILDRVRDGVRKKVDAKGGLSKKLFDL 382
S +++ + + A+ P R D D
Sbjct: 263 SPVSFLQRPARWMHLMASDFHAFSAA-PNFAFELAARRTTDDDMAGRD------------ 309
Query: 383 AYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFIN 441
+ I LSG + A T +RF +
Sbjct: 310 ----------------------------LGNILTI--------LSGSERVQAATIKRFAD 333
Query: 442 ICLGAPIG-------QGYGLTETCAGGTFSEVDDS-----------SVGRV--------- 474
A Y L E S+ S G
Sbjct: 334 --RFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGAT 391
Query: 475 -----GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNVTVGYFKNEEKTKEV 526
P ++++D + P GEI + G NV GY++ ++++
Sbjct: 392 SLISYMLPRSP-IVRIVD-SDTC-----IECPDGTVGEIWVHGDNVANGYWQKPDESERT 444
Query: 527 YKVMLD 532
+ +
Sbjct: 445 FGGKIV 450
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-31
Identities = 110/497 (22%), Positives = 177/497 (35%), Gaps = 139/497 (27%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
L + E++ G ++++SR GE TY + ++
Sbjct: 19 NLWDFLERAAALFGR------KEVVSRLHT-------------GEVHRTTYAEVYQRARR 59
Query: 119 FASGLAQLGHKKEERVAIFA-DTRA--E-WF-VALQGCFRRNVTVVTIYASLGEEALCYS 173
GL LG +RVA + E +F V G + T L + + Y
Sbjct: 60 LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA-----VLHTANPRLSPKEIAYI 114
Query: 174 LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADV 233
LN E ++ L + + G+L TV+H + MD P + E+
Sbjct: 115 LNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEE------------ 162
Query: 234 QILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAVMTIVPDLGSK 292
LG E P + YT+G+TGLPKGV+ +H VL +++A + L K
Sbjct: 163 -ALGEEAD-PVRVP-ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 219
Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSK-IKKGTQGDASVL----- 346
DV L +P+ HV + P T +K + G + D + L
Sbjct: 220 DVVLPVVPMFHVN---------------AWCLPYAATLVGAKQVLPGPRLDPASLVELFD 264
Query: 347 --RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKL 404
T A VP + + +++ G RL
Sbjct: 265 GEGVTFTAGVPTVW----LALADYLESTG------------HRLK--------------- 293
Query: 405 LWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS 464
+ R ++G G A + RF +G + QGYGLTET +
Sbjct: 294 -------TLRRLVVG--------GSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQN 336
Query: 465 ----EVDDSSV-------GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR-----GEIVIA 508
++ S + G P+P +++ D EG P+P+ GE+ +
Sbjct: 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEG------RPVPKDGKALGEVQLK 389
Query: 509 GPNVTVGYFKNEEKTKE 525
GP +T GY+ NEE T+
Sbjct: 390 GPWITGGYYGNEEATRS 406
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 1e-21
Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 29/235 (12%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
E +TY Q + A+ L G K +RV + A GC V I
Sbjct: 36 ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI 95
Query: 162 YASLGEEA---LCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218
Y E+ + ++ V+ + +KK +++
Sbjct: 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA-------------------DELNT 136
Query: 219 VEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
+ + + +++ + S D+A + YTSGST PKGVM++H N+L
Sbjct: 137 NPKFLKIPAIALESIELNRSSSWQPTS-IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDN 195
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSS 333
++ + T + + + ++LP H + LI + + I G + S
Sbjct: 196 LNKIFTSF-HMNDETIIFSWLPPHHDM-----GLIGCILTPIYGGIQAIMMSPFS 244
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 27/142 (19%), Positives = 41/142 (28%), Gaps = 42/142 (29%)
Query: 420 GRIRFILSGGAPLSADT-QRFINICLGAPIG-------QGYGLTETCAGGTFSEVDDSSV 471
+G P+ +T + F G YGL E T S
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQ--AFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYK 346
Query: 472 -----------GRV----------------GAPLPCSFIKLIDWPEGGYLTSDSPMPRGE 504
RV G P+ +K+ID P+ + GE
Sbjct: 347 TLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ--EVKIID-PDTLIPCDFDQV--GE 401
Query: 505 IVIAGPNVTVGYFKNEEKTKEV 526
I + +V GY+ E+T+
Sbjct: 402 IWVQSNSVAKGYWNQPEETRHA 423
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 8e-21
Identities = 28/196 (14%), Positives = 77/196 (39%), Gaps = 14/196 (7%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVT 160
G+ + + E A+ L+ G ++ +RVA+ EW++ + GC R + +
Sbjct: 69 GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMP 128
Query: 161 IYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVE 220
+ + Y L ++ ++ G + ++++ ++ + +++ + + + +
Sbjct: 129 GTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFK 188
Query: 221 QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS 280
+ T+ V + + + I +TSG++GLPK ++ ++
Sbjct: 189 KLLNEASTTHHCV-------ETGSQ-----EASAIYFTSGTSGLPKMAEHSYSSLGLKAK 236
Query: 281 AVMTIVPDLGSKDVYL 296
L + D+
Sbjct: 237 MDAGWT-GLQASDIMW 251
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 15/116 (12%)
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET---CAGGTFSEVDDSSVGRVGAP 477
++ ++ G L +T G I + YG TET C ++ +G
Sbjct: 323 HLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGT---A 379
Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVT-----VGYFKNEEKTKEVYK 528
C +++ID +G L + G+I I + GY N +KT +
Sbjct: 380 ASCYDVQIID-DKGNVLPPGTE---GDIGIRVKPIRPIGIFSGYVDNPDKTAANIR 431
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 2e-19
Identities = 26/201 (12%), Positives = 63/201 (31%), Gaps = 16/201 (7%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G + T+ A+ + G K + V + +R +++ + G + V
Sbjct: 82 GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPA 141
Query: 162 YASLGEEALCYSLNETEVTTVIC-GSKELKKLVD-LSGQLDTVKHVICMDANIPSAVSSV 219
L + Y + + + ++C ++ + VD + + V
Sbjct: 142 THMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKA-------KVGGD 194
Query: 220 EQSGR---WKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
G K + V + D+ ++ ++SG+ G PK V + L
Sbjct: 195 VLEGWIDFRKELEESSPIFERPTGEVSTK---NEDICLVYFSSGTAGFPKMVEHDNTYPL 251
Query: 277 ATVSAVMTIVPDLGSKDVYLA 297
+ ++ ++
Sbjct: 252 GHILTAKYWQ-NVEDDGLHYT 271
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET---CAGGTFSEVDDSSVGRVGAP 477
+++ + G PL+ + G + +G+G TET A + E S+G+ P
Sbjct: 342 TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGK---P 398
Query: 478 LPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPN-----VTVGYFKNEEKTKEVYK 528
P I+L+D +G GEIVI + V Y K+ E+T+E +
Sbjct: 399 TPGYKIELMD-RDG------RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH 450
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 2e-14
Identities = 42/300 (14%), Positives = 81/300 (27%), Gaps = 57/300 (19%)
Query: 226 KITSFADVQILG------RENPVDADYPVSAD---VAVIMYTSGSTGLPKGVMMTHGNVL 276
+ + D++ R+ PV P + + G+TG PK V+ +
Sbjct: 58 DVKTINDLRQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIE 117
Query: 277 ATVSAVMTIVPDLG--SKDVYLAYLPL-AHVLELVAENLIAGVGSAIGYGTPLTLTDTSS 333
A +S M+ LA +P H++ + + A + + +
Sbjct: 118 ALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKER-ALRLGGMFFSIDIDPRWVKR 176
Query: 334 KIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAING 393
+ +G ++ V L
Sbjct: 177 SLSEGDTATVRKYTHHLVDQVQNTLMNQDIRF---------------------------- 208
Query: 394 SWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI--NICLGAPIGQG 451
+L LL +V + + I GG L+ D +FI I
Sbjct: 209 ----LVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSAS 264
Query: 452 YGLTETCAGGTFSEV-DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMP---RGEIVI 507
YG T + +S + P ++D + RG +++
Sbjct: 265 YGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVD-SITA-----QTVEYGERGNVIV 318
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 4e-13
Identities = 63/313 (20%), Positives = 94/313 (30%), Gaps = 90/313 (28%)
Query: 234 QILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGS 291
E P + + V D I++TSG+TG PKGV ++H N+L+ + ++ D+
Sbjct: 128 SAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPK 187
Query: 292 KDVYLAYLPL---AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL-- 346
+ LA P V+ + G L + K D L
Sbjct: 188 QPQMLAQPPYSFDLSVMYWAP---------TLALGGTLFA------LPKELVADFKQLFT 232
Query: 347 -----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGL 401
+ S P+ D A+ F +
Sbjct: 233 TIAQLPVGIWTSTPSFAD-----------------------------MAMLSDDFCQAKM 263
Query: 402 EKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAG 460
L G L+ T ++ A I YG TE
Sbjct: 264 PAL------------------THFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVA 305
Query: 461 GTFSEVDDSSVGRV-----GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGPNV 512
+ E+ V G P P S +ID + GEI++ GP V
Sbjct: 306 LSAIEITREMVDNYTRLPIGYPKPDSPTYIID-------EDGKELSSGEQGEIIVTGPAV 358
Query: 513 TVGYFKNEEKTKE 525
+ GY N EKT E
Sbjct: 359 SKGYLNNPEKTAE 371
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-12
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 17/211 (8%)
Query: 96 FEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRN 155
+E + + ++Y + +C FA+ L LG KK + VAI+ E VA+ C R
Sbjct: 97 WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156
Query: 156 VTVVTIYASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVD---LSGQLDTVKH 204
I+ EA+ + ++ VI + LKK VD + + +V+H
Sbjct: 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEH 216
Query: 205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
VI + S + E W + ++A+ P+ I+YTSGSTG
Sbjct: 217 VIVLK-RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPL-----FILYTSGSTGK 270
Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
PKGV+ T G L + V D D+Y
Sbjct: 271 PKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 3e-12
Identities = 58/315 (18%), Positives = 98/315 (31%), Gaps = 90/315 (28%)
Query: 231 ADVQILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289
D+ + N + ++ V D I+YTSGSTG PKGV +T+ +++ +L
Sbjct: 124 KDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKW-AVEDFNL 182
Query: 290 GSKDVYLAYLPL---AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346
+ V+L P V+++ ++ G L I K L
Sbjct: 183 QTGQVFLNQAPFSFDLSVMDIYP---------SLVTGGTLWA------IDKDMIARPKDL 227
Query: 347 -------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
V S P+
Sbjct: 228 FASLEQSDIQVWTSTPS------------------------------------------- 244
Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETC 458
L+ + + ++ L G L + ++ I A I YG TE
Sbjct: 245 ----FAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEAT 300
Query: 459 AGGTFSEVDDSSVGRV-----GAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGP 510
T V + + + G + ++ + P GEIVI GP
Sbjct: 301 VAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-------EDGTIAPDGEKGEIVIVGP 353
Query: 511 NVTVGYFKNEEKTKE 525
+V+VGY + E T++
Sbjct: 354 SVSVGYLGSPELTEK 368
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 8e-12
Identities = 78/437 (17%), Positives = 131/437 (29%), Gaps = 144/437 (32%)
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV-TVVTIYASL--G---------- 166
A L + G K VA+ +R++ V+ I L G
Sbjct: 503 ARRLQKHGAGKGSVVAL--------------YTKRSLELVIGILGVLKAGAAYLPVDPKL 548
Query: 167 -EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
E+ + Y L ++ ++ + ++ +L + +D + +
Sbjct: 549 PEDRISYMLADSAAACLLTHQEMKEQAAELPYTGT----TLFIDDQTRFEEQASD----- 599
Query: 226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285
+D + D A IMYTSG+TG PKG + TH N+ V
Sbjct: 600 ------------PATAIDPN-----DPAYIMYTSGTTGKPKGNITTHANIQGLVK--HVD 640
Query: 286 VPDLGSKDVYLAYLPLA---HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGD 342
+D +L+ A + A ++ L + + T D
Sbjct: 641 YMAFSDQDTFLSVSNYAFDAFTFDFYA---------SMLNAARLII------ADEHTLLD 685
Query: 343 ASVL-------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSW 395
L VM + A+ + + D GL R +
Sbjct: 686 TERLTDLILQENVNVMFATTALFNLL---TDAGEDWMKGL----------RCI------L 726
Query: 396 FGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLT 455
FG G E+ + K I+G + IN YG T
Sbjct: 727 FG--G-ERASVPHV--RKALRIMGPG----------------KLIN---------CYGPT 756
Query: 456 ETCAGGTFSEVDDSSVGR----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIA 508
E T V D +G P+ + + +++ P GE+ I+
Sbjct: 757 EGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN----EQS---QLQPFGAVGELCIS 809
Query: 509 GPNVTVGYFKNEEKTKE 525
G V+ GY + TKE
Sbjct: 810 GMGVSKGYVNRADLTKE 826
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 15/210 (7%)
Query: 96 FEKLHLGEYEWLTYGQAFETICNFASGL-AQLGHKKEERVAIFADTRAEWFVALQGCFRR 154
FE G+ +TY + E +C A L +G +K + VA++ E + L R
Sbjct: 103 FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162
Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVIC------GSK--ELKKLVDLS-GQLDTVKHV 205
++A +L +N+ + VI G K E K++VD + + V+HV
Sbjct: 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 222
Query: 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLP 265
+ +V+ T + PVD++ P+ ++YTSGSTG P
Sbjct: 223 LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL-----FLLYTSGSTGAP 277
Query: 266 KGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
KGV + L M D +DV+
Sbjct: 278 KGVQHSTAGYLLGALLTMRYTFDTHQEDVF 307
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-10
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 232 DVQILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290
V+ L A +AD +A I ++SG+TG PK + TH +
Sbjct: 145 PVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCL--GQSFLAFA 202
Query: 291 SKDVYLAYLPLA 302
+ +L PL+
Sbjct: 203 PQMRFLVNSPLS 214
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 4e-10
Identities = 66/435 (15%), Positives = 120/435 (27%), Gaps = 145/435 (33%)
Query: 124 AQLGHKKEERVAIFADTRAEWFVALQGCFRRNV-TVVTIYASL--G-----------EEA 169
++ +K+ + + +V+ S+ G E
Sbjct: 45 KRISGEKKSPILV--------------YGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSER 90
Query: 170 LCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITS 229
+ + + +I + V Q + + + + S
Sbjct: 91 IAKIIESSGAELLIHAAGLSIDAVGQQIQ------TVSAEELLENEGGS----------- 133
Query: 230 FADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289
+ + I+YTSGSTG PKGV ++ N+ + + +
Sbjct: 134 ---------VSQDQWVKE--HETFYIIYTSGSTGNPKGVQISAANLQSFTDW-ICADFPV 181
Query: 290 GSKDVYLAYLPLA---HVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346
++L P + V++L + G L + K VL
Sbjct: 182 SGGKIFLNQAPFSFDLSVMDLYP---------CLQSGGTLHC------VTKDAVNKPKVL 226
Query: 347 -------RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
V S P+ + ++
Sbjct: 227 FEELKKSGLNVWTSTPSFV-------------------QMC------------------- 248
Query: 400 GLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETC 458
L ++ + + G L + + A I YG TE
Sbjct: 249 -LMDPGFSQDLLPHADTFM--------FCGEVLPVSVAKALLERFPKAKIFNTYGPTEAT 299
Query: 459 AGGTFSEVDDSSVGR-----VGAPLPCSFIKLIDWPEGGYLTSDSPMPR---GEIVIAGP 510
T E+ + + R VG P I ++D P+P GEIVIAGP
Sbjct: 300 VAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD----EEG---QPLPEGEKGEIVIAGP 352
Query: 511 NVTVGYFKNEEKTKE 525
+V+ GY E T++
Sbjct: 353 SVSRGYLGEPELTEK 367
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 8e-10
Identities = 39/219 (17%), Positives = 68/219 (31%), Gaps = 65/219 (29%)
Query: 103 EYEWLTYGQ----AFETICN-FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV- 156
E E LTY + A N A + G K+ V I +++
Sbjct: 61 ENEQLTYHELNVKA-----NQLARIFIEKGIGKDTLVGI--------------MMEKSID 101
Query: 157 TVVTIYASL--G-----------EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVK 203
+ I A L G +E + Y L++++ ++ LV L +
Sbjct: 102 LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKH----LVHLIHNIQFNG 157
Query: 204 HVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTG 263
V + + N D+A ++YTSG+TG
Sbjct: 158 QVEIFEEDTIKIREG--------------------TNLHVPSKS--TDLAYVIYTSGTTG 195
Query: 264 LPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA 302
PKG M+ H + ++ KD + ++
Sbjct: 196 NPKGTMLEHKGISNLKVF-FENSLNVTEKDRIGQFASIS 233
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 231 ADVQILGRENPVDADYPVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSA-------V 282
+ ++ L ++ D + A ++YTSGSTG PKGV ++ N+ + A V
Sbjct: 155 SFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNV 214
Query: 283 MTIVPDLGSKDVYLAYLPL---AHVLEL 307
+LG +L H+ E+
Sbjct: 215 APKSLELGGVGKFLCLASRAFDVHIGEM 242
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 58/365 (15%), Positives = 117/365 (32%), Gaps = 83/365 (22%)
Query: 43 NCR----FTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEK 98
+C+ + + E + + G L T L+S++ E+ + E+
Sbjct: 34 DCKDVQDMPKSILSKEE----IDHIIMSKDAVSGTLRLFWT--LLSKQEEMVQ--KFVEE 85
Query: 99 LHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER----VAIFAD---TRAEWFVALQGC 151
+ Y++L +T S + ++ ++ +R +FA +R + ++ L+
Sbjct: 86 VLRINYKFLM--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 152 FR--RNVTVVTIY--ASLGEEALCYS-LNETEVTTVI-----------CGSKE--LKKLV 193
R V I G+ + +V + C S E L+ L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 194 DLSGQLDTVKHVIC-MDANIPSAVSSVEQSGR---------------------WKITSFA 231
L Q+D +NI + S++ R +F
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF- 262
Query: 232 DVQ----ILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI-V 286
++ + R V D+ +A I S L T V + + +
Sbjct: 263 NLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRP 315
Query: 287 PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL 346
DL ++V L P L ++AE++ G+ + + K+ + +VL
Sbjct: 316 QDL-PREV-LTTNPRR--LSIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVL 366
Query: 347 RPTVM 351
P
Sbjct: 367 EPAEY 371
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 68/211 (32%)
Query: 41 LRNCRFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVAD--NGRSFEK 98
L N V + F SCK +L L +R +V D + +
Sbjct: 250 LLN------VQNAK-----AWNAFNLSCK------IL----LTTRFKQVTDFLSAATTTH 288
Query: 99 LHLGEYEW-LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVT 157
+ L + LT + + + L + + D E L N
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY------LDCRPQ-------DLPRE---VLTT----NPR 328
Query: 158 VVTIYASLGEEALC----YS-LNETEVTTVICGS------KELKKL-VDLSGQLDTVKHV 205
++I A + L + +N ++TT+I S E +K+ LS V
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--------V 380
Query: 206 ICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
A+IP+ + S+ W +DV ++
Sbjct: 381 FPPSAHIPTILLSL----IWFDVIKSDVMVV 407
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 541 | |||
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.97 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.96 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.61 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 92.25 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.18 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 91.8 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 82.1 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 81.53 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 80.33 |
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-60 Score=509.23 Aligned_cols=393 Identities=22% Similarity=0.285 Sum_probs=325.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|.++++++|+++|++... ++. ..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~----------~~~--------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHhCCCCceEEEee----------ecC--------CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4799999999999999999986311 110 1147999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.+..++.++......
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ- 159 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBT-
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcccc-
Confidence 9999999999999999999999999999999999999999999999999998888887777778888888876543211
Q ss_pred ccccccCCeEEeeHHHHHhcccCC-----CC-CCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--CC
Q 009160 217 SSVEQSGRWKITSFADVQILGREN-----PV-DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PD 288 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~ 288 (541)
...++.++....... .. +.....++++++|+|||||||.||||+++|+++++.+......+ ..
T Consensus 160 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~ 230 (550)
T 3rix_A 160 ---------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 230 (550)
T ss_dssp ---------TBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred ---------CcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhcccc
Confidence 123455555433221 11 11223468899999999999999999999999999887766542 26
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 365 (541)
+.++|++++.+|++|++++...+.++..|+++++ +++..+++. ++++++|+++++|+++..+.+..
