Citrus Sinensis ID: 009165
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FYC2 | 537 | Pheophorbide a oxygenase, | yes | no | 0.979 | 0.986 | 0.743 | 0.0 | |
| Q8W496 | 559 | Protochlorophyllide-depen | no | no | 0.805 | 0.779 | 0.315 | 8e-67 | |
| O49931 | 553 | Protein TIC 55, chloropla | N/A | no | 0.794 | 0.777 | 0.271 | 1e-46 | |
| Q9SK50 | 539 | Protein TIC 55, chloropla | no | no | 0.805 | 0.808 | 0.267 | 5e-41 | |
| Q9XJ38 | 463 | Chlorophyllide a oxygenas | N/A | no | 0.536 | 0.626 | 0.274 | 8e-21 | |
| Q9ZWM5 | 645 | Chlorophyllide a oxygenas | N/A | no | 0.617 | 0.517 | 0.239 | 1e-16 | |
| Q9AHG3 | 346 | Putative toluene-4-sulfon | no | no | 0.299 | 0.468 | 0.294 | 1e-12 | |
| Q8S7E1 | 541 | Chlorophyllide a oxygenas | no | no | 0.537 | 0.537 | 0.230 | 2e-11 | |
| P71875 | 386 | 3-ketosteroid-9-alpha-mon | yes | no | 0.292 | 0.409 | 0.289 | 1e-10 | |
| Q44256 | 432 | 3-chlorobenzoate-3,4-diox | no | no | 0.297 | 0.372 | 0.298 | 8e-10 |
| >sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1 | Back alignment and function desciption |
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Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/546 (74%), Positives = 460/546 (84%), Gaps = 16/546 (2%)
Query: 1 MALLLSTTANITTSPRKTLPFLATGTPKRQITVKSLQKRSKNL-SPLRVAAPPSDPAASD 59
+ LL ST+A IT S K +PFL+ T K + V RSK +PLRVAAPPS P +
Sbjct: 3 VVLLSSTSATITKSQSKKIPFLSPTT-KFPLKVSISPSRSKLFHNPLRVAAPPSVPTSDS 61
Query: 60 EETMRKDEKEDYGSLVDDEYG--KESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRD 117
E R +++EYG KE S+F WRDHWYPVSLVEDLDPN+PT FQLLGRD
Sbjct: 62 TEEKR----------IEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRD 111
Query: 118 LVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAS 177
LVLWFD N KW AFDD CPHRLAPLSEGR+DENGHLQCSYHGWSF GCGSCTRIPQAA+
Sbjct: 112 LVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAAT 171
Query: 178 EGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVT 237
GPEARA++SPRACA +FPTMVSQGLLFVWPDE G +RAN+ +PP LPD FDKPEFS+VT
Sbjct: 172 SGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWDRANSIEPPRLPDDFDKPEFSTVT 231
Query: 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPR 297
IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFK+ESSG WGF GAND +PR
Sbjct: 232 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFQGANDDSPR 291
Query: 298 ISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTM 357
I+AKFVAPCY MNKIE+D KLP+VG+QKW+IWICSFN+PMAPGKTRSIVCSARNFFQF++
Sbjct: 292 ITAKFVAPCYSMNKIELDAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSV 351
Query: 358 PGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSE-DVNKEYTKITFTPT 416
PGPAWWQVVPRW+EHWTSN VYDGDMIVLQGQEK+FL+K ME + DVNK+YTK+TFTPT
Sbjct: 352 PGPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPT 411
Query: 417 QADRLVLAFRNWLRRHGNSQPEWFGFS-SQQPSPSTVLSKCQMLDRFEQHTLKCSSCREA 475
QADR VLAFRNWLRRHG SQPEWFG + S QP PSTVL+K QMLDRF+QHT CSSC+ A
Sbjct: 412 QADRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGA 471
Query: 476 YSAFQTGQKFLIGATVAFCATAGIPSDLQSRIVLAGLALVSAALAYALHELQKNFVFVDY 535
Y++FQ +KFL+GATV + ATAG+PSD+Q R+VLAGL+L+SAA AYALHE +KNFVF DY
Sbjct: 472 YNSFQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISAASAYALHEQEKNFVFRDY 531
Query: 536 VHAEID 541
VH+EI+
Sbjct: 532 VHSEIE 537
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Catalyzes the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of pheophorbide a (pheide a) to a primary fluorescent catabolite (pFCC). Works in a two-step reaction with red chlorophyll catabolite reductase (RCCR). Creates the intermediate RCC through the opening of the porphyrin macrocycle by the introduction of one atom of molecular oxygen at the alpha-methine bridge. Seems to be specific for pheide a. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 2EC: .EC: 2EC: 0 |
| >sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1 | Back alignment and function description |