T Consensus 231 ~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~ 299 (550)
T 3rix_A 231 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKST 299 (550)
T ss_dssp CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHHHHHHCC
T ss_pred CCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCc
Confidence 7889999999999999999888889999999999 566667776 99999999999999999887632
Q ss_pred HHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhC
Q 009160 366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445 (541)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g 445 (541)
.... ...++||.+++||+++++++.+++++.++
T Consensus 300 ~~~~-----------------------------------------------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~ 332 (550)
T 3rix_A 300 LIDK-----------------------------------------------YDLSNLHEIASGGAPLSKEVGEAVAKRFH 332 (550)
T ss_dssp GGGG-----------------------------------------------SCCTTCCEEEECSSCCCHHHHHHHHHHTT
T ss_pred cccc-----------------------------------------------cCcccccEEEEecCCCCHHHHHHHHHHcC
Confidence 1100 01148999999999999999999999998
Q ss_pred Cc-ceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhH
Q 009160 446 AP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (541)
Q Consensus 446 ~~-v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~ 524 (541)
.. ++|.||+||+++.++.......+.+++|+|+|+++++|+|+++++.+ +.|+.|||+|+|+++++|||++|+.|+
T Consensus 333 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 409 (550)
T 3rix_A 333 LPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATN 409 (550)
T ss_dssp CSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCHHHHH
T ss_pred CCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCC---CCCCCeEEEEeCCCcchhhcCChhhhh
Confidence 75 89999999999888777766677899999999999999996667665 478999999999999999999999999
Q ss_pred hhhccCCCceEEcccc
Q 009160 525 EVYKVMLDRFMLMVAL 540 (541)
Q Consensus 525 ~~f~~d~dGw~~~~~~ 540 (541)
+.| +.||||+|+|+
T Consensus 410 ~~~--~~~g~~~TGDl 423 (550)
T 3rix_A 410 ALI--DKDGWLHSGDI 423 (550)
T ss_dssp HHB--CTTSCEEEEEE
T ss_pred hhc--CCCCCeecCcE
Confidence 999 89999999885
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=501.08 Aligned_cols=393 Identities=23% Similarity=0.303 Sum_probs=328.2
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++|+++|+.+. ++. + ..+..+++||+||.++++++|++|.+.|+++||+|+|
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~-----------~~~-~---~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 82 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISA-----------EPK-F---PSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV 82 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEE-----------SSC-C---CCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEeC-----------CCc-c---cccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 478999999999999999999874 210 0 0122358999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++....+.+........ +..++..+..
T Consensus 83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 156 (549)
T 3g7s_A 83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----- 156 (549)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence 9999999999999999999999999999999999999999999999999988877777665544 4556655431
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
..+++++...+...........++|+++|+|||||||.||||+++|+++++.+......+ ++.++|+++
T Consensus 157 ----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~ 225 (549)
T 3g7s_A 157 ----------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIV 225 (549)
T ss_dssp ----------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEE
T ss_pred ----------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEE
Confidence 123556655443322222223348999999999999999999999999999999888888 899999999
Q ss_pred EccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccC
Q 009160 297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (541)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 373 (541)
+.+|++|.+++...+.++..|+++++ +++..+.+. ++++++|+++++|+++..+.+........
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-- 292 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLESSNKT-- 292 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHSCCC--
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhhhhccc--
Confidence 99999999998888888999999988 677777777 99999999999999999998764332100
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH----hC---C
Q 009160 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC----LG---A 446 (541)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~----~g---~ 446 (541)
...+++|.+++||+++++++.+.+++. ++ +
T Consensus 293 -------------------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~ 329 (549)
T 3g7s_A 293 -------------------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRL 329 (549)
T ss_dssp -------------------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTC
T ss_pred -------------------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccc
Confidence 001389999999999999999999887 56 8
Q ss_pred cceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 447 PIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
+++|.||+||++.+++...... ...+++|+|+++++++|+|+++++.++ .|+.|||+|+|+++++|||++|+.|++
T Consensus 330 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~ 406 (549)
T 3g7s_A 330 RHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELG---VGESGEIVIRGPNIFKGYWKREKENQE 406 (549)
T ss_dssp EEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEEC---TTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred cccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCC---CCCceEEEEECcchhhhhCCChhhhhh
Confidence 9999999999998777655443 456899999999999999977887754 889999999999999999999999999
Q ss_pred hhccCCCc--eEEcccc
Q 009160 526 VYKVMLDR--FMLMVAL 540 (541)
Q Consensus 526 ~f~~d~dG--w~~~~~~ 540 (541)
.|..|.|| ||+|+|+
T Consensus 407 ~f~~~~~g~~~~~TGDl 423 (549)
T 3g7s_A 407 CWWYDEKGRKFFRTGDV 423 (549)
T ss_dssp SEEECTTCCEEEEEEEE
T ss_pred hhhccCCCCceEccCcE
Confidence 98656788 9999885
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-59 Score=498.85 Aligned_cols=386 Identities=24% Similarity=0.325 Sum_probs=318.9
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++|+++|+.+.+ + +..+.+||+||.++++++|++|+++|+++||+|++
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 77 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 77 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999999999998521 1 12357999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.++.++.+++....
T Consensus 78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (541)
T 1v25_A 78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE-- 155 (541)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT--
T ss_pred EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc--
Confidence 999999999999999999999999999999999999999999999999998877777766666777777776643210
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHH--HhhCCCCCCCcE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV--MTIVPDLGSKDV 294 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~ 294 (541)
...+++++...... .....++++++|+|||||||.||||+++|+++++..... ...+ .++++|+
T Consensus 156 ---------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~ 221 (541)
T 1v25_A 156 ---------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDV 221 (541)
T ss_dssp ---------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCE
T ss_pred ---------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCE
Confidence 11345555432211 134567899999999999999999999999998776653 2344 6889999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeC----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+++.+|++|++++...+.+++.|+++++. ++..+++. ++++++|+++++|+++..+.+.......
T Consensus 222 ~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 290 (541)
T 1v25_A 222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLESTGH 290 (541)
T ss_dssp EEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHHTC
T ss_pred EEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHH-----------HHhcCeeEEecchHHHHHHHhhhhccCC
Confidence 99999999999987778889999999983 55566666 9999999999999999999875432111
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
..+++|.+++||+++++++.+++ +.+|++++|
T Consensus 291 -----------------------------------------------~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~ 322 (541)
T 1v25_A 291 -----------------------------------------------RLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQ 322 (541)
T ss_dssp -----------------------------------------------CCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEE
T ss_pred -----------------------------------------------cchhccEEEECCCCCCHHHHHHH-HHhCCceee
Confidence 11389999999999999999999 667999999
Q ss_pred ccCcccccccccccCCCC-----------CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCC
Q 009160 451 GYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~ 519 (541)
.||+||++..++...... ...+++|+|+|+++++|+| ++++.++ .+.++.|||+|+||+++.|||++
T Consensus 323 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~-~~~~~~GEl~v~g~~v~~GY~~~ 400 (541)
T 1v25_A 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGN 400 (541)
T ss_dssp EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTC
T ss_pred cccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCC-CCCCcceEEEEeCcchhccccCC
Confidence 999999988766553321 1247899999999999999 7777654 22246899999999999999999
Q ss_pred chhhHhhhccCCCceEEcccc
Q 009160 520 EEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+.|++.| +.||||+|+|+
T Consensus 401 p~~t~~~f--~~~g~~~TGDl 419 (541)
T 1v25_A 401 EEATRSAL--TPDGFFRTGDI 419 (541)
T ss_dssp HHHHHTTB--CTTSCEEEEEE
T ss_pred hhhhhhhc--cCCCCeEcCCE
Confidence 99999999 77999999985
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-59 Score=500.44 Aligned_cols=388 Identities=23% Similarity=0.309 Sum_probs=319.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
.+...|+.++|.++++++|+++|+++.+ +|+ .+||+||.++++++|++|.+.|+++||+
T Consensus 18 ~p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 76 (536)
T 3ni2_A 18 IPKNLPLHSYVLENLSNHSSKPCLINGA----------NGD-----------VYTYADVELTARRVASGLNKIGIQQGDV 76 (536)
T ss_dssp CCSSCCHHHHHTTTGGGSTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCcHHHHHHHHhhcCCCceEEEECC----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 3455789999999999999999998621 233 7999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .. .++.++....
T Consensus 77 V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 154 (536)
T 3ni2_A 77 IMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSAPD 154 (536)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCCCT
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999998877766654322 12 3555543221
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC---CCCC
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---PDLG 290 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~ 290 (541)
...+++++...... ..+.....++|+++|+|||||||.||||+++|+++++.+....... ..+.
T Consensus 155 ------------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~ 221 (536)
T 3ni2_A 155 ------------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFH 221 (536)
T ss_dssp ------------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCC
T ss_pred ------------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCC
Confidence 12345555543222 2233456789999999999999999999999999999877765421 1578
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
++|++++.+|++|.+++.. ++.++..|+++++ +++..+++. ++++++|++.++|+++..+.+...
T Consensus 222 ~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 290 (536)
T 3ni2_A 222 SEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL-----------IEKYKVSIAPVVPPVMMSIAKSPD 290 (536)
T ss_dssp TTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHTCSC
T ss_pred CCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHHhCCeEEEccHHHHHHHHhCcc
Confidence 9999999999999999876 6778999999998 456666666 999999999999999998875321
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-C
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-G 445 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g 445 (541)
... ...++||.+++||+++++++.+++++.+ +
T Consensus 291 ~~~-----------------------------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 323 (536)
T 3ni2_A 291 LDK-----------------------------------------------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQ 323 (536)
T ss_dssp GGG-----------------------------------------------SCCTTCCEEEEESSCCCHHHHHHHHHHCTT
T ss_pred ccc-----------------------------------------------CCCccceEEEECCCCCCHHHHHHHHHHCCC
Confidence 100 0114899999999999999999999998 8
Q ss_pred CcceeccCccccccccccc-----CCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCc
Q 009160 446 APIGQGYGLTETCAGGTFS-----EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~ 520 (541)
++++|.||+||++.+++.. ...+.+.+++|+|+++++++|+|+++++.+ +.|+.|||+|+|+++++|||++|
T Consensus 324 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~p 400 (536)
T 3ni2_A 324 ARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL---PRNQPGEICIRGDQIMKGYLNDP 400 (536)
T ss_dssp SEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCH
T ss_pred CCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC---CCCCccEEEEeCcccchhhcCCh
Confidence 9999999999998765443 122346689999999999999996667665 48899999999999999999999
Q ss_pred hhhHhhhccCCCceEEcccc
Q 009160 521 EKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 521 ~~t~~~f~~d~dGw~~~~~~ 540 (541)
+.|++.| +.||||+|+|+
T Consensus 401 ~~t~~~~--~~~g~~~TGDl 418 (536)
T 3ni2_A 401 EATSRTI--DKEGWLHTGDI 418 (536)
T ss_dssp HHHHHHB--CTTSCEEEEEE
T ss_pred hHHHhhc--cCCCceEcccE
Confidence 9999999 89999999985
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-59 Score=497.62 Aligned_cols=386 Identities=19% Similarity=0.215 Sum_probs=320.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
+....|+.++|+++++++|+++|+.+ +++ .+||+||.++++++|++|+++|+++||+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~ 82 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIIC------------GER-----------QLSYIELDRLSTNLATRLAEKGLGKGDT 82 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEc------------CCC-----------ceeHHHHHHHHHHHHHHHHHCCCCCCCE
Confidence 34567999999999999999999986 343 7999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEe
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~ 208 (541)
|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.... ..+..+.........++..
T Consensus 83 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (544)
T 3o83_A 83 ALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILML 162 (544)
T ss_dssp EEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999987653 3334444445556666666
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 288 (541)
+..... ..+.++.........+.....++|+++|+|||||||.||||+++|+++.+.+......+ +
T Consensus 163 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~ 228 (544)
T 3o83_A 163 NHQATD-------------FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G 228 (544)
T ss_dssp TCCTTS-------------EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-T
T ss_pred cCCccc-------------cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-C
Confidence 543211 23444444333333333556789999999999999999999999999999999988888 8
Q ss_pred CCCCcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
++++|++++.+|++|.+++.. ++.++..|+++++ +++..+++. ++++++|+++++|+++..+.+
T Consensus 229 ~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSI-----------IQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHHCCCEEEechHHHHHHHh
Confidence 999999999999999999874 7788999999999 556666666 999999999999999999887
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
....... + .++||.+++||+++++++.+++++.
T Consensus 298 ~~~~~~~----------------~-------------------------------~~~lr~i~~gG~~l~~~~~~~~~~~ 330 (544)
T 3o83_A 298 KAAQYKD----------------Q-------------------------------IQSLKLLQVGGASFPESLARQVPEV 330 (544)
T ss_dssp HHTTTHH----------------H-------------------------------HTTCCEEEEESSCCCHHHHTHHHHH
T ss_pred chhhccc----------------c-------------------------------CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 5321110 0 1389999999999999999999999
Q ss_pred hCCcceeccCcccccccccccCCCC-CCCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
+|++++|.||+||++...+...... ...+++|+|+ ++++++|+| ++++.+ ++|+.|||+|+|+++++|||++|+
T Consensus 331 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~ 406 (544)
T 3o83_A 331 LNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYREV---PEGEIGMLATRGPYTFCGYYQSPE 406 (544)
T ss_dssp HCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSCCTTCHH
T ss_pred hCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCCcchhhcCChh
Confidence 9999999999999876544332211 2347899996 899999999 777765 488999999999999999999999
Q ss_pred hhHhhhccCCCceEEcccc
Q 009160 522 KTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~~ 540 (541)
.|++.| +.||||+|+|+
T Consensus 407 ~t~~~f--~~~g~~~TGDl 423 (544)
T 3o83_A 407 HNSQVF--DEDNYYYSGDL 423 (544)
T ss_dssp HHHHHB--CTTCCEEEEEE
T ss_pred hhhhhC--CCCCCeEcCCE
Confidence 999999 88999999985
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=494.91 Aligned_cols=389 Identities=23% Similarity=0.303 Sum_probs=318.9
Q ss_pred CCCCCHHH-HHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 55 EGISTLAE-LFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 55 ~~~~tl~~-~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
+...|+.+ +|.++++++ +++|+.+.. ++ +.+||+||.++++++|++|++.|+++||+
T Consensus 22 p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 79 (548)
T 2d1s_A 22 EGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDGR 79 (548)
T ss_dssp SSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred CCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34458999 899999999 999997520 22 37999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++....++.++....
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999887776665545554566776654311
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCCCCC------CCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhh--
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYP------VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI-- 285 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-- 285 (541)
. ....+++++.........+.... .++|+++|+|||||||.||||+++|+++++.+......
T Consensus 160 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~ 229 (548)
T 2d1s_A 160 Y----------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY 229 (548)
T ss_dssp B----------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT
T ss_pred c----------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh
Confidence 0 01234666654332110111111 23899999999999999999999999999988887665
Q ss_pred -CCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHH
Q 009160 286 -VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360 (541)
Q Consensus 286 -~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 360 (541)
+ +++++|++++.+|++|++++.. ++.++ .|+++++ +++..+++. ++++++|+++++|+++..
T Consensus 230 ~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ 296 (548)
T 2d1s_A 230 GN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLFAI 296 (548)
T ss_dssp SC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHHHH
T ss_pred cc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHHHH
Confidence 4 7789999999999999999887 45556 9999988 566667776 999999999999999998
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHH
Q 009160 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440 (541)
Q Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~ 440 (541)
+.+..... ....+++|.+++||+++++++.+++
T Consensus 297 l~~~~~~~-----------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~ 329 (548)
T 2d1s_A 297 LNKSELLN-----------------------------------------------KYDLSNLVEIASGGAPLSKEVGEAV 329 (548)
T ss_dssp HHHCSCGG-----------------------------------------------GSCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhCcccc-----------------------------------------------cccccceeEEEEcCccCCHHHHHHH
Confidence 87521100 0011389999999999999999999
Q ss_pred HHHh-CCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCC
Q 009160 441 NICL-GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (541)
Q Consensus 441 ~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~ 519 (541)
++.+ +++++|.||+||++..++.......+.+++|+|+|+++++|+|+++++.++ +|+.|||+|+|+++++|||++
T Consensus 330 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~ 406 (548)
T 2d1s_A 330 ARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLG---PNRRGEVCVKGPMLMKGYVNN 406 (548)
T ss_dssp HHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTC
T ss_pred HHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCC---CCCCeEEEECCHHHhhhhcCC
Confidence 9998 688999999999988776654444567899999999999999966777654 789999999999999999999
Q ss_pred chhhHhhhccCCCceEEcccc
Q 009160 520 EEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+.|++.| +.||||+|+|+
T Consensus 407 ~~~t~~~f--~~~g~~~TGDl 425 (548)
T 2d1s_A 407 PEATKELI--DEEGWLHTGDI 425 (548)
T ss_dssp HHHHHHHB--CTTSCEEEEEE
T ss_pred hHHhhhcc--cCCcEEEccCE
Confidence 99999999 88999999985
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-58 Score=491.97 Aligned_cols=379 Identities=22% Similarity=0.291 Sum_probs=311.4
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++|+++|+.+ .+ +.+||+||.++++++|++|.++|+++||+|+|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 80 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 33 37999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEecCC
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+..+...++.++.++..++.
T Consensus 81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (539)
T 1mdb_A 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (539)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence 99999999999999999999999999999999999999999999999987642 2333333445556666654432
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCC
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (541)
.. +.++.... ..+.......++|+++|+|||||||.||||+++|+++++.+......+ ++++
T Consensus 161 ~~----------------~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~ 222 (539)
T 1mdb_A 161 EE----------------FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH 222 (539)
T ss_dssp TT----------------SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred cc----------------hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCC
Confidence 10 11111111 111122445789999999999999999999999999999988887777 8899
Q ss_pred CcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
+|++++.+|++|.+++.. ++.+|+.|+++++ +++..+++. ++++++|+++++|+++..+.+...
T Consensus 223 ~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 291 (539)
T 1mdb_A 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS 291 (539)
T ss_dssp TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred CCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCcc
Confidence 999999999999999874 7888999999998 456666666 999999999999999999887543
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~ 446 (541)
.... ..++||.+++||+++++++.+++++.+|+
T Consensus 292 ~~~~-----------------------------------------------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 324 (539)
T 1mdb_A 292 SRRD-----------------------------------------------DLSSLQVLQVGGAKFSAEAARRVKAVFGC 324 (539)
T ss_dssp HCCC-----------------------------------------------CCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred ccCC-----------------------------------------------CccceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence 2111 11389999999999999999999999999
Q ss_pred cceeccCcccccccccccCCC-CCCCCCcCCCcCC-eEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhH
Q 009160 447 PIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPC-SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~-~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~ 524 (541)
+++|.||+||++...+..... ....+++|+|+++ .+++|+| ++++.+ +.|+.|||+|+|+++++|||++|+.|+
T Consensus 325 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 400 (539)
T 1mdb_A 325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDV---KPGETGHLLTRGPYTIRGYYKAEEHNA 400 (539)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred cEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCC---cCCCcceEEeeCcccchhhcCChhhhh
Confidence 999999999965433321111 1234789999975 5899999 677664 488999999999999999999999999
Q ss_pred hhhccCCCceEEcccc
Q 009160 525 EVYKVMLDRFMLMVAL 540 (541)
Q Consensus 525 ~~f~~d~dGw~~~~~~ 540 (541)
+.| +.||||+|+|+
T Consensus 401 ~~f--~~~g~~~TGDl 414 (539)
T 1mdb_A 401 ASF--TEDGFYRTGDI 414 (539)
T ss_dssp HHB--CTTSCEEEEEE
T ss_pred hhc--cCCCCeecCce
Confidence 999 78999999985
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-58 Score=491.28 Aligned_cols=388 Identities=15% Similarity=0.168 Sum_probs=319.1
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
.+.++++|+++|+++|+++|+.+.+ ++ ++.+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~---------~~---------g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l 116 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCD---------DY---------GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEE---------SS---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEc---------CC---------CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3445699999999999999998742 01 23468999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch--hHHHHhhcCCCCc-cEEEEecCCCc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQLDTV-KHVICMDANIP 213 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~-~~ii~~~~~~~ 213 (541)
+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+.. +.+.+....++.+ ..++.++....
T Consensus 117 ~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (580)
T 3etc_A 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196 (580)
T ss_dssp ECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC
T ss_pred EcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999987754 5555554444444 45565553311
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCC---CCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
. ...++.+...........+ ....++|+++|+|||||||.||||+++|.++++.+......+ .+.
T Consensus 197 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~ 264 (580)
T 3etc_A 197 E-----------GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVE 264 (580)
T ss_dssp T-----------TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCC
T ss_pred c-----------ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCC
Confidence 1 1244555554333222112 356789999999999999999999999999998877766666 888
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
++|++++.+|++|..+++. ++.++..|+++++ +++..+++. ++++++|+++++|+++..+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~ 333 (580)
T 3etc_A 265 DDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK-----------ASKYGVTTFCAPPTIYRFLIKE 333 (580)
T ss_dssp TTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHTS
T ss_pred CCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH-----------HHHHCCeEEEccHHHHHHHHhc
Confidence 9999999999999988886 6778999999987 455566666 9999999999999999988652
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~ 444 (541)
... ....++||.+++||+++++++.++|++.+
T Consensus 334 ~~~------------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 365 (580)
T 3etc_A 334 DLS------------------------------------------------HYNFSTLKYAVVAGEPLNPEVFNRFLEFT 365 (580)
T ss_dssp CC---------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHH
T ss_pred ccc------------------------------------------------cCCCccceEEEEccCCCCHHHHHHHHHHh
Confidence 100 01124899999999999999999999999
Q ss_pred CCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc-----CCcccccCCC
Q 009160 445 GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG-----PNVTVGYFKN 519 (541)
Q Consensus 445 g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g-----~~v~~GY~~~ 519 (541)
|++++|+||+||++..++.....+.+.+++|+|+|+++++|+| ++|+.+ ++|+.|||+|+| +++++|||++
T Consensus 366 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~---~~g~~GEl~v~~~~g~~~~~~~gY~~~ 441 (580)
T 3etc_A 366 GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRLC---EVGEEGEIVINTMEGKPVGLFVHYGKD 441 (580)
T ss_dssp SCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTCCCTTCCCEETTC
T ss_pred CCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCCC---CCCCceEEEEecCCCCCCeeeccccCC
Confidence 9999999999999887776665667789999999999999999 677765 488999999997 7899999999
Q ss_pred chhhHhhhccCCCceEEcccc
Q 009160 520 EEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+.|++.| .||||+|+|+
T Consensus 442 p~~t~~~f---~~gwy~TGDl 459 (580)
T 3etc_A 442 PERTEETW---HDGYYHTGDM 459 (580)
T ss_dssp HHHHHHHE---ETTEEEEEEE
T ss_pred HhHHHhhc---CCCEEecCcE
Confidence 99999999 4788888874
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-58 Score=485.35 Aligned_cols=386 Identities=19% Similarity=0.188 Sum_probs=299.8
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++|+++|+.+.+.. ++. .+..+.+||+||.++++++|++|++.|+ +||+|+|
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i 87 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI 87 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred cccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 468999999999999999999875311 111 2334689999999999999999999996 9999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccC---CCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCc--cEEEEecCC
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYA---SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV--KHVICMDAN 211 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~ii~~~~~ 211 (541)
+++|+++|+++++||+++|+++||+++ .++.+++.+++++++++++|++.+..+.+.+.....+.. ..++.++..
T Consensus 88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (480)
T 3t5a_A 88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167 (480)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence 999999999999999999999999999 788999999999999999999998877766654333221 123332211
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCC
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (541)
. . ............++++++|+|||||||.||||++||+++++.+......+ .+..
T Consensus 168 ~----------------------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~ 223 (480)
T 3t5a_A 168 D----------------------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADT 223 (480)
T ss_dssp C----------------------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTT
T ss_pred c----------------------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-cccc
Confidence 1 0 00111223456788999999999999999999999999999988887776 6666
Q ss_pred ------CcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHH
Q 009160 292 ------KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357 (541)
Q Consensus 292 ------~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 357 (541)
+|++++.+|++|++++.. ++.+++.|+++++. ++..+++. ++++++| +.++|++
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~~t-~~~~p~~ 291 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL-----------MASDFHA-FSAAPNF 291 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH-----------TTSSSEE-EEEECHH
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH-----------HHhhcee-EeeChHH
Confidence 999999999999999765 67889999999984 55555555 9999999 8899998
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHH
Q 009160 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ 437 (541)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 437 (541)
+..+.......... .....++||.+++||+++++++.
T Consensus 292 ~~~l~~~~~~~~~~-------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 292 AFELAARRTTDDDM-------------------------------------------AGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHHHCCTGGG-------------------------------------------TTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHHhhcCcccc-------------------------------------------cccchhhhheeeecCCcCCHHHH
Confidence 88876542111000 00112489999999999999999
Q ss_pred HHHHHHhC------CcceeccCcccccccccccCCCC-------------------------CCCCCcCCCcCCeEEEEE
Q 009160 438 RFINICLG------APIGQGYGLTETCAGGTFSEVDD-------------------------SSVGRVGAPLPCSFIKLI 486 (541)
Q Consensus 438 ~~~~~~~g------~~v~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~vG~p~~~~ev~iv 486 (541)
+++++.++ +.++|.||+||++..++...... .+.+++|+|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 99999874 47999999999998876654432 12368999999 999999
Q ss_pred ecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhc---------cCCCceEEcccc
Q 009160 487 DWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK---------VMLDRFMLMVAL 540 (541)
Q Consensus 487 d~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~---------~d~dGw~~~~~~ 540 (541)
|.++++.+ +.|+.|||+|+|+++++|||++|++|+++|. .+.||||+|+|+
T Consensus 408 d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDl 467 (480)
T 3t5a_A 408 DSDTCIEC---PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS 467 (480)
T ss_dssp ETTTTEEC---CTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEE
T ss_pred cCCCCcCC---CCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccce
Confidence 95446664 4789999999999999999999999999991 016789999985
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-58 Score=485.81 Aligned_cols=380 Identities=23% Similarity=0.274 Sum_probs=312.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...|+.++|+++++++|+++|+.+. + ..+.+||+||.++++++|++|.++|+++||+|
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~------------~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 71 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP------------S---------TDVRMTYAQMNALANRCADVLTALGIAKGDRV 71 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG------------G---------GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC------------C---------cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEE
Confidence 45679999999999999999999862 1 12479999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++....+.+..+....+....++....
T Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (517)
T 3r44_A 72 ALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---- 147 (517)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE----
T ss_pred EEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC----
Confidence 9999999999999999999999999999999999999999999999999999887777665544333222221110
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
..++.+..... ....+.....++|+++|+|||||||.||||+++|+++.+.+......+ +++++|+
T Consensus 148 ------------~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~ 213 (517)
T 3r44_A 148 ------------ADSLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDR 213 (517)
T ss_dssp ------------HHHHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCE
T ss_pred ------------cccHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCE
Confidence 01233333222 122233456789999999999999999999999999999999988888 8999999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
+++.+|++|++++...+.++..|+++++ +++..+++. ++++++|++.++|+++..+.+....
T Consensus 214 ~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~---- 278 (517)
T 3r44_A 214 LLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPEF---- 278 (517)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHHH----
T ss_pred EEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCccc----
Confidence 9999999999999886666669999988 566667776 9999999999999999988764221
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceec
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQG 451 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~ 451 (541)
.....+++|.+++||+++++++.+.+++. +++++|.
T Consensus 279 -------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~ 314 (517)
T 3r44_A 279 -------------------------------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQG 314 (517)
T ss_dssp -------------------------------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEE
T ss_pred -------------------------------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEe
Confidence 11122489999999999999999999887 9999999
Q ss_pred cCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc
Q 009160 452 YGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (541)
Q Consensus 452 YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~ 529 (541)
||+||+++.++..... ..+.+++|+|+++++++|+| +++...+ .| .|||+|+|+++++|||++|+.|++.|
T Consensus 315 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~---~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-- 387 (517)
T 3r44_A 315 YALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIRE---HG-EGEVVIKSDILLKEYWNRPEATRDAF-- 387 (517)
T ss_dssp EECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEES---SE-EEEEEEEETTSCSEETTCHHHHHHTE--
T ss_pred ecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCC---CC-CeEEEEeCcchhhhhCCChhhhHhhh--
Confidence 9999998877655443 34568999999999999999 6766544 55 79999999999999999999999999
Q ss_pred CCCceEEcccc
Q 009160 530 MLDRFMLMVAL 540 (541)
Q Consensus 530 d~dGw~~~~~~ 540 (541)
.+|||+|+|+
T Consensus 388 -~~g~~~TGDl 397 (517)
T 3r44_A 388 -DNGWFRTGDI 397 (517)
T ss_dssp -ETTEEEEEEE
T ss_pred -cCCCEeccee
Confidence 5788888874
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-58 Score=486.90 Aligned_cols=376 Identities=25% Similarity=0.353 Sum_probs=307.4
Q ss_pred HHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCc
Q 009160 62 ELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR 141 (541)
Q Consensus 62 ~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns 141 (541)
++|.+.++++|+++|+.... .+|+ ++||+||.++++++|++|.++|+++||+|+|+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~---------~~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 63 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET---------AAGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE---------TTCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred hHHHHHHHhCCCCceEEEec---------CCCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 57889999999999998532 1344 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccccccc
Q 009160 142 AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221 (541)
Q Consensus 142 ~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 221 (541)
++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+...... .++.++.....
T Consensus 64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------- 134 (503)
T 4fuq_A 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGRG------- 134 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSCS-------
T ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCccc-------
Confidence 999999999999999999999999999999999999999999998776555444332221 33433322110
Q ss_pred cCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccCh
Q 009160 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPL 301 (541)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl 301 (541)
.+.+... ............++|+++|+|||||||.||||+++|+++.+.+......+ +++++|++++.+|+
T Consensus 135 -------~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~ 205 (503)
T 4fuq_A 135 -------SLTDAAA-GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPI 205 (503)
T ss_dssp -------HHHHHHH-TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCS
T ss_pred -------ccchhhh-cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCCh
Confidence 1222221 11222233456789999999999999999999999999999999988888 89999999999999
Q ss_pred HHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhH
Q 009160 302 AHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK 377 (541)
Q Consensus 302 ~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 377 (541)
+|.+++.. .+.+++.|+++++ +++..+++. ++ ++|+++++|+++..+.+.....
T Consensus 206 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~~~--------- 263 (503)
T 4fuq_A 206 YHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPRLT--------- 263 (503)
T ss_dssp SSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTTCS---------
T ss_pred HHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCCcc---------
Confidence 99999765 6778999999888 566666666 66 8999999999999887532100
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccc
Q 009160 378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET 457 (541)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~ 457 (541)
....+++|.+++||+++++++.+.+++.+|++++|.||+||+
T Consensus 264 --------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~ 305 (503)
T 4fuq_A 264 --------------------------------------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTET 305 (503)
T ss_dssp --------------------------------------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTT
T ss_pred --------------------------------------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEccccc
Confidence 001148999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEc
Q 009160 458 CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLM 537 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~ 537 (541)
+..++.....+...+++|+|+++++++|+|+++++.++ .|+.|||+|+|+++++|||++|+.|++.| +.||||+|
T Consensus 306 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f--~~~g~~~T 380 (503)
T 4fuq_A 306 NMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELP---RGDIGMIEVKGPNVFKGYWRMPEKTKSEF--RDDGFFIT 380 (503)
T ss_dssp EECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCCCBTTCHHHHHHTB--CTTSCEEE
T ss_pred CcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCc---CCCceEEEEECCchhhhhcCChhhhHhhh--CCCCCeEc
Confidence 88765444445567899999999999999977777654 88999999999999999999999999999 78899999
Q ss_pred ccc
Q 009160 538 VAL 540 (541)
Q Consensus 538 ~~~ 540 (541)
+|+
T Consensus 381 GDl 383 (503)
T 4fuq_A 381 GDL 383 (503)
T ss_dssp EEE
T ss_pred cee
Confidence 885
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-57 Score=482.59 Aligned_cols=374 Identities=24% Similarity=0.311 Sum_probs=312.6
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++||++|+.+ +++ .+||+||.++++++|++|++.|+++||+|+|
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 61 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAI 61 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 444 7999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.+..++.+++....
T Consensus 62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 139 (509)
T 3ivr_A 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGP-- 139 (509)
T ss_dssp ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSS--
T ss_pred EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcC--
Confidence 999999999999999999999999999999999999999999999999998877756655667777788877653211
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
+.++.......+.......++|+++|+|||||||.||||+++|+++++.+.+....+ +++++|+++
T Consensus 140 -------------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l 205 (509)
T 3ivr_A 140 -------------FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNL 205 (509)
T ss_dssp -------------CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEE
T ss_pred -------------hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEE
Confidence 111222112223334566789999999999999999999999999999999988888 899999999
Q ss_pred EccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccC
Q 009160 297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (541)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 373 (541)
+.+|++|++++...+.++..|+..++ +++..+.+. ++++++|+++++|+++..+++....
T Consensus 206 ~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~------ 268 (509)
T 3ivr_A 206 GMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAAP------ 268 (509)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCCG------
T ss_pred EeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhcccc------
Confidence 99999999999887765555555544 566677777 9999999999999999998874310
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcceecc
Q 009160 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGY 452 (541)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~Y 452 (541)
.. .+++|.++.||++ ++.+.+++.+ +++++|.|
T Consensus 269 ---------------~~----------------------------l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y 302 (509)
T 3ivr_A 269 ---------------AQ----------------------------LASLRAVTGLDTP---ETIERFEATCPNATFWATF 302 (509)
T ss_dssp ---------------GG----------------------------GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred ---------------cc----------------------------hhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence 00 1389999999998 8888888888 99999999
Q ss_pred CcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCC
Q 009160 453 GLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLD 532 (541)
Q Consensus 453 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~d 532 (541)
|+||++++++.....+ ...++|+|+++++++|+| ++++.+ ++|+.|||+|+|+++++|||++|+.|++.| .|
T Consensus 303 G~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~~ 374 (509)
T 3ivr_A 303 GQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRPL---PPGEVGEIVLRGPTVFKGYWNNAAATQHAF---RN 374 (509)
T ss_dssp EEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCEETTCHHHHHHHT---GG
T ss_pred CccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCCC---CCCCceEEEEecCCccccccCCHHHhHHHh---hc
Confidence 9999998776654432 345699999999999999 667664 488999999999999999999999999999 47
Q ss_pred ceEEcccc
Q 009160 533 RFMLMVAL 540 (541)
Q Consensus 533 Gw~~~~~~ 540 (541)
|||+|+|+
T Consensus 375 g~~~TGDl 382 (509)
T 3ivr_A 375 GWHHTGDM 382 (509)
T ss_dssp GSEEEEEE
T ss_pred CCcccccE
Confidence 88888875
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-57 Score=478.54 Aligned_cols=372 Identities=21% Similarity=0.273 Sum_probs=298.8
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
|.|+.++|+++++++|+++|+.+.. .+ +.+||+||.++++++|++|++.|+++||+|+|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i 59 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999999999998620 13 37999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEE--CccchhHH-HHhhcCCCCccEEEEecCCCc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC--GSKELKKL-VDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~ii~~~~~~~ 213 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+ +.+..+.+ ... +.++ ++.
T Consensus 60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~------ 128 (504)
T 1t5h_X 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF------ 128 (504)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE------
T ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE------
Confidence 999999999999999999999999999999999999999999999999 76654444 221 1222 222
Q ss_pred cccccccccCCeEEeeHHHHHhccc----CCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGR----ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
++++..... ..+.+.....++++++|+|||||||.||||+++|+++.+.+......+ ++
T Consensus 129 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~ 191 (504)
T 1t5h_X 129 ----------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GL 191 (504)
T ss_dssp ----------------GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CC
T ss_pred ----------------ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CC
Confidence 222211110 111122345689999999999999999999999999999988887777 67
Q ss_pred --CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 290 --GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 290 --~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
+++|++++.+|++|++++.. ++.+++.|+++++ +++..+++. ++++++|+++++|+++..+.+
T Consensus 192 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 260 (504)
T 1t5h_X 192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAA 260 (504)
T ss_dssp CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHH
T ss_pred CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHh
Confidence 88999999999999999854 7888999999998 556666666 999999999999999999987
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
........ ...++||.+++||+++++++.+++++.
T Consensus 261 ~~~~~~~~---------------------------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 261 AAAHAGSS---------------------------------------------LKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHCCTTCC---------------------------------------------CCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhcccccc---------------------------------------------ccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 43110000 001389999999999999999999999
Q ss_pred hCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEc-cCCcccccCCCchh
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA-GPNVTVGYFKNEEK 522 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~-g~~v~~GY~~~~~~ 522 (541)
+++.++|.||+||++. +... . ..+.+++|.|.++++++|+| +++.....++.|+.|||+|+ |+++++|||++|+.
T Consensus 296 ~~~~~~~~YG~TE~~~-~~~~-~-~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~ 371 (504)
T 1t5h_X 296 LPGEKVNIYGTTEAMN-SLYM-R-QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371 (504)
T ss_dssp CCSEEEEEEEETTTEE-EEEE-E-SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred cCcceeeeeccccccc-cccc-c-CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchh
Confidence 9999999999999833 2222 1 34568999999999999999 55532233568899999999 99999999999999
Q ss_pred hHhhhccCCCceEEcccc
Q 009160 523 TKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 523 t~~~f~~d~dGw~~~~~~ 540 (541)
|++.| .||||+|+|+
T Consensus 372 t~~~f---~~g~~~TGDl 386 (504)
T 1t5h_X 372 TAEKL---QDGWYRTSDV 386 (504)
T ss_dssp HHHHE---ETTEEEEEEE
T ss_pred hhhhh---cCCccccCcE
Confidence 99999 5789998885
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=481.27 Aligned_cols=385 Identities=17% Similarity=0.232 Sum_probs=316.7
Q ss_pred CCCHHHHHHHHHHH-----cCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCC
Q 009160 57 ISTLAELFEQSCKE-----HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKK 130 (541)
Q Consensus 57 ~~tl~~~~~~~a~~-----~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~ 130 (541)
..++.++|++++++ +|+++|+.+.+ .+| +.+.+||+||.++++++|++|.+. |+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~---------~~g---------~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~ 98 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVN---------GKG---------KELMWNFRELSENSQQAANVLSGACGLQR 98 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEEC---------SSS---------CEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEc---------CCC---------ceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence 34578999999999 99999998731 012 235899999999999999999999 9999
Q ss_pred CCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecC
Q 009160 131 EERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA 210 (541)
Q Consensus 131 g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~ 210 (541)
||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+...++.++.++.+++
T Consensus 99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999887777776666777777777664
Q ss_pred CCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHH--HHHHHHhhCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA--TVSAVMTIVPD 288 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~ 288 (541)
.... ...+++++...... ..+.....++|+++|+|||||||.||||+++|+ ++. ..... ..+ +
T Consensus 179 ~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~ 243 (570)
T 3c5e_A 179 KSCD-----------GWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-G 243 (570)
T ss_dssp SCCT-----------TSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-S
T ss_pred cCcc-----------ccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-C
Confidence 2110 11346665543322 122345678999999999999999999999999 554 33333 445 7
Q ss_pred CCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 362 (541)
++++|++++.+|++|++++.. ++.++..|+++++ +++..+++. ++++++|+++++|+++..+.
T Consensus 244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-----------LSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHH
T ss_pred CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHH
Confidence 889999999999999999885 7788999999988 355556666 99999999999999999887
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHH
Q 009160 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~ 442 (541)
+.. ... ...+++|.+++||+++++++.+++++
T Consensus 313 ~~~---~~~---------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~ 344 (570)
T 3c5e_A 313 QQD---LSS---------------------------------------------YKFPHLQNCVTVGESLLPETLENWRA 344 (570)
T ss_dssp TSC---TTT---------------------------------------------CCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred hcc---ccc---------------------------------------------cccccceEEEEcCCcCCHHHHHHHHH
Confidence 530 000 01148999999999999999999999
Q ss_pred HhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEc-----cCCcccccC
Q 009160 443 CLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA-----GPNVTVGYF 517 (541)
Q Consensus 443 ~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~-----g~~v~~GY~ 517 (541)
.+|++++|.||+||++..++.......+.+++|+|+++++++|+| ++|+.+ +.|+.|||+|+ |++++.|||
T Consensus 345 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~---~~G~~GEl~v~~~~~~g~~v~~GY~ 420 (570)
T 3c5e_A 345 QTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGDIGIRVKPIRPIGIFSGYV 420 (570)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCBC---CTTCCEEEEEECSSBCCTTCCCEET
T ss_pred HhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCCC---CCCCCCeeEEeccCCCCchhhcccc
Confidence 899999999999999876665544455678999999999999999 777765 48899999999 999999999
Q ss_pred CCchhhHhhhccCCCceEEcccc
Q 009160 518 KNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 518 ~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++|+.|++.| .+|||+|+|+
T Consensus 421 ~~~~~t~~~f---~~~~~~TGDl 440 (570)
T 3c5e_A 421 DNPDKTAANI---RGDFWLLGDR 440 (570)
T ss_dssp TCHHHHHHTE---ETTEEEEEEE
T ss_pred CChhHhhhhh---cCCcccccee
Confidence 9999999998 4788888774
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-57 Score=488.85 Aligned_cols=368 Identities=18% Similarity=0.214 Sum_probs=297.8
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 009160 53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE 132 (541)
Q Consensus 53 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 132 (541)
+++...++.++|+++++++|+++|+.+ +++ .+||+||.++++++|++|.+.|+++||
T Consensus 34 ~~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd 90 (563)
T 1amu_A 34 EYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGIGKDT 90 (563)
T ss_dssp CCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCcHHHHHHHHHHHCCCCeEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 345557999999999999999999986 333 799999999999999999999999999
Q ss_pred EEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCC
Q 009160 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (541)
Q Consensus 133 ~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 212 (541)
+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+..+ .....++.++...
T Consensus 91 ~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~ 166 (563)
T 1amu_A 91 LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVEIFEEDT 166 (563)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEEECCCST
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc----cccCceeeecchh
Confidence 999999999999999999999999999999999999999999999999999998765433222 1112233322210
Q ss_pred ccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCC
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 292 (541)
+. . ...........++|+++|+|||||||.||||++||+++.+.+......+ +++++
T Consensus 167 --------------------~~-~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~ 223 (563)
T 1amu_A 167 --------------------IK-I-REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEK 223 (563)
T ss_dssp --------------------TT-T-SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTT
T ss_pred --------------------hc-c-ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCC
Confidence 00 0 0111112345678999999999999999999999999999888887777 88999
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
|++++++|++|..+++.++.+++.|+++++. ++..+.+. ++++++|+++++|+++..+...