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| >sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina GN=CAO PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas reinhardtii GN=CAO PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5 SV=1 | Back alignment and function description |
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| >sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp. japonica GN=CAO PE=2 SV=1 | Back alignment and function description |
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| >sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2 | Back alignment and function description |
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| >sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas testosteroni GN=cbaA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| 255565489 | 531 | pheophorbide A oxygenase, putative [Rici | 0.970 | 0.988 | 0.782 | 0.0 | |
| 225436442 | 539 | PREDICTED: pheophorbide a oxygenase, chl | 0.988 | 0.992 | 0.777 | 0.0 | |
| 226434019 | 539 | pheide a oxyganase [Vitis vinifera] | 0.988 | 0.992 | 0.777 | 0.0 | |
| 162568918 | 531 | pheophorbide A oxygenase 2 [Nicotiana ta | 0.863 | 0.879 | 0.837 | 0.0 | |
| 224118438 | 535 | predicted protein [Populus trichocarpa] | 0.988 | 1.0 | 0.787 | 0.0 | |
| 407930081 | 537 | lethal leaf spot 1-like protein [Capsicu | 0.918 | 0.925 | 0.777 | 0.0 | |
| 351726806 | 563 | lethal leaf spot 1-like protein [Glycine | 0.957 | 0.920 | 0.757 | 0.0 | |
| 15230543 | 537 | pheophorbide a oxygenase [Arabidopsis th | 0.979 | 0.986 | 0.743 | 0.0 | |
| 37962886 | 537 | accelerated cell death 1 [Arabidopsis th | 0.979 | 0.986 | 0.741 | 0.0 | |
| 297815634 | 537 | hypothetical protein ARALYDRAFT_905628 [ | 0.979 | 0.986 | 0.739 | 0.0 |
| >gi|255565489|ref|XP_002523735.1| pheophorbide A oxygenase, putative [Ricinus communis] gi|223537039|gb|EEF38675.1| pheophorbide A oxygenase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/547 (78%), Positives = 464/547 (84%), Gaps = 22/547 (4%)
Query: 1 MALLLS------TTANITTSPRKTLPFLATGTPKRQITVKSLQKRSKNLSPLRVAAPPSD 54
MALL+S ++ ++T + K FL R + + L R+ LSPL VAAPPS
Sbjct: 1 MALLISASCMPKSSLSLTQTHFKDSIFLFN----RTFSCQKLPTRTYKLSPLHVAAPPS- 55
Query: 55 PAASDEETMRKDEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLL 114
P+ EE R VDDE G+ES DSKFSWRDHWYPVSLVEDLDP LPT FQLL
Sbjct: 56 PSVEKEEEYR----------VDDESGQESVDSKFSWRDHWYPVSLVEDLDPGLPTPFQLL 105
Query: 115 GRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQ 174
GRDLVLWFD + +WVA DDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQ
Sbjct: 106 GRDLVLWFDTTNQEWVALDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQ 165
Query: 175 AASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFS 234
A EGPEARA++SPRACATRFPTMVSQGLLFVWPDE G ERA A+KPPMLPD FDKPEFS
Sbjct: 166 AMPEGPEARAVKSPRACATRFPTMVSQGLLFVWPDENGWERARASKPPMLPDNFDKPEFS 225
Query: 235 SVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDG 294
+VTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPL FKLE SG WGFAGAN+G
Sbjct: 226 TVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLAFKLEGSGPWGFAGANEG 285
Query: 295 NPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQ 354
NPRISAKFVAPCYY+NKIEIDTKLP+VGDQKW+IWICSFNVPMAPGKTRSIVCSARNF Q
Sbjct: 286 NPRISAKFVAPCYYINKIEIDTKLPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFLQ 345
Query: 355 FTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFT 414
FTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLS+ EGS +VN++YTK+TFT
Sbjct: 346 FTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSESKEGS-NVNEQYTKLTFT 404
Query: 415 PTQADRLVLAFRNWLRRHGNSQPEWFGFSSQQPSPSTVLSKCQMLDRFEQHTLKCSSCRE 474
PTQADR VLAFRNWLRRHGNSQPEWF F QQP PST+LSK QMLDRFEQHT KCSSCR+
Sbjct: 405 PTQADRFVLAFRNWLRRHGNSQPEWFSFDGQQPLPSTILSKRQMLDRFEQHTNKCSSCRK 464
Query: 475 AYSAFQTGQKFLIGATVAFCATAGIPSDLQSRIVLAGLALVSAALAYALHELQKNFVFVD 534
AY+AF+T QK LIGATVAF ATAGIPSDL RI+LAGLA++SA Y L++L+ NFV VD