T Consensus 224 d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~-- 290 (563)
T 1amu_A 224 DRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQY-----------INQKEITVITLPPTYVVHLDPE-- 290 (563)
T ss_dssp CEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHH-----------HHHTTCCEEEECHHHHTTSCTT--
T ss_pred CEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHH-----------HHHcCCcEEEeCHHHHHHHHhc--
Confidence 9999999999999998888899999999983 44455555 8999999999999988765321
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~ 446 (541)
..+++|.+++||+++++++.+++++ .+
T Consensus 291 ---------------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~ 317 (563)
T 1amu_A 291 ---------------------------------------------------RILSIQTLITAGSATSPSLVNKWKE--KV 317 (563)
T ss_dssp ---------------------------------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TS
T ss_pred ---------------------------------------------------ccccccEEEEEEecCCHHHHHHHHh--CC
Confidence 0138999999999999999999887 47
Q ss_pred cceeccCcccccccccccCCCC---CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 447 PIGQGYGLTETCAGGTFSEVDD---SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
+++|.||+||++..++...... ...+++|+|+++++++|+| ++++.+ +.|+.|||+|+|+++++|||++|+.|
T Consensus 318 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~pe~t 393 (563)
T 1amu_A 318 TYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLK---SVGEAGELCIGGEGLARGYWKRPELT 393 (563)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHH
T ss_pred eEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCC---CCCCcEEEEEechhhChhhCCCchhh
Confidence 9999999999987766543322 2457899999999999999 777665 47899999999999999999999999
Q ss_pred Hhhhcc----CCCceEEcccc
Q 009160 524 KEVYKV----MLDRFMLMVAL 540 (541)
Q Consensus 524 ~~~f~~----d~dGw~~~~~~ 540 (541)
+++|.. +.+|||+|+|+
T Consensus 394 ~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 394 SQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp HHHEEECSSSTTSEEEEEEEE
T ss_pred hhhcccCCCCCCCEEEecCCE
Confidence 999821 23579999885
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-57 Score=481.95 Aligned_cols=384 Identities=23% Similarity=0.253 Sum_probs=305.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|+++++ +|+++|+.+ +++ .+||+||.++++++|++|++.|+++||+|+|
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 78 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL 78 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3458999999999 999999985 333 7999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCc-cEEEEecCCCccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV-KHVICMDANIPSA 215 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~ 215 (541)
+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+..+.+.......+.. ..++.++.....
T Consensus 79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (529)
T 2v7b_A 79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE- 157 (529)
T ss_dssp ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence 999999999999999999999999999999999999999999999999988776666554444444 455554432110
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHH-HHHHHHHHhhCCCCCCCcE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV-LATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~d~ 294 (541)
......++++..... .........++|+++|+|||||||.||||+++|+++ .+........+ ++.++|+
T Consensus 158 --------~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~ 227 (529)
T 2v7b_A 158 --------PRLAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDV 227 (529)
T ss_dssp ----------CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCE
T ss_pred --------cccccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcE
Confidence 011124666654322 122234567899999999999999999999999999 55544444445 7889999
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEeC----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+++.+|++|.+++.. ++.++..|+++++. ++..+++. ++++++|+++++|+++..+.+....
T Consensus 228 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~-- 294 (529)
T 2v7b_A 228 VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR-----------LVEHRPTVFYGVPTLYANMLVSPNL-- 294 (529)
T ss_dssp EEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHH-----------HHHSCCSEEEECHHHHHHHHTCTTC--
T ss_pred EEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHH-----------HHHhCCEEEEecHHHHHHHHhCccc--
Confidence 999999999999876 56789999999873 55556666 9999999999999999888652100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcce
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG 449 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~ 449 (541)
.. ....++|.+++||+++++++.+++++.+|++++
T Consensus 295 ---~~------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~ 329 (529)
T 2v7b_A 295 ---PA------------------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEIL 329 (529)
T ss_dssp ---CC------------------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred ---cc------------------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Confidence 00 000279999999999999999999999999999
Q ss_pred eccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc
Q 009160 450 QGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~ 529 (541)
+.||+||++.+.+.........+++|+|+++++++|+| ++|+.++ +|+.|||+|+|++++.|||++|+.|++.|
T Consensus 330 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-- 403 (529)
T 2v7b_A 330 DGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVP---DGEVGDLYIKGPSAAVMYWNNREKSRATF-- 403 (529)
T ss_dssp EEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCBCC---TTSCEEEEEECTTCCCCBTTCHHHHHHHE--
T ss_pred eeEchhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCCCC---CCCccEEEEecCCcccccCCChHHHHHhh--
Confidence 99999999776655544456678999999999999999 7777654 78999999999999999999999999999
Q ss_pred CCCceEEcccc
Q 009160 530 MLDRFMLMVAL 540 (541)
Q Consensus 530 d~dGw~~~~~~ 540 (541)
.+|||+|+|+
T Consensus 404 -~~~~~~TGDl 413 (529)
T 2v7b_A 404 -LGEWIRSGDK 413 (529)
T ss_dssp -ETTEEEEEEE
T ss_pred -hcCCcccCce
Confidence 4788888874
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-57 Score=486.68 Aligned_cols=365 Identities=22% Similarity=0.238 Sum_probs=298.4
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...+++++|+++++++|+++|+.+ .++ .+||+||.++++++|++|+++|+++||+|+
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~ 129 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLH------------EAD-----------ELTYGALNERANRLAHRLVGLGVAPGTLVG 129 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEEC------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 457899999999999999999986 333 799999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+.... +.....++..+...
T Consensus 130 i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~--- 199 (570)
T 4gr5_A 130 VHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA--- 199 (570)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC------
T ss_pred EEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc---
Confidence 99999999999999999999999999999999999999999999999999765332 22222222211100
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 295 (541)
.............++|+++|+|||||||.||||+++|+++.+.+.. ...+ .++++|++
T Consensus 200 --------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~ 257 (570)
T 4gr5_A 200 --------------------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVF 257 (570)
T ss_dssp ------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEE
T ss_pred --------------------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEE
Confidence 0001111234567899999999999999999999999999876544 2334 78899999
Q ss_pred EEccChHHHHHHHHHHHHhhcCceEEeC-----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 296 LAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 296 l~~~pl~h~~~~~~~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
++.+|++|..+...++.+++.|+++++. ++..+.+. ++++++|++.++|+++..+.+.....
T Consensus 258 l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~-- 324 (570)
T 4gr5_A 258 LQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGEL-----------VARHGVTMLQLSASLFNFLVDEVPEA-- 324 (570)
T ss_dssp EECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHH-----------HHHHTCCEEEEEHHHHHHHHHHCGGG--
T ss_pred EEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhhchhh--
Confidence 9999999988777788899999999883 44455555 99999999999999999987642111
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcce
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIG 449 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~ 449 (541)
.++||.+++||+++++++.+.+.+.+ +++++
T Consensus 325 ------------------------------------------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~ 356 (570)
T 4gr5_A 325 ------------------------------------------------FEGVRYAITGGEPASVPHVAKARRDHPALRLG 356 (570)
T ss_dssp ------------------------------------------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEE
T ss_pred ------------------------------------------------CCCceEEEEecccCCHHHHHHHHHhCCCcEEE
Confidence 13899999999999999988888876 89999
Q ss_pred eccCcccccccccccCCC----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 450 QGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
|+||+||+++.++..... .....++|+|+++++++|+| ++++.+ +.|+.|||+|+|+++++|||++|+.|++
T Consensus 357 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~---~~G~~GEl~v~g~~v~~GY~~~~~~t~~ 432 (570)
T 4gr5_A 357 NGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPA---ANGALGELYVAGAGLAHGYVSRPALTAE 432 (570)
T ss_dssp EEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHHH
T ss_pred EeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCC---CCCCcEEEEEeecccchhcCCCchhhhc
Confidence 999999998876654322 23447799999999999999 777665 4789999999999999999999999999
Q ss_pred hhccC------CCceEEcccc
Q 009160 526 VYKVM------LDRFMLMVAL 540 (541)
Q Consensus 526 ~f~~d------~dGw~~~~~~ 540 (541)
+|..| .+|||+|+|+
T Consensus 433 ~f~~~~~~~~~~~~w~~TGDl 453 (570)
T 4gr5_A 433 RFVADPFAGPGGERMYRTGDL 453 (570)
T ss_dssp HEEECTTCCSSCCEEEEEEEE
T ss_pred ccccCCCCCCCCCEEEeCCCe
Confidence 99221 2489999885
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-56 Score=486.60 Aligned_cols=399 Identities=20% Similarity=0.252 Sum_probs=317.9
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.+++++|+++++++|+++|+++.. .. .++.+.+||+||.++++++|++|+++|+++||+|+|+
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~ 138 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEG-----------DD------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 138 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEEC-----------SS------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 468899999999999999998731 10 1234689999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhhcCCC--CccEEE
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLD--TVKHVI 206 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~ii 206 (541)
++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++... +.+.+.....+ .+..++
T Consensus 139 ~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 218 (652)
T 1pg4_A 139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218 (652)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred eCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999987643 23333333332 456777
Q ss_pred EecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH-HHhh
Q 009160 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTI 285 (541)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~ 285 (541)
+++....... . .......|+++...... ..++....++|+++|+|||||||.||||+++|++++..+.. ....
T Consensus 219 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 292 (652)
T 1pg4_A 219 VLKRTGSDID-W----QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV 292 (652)
T ss_dssp EECSSCCCCC-C----CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHH
T ss_pred EEeCCCCccc-c----cCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHh
Confidence 7654321100 0 00113457777653322 12334556899999999999999999999999999877643 4445
Q ss_pred CCCCCCCcEEEEccChHHHHHHH-HHHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHH
Q 009160 286 VPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357 (541)
Q Consensus 286 ~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 357 (541)
+ +++++|++++++|++|++++. .++.+|+.|+++++. ++..+++. ++++++|+++++|++
T Consensus 293 ~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~ 360 (652)
T 1pg4_A 293 F-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV-----------VDKHQVNILYTAPTA 360 (652)
T ss_dssp T-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH-----------HHHHTCSEEEECHHH
T ss_pred c-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH-----------HHHhCCeEEEeCHHH
Confidence 6 889999999999999999985 478899999999982 44555555 999999999999999
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHH
Q 009160 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ 437 (541)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 437 (541)
+..+.+....... ....++||.+++||+++++++.
T Consensus 361 ~~~l~~~~~~~~~---------------------------------------------~~~l~sLr~i~~gGe~l~~~~~ 395 (652)
T 1pg4_A 361 IRALMAEGDKAIE---------------------------------------------GTDRSSLRILGSVGEPINPEAW 395 (652)
T ss_dssp HHHHHTTGGGGTT---------------------------------------------TCCCTTCCEEEEESSCCCHHHH
T ss_pred HHHHHhcCccccc---------------------------------------------cCCcCceEEEEEecCCCCHHHH
Confidence 9988763211100 0112489999999999999999
Q ss_pred HHHHHHhC---CcceeccCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc--C
Q 009160 438 RFINICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--P 510 (541)
Q Consensus 438 ~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g--~ 510 (541)
+++++.+| +++++.||+||+++.++...+. ..+.+++|+|++|++++|+| ++|+.++ .|+.|||+|+| |
T Consensus 396 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~---~g~~GEl~i~g~~p 471 (652)
T 1pg4_A 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQE---GATEGNLVITDSWP 471 (652)
T ss_dssp HHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCC---SSEEEEEEECSCCT
T ss_pred HHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcC---CCceEEEEEccCCC
Confidence 99999888 9999999999998876655432 34669999999999999999 6777654 68899999999 7
Q ss_pred CcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 511 NVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 511 ~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++++|||++|+.|.+.|+...+|||+|+|+
T Consensus 472 ~~~~gY~~~~e~~~~~~~~~~~g~y~TGDl 501 (652)
T 1pg4_A 472 GQARTLFGDHERFEQTYFSTFKNMYFSGDG 501 (652)
T ss_dssp TCCCEETTCHHHHHHHHHSSSTTSEEEEEE
T ss_pred chhhhhcCCHHHHHhhhhhcCCCEEECCcE
Confidence 999999999999998874445788888774
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-57 Score=477.59 Aligned_cols=367 Identities=19% Similarity=0.217 Sum_probs=306.9
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEE
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVAIF 137 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~ 137 (541)
|+.++|+++|+++|+++|+.+ +++ ++||+||.++++++|++|.+. |.++|++|+++
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~ 58 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVY 58 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEE
T ss_pred cHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 789999999999999999986 444 799999999999999999885 88899999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++...... ...
T Consensus 59 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~----------------- 115 (511)
T 3e7w_A 59 GHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG----------------- 115 (511)
T ss_dssp ESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC-----------------
T ss_pred ecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc-----------------
Confidence 999999999999999999999999999999999999999999999997643210 000
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
......+++++...............++++++|+|||||||.||||+++|+++.+.+.+....+ .++++|++++
T Consensus 116 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~ 189 (511)
T 3e7w_A 116 -----QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLN 189 (511)
T ss_dssp -----CSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEE
T ss_pred -----cccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEE
Confidence 1123445666655433333333456789999999999999999999999999999999888888 8999999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
.+|++|.+++..++.++..|+++++. ++..+++. ++++++|+++++|+++..+.......
T Consensus 190 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~--- 255 (511)
T 3e7w_A 190 QAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEE-----------LKKSGLNVWTSTPSFVQMCLMDPGFS--- 255 (511)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH-----------HHHHCCSEEEECHHHHHHHHTSTTCS---
T ss_pred eCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhccccc---
Confidence 99999999998889999999999883 45556666 99999999999999998886531100
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCccee
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQ 450 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~ 450 (541)
....+++|.+++||+++++++.+.+++.+ +++++|
T Consensus 256 --------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 291 (511)
T 3e7w_A 256 --------------------------------------------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFN 291 (511)
T ss_dssp --------------------------------------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred --------------------------------------------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEe
Confidence 00114899999999999999999999998 899999
Q ss_pred ccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 451 GYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
.||+||+++.++..... .....++|+|+++++++|+| ++|+.+ ++|+.|||+|+|+++++|||++|+.|++
T Consensus 292 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 367 (511)
T 3e7w_A 292 TYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPL---PEGEKGEIVIAGPSVSRGYLGEPELTEK 367 (511)
T ss_dssp CCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCCBTTCHHHHHH
T ss_pred CcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCC---CCCCceEEEEecCccChhhCCCcccchh
Confidence 99999998876654322 23457899999999999999 677765 4889999999999999999999999999
Q ss_pred hhccCCCc--eEEcccc
Q 009160 526 VYKVMLDR--FMLMVAL 540 (541)
Q Consensus 526 ~f~~d~dG--w~~~~~~ 540 (541)
.| .+.+| ||+|+|+
T Consensus 368 ~f-~~~~g~~~~~TGDl 383 (511)
T 3e7w_A 368 AF-FSHEGQWAYRTGDA 383 (511)
T ss_dssp HE-EESSSSEEEEEEEE
T ss_pred hh-cCCCCCEEEeCCCe
Confidence 98 33344 7888875
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-57 Score=512.31 Aligned_cols=395 Identities=23% Similarity=0.283 Sum_probs=322.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 009160 53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE 132 (541)
Q Consensus 53 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 132 (541)
+++...|++++|.++++++|+++|+++.+ +|+ .+||+||.++++++|++|+++|+++||
T Consensus 56 ~~p~~~tl~~~l~~~a~~~pd~~Al~~~~----------~~~-----------~~TY~eL~~~~~~lA~~L~~~Gv~~gd 114 (979)
T 3tsy_A 56 YIPNHLSLHDYIFQNISEFATKPCLINGP----------TGH-----------VYTYSDVHVISRQIAANFHKLGVNQND 114 (979)
T ss_dssp CCCTTSCHHHHHTTTGGGTTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEECC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 44566899999999999999999998621 233 799999999999999999999999999
Q ss_pred EEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCC
Q 009160 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (541)
Q Consensus 133 ~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 212 (541)
+|+|+++|+++|+++++||+++|++++|++|.++++++.+++++++++++|++.+..+.+..+.... . ..++.+++..
T Consensus 115 ~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 192 (979)
T 3tsy_A 115 VVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-G-VVIVCIDDNE 192 (979)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-C-CEEEECCCCT
T ss_pred EEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-C-ceEEEeCCcc
Confidence 9999999999999999999999999999999999999999999999999999988776666554332 1 2355555432
Q ss_pred ccccccccccCCeEEeeHHHHHhcccC--CCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC---C
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---P 287 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~ 287 (541)
... ......+++++...... ...+.....++|+++|+|||||||.||||+++|+++++.+....... .
T Consensus 193 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 265 (979)
T 3tsy_A 193 SVP-------IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL 265 (979)
T ss_dssp TSC-------CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSS
T ss_pred ccc-------CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccc
Confidence 111 01122345554432221 12233456789999999999999999999999999999887765422 1
Q ss_pred CCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
.+.++|++++.+|++|++++.. ++.++..|+++++ +++..+++. ++++++|++.++|+++..+.+
T Consensus 266 ~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 334 (979)
T 3tsy_A 266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL-----------IQRCKVTVAPMVPPIVLAIAK 334 (979)
T ss_dssp CCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred cCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHH-----------HHHhCCeEEEcHHHHHHHHHh
Confidence 5788999999999999999976 6778999999999 456666666 999999999999999998876
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
...... ...++||.+++||+++++++.+++++.
T Consensus 335 ~~~~~~-----------------------------------------------~~l~~lr~~~~gg~~l~~~~~~~~~~~ 367 (979)
T 3tsy_A 335 SSETEK-----------------------------------------------YDLSSIRVVKSGAAPLGKELEDAVNAK 367 (979)
T ss_dssp CGGGGT-----------------------------------------------SCCTTCCEEEESSCCCCSSHHHHHHHH
T ss_pred CccccC-----------------------------------------------CCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 421110 011489999999999999999999999
Q ss_pred h-CCcceeccCcccccccccccC-----CCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccC
Q 009160 444 L-GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517 (541)
Q Consensus 444 ~-g~~v~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~ 517 (541)
+ +++++|.||+||++.+++... ....+.+++|+|+++++++|+|+++++.++ +|+.|||+|+|+++++|||
T Consensus 368 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~---~g~~GEl~i~g~~v~~GY~ 444 (979)
T 3tsy_A 368 FPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLS---RNQPGEICIRGHQIMKGYL 444 (979)
T ss_dssp CTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCC---TTCCEEEEEESTTSCSEET
T ss_pred CCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCC---CCCccEEEEECCCcccccc
Confidence 8 899999999999987665431 223456899999999999999966677654 7889999999999999999
Q ss_pred CCchhhHhhhccCCCceEEcccc
Q 009160 518 KNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 518 ~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++|+.|++.| +.||||+|+|+
T Consensus 445 ~~p~~t~~~f--~~~g~~~TGDl 465 (979)
T 3tsy_A 445 NNPAATAETI--DKDGWLHTGDI 465 (979)
T ss_dssp TCHHHHHHHB--CTTSCEEEEEE
T ss_pred CChhhhhhhc--cCCCcEEcCCE
Confidence 9999999999 89999999985
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-57 Score=480.55 Aligned_cols=369 Identities=19% Similarity=0.211 Sum_probs=301.7
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
|+.++|+++++++|+++|+.+ .++ .+||+||.++++++|++|.+.|+++|++|++++
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~ 58 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVW------------RDA-----------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYG 58 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred cHHHHHHHHHHHCCCceEEEe------------CCc-----------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Confidence 789999999999999999986 333 799999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++..... ...+ ..++.
T Consensus 59 ~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~--~~~~~----------- 119 (512)
T 3fce_A 59 HMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLP--VRIVS----------- 119 (512)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCS--SEEEE-----------
T ss_pred CCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccc--cceec-----------
Confidence 9999999999999999999999999999999999999999999999854321 0000 01111
Q ss_pred ccccCCeEEeeHHHHHhccc-CCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 219 VEQSGRWKITSFADVQILGR-ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
...+.++..... ..+.+.....++|+++|+|||||||.||||+++|+++++.+.+....+ +++++|++++
T Consensus 120 --------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~ 190 (512)
T 3fce_A 120 --------EDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLN 190 (512)
T ss_dssp --------THHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEE
T ss_pred --------hhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEE
Confidence 011222222111 122223456789999999999999999999999999999999888888 8999999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
.+|++|.+++..++.+++.|+++++. ++..+++. ++++++|+++++|+++..++......
T Consensus 191 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~--- 256 (512)
T 3fce_A 191 QAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS-----------LEQSDIQVWTSTPSFAEMCLMEASFS--- 256 (512)
T ss_dssp CSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH-----------HHHHCCCEEEECHHHHHHHTTSTTCS---
T ss_pred eCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhhcccc---
Confidence 99999999998889999999999984 44556666 99999999999999998876421100
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCccee
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQ 450 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~ 450 (541)
....+++|.+++||+++++++.+.+++.+ +++++|
T Consensus 257 --------------------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 257 --------------------------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp --------------------------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred --------------------------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 00124899999999999999999999998 899999
Q ss_pred ccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 451 GYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
.||+||+++.++..... .....++|+|+++++++|+| ++|+.++ +|+.|||+|+||+++.|||++|+.|++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~ 368 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAP---DGEKGEIVIVGPSVSVGYLGSPELTEK 368 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCC---TTSCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCC---CCCeEEEEEeccccChhhcCCchhhhh
Confidence 99999998877654332 23568899999999999999 7777654 789999999999999999999999999
Q ss_pred hhc-cCCCceEEcccc
Q 009160 526 VYK-VMLDRFMLMVAL 540 (541)
Q Consensus 526 ~f~-~d~dGw~~~~~~ 540 (541)
.|. .|.+|||+|+|+
T Consensus 369 ~f~~~~~~~~~~TGDl 384 (512)
T 3fce_A 369 AFTMIDGERAYKTGDA 384 (512)
T ss_dssp HEEEETTEEEEEEEEE
T ss_pred ccccCCCCEEEeCCce
Confidence 982 356789999985
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=485.56 Aligned_cols=363 Identities=15% Similarity=0.144 Sum_probs=295.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
....|++++|+++++++|+++|+.+ .+ +.+||+||.++++++|++|++.|+++|++|
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V 80 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRD------------RF-----------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEc------------CC-----------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457999999999999999999986 33 379999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+|+++|+++|+++++||+++|++++|++|.++.+++.++++++++++++++....... ..... +.
T Consensus 81 ~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~-~~------- 145 (620)
T 4dg8_A 81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPC-VP------- 145 (620)
T ss_dssp EEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCE-EE-------
T ss_pred EEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCce-ee-------
Confidence 9999999999999999999999999999999999999999999999999765432110 00100 00
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
+... .............++|++||+|||||||.||||+++|+++.+.+.. ...+ .+.++|+
T Consensus 146 ---------------~~~~--~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~ 206 (620)
T 4dg8_A 146 ---------------VRHL--PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMR 206 (620)
T ss_dssp ---------------GGGC--CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCE
T ss_pred ---------------eccC--CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCE
Confidence 0000 0001111223456899999999999999999999999999887655 3445 7889999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeC-----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+++.+|++|+.+++.++.+|+.|+++++. ++..+.+. ++++++|+++++|+++..+.+.....
T Consensus 207 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~Ps~~~~l~~~~~~~- 274 (620)
T 4dg8_A 207 FLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQL-----------IGERGADSAWLTASLFNTLVDLDPDC- 274 (620)
T ss_dssp EEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHH-----------HHTTCCCEEEEEHHHHHHHHHHCGGG-
T ss_pred EEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHH-----------HHHhCCcEEEccHHHHHHHHhcChhh-
Confidence 99999999999999999999999999883 44455555 99999999999999999887531100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcc
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v 448 (541)
.++||.+++||+++++++.+.+.+.+ ++++
T Consensus 275 -------------------------------------------------l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 305 (620)
T 4dg8_A 275 -------------------------------------------------LGGLRQLLTGGDILSVPHVRRALLRHPRLHL 305 (620)
T ss_dssp -------------------------------------------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEE
T ss_pred -------------------------------------------------CCCccEEEEEeCcCCHHHHHHHHHhCCCeEE
Confidence 13899999999999999888776665 8999
Q ss_pred eeccCcccccccccccCCC----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhH
Q 009160 449 GQGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~ 524 (541)
+|.||+||++..++..... .....++|+|++|++++|+| ++++.. ++.|+.|||||+|+++++||||+|+.|+
T Consensus 306 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~--~~~g~~GEl~i~G~~v~~GY~~~p~~t~ 382 (620)
T 4dg8_A 306 VNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEI--AEPDRAGEIVAFGAGLAQGYRNDAARTR 382 (620)
T ss_dssp EEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCBC--CSSSCCEEEEEEETTCCSEETTCHHHHH
T ss_pred EeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCCC--CCCCCceEEEEeccccccccCCChhhhh
Confidence 9999999999877654322 23457999999999999999 666653 3478899999999999999999999999
Q ss_pred hhhccCCC-------ceEEcccc
Q 009160 525 EVYKVMLD-------RFMLMVAL 540 (541)
Q Consensus 525 ~~f~~d~d-------Gw~~~~~~ 540 (541)
++| ..+ +||+|+|+
T Consensus 383 ~~f--~~~p~~~~~~~~yrTGDl 403 (620)
T 4dg8_A 383 ASF--VELPYRGRLLRAYRTGDR 403 (620)
T ss_dssp HHE--EEEEETTEEEEEEEEEEE
T ss_pred hhh--ccCCCCCCCceEEeCCCE
Confidence 999 332 67888774
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-56 Score=484.95 Aligned_cols=402 Identities=17% Similarity=0.169 Sum_probs=319.6
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVA 135 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~ 135 (541)
..++.++|+++++++|+++|+++.. .. .+..+.+||+||.++++++|+.|+ ++|+++||+|+
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~ 143 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFEG-----------DE------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVA 143 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEEC-----------SS------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred ccHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 3578999999999999999998731 10 123468999999999999999999 99999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhhcCCCCccEEE
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLDTVKHVI 206 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~ii 206 (541)
|+++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++... +.+.+....++.+++++
T Consensus 144 i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 223 (663)
T 1ry2_A 144 VYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVL 223 (663)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEE
T ss_pred EEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEE
Confidence 999999999999999999999999999999999999999999999999987643 23444455556677788
Q ss_pred EecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH-HHhh
Q 009160 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTI 285 (541)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~ 285 (541)
+++......... .......|+++..... ...++....++|+++|+|||||||.||||+++|++++..+.. ....
T Consensus 224 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 298 (663)
T 1ry2_A 224 VYRKTNNPSVAF----HAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT 298 (663)
T ss_dssp EECSSCCSSCCC----CSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred EEecCCCCcccc----CCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHh
Confidence 776432100000 0112345777765332 222334567899999999999999999999999998876654 3445
Q ss_pred CCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHH
Q 009160 286 VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357 (541)
Q Consensus 286 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 357 (541)
+ +++++|++++.+|++|+.+... ++.+|+.|+++++. ++..+++. ++++++|+++++|++
T Consensus 299 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~Ps~ 366 (663)
T 1ry2_A 299 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI-----------IDEHKVTQFYVAPTA 366 (663)
T ss_dssp S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH-----------HHHTTCSEEEECHHH
T ss_pred c-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH-----------HHHcCCCEEEecHHH
Confidence 6 8899999999999999999854 78899999999882 34455555 999999999999999
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHH
Q 009160 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ 437 (541)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 437 (541)
++.+.+....... ....++||.+++||+++++++.
T Consensus 367 ~~~l~~~~~~~~~---------------------------------------------~~~l~sLr~i~~gGe~l~~~~~ 401 (663)
T 1ry2_A 367 LRLLKRAGDSYIE---------------------------------------------NHSLKSLRCLGSVGEPIAAEVW 401 (663)
T ss_dssp HHHHTTSCTTSSS---------------------------------------------SCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHhcCccccc---------------------------------------------cCCcCceEEEEEEcCCCCHHHH
Confidence 9888652110000 0012489999999999999999
Q ss_pred HHHHHHhC---CcceeccCcccccccccccCC---CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCC-CCccEEEEcc-
Q 009160 438 RFINICLG---APIGQGYGLTETCAGGTFSEV---DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP-MPRGEIVIAG- 509 (541)
Q Consensus 438 ~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~-g~~GEi~v~g- 509 (541)
+++++.+| +++++.||+||+++.++...+ ...+++++|+|++|++++|+|.++|+.++ . |+.|||+|+|
T Consensus 402 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~---~~g~~Gel~i~g~ 478 (663)
T 1ry2_A 402 EWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN---TSHAEGVLAVKAA 478 (663)
T ss_dssp HHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEE---CSSCEEEEEESSC
T ss_pred HHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCC---CCCcceEEEEecC
Confidence 99999888 899999999999876665543 23467999999999999999943777664 4 7899999999
Q ss_pred -CCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 510 -PNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 510 -~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|++++|||++|+.|.+.|+.+.+|||+|+|+
T Consensus 479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDl 510 (663)
T 1ry2_A 479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 510 (663)
T ss_dssp CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEE
T ss_pred CCchhcccccChHHHHHhhhcCCCCEEEcCCE
Confidence 5899999999999999984445788888874
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-56 Score=482.27 Aligned_cols=384 Identities=19% Similarity=0.218 Sum_probs=314.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
++...|+.++|+++++ ||++|+.+ .++ .+||+||.++++++|++|++.|+++|++
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 77 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVID------------GER-----------QLSYRELNQAADNLACSLRRQGIKPGET 77 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEec------------CCc-----------eEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 4556799999999888 99999986 333 7999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEe
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~ 208 (541)
|+++++|+++++++++||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+..+.+...
T Consensus 78 V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (617)
T 3rg2_A 78 ALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL 157 (617)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeec
Confidence 99999999999999999999999999999999999999999999999999987653 2233333344555555555
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 288 (541)
++.... .+.+....... ........+++++||+|||||||.||||+++|+++++.+......+ +
T Consensus 158 ~~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~ 221 (617)
T 3rg2_A 158 NDSGEH--------------NLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-Q 221 (617)
T ss_dssp TCCSTT--------------BHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-T
T ss_pred cccccc--------------chhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-C
Confidence 443211 13333332211 2223456689999999999999999999999999999999988888 8
Q ss_pred CCCCcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
+.++|++++.+|++|.+++.. ++.+++.|+++++ .++..+.+. ++++++|++.++|+++..+.+
T Consensus 222 ~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 290 (617)
T 3rg2_A 222 FTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPL-----------IEKHQVNVTALVPPAVSLWLQ 290 (617)
T ss_dssp CCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHH
T ss_pred CCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHhCCcEEEcchHHHHHHHH
Confidence 999999999999999998875 7888999999999 344445555 999999999999999999887
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
......... ..+++|.+++||+++++++.+++.+.
T Consensus 291 ~~~~~~~~~---------------------------------------------~l~~lr~i~~gGe~l~~~~~~~~~~~ 325 (617)
T 3rg2_A 291 ALIEGESRA---------------------------------------------QLASLKLLQVGGARLSATLAARIPAE 325 (617)
T ss_dssp HHHTTCCTT---------------------------------------------TTTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred hhhcccccc---------------------------------------------cCCCccEEEEcCCcCCHHHHHHHHHH
Confidence 543321100 01389999999999999999999999
Q ss_pred hCCcceeccCcccccccccccCCCC-CCCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
+|++++|.||+||++...+...... ....++|+|+ ++.+++|+| ++++.+ +.|+.|||+|+|+++++||||+|+
T Consensus 326 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~ 401 (617)
T 3rg2_A 326 IGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPL---PQGEVGRLMTRGPYTFRGYYKSPQ 401 (617)
T ss_dssp TCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECSSSCSCCTTCHH
T ss_pred hCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCCC---CCCCceEEEecCccccchhcCChh
Confidence 9999999999999986554332211 1236799997 788999999 777665 488999999999999999999999
Q ss_pred hhHhhhccCCCceEEcccc
Q 009160 522 KTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~~ 540 (541)
.|+++| +.||||+|+|+
T Consensus 402 ~t~~~f--~~~~~yrTGDl 418 (617)
T 3rg2_A 402 HNASAF--DANGFYCSGDL 418 (617)
T ss_dssp HHHHHB--CTTSCEEEEEE
T ss_pred hhhhcc--CCCCceecCce
Confidence 999999 88999999985
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-56 Score=473.51 Aligned_cols=368 Identities=20% Similarity=0.211 Sum_probs=301.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+.++.++|+++++++|+++|+.+ .++ .+||+||.++++++|++|.+.|+++||+|++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i 59 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV 59 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 444 7999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+....+ .
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~---------------- 116 (521)
T 3l8c_A 60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E---------------- 116 (521)
T ss_dssp EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------
Confidence 99999999999999999999999999999999999999999999999987643211 0
Q ss_pred ccccccCCeEEeeHHHHHhcc--cCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhh--CCCCCCC
Q 009160 217 SSVEQSGRWKITSFADVQILG--RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI--VPDLGSK 292 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~~ 292 (541)
......+.++.... ...........++|+++|+|||||||.||||+++|+++++.+.+.... + .+.++
T Consensus 117 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~ 188 (521)
T 3l8c_A 117 -------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPKQ 188 (521)
T ss_dssp -------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCSS
T ss_pred -------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCCC
Confidence 12233344433221 111222345678999999999999999999999999999988877665 5 77899
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
|++++.+|++|..++..++.++..|+++++. ++..+.+. ++++++|++.++|+++..+.....
T Consensus 189 ~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 257 (521)
T 3l8c_A 189 PQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTT-----------IAQLPVGIWTSTPSFADMAMLSDD 257 (521)
T ss_dssp CEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHH-----------HHHSCCSEEEECHHHHHHHHTSTT
T ss_pred CeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHH-----------HHHcCCcEEEeCCCHHHHHhhhhc
Confidence 9999999999999988888899999999884 34445555 899999999999999987764211
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-C
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-G 445 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g 445 (541)
... ...+++|.+++||+++++++.+.+.+.+ +
T Consensus 258 ~~~-----------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~ 290 (521)
T 3l8c_A 258 FCQ-----------------------------------------------AKMPALTHFYFDGEELTVSTARKLFERFPS 290 (521)
T ss_dssp CST-----------------------------------------------TTCTTCCEEEECSSCCCHHHHHHHHHHCTT
T ss_pred ccc-----------------------------------------------ccCccceEEEEecccCCHHHHHHHHHHCCC
Confidence 000 0113899999999999999999999888 8
Q ss_pred CcceeccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCc
Q 009160 446 APIGQGYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~ 520 (541)
++++|.||+||+++.++..... ....+++|+|+++++++|+| ++|+.++ .|+.|||+|+||+++.|||++|
T Consensus 291 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~ 366 (521)
T 3l8c_A 291 AKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELS---SGEQGEIIVTGPAVSKGYLNNP 366 (521)
T ss_dssp CEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCC---TTCCEEEEEESTTSCSCBTTCH
T ss_pred ceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCC---CCCceEEEecccccChhhcCCc
Confidence 9999999999998876654322 23557899999999999999 7777654 7899999999999999999999
Q ss_pred hhhHhhhc-cCCCceEEcccc
Q 009160 521 EKTKEVYK-VMLDRFMLMVAL 540 (541)
Q Consensus 521 ~~t~~~f~-~d~dGw~~~~~~ 540 (541)
+.|++.|. .+.+|||+|+|+
T Consensus 367 ~~t~~~f~~~~~~~~~~TGDl 387 (521)
T 3l8c_A 367 EKTAEAFFTFKGQPAYHTGDI 387 (521)
T ss_dssp HHHHHHEEEETTEEEEEEEEE
T ss_pred hHhhccCcCCCCceeeeCCCE
Confidence 99999982 256789998875
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-55 Score=473.24 Aligned_cols=383 Identities=19% Similarity=0.209 Sum_probs=304.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
....|+.++|+++++++|+++|+.+.+ + +..+++||+||.++++++|++|.+.|+++||+|
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~-----------~--------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V 68 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLN-----------K--------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRV 68 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEE-----------T--------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEc-----------C--------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 356799999999999999999998742 1 122589999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCC---CHHHHHHHHhhcCceEEEECccchhHHHHhh-cCCCCccEEEEecC
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASL---GEEALCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDA 210 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~ 210 (541)
+++++|+++++++++||+++|++++|+++.+ +.+++.++++.+++++++++.+....+.... ...+....
T Consensus 69 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------ 142 (590)
T 3kxw_A 69 LLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLK------ 142 (590)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETT------
T ss_pred EEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccc------
Confidence 9999999999999999999999999999988 4578999999999999999987655443221 11111111
Q ss_pred CCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
+.....+++... ......+....++|+++|+|||||||.||||++||+++++.+.+....+ +++
T Consensus 143 --------------~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 206 (590)
T 3kxw_A 143 --------------IPAIALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMN 206 (590)
T ss_dssp --------------EEEEEGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCC
T ss_pred --------------cceeechhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCC
Confidence 111112221111 1112233456789999999999999999999999999999999988888 899
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 362 (541)
++|++++++|++|++++.. ++.+++.|+++++. +|..+++. ++++++|++.++|.++..+.
T Consensus 207 ~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKH-----------ITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHH-----------HHHHTCSEEEECTHHHHHHH
T ss_pred CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHH-----------HHHhCCeeecCChhHHHHHH
Confidence 9999999999999999987 78889999999984 45556666 99999999999999999887
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHH
Q 009160 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~ 442 (541)
+........ ....+++|.+++||+++++++.+.+++
T Consensus 276 ~~~~~~~~~--------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~ 311 (590)
T 3kxw_A 276 KRIREEKKE--------------------------------------------GLDLSSWVTAFNGAEPVREETMEHFYQ 311 (590)
T ss_dssp HHCCGGGGT--------------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHhhhhhcc--------------------------------------------CCCchhhHHHhhCCCCCCHHHHHHHHH
Confidence 753221110 001148999999999999999999999
Q ss_pred HhC------CcceeccCcccccccccccCCC---------------------------CCCCCCcCCCcCCeEEEEEecC
Q 009160 443 CLG------APIGQGYGLTETCAGGTFSEVD---------------------------DSSVGRVGAPLPCSFIKLIDWP 489 (541)
Q Consensus 443 ~~g------~~v~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~~~~ev~ivd~~ 489 (541)
.++ ++++|.||+||+++.++..... ....+++|+|+++ ++|+|.+
T Consensus 312 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~ 389 (590)
T 3kxw_A 312 AFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPD 389 (590)
T ss_dssp HHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTT
T ss_pred HHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCC
Confidence 873 4799999999998877654321 1123789999998 8899954
Q ss_pred CCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCC------Cc--eEEcccc
Q 009160 490 EGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVML------DR--FMLMVAL 540 (541)
Q Consensus 490 ~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~------dG--w~~~~~~ 540 (541)
++..+ +.|+.|||+|+||++++|||++|+.|+++| .. +| ||+|+|+
T Consensus 390 ~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f--~~~~~~~~~g~~~~~TGDl 443 (590)
T 3kxw_A 390 TLIPC---DFDQVGEIWVQSNSVAKGYWNQPEETRHAF--AGKIKDDERSAIYLRTGDL 443 (590)
T ss_dssp TCCBC---CTTBCEEEEEESTTSCCCBTTCHHHHHHHH--CBCCTTC---CCBEEEEEE
T ss_pred CCcCC---CCCCEEEEEEeCCcccccccCChhHHHHHH--hccccCCCCCCcEEecCcE
Confidence 46554 488999999999999999999999999999 32 35 9999985
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-56 Score=469.03 Aligned_cols=365 Identities=23% Similarity=0.316 Sum_probs=292.9
Q ss_pred CCCCHHHHHHHHHHHcCC-CCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 56 GISTLAELFEQSCKEHGD-KYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~-~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
++.++.++|.++++++|+ ++|+.+ +++ .+||+||.++++++|.+|. .|++|
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~-----~~~~V 71 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRF------------GER-----------SLTYAELAAAAGATAGRIG-----GAGRV 71 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEE------------TTE-----------EEEHHHHHHHHHHHHTTCC--------CE
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEE------------CCe-----------eeeHHHHHHHHHHHHhhcc-----CCCEE
Confidence 467899999999999988 999986 443 7999999999999998874 38899
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+... ......+.. +.++..
T Consensus 72 ~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~-~~~~~~--- 142 (505)
T 3nyq_A 72 AVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALER-VDVDVR--- 142 (505)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEE-EECCTT---
T ss_pred EEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccc-cccccc---
Confidence 99999999999999999999999999999999999999999999999999865210 001111111 111100
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
.....+.....++|+++|+|||||||.||||+++|+++.+.+......+ +++++|+
T Consensus 143 -----------------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~ 198 (505)
T 3nyq_A 143 -----------------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDV 198 (505)
T ss_dssp -----------------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCE
T ss_pred -----------------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcE
Confidence 0111223456789999999999999999999999999999999888888 8999999
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+++.+|++|..++.. ++.++..|+++++ +++..+.+. + ++++|+++++|+++..+.+.......
T Consensus 199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~ 266 (505)
T 3nyq_A 199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADPE 266 (505)
T ss_dssp EEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred EEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence 999999999999875 7889999999998 455555555 6 78999999999999998874321110
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
. ...+ +++|.+++||+++++++.+++++.+|++++|
T Consensus 267 ~-------------~~~l-------------------------------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~ 302 (505)
T 3nyq_A 267 L-------------AKAL-------------------------------AGARLLVSGSAALPVHDHERIAAATGRRVIE 302 (505)
T ss_dssp H-------------HHHH-------------------------------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEE
T ss_pred h-------------hccc-------------------------------ccceEEEECCCCCCHHHHHHHHHhcCCeeec
Confidence 0 0001 2899999999999999999999999999999
Q ss_pred ccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccC
Q 009160 451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVM 530 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d 530 (541)
.||+||++..++.........+++|+|+++++++|+| ++++.++..+.|+.|||+|+|++++.|||++|+.|++.| +
T Consensus 303 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f--~ 379 (505)
T 3nyq_A 303 RYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF--T 379 (505)
T ss_dssp EEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTB--C
T ss_pred ccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhh--c
Confidence 9999999887776655566779999999999999999 778776654558899999999999999999999999999 8
Q ss_pred CCceEEcccc
Q 009160 531 LDRFMLMVAL 540 (541)
Q Consensus 531 ~dGw~~~~~~ 540 (541)
.||||+|+|+
T Consensus 380 ~~g~y~TGDl 389 (505)
T 3nyq_A 380 EDGFFRTGDM 389 (505)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCCccCCe
Confidence 8999999885
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-55 Score=461.42 Aligned_cols=375 Identities=19% Similarity=0.229 Sum_probs=289.9
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
|+.++|+++++++|+++|+.+ .++ .+||+||.++++++|++|++. +||+|+|++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~ 55 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI 55 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence 567899999999999999985 333 799999999999999999986 899999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+.......... ...+..+..........
T Consensus 56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 131 (501)
T 3ipl_A 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLL--- 131 (501)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-----------------
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeeccccccc---
Confidence 99999999999999999999999999999999999999999999999775433211110 11111111100000000
Q ss_pred ccccCCeEEe-eHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 219 VEQSGRWKIT-SFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
......... ..+.+...............++|+++|+|||||||.||||+++|+++.+.+......+ +++++|++++
T Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~ 209 (501)
T 3ipl_A 132 -DNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLS 209 (501)
T ss_dssp -------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEE
T ss_pred -ccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEE
Confidence 000000000 0011110000001122345789999999999999999999999999999999888888 8999999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG 374 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 374 (541)
.+|++|++++..++.++..|+++++ +++..+++. ++++++|+++++|+++..+.+.....
T Consensus 210 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~------ 272 (501)
T 3ipl_A 210 VLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLHE------ 272 (501)
T ss_dssp CSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCCS------
T ss_pred eCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCCC------
Confidence 9999999999988889999999999 566667776 99999999999999999887642110
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCc
Q 009160 375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454 (541)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~ 454 (541)
..++|.+++||+++++++.+.+++ ++++++|.||+
T Consensus 273 --------------------------------------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~ 307 (501)
T 3ipl_A 273 --------------------------------------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGM 307 (501)
T ss_dssp --------------------------------------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEE
T ss_pred --------------------------------------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccc
Confidence 017999999999999999999987 49999999999
Q ss_pred ccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCC
Q 009160 455 TETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLD 532 (541)
Q Consensus 455 TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~d 532 (541)
||+++.++..... ..+.+++|+|+++++++|+|. + +++.|||+|+|+++++|||++++.|++ | .|
T Consensus 308 TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~--------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~---~~ 374 (501)
T 3ipl_A 308 TETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNP-N--------KEGHGELMIKGANVMNGYLYPTDLTGT-F---EN 374 (501)
T ss_dssp GGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESC-C--------SSCCEEEEEESTTSCSCCSBSTTCCCS-E---ET
T ss_pred cccccceeecCccccccCCCCCCCCCCCcEEEEecC-C--------CCCccEEEEeccchhhhhCcChhhcch-h---cC
Confidence 9998765544332 235689999999999999993 2 345799999999999999999999987 6 57
Q ss_pred ceEEcccc
Q 009160 533 RFMLMVAL 540 (541)
Q Consensus 533 Gw~~~~~~ 540 (541)
|||+|+|+
T Consensus 375 g~~~TGDl 382 (501)
T 3ipl_A 375 GYFNTGDI 382 (501)
T ss_dssp TEEEEEEE
T ss_pred CceecCCE
Confidence 88888774
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-54 Score=501.57 Aligned_cols=367 Identities=21% Similarity=0.241 Sum_probs=300.8
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.+++++|+++++++|+++|+.+ .++ .+||+||+++++++|+.|.+.|+++|++|+|+
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~ 520 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTY------------SGQ-----------TLSYRELDEEANRIARRLQKHGAGKGSVVALY 520 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEES------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred CCHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEE
Confidence 6899999999999999999985 333 79999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++++++++||+++|+++||++|.++.+++.+++++++++++|++.+....+. .++....++.+++..
T Consensus 521 ~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~----- 591 (1304)
T 2vsq_A 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT----- 591 (1304)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----
T ss_pred eCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----
Confidence 99999999999999999999999999999999999999999999999976543221 122223334333210
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
.. ......+.....++++|||+|||||||.||||+++|+++.+. .+....+ .++++|++++
T Consensus 592 --------------~~---~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~ 652 (1304)
T 2vsq_A 592 --------------RF---EEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLS 652 (1304)
T ss_dssp --------------GG---GSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEE
T ss_pred --------------cc---ccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEE
Confidence 00 001111233567899999999999999999999999999875 3333445 7889999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEeCCc------ccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGYGTP------LTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~~~~------~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
..|++|+.+.+.++.+|+.|+++++.+. ..+.+. ++++++|+++++|+++..+.+.....
T Consensus 653 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~-----------i~~~~vt~~~~~p~~~~~l~~~~~~~--- 718 (1304)
T 2vsq_A 653 VSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDL-----------ILQENVNVMFATTALFNLLTDAGEDW--- 718 (1304)
T ss_dssp CSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHH-----------HHHHTCCEEEEEHHHHHHHHHHCSHH---
T ss_pred ECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHH-----------HHHcCCcEEEccHHHHHHHHhhchhc---
Confidence 9999999999889999999999999544 344445 99999999999999999886531000
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCccee
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQ 450 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~ 450 (541)
+ +++|.+++||+++++++.+.+.+.+ +++++|
T Consensus 719 -------------------~----------------------------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n 751 (1304)
T 2vsq_A 719 -------------------M----------------------------KGLRCILFGGERASVPHVRKALRIMGPGKLIN 751 (1304)
T ss_dssp -------------------H----------------------------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEE
T ss_pred -------------------C----------------------------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEE
Confidence 0 1899999999999999999888877 478999
Q ss_pred ccCcccccccccccCCC----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhh
Q 009160 451 GYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~ 526 (541)
.||+||++..++..... .....++|+|++|++++|+| ++++.+ +.|..|||||+|+++++||||+|+.|+++
T Consensus 752 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~~T~~~ 827 (1304)
T 2vsq_A 752 CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQ---PFGAVGELCISGMGVSKGYVNRADLTKEK 827 (1304)
T ss_dssp EECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCCEEEEEEETTCCCCBTTCHHHHHHH
T ss_pred eEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCC---CCCCceEEEEeccccCccccCCcccchhh
Confidence 99999999877665432 23457899999999999999 666654 58899999999999999999999999999
Q ss_pred hcc----CCCceEEcccc
Q 009160 527 YKV----MLDRFMLMVAL 540 (541)
Q Consensus 527 f~~----d~dGw~~~~~~ 540 (541)
|.. +.++||+|+|+
T Consensus 828 f~~~p~~~g~~~yrTGDl 845 (1304)
T 2vsq_A 828 FIENPFKPGETLYRTGDL 845 (1304)
T ss_dssp EEECTTSTTCEEEEEEEE
T ss_pred hccCCCCCCCeeEecCCe
Confidence 932 23569999885
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=458.82 Aligned_cols=390 Identities=19% Similarity=0.191 Sum_probs=294.1
Q ss_pred ccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCC
Q 009160 52 TSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKE 131 (541)
Q Consensus 52 ~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g 131 (541)
..+....|+.++|+++|+++|+++|+.+.+-. .+. ..+..+.+||+||.++++++|+.|.+.|+ +|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~--------~~~-----~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~g 79 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVATGF--------LGS-----QKIVTEDWTYKKLNETANQVANLIIHASL-HG 79 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SS
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhccccc--------ccc-----cccccCCCCHHHHHHHHHHHHHHHHhcCC-CC
Confidence 34456688999999999999999999874200 000 01223689999999999999999999999 79
Q ss_pred CEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCC
Q 009160 132 ERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 132 ~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
|+|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+ .......++..+.
T Consensus 80 d~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~- 153 (562)
T 3ite_A 80 RAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN- 153 (562)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC-
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc-
Confidence 9999999999999999999999999999999999999999999999999999987654321 1111112221110
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC-----
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV----- 286 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----- 286 (541)
..+.+...... .........++++++|+|||||||.||||+++|+++.+.+......+
T Consensus 154 ----------------~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 216 (562)
T 3ite_A 154 ----------------QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAP 216 (562)
T ss_dssp ----------------HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCG
T ss_pred ----------------hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccc
Confidence 01222221111 11122345578899999999999999999999999998877654431
Q ss_pred --CCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 287 --PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 287 --~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
..+...+++++..|++|..++..++.++..|+++++.......+. +...++++++|+++++|++++.+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~-------~~~~i~~~~~t~~~~~P~~l~~~~~~ 289 (562)
T 3ite_A 217 KSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD-------LPRTFRELGVTHAGIVPSLLDQTGLV 289 (562)
T ss_dssp GGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS-------HHHHHHHTTCCEEEECHHHHHHHTCC
T ss_pred hhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH-------HHHHHHHcCCCEEEcCHHHHhhcccC
Confidence 147788999999999999998888899999999988543222111 12228999999999999987654221
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~ 444 (541)
. . ..++||.+++||+++++++.+++++.+
T Consensus 290 ~----~-----------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~ 318 (562)
T 3ite_A 290 P----E-----------------------------------------------DAPHLVYLGVGGEKMTPRTQQIWSSSD 318 (562)
T ss_dssp G----G-----------------------------------------------GSTTCCEEEEESSCCCHHHHHHHTTCS
T ss_pred c----c-----------------------------------------------ccCceEEEEEecCCCCHHHHHHHhhCC
Confidence 0 0 113899999999999999999999988
Q ss_pred CCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 445 GAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 445 g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
+++++|.||+||++..++..... ....+++|+|+++++++|+|.++++.+ ++|+.|||+|+|+++++|||++|+.|
T Consensus 319 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~~t 395 (562)
T 3ite_A 319 RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHV---KKGMAGELVIEGSLVANGYLNRPDAK 395 (562)
T ss_dssp SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBC---CTTSCEEEEEESTTSCCEESSCTTCC
T ss_pred CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCC---CCCCceEEEEeccccchhhCCCcccc
Confidence 99999999999998776654433 345688999999999999995455554 47899999999999999999999999
Q ss_pred HhhhccCCCceEEcccc
Q 009160 524 KEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 524 ~~~f~~d~dGw~~~~~~ 540 (541)
+..+ .|.+|||+|+|+
T Consensus 396 ~~~~-~~g~~w~~TGDl 411 (562)
T 3ite_A 396 GFCD-INGRKMYRTGDI 411 (562)
T ss_dssp SEEE-ETTEEEEEEEEE
T ss_pred cccc-CCCCEEEecCCE
Confidence 8654 333448888774
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=281.63 Aligned_cols=213 Identities=19% Similarity=0.223 Sum_probs=181.9
Q ss_pred CCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe-CCccc
Q 009160 249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY-GTPLT 327 (541)
Q Consensus 249 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~-~~~~~ 327 (541)
.||++||+|||||||.||||++||+++++.+......+ +++++|++++++|++|++++..++.++..|+++++ .....
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence 47899999999999999999999999999999988888 89999999999999999999988889999999988 33334
Q ss_pred ccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHH
Q 009160 328 LTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407 (541)
Q Consensus 328 l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (541)
+.+. ++++++|+++++|+++..+++......
T Consensus 115 ~~~~-----------i~~~~~t~~~~~P~~l~~ll~~~~~~~-------------------------------------- 145 (358)
T 4gs5_A 115 PLAG-----------LDHADFDFVAMVPMQLQSILENSATSG-------------------------------------- 145 (358)
T ss_dssp TTTT-----------CSSCCCSEEEECHHHHHHHHHCTTTGG--------------------------------------
T ss_pred HHHH-----------HHHhCCeEEEcChHHHHHhhccccccc--------------------------------------
Confidence 4555 899999999999999999876321110
Q ss_pred HHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEe
Q 009160 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLID 487 (541)
Q Consensus 408 ~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd 487 (541)
..++||.+++||+++++++.+++++. |++++|.||+||+++.++....+....+++|.|.|++++++.+
T Consensus 146 ----------~l~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~ 214 (358)
T 4gs5_A 146 ----------QVDRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE 214 (358)
T ss_dssp ----------GGGGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT
T ss_pred ----------cCCcceEEEEcccCCCchheeccccc-CceEEeccccccccceeecccccccccceeeccCCCeEEEecC
Confidence 01389999999999999999999874 9999999999999998888777777789999999999988743
Q ss_pred cCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEccccC
Q 009160 488 WPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVALR 541 (541)
Q Consensus 488 ~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~~ 541 (541)
.|||+++|+....|||. |.+..+.|+|||+++ ||+
T Consensus 215 --------------~Gel~~~g~~~~~g~~~----TGDlg~~d~~g~~~~-GR~ 249 (358)
T 4gs5_A 215 --------------RGCLHISGAVTNGQTVQ----TNDLVEIHGNAFQWI-GRA 249 (358)
T ss_dssp --------------TSEEEEESGGGTTCCEE----EEEEEEECSSEEEEE-EEG
T ss_pred --------------cCceEEecccccCccee----cCCccccccCceEEc-ccc
Confidence 49999999998888885 666667799997665 764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=267.06 Aligned_cols=204 Identities=17% Similarity=0.168 Sum_probs=162.1
Q ss_pred CCCCC-CCeEEEEeccCCCCCccEEEechHHHHHHHHHHH---hhCCCCCCCcEEEEccChHHHHHHH-HHHHHhhcCce
Q 009160 245 DYPVS-ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM---TIVPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSA 319 (541)
Q Consensus 245 ~~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~ 319 (541)
....+ +++++|+|||||||.||||+++|+++.+.+.... ..+ ++.++|++++.+|+.|..+.+ ..+.++..|++
T Consensus 80 ~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 80 VAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred ccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 34455 8999999999999999999999999987765553 334 788999999999997666555 46778999999
Q ss_pred EEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCC
Q 009160 320 IGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWF 396 (541)
Q Consensus 320 v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 396 (541)
+++ +++..+++. +++++||+++++|+++..+.+.........
T Consensus 159 ~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~------------------------ 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKF-----------ISDFKTTALHAIPSYAIRLAEVFQEEGIDP------------------------ 203 (436)
T ss_dssp EECCCSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHHHHHTTCCT------------------------
T ss_pred EEeCCCCCHHHHHHH-----------HHHHCCCEEEECHHHHHHHHHHHHHcCCCc------------------------
Confidence 988 455566666 999999999999999999987654321110
Q ss_pred CCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCC
Q 009160 397 GAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGA 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 476 (541)
..+++|.+++||+++++++.+++++.+|++++|.||+||+++.++..... .....|.
T Consensus 204 ---------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~ 260 (436)
T 3qov_A 204 ---------------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHF 260 (436)
T ss_dssp ---------------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEE
T ss_pred ---------------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEE
Confidence 01389999999999999999999999999999999999996653322221 1233677
Q ss_pred CcCCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 477 PLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 477 p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
|.++++++|+|+++++.++ +|+.|||+|+|.
T Consensus 261 ~~~~~~v~i~d~~~g~~~~---~g~~Gel~v~~~ 291 (436)
T 3qov_A 261 WEDCYLVEIIDPETGEPVP---EGEIGELVLTTL 291 (436)
T ss_dssp CTTTEEEEEECTTTCSBCS---TTCCEEEEEEES
T ss_pred ccCceEEEEEECCCCCCCC---CCCceEEEEecc
Confidence 8889999999977787654 788999999984
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=264.05 Aligned_cols=218 Identities=18% Similarity=0.137 Sum_probs=166.5
Q ss_pred eeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh---hCCCCCCCcEEEEccCh-HH
Q 009160 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPL-AH 303 (541)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~h 303 (541)
.+.+++.... +.......++++++|+|||||||.||||+++|+++...+..... .+ +++++|++++.+|+ .|
T Consensus 71 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~ 146 (437)
T 2y27_A 71 TTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLF 146 (437)
T ss_dssp BCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSS
T ss_pred CCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEccccccc
Confidence 3455555432 22233456789999999999999999999999999877654432 45 78899999999998 68
Q ss_pred HHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHH
Q 009160 304 VLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLF 380 (541)
Q Consensus 304 ~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~ 380 (541)
..++...+.++..|+++++ +++..+++. +++++||+++++|+++..+.+.........
T Consensus 147 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-------- 207 (437)
T 2y27_A 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQL-----------IQDFRPDIIMVTPSYMLSIADEIERQGLDP-------- 207 (437)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG--------
T ss_pred ccchHHHHHHHHcCCEEEeCCCCCHHHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------
Confidence 8887777888999999987 455666666 999999999999999999987543211100
Q ss_pred HHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCccccccc
Q 009160 381 DLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460 (541)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~ 460 (541)
..+++|.+++||+++++++.+++++.+|++++|.||+||+++.
T Consensus 208 -------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~ 250 (437)
T 2y27_A 208 -------------------------------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGP 250 (437)
T ss_dssp -------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEE
T ss_pred -------------------------------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCC
Confidence 0138999999999999999999999899999999999998543
Q ss_pred -ccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 461 -GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 461 -~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
++..... .....|.|.++++++|+|+++|+.++ +|+.|||+|+|.
T Consensus 251 ~~~~~~~~--~~~g~~~~~~~~~~~i~d~~~g~~~~---~g~~Gel~v~~~ 296 (437)
T 2y27_A 251 GVASECVE--TKDGPTIWEDHFYPEIIDPETGEVLP---DGELGELVFTSL 296 (437)
T ss_dssp EEEECCTT--TCSSCEECTTTEEEEEECTTTCCBCC---TTCCEEEEEEES
T ss_pred eeEEecCC--CCCceeEccCceEEEEEcCCCCCCCC---CCCccEEEEecC
Confidence 3322221 11125667789999999965676654 788999999983
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=262.57 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=166.2
Q ss_pred EeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh---hCCCCCCCcEEEEccCh-H
Q 009160 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPL-A 302 (541)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 302 (541)
+.+.+++.... +.......++++++|+|||||||.||||+++|+++...+..... .+ +++++|++++.+|+ .
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcc
Confidence 34455655322 22223456789999999999999999999999998876554433 45 78899999999999 5
Q ss_pred HHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHH
Q 009160 303 HVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKL 379 (541)
Q Consensus 303 h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l 379 (541)
|..++...+.++..|+++++ +++..+++. +++++||+++++|+++..|.+.........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------- 209 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQL-----------IRDFEPKIILVTPSYMLNLIDEMVRQGMDP------- 209 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEECHHHHHHHHHHHHHcCCCc-------
Confidence 77777777888999999988 455566666 999999999999999999987543221100
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccc
Q 009160 380 FDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459 (541)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~ 459 (541)
..+++|.+++||+++++++.+++++.+|++++|.||+||+++
T Consensus 210 --------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g 251 (443)
T 2y4o_A 210 --------------------------------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMG 251 (443)
T ss_dssp --------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTE
T ss_pred --------------------------------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcC
Confidence 013899999999999999999999999999999999999855
Q ss_pred c-ccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 460 G-GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 460 ~-~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
. +...... . ....+.|.++++++|+|+++|+.++ +|+.|||+|+|.
T Consensus 252 ~~~~~~~~~-~-~~g~~~~~~~~~~~i~d~~~g~~~~---~G~~Gel~v~~~ 298 (443)
T 2y4o_A 252 PGVACECVE-T-KDGPVIWEDHFYPEIIDPVTGEVLP---DGSQGELVFTSL 298 (443)
T ss_dssp EEEEEECTT-T-CCSEEECTTTEEEEEECTTTCCBCC---TTCCEEEEEEES
T ss_pred CeEEeccCC-C-CCceEEccCCeEEEEEcCCCCCCCC---CCCceEEEEeCC
Confidence 3 3322211 1 1125557789999999965677654 788999999983
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-30 Score=261.96 Aligned_cols=223 Identities=15% Similarity=0.125 Sum_probs=173.0
Q ss_pred CCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccCh-HHHHHHHHHHHHhhcCceEEe-
Q 009160 247 PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYLPL-AHVLELVAENLIAGVGSAIGY- 322 (541)
Q Consensus 247 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~v~~- 322 (541)
..++++++|+|||||||.||||+++|+++.+.+.+....+ .++.++|++++.+|+ +|++++...+.++..|+.++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4678999999999999999999999999999888654322 267899999999999 999999888888999994443
Q ss_pred -CCcc-----------------------cccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHH
Q 009160 323 -GTPL-----------------------TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKK 378 (541)
Q Consensus 323 -~~~~-----------------------~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 378 (541)
++|. .+.+. ++++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~---------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT-----------LMNQDIRFLVTTPPVLRELLKRPEVV---------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHHSCEEEEEECHHHHHHHTTCHHHH----------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHH-----------HHhCCCCEEEeCHHHHHHHHhhhhhh----------
Confidence 4444 33334 89999999999999999987642100
Q ss_pred HHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHH-HHh-CCcceeccCccc
Q 009160 379 LFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN-ICL-GAPIGQGYGLTE 456 (541)
Q Consensus 379 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~-~~~-g~~v~~~YG~TE 456 (541)
..++ +++|.+++||+++++++.++++ +.| +++++|.||+||
T Consensus 227 ------~~~~-------------------------------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE 269 (369)
T 3hgu_A 227 ------LQMK-------------------------------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269 (369)
T ss_dssp ------HHHH-------------------------------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGG
T ss_pred ------cccc-------------------------------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchh
Confidence 0001 2899999999999999999999 888 899999999999
Q ss_pred ccccccccCCCCCCCCCcCCC------cCCeEEEEEecCCCCccCCCCCCCccEEEEccC---CcccccCCCchhhHhhh
Q 009160 457 TCAGGTFSEVDDSSVGRVGAP------LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 457 ~~~~~~~~~~~~~~~~~vG~p------~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~---~v~~GY~~~~~~t~~~f 527 (541)
+++++.... ..++|+| +++++++|+|+++++.++ +|+.|||+|++. ..+.+|...+..+...
T Consensus 270 ~~~~~~~~~-----~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp---~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~- 340 (369)
T 3hgu_A 270 ALGVSRSLL-----ITSESQQVIYDSFSPFITYDVVDSITAQTVE---YGERGNVIVTHLSPWAFYPRVAERDTAIRLP- 340 (369)
T ss_dssp GTEEEEECC-----BCTTCSSCEEECCTTTEEEEEECTTTCSBCC---TTCEEEEEEEEEETTEEEEEEEEEEEEEEEC-
T ss_pred hhcceeccc-----cccCCCcccccCCCCCeEEEEECCCCCcCCC---CCCceEEEEEEcCcccccccccCCceEEEec-
Confidence 887653221 1258999 999999999955777654 889999999873 3467898877776654
Q ss_pred ccCCCceEEcc
Q 009160 528 KVMLDRFMLMV 538 (541)
Q Consensus 528 ~~d~dGw~~~~ 538 (541)
+.+||++..
T Consensus 341 --~~~g~~~d~ 349 (369)
T 3hgu_A 341 --GVSGFAGDR 349 (369)
T ss_dssp --CSTTCSSCE
T ss_pred --CCCCCcCcc
Confidence 378887653
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=92.61 E-value=1.5 Score=44.24 Aligned_cols=107 Identities=12% Similarity=-0.019 Sum_probs=82.3
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCc--HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..++++.. .++++...+++.++++
T Consensus 109 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 187 (443)
T 2y4o_A 109 VVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKI 187 (443)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcE
Confidence 34689999988888888888788999999999988853 44455678888899998887764 7889999999999999
Q ss_pred EEECccchhHHHHhh--cC----CCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLS--GQ----LDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~--~~----~~~~~~ii~~~~~ 211 (541)
++.....+..+.+.. .. .+.++.+++-.+.
T Consensus 188 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 188 ILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 999988776655432 11 2567777776544
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.17 Score=52.83 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=34.3
Q ss_pred eEEeeHHHHHhcccCC-CCCC-CCCCCCCeEEEEeccCCC-CCccEEEechHHHHHH
Q 009160 225 WKITSFADVQILGREN-PVDA-DYPVSADVAVIMYTSGST-GLPKGVMMTHGNVLAT 278 (541)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~a~i~~TSGTT-G~PKgV~~th~~l~~~ 278 (541)
+.+.+|+++...-... .-+. ....++.+.+..-||||| |.+|-+.+|...+-..
T Consensus 66 VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 66 VPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp SCCBCHHHHHHHHHHHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 4566777764211100 0011 123456677899999999 7799999999987553
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=1.7 Score=43.77 Aligned_cols=107 Identities=11% Similarity=0.021 Sum_probs=82.4
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCC--cHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+..++++.. .++++...+++.++++
T Consensus 107 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 185 (437)
T 2y27_A 107 VVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDI 185 (437)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCE
Confidence 3568999998888888887878899999999998885 344455678889999999877654 7889999999999999
Q ss_pred EEECccchhHHHHhhc--C----CCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLSG--Q----LDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~~--~----~~~~~~ii~~~~~ 211 (541)
++..+..+..+.+... . ...++.+++-.+.
T Consensus 186 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 186 IMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 9999887766654321 1 2567777775544
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=1.5 Score=44.05 Aligned_cols=107 Identities=11% Similarity=-0.052 Sum_probs=84.0
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCC--cHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+..++..+...++.++|++..+.+- ....+..+++++..|+..++.++. .++.+...+++.++++
T Consensus 103 ~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 181 (436)
T 3qov_A 103 VIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTA 181 (436)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCE
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCE
Confidence 4578999999988888888888899999999998874 345556678889999998877654 6789999999999999
Q ss_pred EEECccchhHHHHhh--c----CCCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLS--G----QLDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~--~----~~~~~~~ii~~~~~ 211 (541)
++.....+..+.+.. . .+..++.+++-.+.
T Consensus 182 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 182 LHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp EECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 999988776665432 1 14567777776554
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=82.10 E-value=12 Score=38.79 Aligned_cols=106 Identities=15% Similarity=0.054 Sum_probs=75.8
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH--HHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+......+...++.+++++..+++-... +...+++++ .|+..+.++ ...++.+...+++.++++
T Consensus 209 gv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 286 (548)
T 2d1s_A 209 GVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTS 286 (548)
T ss_dssp CEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEE
T ss_pred EEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcE
Confidence 3578999988776655544333578899999888876532 333456777 999888775 567899999999999999
Q ss_pred EEECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
++.....+..+.+.. ..++.++.+++-.+.
T Consensus 287 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 287 VILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp EEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred EEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 999988777665432 235667777765443
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=81.53 E-value=23 Score=35.88 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=74.5
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH-HHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA-EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~-e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
...+|.+.+...+..... ..++.+++++...+|-.. -.+..+++++..|+..+..+ ...++.+...+++.+++.+
T Consensus 180 gv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 255 (501)
T 3ipl_A 180 AVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHI 255 (501)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEE
T ss_pred EEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEE
Confidence 356899988877665544 348899999998888652 23344677888899888765 4688999999999999999
Q ss_pred EECccchhHHHHhhc-CCCCccEEEEecC
Q 009160 183 ICGSKELKKLVDLSG-QLDTVKHVICMDA 210 (541)
Q Consensus 183 i~~~~~~~~~~~~~~-~~~~~~~ii~~~~ 210 (541)
+.....+..+.+... ....++.+++-.+
T Consensus 256 ~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 256 SLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp EECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred EchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 999888776655432 2225666665443
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=80.33 E-value=27 Score=35.88 Aligned_cols=105 Identities=10% Similarity=-0.084 Sum_probs=76.8
Q ss_pred ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH--HHHH-HHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCc
Q 009160 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA--EWFV-ALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~--e~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 179 (541)
+...+|.+.+...+...... .++.+++++...+|-+. .+.. .+++++..|+..+..+ ...++.+...+++.++
T Consensus 198 KgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~ 273 (539)
T 1mdb_A 198 KLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKV 273 (539)
T ss_dssp CEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTC
T ss_pred cEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCC
Confidence 34578999887776655443 47889999988888653 3333 5788899999888765 4678999999999999
Q ss_pred eEEEECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 180 TTVICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
++++.....+..+.+.. ..++.++.+++-.+.
T Consensus 274 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 274 TITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp SEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred eEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 99999888776654432 345677877775544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 541 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-50 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 3e-43 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 4e-39 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 3e-24 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 1e-11 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-21 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 4e-06 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 2e-20 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 5e-04 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-19 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-06 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 181 bits (460), Expect = 2e-50
Identities = 80/462 (17%), Positives = 145/462 (31%), Gaps = 86/462 (18%)
Query: 96 FEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRN 155
+E + + ++Y + +C FA+ L LG KK + VAI+ E VA+ C R
Sbjct: 93 WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 152
Query: 156 VTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDL-----------SGQLDTVKH 204
I+ EA+ + ++ VI + ++ + + + +V+H
Sbjct: 153 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEH 212
Query: 205 VICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
VI + S + E W + ++A+ D I+YTSGSTG
Sbjct: 213 VIVLKR-TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-----DPLFILYTSGSTGK 266
Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGT 324
PKGV+ T G L + V D D+Y + V + + G
Sbjct: 267 PKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL-----LYGPLACGA 321
Query: 325 PLTLTDTSSKIKKGTQGDASV--LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDL 382
+ + + V + ++ + P + + K ++ D
Sbjct: 322 TTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEG--------TDR 373
Query: 383 AYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442
+ +R + S G P++ + +
Sbjct: 374 S-------------------------------------SLRILGSVGEPINPEAWEWYWK 396
Query: 443 CLG---APIGQGYGLTETCAGGTFSEVDDSSV--GRVGAPLPCSFIKLIDWPEGGYLTSD 497
+G P+ + TET + G P L+D EG
Sbjct: 397 KIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEG------ 449
Query: 498 SPMP---RGEIVIAG--PNVTVGYFKNEEKTKEVYKVMLDRF 534
P G +VI P F + E+ ++ Y
Sbjct: 450 HPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 491
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 159 bits (402), Expect = 3e-43
Identities = 94/481 (19%), Positives = 155/481 (32%), Gaps = 103/481 (21%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
L + E++ G K ++ H GE TY + ++
Sbjct: 12 NLWDFLERAAALFGRKEVVSRL-------------------HTGEVHRTTYAEVYQRARR 52
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
GL LG +RVA A + T L + + Y LN E
Sbjct: 53 LMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAE 112
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
++ L + + G+L TV+H + MD P + E++
Sbjct: 113 DKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE------------- 159
Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA-TVSAVMTIVPDLGSKDVYLA 297
D + YT+G+TGLPKGV+ +H ++ +++A + L KDV L
Sbjct: 160 --EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP 217
Query: 298 YLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357
+P+ HV VG+ P + ++ G T A VP +
Sbjct: 218 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGE-------GVTFTAGVPTV 270
Query: 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAI 417
L + +
Sbjct: 271 -----------------------------------------------WLALADYLESTGH 283
Query: 418 LGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD--------- 468
+R ++ GG+ +G + QGYGLTET + V
Sbjct: 284 RLKTLRRLVVGGSAAPRSLIARFE-RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEE 342
Query: 469 --SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
+ + G P+P +++ D EG + D GE+ + GP +T GY+ NEE T+
Sbjct: 343 KLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKAL-GEVQLKGPWITGGYYGNEEATRSA 400
Query: 527 Y 527
Sbjct: 401 L 401
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 149 bits (376), Expect = 4e-39
Identities = 82/460 (17%), Positives = 148/460 (32%), Gaps = 77/460 (16%)
Query: 96 FEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRR 154
FE G+ +TY + E +C A L +G +K + VA++ E + L R
Sbjct: 80 FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 139
Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLV-DLSGQLDTVKHV 205
++A +L +N+ + VI + E K++V D + V+HV
Sbjct: 140 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 199
Query: 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLP 265
+ +V+ T + PVD++ D ++YTSGSTG P
Sbjct: 200 LVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSE-----DPLFLLYTSGSTGAP 254
Query: 266 KGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTP 325
KGV + L M D +DV+ + + V + YG
Sbjct: 255 KGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYV-----VYGPLLYGCA 309
Query: 326 LTLTDTSSKIKKGTQGDASV--LRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLA 383
+ + + ++ + + T P L
Sbjct: 310 TLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTAL------------------------- 344
Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443
R L S+ L+ L R + S G P++A+ + +
Sbjct: 345 --RLLKRAGDSYIENHSLKSL------------------RCLGSVGEPIAAEVWEWYSEK 384
Query: 444 LG---APIGQGYGLTETCAGGTFSEVDDSS---VGRVGAPLPCSFIKLIDWPEGGYLTSD 497
+G PI Y TE+ + + G P ++D G L +
Sbjct: 385 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL--N 442
Query: 498 SPMPRGEIVIAG--PNVTVGYFKNEEKTKEVYKVMLDRFM 535
+ G + + P+ +KN ++ + Y +
Sbjct: 443 TSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY 482
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 103 bits (258), Expect = 3e-24
Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 24/252 (9%)
Query: 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICN 118
T E ++ K + GT EV +TY + FE
Sbjct: 18 TAGEQLHKAMKRYALVP--GTIAFTDAHIEVN----------------ITYAEYFEMSVR 59
Query: 119 FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETE 178
A + + G R+ + ++ ++F+ + G V V E L S+N ++
Sbjct: 60 LAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQ 119
Query: 179 VTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGR 238
T V K L+K++++ +L ++ +I MD+ + +
Sbjct: 120 PTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ----GFQSMYTFVTSHLPPGFNE 175
Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP--DLGSKDVYL 296
+ V + +A+IM +SGSTGLPKGV + H S + + L
Sbjct: 176 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAIL 235
Query: 297 AYLPLAHVLELV 308
+ +P H +
Sbjct: 236 SVVPFHHGFGMF 247
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 64.5 bits (156), Expect = 1e-11
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 421 RIRFILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
+ I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 305 NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVP 364
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
K++D G L + GE+ + GP + GY N E T +
Sbjct: 365 FFEAKVVDLDTGKTLGVNQR---GELCVRGPMIMSGYVNNPEATNALI 409
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 95.4 bits (236), Expect = 2e-21
Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 36/224 (16%)
Query: 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAF 113
W G T +L ++GD+ + +Y +
Sbjct: 22 WAG-ETFGDLLRDRAAKYGDR------------IAITCGNTH-----------WSYRELD 57
Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
A+G +LG ++++RV + E+F + FR V S + Y
Sbjct: 58 TRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYF 117
Query: 174 LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADV 233
E I D D + + +P+ + + + D+
Sbjct: 118 CEFAEAAAYII--------PDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDL 169
Query: 234 QILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA 277
PV S+DVA + + GSTGL K + TH + +
Sbjct: 170 H----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIY 209
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 46.9 bits (110), Expect = 4e-06
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTE-TCAGGTFSEVDDSSVGRVGAPLP 479
++ + GGA SA+ R + G + Q +G+ E + ++ V G P+
Sbjct: 299 SLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMS 358
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
+ + P G ++ GP GY+K EE +
Sbjct: 359 PYDESRVWDDHDRDVK---PGETGHLLTRGPYTIRGYYKAEEHNAASF 403
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 92.0 bits (227), Expect = 2e-20
Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 41/228 (17%)
Query: 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETI 116
+ T+ E+ ++ D L V G LT+ + +
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL----------AVPARGLR-----------LTHAELRARV 39
Query: 117 CNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNE 176
A+ L G + ++RVA+ A A+ +A+ R + L L +
Sbjct: 40 EAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKR 99
Query: 177 TEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQIL 236
E+T + ++ D Q + +I + + D +
Sbjct: 100 GEMTAAVIAVGR--QVADAIFQSGSGARIIFLGDLV------------------RDGEPY 139
Query: 237 GRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT 284
P++ A A I YTSG+TGLPK ++ + V + T
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST 187
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 12/138 (8%)
Query: 395 WFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454
F L + L +R + GA + ++ L YG
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLD-SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGT 306
Query: 455 TETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGE----IVIAGP 510
TE + + G +++ D + GE IV A
Sbjct: 307 TEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-------GVDEIVANGEEGELIVAASD 359
Query: 511 NVTVGYFKNEEKTKEVYK 528
+ VGY + T E +
Sbjct: 360 SAFVGYLNQPQATAEKLQ 377
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 90.0 bits (222), Expect = 1e-19
Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 49/217 (22%)
Query: 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETIC 117
T+ +LFE+ + + + LTY +
Sbjct: 23 KTIHQLFEEQVSKRPNN------------VAIVCENEQ-----------LTYHELNVKAN 59
Query: 118 NFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177
A + G K+ V I + + F+ + + V I +E + Y L+++
Sbjct: 60 QLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDS 119
Query: 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
+ ++ + + ++ KI ++ +
Sbjct: 120 QARMLLTQKHLVHLIHNIQFNGQVEIFEEDT----------------IKIREGTNLHV-- 161
Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGN 274
P + D+A ++YTSG+TG PKG M+ H
Sbjct: 162 ---PSKST-----DLAYVIYTSGTTGNPKGTMLEHKG 190
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGR-VGAPLPC 480
I+ +++ G+ S YG TET T ++G V P
Sbjct: 279 IQTLITAGSATSPSLVNKW--KEKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPI 336
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
++ E L S GE+ I G + GY+K E T + +
Sbjct: 337 QNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWKRPELTSQKF 381
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 541 | |||
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.2e-55 Score=465.72 Aligned_cols=390 Identities=24% Similarity=0.328 Sum_probs=323.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
.+...|++++|+++++++||++|+++.+ + ++.+++||+||.++++++|++|.++|+++||+
T Consensus 7 ~~~~~~l~~~l~~~a~~~pd~~av~~~~----------~---------g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~ 67 (534)
T d1v25a_ 7 MDEELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDR 67 (534)
T ss_dssp CCCCCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCCHHHHHHHHHHHcCCCeEEEEec----------C---------CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCE
Confidence 3455689999999999999999998742 2 34467999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
|+|+++|+++|+++++||+++|++++|+++.++.+++.++++.+++++++++.........+....+.++.++.......
T Consensus 68 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (534)
T d1v25a_ 68 VATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP 147 (534)
T ss_dssp EEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC
T ss_pred EEEEeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999888888888888888887665433
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC-CCCCCC
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-PDLGSK 292 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~ 292 (541)
... ...... .....+.....++++++|+|||||||.||||+++|++++..+....... ..+...
T Consensus 148 ~~~-----------~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~ 212 (534)
T d1v25a_ 148 EGY-----------LAYEEA----LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 212 (534)
T ss_dssp TTC-----------EEHHHH----CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTT
T ss_pred ccc-----------cccccc----ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccc
Confidence 220 001111 1122234566788999999999999999999999999987665543332 256789
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEe----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHh
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~ 368 (541)
|++++.+|++|.+++...+..+..|+++++ +++..+... ++++++|++.++|.++..+.......
T Consensus 213 d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-----------~~~~~vt~~~~~p~~~~~~~~~~~~~ 281 (534)
T d1v25a_ 213 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLEST 281 (534)
T ss_dssp CEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHH
T ss_pred cccccccchhhhccccccceeeeecceeeeccccccccccchh-----------hhhccccccccCchhhhhhhhhhccc
Confidence 999999999999999998888888887777 444455555 89999999999999999888754332
Q ss_pred hhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcc
Q 009160 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPI 448 (541)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v 448 (541)
.. ..++||.+++||+++++++.+++++. |.++
T Consensus 282 ~~-----------------------------------------------~~~~lr~~~~gG~~~~~~~~~~~~~~-~~~i 313 (534)
T d1v25a_ 282 GH-----------------------------------------------RLKTLRRLVVGGSAAPRSLIARFERM-GVEV 313 (534)
T ss_dssp TC-----------------------------------------------CCSSCCEEEECSSCCCHHHHHHHHHT-TCEE
T ss_pred cc-----------------------------------------------cccceeEEEEecCCCCHHHHHHHHHh-CCee
Confidence 11 12489999999999999999998864 8999
Q ss_pred eeccCcccccccccccCCCCC-----------CCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccC
Q 009160 449 GQGYGLTETCAGGTFSEVDDS-----------SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~~~-----------~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~ 517 (541)
++.||+||++..++....... ..+++|+|+||++++|+| ++++.++ .+.++.|||+|+|++++.|||
T Consensus 314 ~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~-~~~~~~Gel~v~g~~v~~gY~ 391 (534)
T d1v25a_ 314 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYY 391 (534)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCB
T ss_pred eeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCC-CCCCeeEEEEEcCCcccceec
Confidence 999999999888765433221 237899999999999999 7887776 445789999999999999999
Q ss_pred CCchhhHhhhccCCCceEEcccc
Q 009160 518 KNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 518 ~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++++.|++.| +.||||+|+|+
T Consensus 392 ~~~~~t~~~~--~~dg~~~TGDl 412 (534)
T d1v25a_ 392 GNEEATRSAL--TPDGFFRTGDI 412 (534)
T ss_dssp TCHHHHHTTB--CTTSCEEEEEE
T ss_pred CChhhhhhhc--ccCCCCccCce
Confidence 9999999999 88999999875
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.8e-55 Score=474.42 Aligned_cols=404 Identities=21% Similarity=0.265 Sum_probs=316.6
Q ss_pred cCCC-CCCH-HHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCC
Q 009160 53 SWEG-ISTL-AELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKK 130 (541)
Q Consensus 53 ~~~~-~~tl-~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~ 130 (541)
.|++ ..++ ..+++++++++||++|+++.. ++ .++.+++||+||.++++++|++|+++|+++
T Consensus 65 wf~~~~~N~~~n~ldrh~~~~~d~~Ali~~~---------~~--------~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~ 127 (643)
T d1pg4a_ 65 WYEDGTLNLAANCLDRHLQENGDRTAIIWEG---------DD--------TSQSKHISYRELHRDVCRFANTLLDLGIKK 127 (643)
T ss_dssp ESTTCEECHHHHHTGGGHHHHTTSEEEEEEC---------SS--------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCT
T ss_pred eCCCChhhHHHHHHHHHHHhCCCCEEEEEEe---------cC--------CCCceEEeHHHHHHHHHHHHHHHHHcCCCC
Confidence 4554 2334 667778899999999998731 01 234578999999999999999999999999
Q ss_pred CCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhh--cCC
Q 009160 131 EERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLS--GQL 199 (541)
Q Consensus 131 g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~--~~~ 199 (541)
||+|+++++|+++++++++||+++|++++|+++.++++++.+++++++++++|+++... ..+.... ...
T Consensus 128 Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (643)
T d1pg4a_ 128 GDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNV 207 (643)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTC
T ss_pred CCEEEEecccchHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999976532 2222222 245
Q ss_pred CCccEEEEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHH
Q 009160 200 DTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279 (541)
Q Consensus 200 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~ 279 (541)
+.+.+++.++........ .........+... .......+....++|+++|+|||||||.||||+++|++++...
T Consensus 208 ~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~ 281 (643)
T d1pg4a_ 208 TSVEHVIVLKRTGSDIDW-----QEGRDLWWRDLIE-KASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYA 281 (643)
T ss_dssp CSCCEEEEECSSCCCCCC-----CBTTEEEHHHHHT-TSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHH
T ss_pred ccceEEEEeccCCccccc-----ccccchhhhhhhc-ccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHH
Confidence 667778877655332100 0111223334333 2223334556788999999999999999999999999977665
Q ss_pred HHH-HhhCCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-------CCcccccccchhhhcCcccccccccceE
Q 009160 280 SAV-MTIVPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-------GTPLTLTDTSSKIKKGTQGDASVLRPTV 350 (541)
Q Consensus 280 ~~~-~~~~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-------~~~~~l~~~~~~~~~~~~~~i~~~~~t~ 350 (541)
... ...+ +++++|++++.+|++|++++.. ++.+|+.|+++++ +++..+++. ++++++|+
T Consensus 282 ~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~-----------i~~~~vt~ 349 (643)
T d1pg4a_ 282 ATTFKYVF-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV-----------VDKHQVNI 349 (643)
T ss_dssp HHHHHHHT-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH-----------HHHHTCSE
T ss_pred HHHHHHhh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH-----------HHHHCCcE
Confidence 543 4445 8899999999999999999876 6678999999987 245556666 99999999
Q ss_pred EeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccC
Q 009160 351 MASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGA 430 (541)
Q Consensus 351 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~ 430 (541)
++++|+++..+++........ ...++||.+++||+
T Consensus 350 ~~~~P~~l~~l~~~~~~~~~~---------------------------------------------~dl~sLr~i~~~G~ 384 (643)
T d1pg4a_ 350 LYTAPTAIRALMAEGDKAIEG---------------------------------------------TDRSSLRILGSVGE 384 (643)
T ss_dssp EEECHHHHHHHHTTGGGGTTT---------------------------------------------CCCTTCCEEEEESS
T ss_pred EEehHHHHHHHHhCcchhccc---------------------------------------------cCCCceEEEEEEeC
Confidence 999999999887643211110 11248999999999
Q ss_pred CCCHHHHHHHHHHhC---CcceeccCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEE
Q 009160 431 PLSADTQRFINICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEI 505 (541)
Q Consensus 431 ~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi 505 (541)
|+++++.+++.+.+| +++++.||+||+++.++...+. +.+.+++|+|++|++++|+| ++|+.++ .|+.|||
T Consensus 385 pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~---~g~~Gel 460 (643)
T d1pg4a_ 385 PINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQE---GATEGNL 460 (643)
T ss_dssp CCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCC---SSEEEEE
T ss_pred CCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCC---CCceEEE
Confidence 999999999999884 7799999999998877655443 34679999999999999999 7787654 7889999
Q ss_pred EEcc--CCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 506 VIAG--PNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 506 ~v~g--~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
+|+| |+++.|||++++.+.+.++...+|||+|+|+
T Consensus 461 ~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl 497 (643)
T d1pg4a_ 461 VITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 497 (643)
T ss_dssp EECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEE
T ss_pred EEecCCCcccccccCChhhchhhhcccCCCeEEcCCE
Confidence 9999 5789999999999998875556777777764
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=3.5e-54 Score=458.09 Aligned_cols=392 Identities=22% Similarity=0.279 Sum_probs=317.1
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.|++++|.+++++|+++|+.+... |+. ..+.+||+||.++++++|++|.++|+++||+|+|+
T Consensus 17 ~t~~~~l~~~~~~~~~~P~~~a~~----------d~~--------~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~ 78 (541)
T d1lcia_ 17 GTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVC 78 (541)
T ss_dssp SCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCHHHHHHHHHHhhCCCCCeEEEE----------eCC--------CCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEE
Confidence 689999999999996665443211 111 11479999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++++..+.+.++...++..+.++.++......
T Consensus 79 ~~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 156 (541)
T d1lcia_ 79 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ-- 156 (541)
T ss_dssp CSSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBT--
T ss_pred eCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCcccc--
Confidence 999999999999999999999999999999999999999999999999999999999888899999999887654322
Q ss_pred cccccCCeEEeeHHHHHhccc------CCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--CCC
Q 009160 218 SVEQSGRWKITSFADVQILGR------ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDL 289 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~ 289 (541)
...++.+...... ....+.....++++++|+|||||||.||||+++|++++.........+ ..+
T Consensus 157 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~ 228 (541)
T d1lcia_ 157 --------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQI 228 (541)
T ss_dssp --------TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCC
T ss_pred --------ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccc
Confidence 1122333322111 112223455678999999999999999999999999998877765543 256
Q ss_pred CCCcEEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 290 GSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 290 ~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
.++|++++.+|++|.++....+..+..|+.+.. .++...... +..+++|.++++|.++..+.....
T Consensus 229 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~t~~~~~p~~~~~~~~~~~ 297 (541)
T d1lcia_ 229 IPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKSTL 297 (541)
T ss_dssp CTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEECCHHHHHHHHHCSC
T ss_pred cccccccccccccccccccccccccccccccccccccccchhHHH-----------HhhhhccccccCcccccccccccc
Confidence 789999999999999999988888888888877 444444444 888999999999999988876322
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~ 446 (541)
.... ...++|.+++||+++++++.+++.+.++.
T Consensus 298 ~~~~-----------------------------------------------~~~~l~~v~~gG~~~~~~~~~~~~~~~~~ 330 (541)
T d1lcia_ 298 IDKY-----------------------------------------------DLSNLHEIASGGAPLSKEVGEAVAKRFHL 330 (541)
T ss_dssp GGGS-----------------------------------------------CCTTCCEEECTTCCCCHHHHHHHHHHTTC
T ss_pred cccc-----------------------------------------------ccccceEEEecccccccccccccccccCC
Confidence 1111 11389999999999999999999998865
Q ss_pred -cceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 447 -PIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 447 -~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
.++++||+||+++.++.......+.+++|+|+|+++++|+|+++++.++ .|+.|||+|+|++++.||+++++.++.
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~---~g~~Gel~v~g~~~~~gY~~~~~~~~~ 407 (541)
T d1lcia_ 331 PGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLG---VNQRGELCVRGPMIMSGYVNNPEATNA 407 (541)
T ss_dssp SCCBCEECCGGGSSCSEECCCC---CCCCBEECTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTBHHHHHH
T ss_pred ceeeecCCccccCceEEecCcccCCCCccccccCCCEEEEEECCCCcCCC---CCCeEEEEEccCccCCeeCCChhhhhh
Confidence 6899999999999988887777788999999999999999976776654 788999999999999999999999999
Q ss_pred hhccCCCceEEcccc
Q 009160 526 VYKVMLDRFMLMVAL 540 (541)
Q Consensus 526 ~f~~d~dGw~~~~~~ 540 (541)
.+ +.||||+|+|+
T Consensus 408 ~~--~~~~~~~TGDl 420 (541)
T d1lcia_ 408 LI--DKDGWLHSGDI 420 (541)
T ss_dssp HB--CTTSCEEEEEE
T ss_pred cc--cCCccccCCCe
Confidence 88 88999999885
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-53 Score=462.22 Aligned_cols=401 Identities=18% Similarity=0.178 Sum_probs=311.4
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEE
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIF 137 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~ 137 (541)
..+.+++++|+++||++|+++.. .. .++.+++||+||.++++++|++|+ ++|+++||+|+|+
T Consensus 60 ~~~n~ldr~a~~~pd~~Ali~~~-----------~~------~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~ 122 (640)
T d1ry2a_ 60 ACYNCVDRHALKTPNKKAIIFEG-----------DE------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122 (640)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEEC-----------SS------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEEC
T ss_pred HHHHHHHHHHhhCCCCEEEEEEe-----------cC------CCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 35888999999999999999731 11 344578999999999999999997 6799999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhhcCCCCccEEEEe
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~ii~~ 208 (541)
++|++|++++++||+++|++++|+++.++++++.++++++++++++++.... ..+.+.......+......
T Consensus 123 ~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (640)
T d1ry2a_ 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVY 202 (640)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEE
T ss_pred eCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeee
Confidence 9999999999999999999999999999999999999999999999986532 2333444445555555554
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh-hCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT-IVP 287 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~-~~~ 287 (541)
.......... .......+.... ..........+..++|+++|+|||||||.||||+++|++++........ .+
T Consensus 203 ~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~- 276 (640)
T d1ry2a_ 203 RKTNNPSVAF----HAPRDLDWATEK-KKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF- 276 (640)
T ss_dssp CSSCCSSCCC----CSSSEEEHHHHH-TTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-
T ss_pred cccccccccc----cccccccccccc-cccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-
Confidence 4332221100 011112222222 2222333445667899999999999999999999999998887665554 45
Q ss_pred CCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-------CCcccccccchhhhcCcccccccccceEEeecHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-------GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILD 359 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-------~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 359 (541)
.++++|++++++|++|+++... ++.+|..|+++++ .++..+++. ++++++|+++++|++++
T Consensus 277 ~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~ 345 (640)
T d1ry2a_ 277 DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI-----------IDEHKVTQFYVAPTALR 345 (640)
T ss_dssp CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH-----------HHHTTCSEEEECHHHHH
T ss_pred CCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHH-----------HHHhCccEEEcChHHHH
Confidence 8899999999999999999776 6778999998877 245556666 99999999999999998
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHH
Q 009160 360 RVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRF 439 (541)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~ 439 (541)
.|.+........ ...++||.+++||+|+++++.++
T Consensus 346 ~l~~~~~~~~~~---------------------------------------------~~l~sLr~v~~gG~~l~~~~~~~ 380 (640)
T d1ry2a_ 346 LLKRAGDSYIEN---------------------------------------------HSLKSLRCLGSVGEPIAAEVWEW 380 (640)
T ss_dssp HHTTSCTTSSSS---------------------------------------------CCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcccccccc---------------------------------------------CCCCceEEEEEecccCcHHHHHH
Confidence 876532111100 01148999999999999999999
Q ss_pred HHHHhC---CcceeccCcccccccccccCCC---CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc--CC
Q 009160 440 INICLG---APIGQGYGLTETCAGGTFSEVD---DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--PN 511 (541)
Q Consensus 440 ~~~~~g---~~v~~~YG~TE~~~~~~~~~~~---~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g--~~ 511 (541)
+++.+| +++++.||+||++......... ..+.+++|+|++|++++|+|.+++.... +.+..|||+|+| |+
T Consensus 381 ~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~--~~~~~Gel~i~~~~p~ 458 (640)
T d1ry2a_ 381 YSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN--TSHAEGVLAVKAAWPS 458 (640)
T ss_dssp HHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEE--CSSCEEEEEESSCCTT
T ss_pred HHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccC--CCCceEEEEEEecCCC
Confidence 999985 5689999999998876655443 3466899999999999999944444432 345679999998 68
Q ss_pred cccccCCCchhhHhhhccCCCceEEcccc
Q 009160 512 VTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 512 v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++.|||+|++.|.++|+.+.+|||+|+|+
T Consensus 459 ~~~gy~~~~e~t~~~~~~~~~gw~~TGDl 487 (640)
T d1ry2a_ 459 FARTIWKNHDRYLDTYLNPYPGYYFTGDG 487 (640)
T ss_dssp SCCEETTCHHHHHHHHTSSSTTSEEEEEE
T ss_pred cccccccCHHHHHhhhccCCCCeEEcCCc
Confidence 99999999999999997777899998874
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=2e-50 Score=426.40 Aligned_cols=376 Identities=18% Similarity=0.192 Sum_probs=299.4
Q ss_pred cccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCC
Q 009160 51 STSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKK 130 (541)
Q Consensus 51 ~~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~ 130 (541)
..++|...||.++|+++|+++||++|+++ +++ .+||+||.++++++|++|+++|+++
T Consensus 16 ~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~------------~~~-----------~~Ty~eL~~~v~~lA~~L~~~Gv~~ 72 (514)
T d1amua_ 16 KAEYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGIGK 72 (514)
T ss_dssp CCCCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCCCCCCCcHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHHcCcCC
Confidence 34567788999999999999999999987 554 7999999999999999999999999
Q ss_pred CCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecC
Q 009160 131 EERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA 210 (541)
Q Consensus 131 g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~ 210 (541)
||+|+++++|+++|+++++||+++|++++|+++.++++++.++++.++++++|++....+.+.... .. ......+.
T Consensus 73 gd~Vai~~~n~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~---~~-~~~~~~~~ 148 (514)
T d1amua_ 73 DTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ---FN-GQVEIFEE 148 (514)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC---CC-SEEEECCC
T ss_pred cCEEEEEeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhc---cc-cccccccc
Confidence 999999999999999999999999999999999999999999999999999999988765543321 11 11111111
Q ss_pred CCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
.............+..++++++|+|||||||.||+|++||+++..........+ ...
T Consensus 149 ----------------------~~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~ 205 (514)
T d1amua_ 149 ----------------------DTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVT 205 (514)
T ss_dssp ----------------------STTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCC
T ss_pred ----------------------ccccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-ccc
Confidence 011111222233456789999999999999999999999999999999988888 899
Q ss_pred CCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 291 SKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
.+|++++.+|++|..++...+.++..|+++++..+..+.+..... ..+....++.+..+|........
T Consensus 206 ~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------- 273 (514)
T d1amua_ 206 EKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFE-----QYINQKEITVITLPPTYVVHLDP------- 273 (514)
T ss_dssp TTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHH-----HHHHHTTCCEEEECHHHHTTSCT-------
T ss_pred ccccccceeccccccccccccccccccccccccccccccchhhhh-----hhhhhhhcccccceeeecccccc-------
Confidence 999999999999999999999999999999884443333221111 11777889999999875432110
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
....++|.+++||+++++++.+++.+ ++.+++
T Consensus 274 ----------------------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~ 305 (514)
T d1amua_ 274 ----------------------------------------------ERILSIQTLITAGSATSPSLVNKWKE--KVTYIN 305 (514)
T ss_dssp ----------------------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEE
T ss_pred ----------------------------------------------cccccccEEEEecccCCHHHhhhhcc--ceeEEE
Confidence 01248999999999999999887766 689999
Q ss_pred ccCcccccccccccCCCCC---CCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhh
Q 009160 451 GYGLTETCAGGTFSEVDDS---SVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~~---~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f 527 (541)
.||+||++.+++....... ..++.|.+.++.++++.| ++++.++ .|+.|||+|+||++++|||++++.+.+.|
T Consensus 306 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~---~g~~GEl~v~~~~~~~gY~~~~~~~~~~~ 381 (514)
T d1amua_ 306 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKS---VGEAGELCIGGEGLARGYWKRPELTSQKF 381 (514)
T ss_dssp EECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCC---TTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred eeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccceecC---CCCeeEEEEccCcccccccccccccceee
Confidence 9999999998876555443 346788999999999999 7777655 78899999999999999999999999987
Q ss_pred ----ccCCCceEEcccc
Q 009160 528 ----KVMLDRFMLMVAL 540 (541)
Q Consensus 528 ----~~d~dGw~~~~~~ 540 (541)
+.+.||||+|+|+
T Consensus 382 ~~~~~~~~~~~~~TGD~ 398 (514)
T d1amua_ 382 VDNPFVPGEKLYKTGDQ 398 (514)
T ss_dssp EECSSSTTSEEEEEEEE
T ss_pred EeccccCCCceEEECCE
Confidence 2345788888774
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=4.3e-48 Score=410.34 Aligned_cols=380 Identities=22% Similarity=0.284 Sum_probs=302.1
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|++++|+++|+++||++|+.+ ++ +.+||+||.++++++|++|.+.|+++||+|+|
T Consensus 24 ~~tl~~~l~~~a~~~pd~~Al~~------------~~-----------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i 80 (536)
T d1mdba_ 24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (536)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCeEEEE------------CC-----------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEE
Confidence 46999999999999999999986 33 36999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhH-----HHHhhcCCCCccEEEEecCC
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKK-----LVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~ii~~~~~ 211 (541)
+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++++++..... ........+.+...+.....
T Consensus 81 ~~~n~~~~~v~~lA~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T d1mdba_ 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (536)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EeCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecc
Confidence 9999999999999999999999999999999999999999999999998654321 11122223333333332221
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCC
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (541)
.. ..+++++ ...+.......++|+++|+|||||||.||||++||+++.+.+......+ .+.+
T Consensus 161 ~~-------------~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~ 222 (536)
T d1mdba_ 161 EE-------------FLPLEDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH 222 (536)
T ss_dssp TT-------------SEEGGGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred cc-------------ccchhhc----ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-cccc
Confidence 11 1112211 1223334567789999999999999999999999999999999988888 8999
Q ss_pred CcEEEEccChHHHHHHHH-HHH-HhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVA-ENL-IAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~-~~~-~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
+|++++.+|+.|.+++.. .+. .+..|.+++. +++..+... +++++++.+..+|..+..+.....
T Consensus 223 ~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 291 (536)
T d1mdba_ 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS 291 (536)
T ss_dssp TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred ccccccccccccccceeeccccccccccccccccCCCCHHHHHHH-----------Hhhhccccccccchhhhhhhhhcc
Confidence 999999999999999875 333 3455666665 555556666 899999999999999988876543
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~ 446 (541)
..... .+++|.+++||+++++++.+++.+.+|.
T Consensus 292 ~~~~~-----------------------------------------------~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 324 (536)
T d1mdba_ 292 SRRDD-----------------------------------------------LSSLQVLQVGGAKFSAEAARRVKAVFGC 324 (536)
T ss_dssp HCCCC-----------------------------------------------CTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred ccccc-----------------------------------------------cCcceeEEEeccccccccccchhhccCc
Confidence 32221 1389999999999999999999999999
Q ss_pred cceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 447 PIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
.....||.+|.+......... ....+++|.|+++....+++.++++.+ +.++.|||+|+|+.++.||+++++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~---~~~~~Gel~v~g~~~~~gY~~~~~~~~~ 401 (536)
T d1mdba_ 325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV---KPGETGHLLTRGPYTIRGYYKAEEHNAA 401 (536)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBC---CTTCCEEEEEECTTSCSSCTTCHHHHHH
T ss_pred eeeeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCee---cccccceeecCCCccccccccccccccc
Confidence 999999999977655444332 234588999987655555553777665 4788999999999999999999999999
Q ss_pred hhccCCCceEEcccc
Q 009160 526 VYKVMLDRFMLMVAL 540 (541)
Q Consensus 526 ~f~~d~dGw~~~~~~ 540 (541)
.+ +++|||+|+|+
T Consensus 402 ~~--~~~~~~~tGD~ 414 (536)
T d1mdba_ 402 SF--TEDGFYRTGDI 414 (536)
T ss_dssp HB--CTTSCEEEEEE
T ss_pred cc--cccCccccCcc
Confidence 98 88888888774
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=2.6e-44 Score=377.24 Aligned_cols=376 Identities=19% Similarity=0.221 Sum_probs=295.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
++|++++|+++|+++||++|+.+.+ +| +++||+||.++++++|++|+++|+++||+|+|
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~~----------~~-----------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i 59 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEGG----------GT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECC----------CC-----------cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEE
Confidence 4799999999999999999998732 33 37999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++++++++++++++++++|++..... ......... ...++.
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~-~~~~~~~~~-~~~~i~--------- 128 (503)
T d3cw9a1 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV-ADAIFQSGS-GARIIF--------- 128 (503)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHH-HHHHHHTTC-CCEEEE---------
T ss_pred EeCCCHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHH-HHHHhhhcc-cccccc---------
Confidence 999999999999999999999999999999999999999999999999876432 222222222 222332
Q ss_pred ccccccCCeEEeeHHHHHhcc----cCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC-CCCCC
Q 009160 217 SSVEQSGRWKITSFADVQILG----RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV-PDLGS 291 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~ 291 (541)
+.++...+ ...+.......++++++|+|||||||.||+|+++|+++.+.+......+ .....
T Consensus 129 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~ 195 (503)
T d3cw9a1 129 -------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR 195 (503)
T ss_dssp -------------HHHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSST
T ss_pred -------------chhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccc
Confidence 22222211 1223334567789999999999999999999999999999998877765 24566
Q ss_pred CcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRK 367 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 367 (541)
.|+++..+|+.|.++... .+.+...++.+++ +++..+... +..++++.+..+|..+..+......
T Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~~~~~~~~~~~~~~~ 264 (503)
T d3cw9a1 196 HNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAAAAAH 264 (503)
T ss_dssp TCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHHHHHH
T ss_pred cccccccCccccccccccccccccccccccccccccChHHhhhh-----------hhhceeecccccccccccccccccc
Confidence 799999999999888776 4555666666666 556666666 8999999999999999888765433
Q ss_pred hhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCc
Q 009160 368 KVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAP 447 (541)
Q Consensus 368 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~ 447 (541)
.... ...++||.+++||+++++++...+...++..
T Consensus 265 ~~~~---------------------------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~ 299 (503)
T d3cw9a1 265 AGSS---------------------------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGE 299 (503)
T ss_dssp TCTT---------------------------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSE
T ss_pred cccc---------------------------------------------ccccceEEEEecccccccccccccccccccc
Confidence 2211 1124899999999999999999999999999
Q ss_pred ceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc-CCcccccCCCchhhHhh
Q 009160 448 IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG-PNVTVGYFKNEEKTKEV 526 (541)
Q Consensus 448 v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g-~~v~~GY~~~~~~t~~~ 526 (541)
+.+.||+||++..+...........+.+.+.+...+.+.+ ..++.. +.|+.|++++.+ +....||+++++.|++.
T Consensus 300 ~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~ 375 (503)
T d3cw9a1 300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGG-GVDEIV---ANGEEGELIVAASDSAFVGYLNQPQATAEK 375 (503)
T ss_dssp EEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTS-CTTCBC---CTTCCEEEEEECCTTSCCCBTTCHHHHHHH
T ss_pred ccccccccccceeeeeccccccccccccccccceeeeeec-ccCccc---CCCccccccccccccccccccCChhhhHHH
Confidence 9999999999888777666555555666666555555544 455543 477889876665 56677899999999998
Q ss_pred hccCCCceEEcccc
Q 009160 527 YKVMLDRFMLMVAL 540 (541)
Q Consensus 527 f~~d~dGw~~~~~~ 540 (541)
| .||||+|+|+
T Consensus 376 ~---~~g~~~TgD~ 386 (503)
T d3cw9a1 376 L---QDGWYRTSDV 386 (503)
T ss_dssp E---ETTEEEEEEE
T ss_pred h---cCCceecccc
Confidence 8 6788888874
|