Sbjct: 465 AYTAFRTLQKLLIGATVAFSATAGIPSDLNLRIILAGLAILSAVSVYILNQLENNFVHVD 524
Query: 535 YVHAEID 541
YVHAEID
Sbjct: 525 YVHAEID 531
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436442|ref|XP_002274210.1| PREDICTED: pheophorbide a oxygenase, chloroplastic [Vitis vinifera] gi|297734893|emb|CBI17127.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|226434019|gb|ACO56118.1| pheide a oxyganase [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|162568918|gb|ABY19385.1| pheophorbide A oxygenase 2 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|224118438|ref|XP_002331482.1| predicted protein [Populus trichocarpa] gi|222873560|gb|EEF10691.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|407930081|gb|AFU51539.1| lethal leaf spot 1-like protein [Capsicum annuum] | Back alignment and taxonomy information |
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| >gi|351726806|ref|NP_001236883.1| lethal leaf spot 1-like protein [Glycine max] gi|76162840|gb|ABA40832.1| lethal leaf spot 1-like protein [Glycine max] | Back alignment and taxonomy information |
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| >gi|15230543|ref|NP_190074.1| pheophorbide a oxygenase [Arabidopsis thaliana] gi|41688605|sp|Q9FYC2.1|PAO_ARATH RecName: Full=Pheophorbide a oxygenase, chloroplastic; Short=AtPaO; Short=Pheide a oxygenase; AltName: Full=Accelerated cell death 1; AltName: Full=Lethal leaf-spot 1 homolog; Short=Lls1; Flags: Precursor gi|9798391|emb|CAC03538.1| lethal leaf-spot 1 homolog Lls1 [Arabidopsis thaliana] gi|20260386|gb|AAM13091.1| lethal leaf-spot 1 homolog Lls1 [Arabidopsis thaliana] gi|332644443|gb|AEE77964.1| pheophorbide a oxygenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|37962886|gb|AAR05797.1| accelerated cell death 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297815634|ref|XP_002875700.1| hypothetical protein ARALYDRAFT_905628 [Arabidopsis lyrata subsp. lyrata] gi|297321538|gb|EFH51959.1| hypothetical protein ARALYDRAFT_905628 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 541 | ||||||
| TAIR|locus:2082122 | 537 | ACD1 "ACCELERATED CELL DEATH 1 | 0.983 | 0.990 | 0.713 | 3.2e-216 | |
| TAIR|locus:2131406 | 559 | ACD1-LIKE "AT4G25650" [Arabido | 0.332 | 0.322 | 0.437 | 6.8e-65 | |
| TAIR|locus:2047329 | 539 | TIC55-II "translocon at the in | 0.582 | 0.584 | 0.303 | 4.6e-42 | |
| UNIPROTKB|P71875 | 386 | kshA "3-ketosteroid-9-alpha-mo | 0.292 | 0.409 | 0.289 | 1.2e-10 | |
| UNIPROTKB|Q48IV9 | 354 | vanA "Vanillate monooxygenase, | 0.310 | 0.474 | 0.293 | 1.8e-09 | |
| TAIR|locus:2823671 | 536 | CH1 "CHLORINA 1" [Arabidopsis | 0.286 | 0.289 | 0.242 | 1.1e-08 | |
| UNIPROTKB|Q4KB09 | 352 | vanA "Vanillate O-demethylase, | 0.306 | 0.471 | 0.277 | 2.8e-08 | |
| UNIPROTKB|Q8G8B6 | 384 | carAa "Carbazole 1,9a-dioxygen | 0.327 | 0.460 | 0.277 | 1.6e-07 | |
| UNIPROTKB|Q4KAM4 | 363 | prnD "Aminopyrrolnitrin oxidas | 0.293 | 0.438 | 0.293 | 1.8e-07 | |
| UNIPROTKB|D5IGG0 | 378 | carAa "Carbazole 1,9a-dioxygen | 0.205 | 0.293 | 0.307 | 3.3e-07 |
| TAIR|locus:2082122 ACD1 "ACCELERATED CELL DEATH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2089 (740.4 bits), Expect = 3.2e-216, P = 3.2e-216
Identities = 388/544 (71%), Positives = 439/544 (80%)
Query: 1 MALLLSTTANITTSPRKTLPFLATGTPKRQITVKSLQKRSKNL-SPLRVXXXXXXXXXXX 59
+ LL ST+A IT S K +PFL+ T K + V RSK +PLRV
Sbjct: 3 VVLLSSTSATITKSQSKKIPFLSP-TTKFPLKVSISPSRSKLFHNPLRVAAPPSVPTS-- 59
Query: 60 EETMRKDEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLV 119
+ T K +E+YG KE S+F WRDHWYPVSLVEDLDPN+PT FQLLGRDLV
Sbjct: 60 DSTEEKRIEEEYGG------DKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRDLV 113
Query: 120 LWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEG 179
LWFD N KW AFDD CPHRLAPLSEGR+DENGHLQCSYHGWSF GCGSCTRIPQAA+ G
Sbjct: 114 LWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAATSG 173
Query: 180 PEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQ 239
PEARA++SPRACA +FPTMVSQGLLFVWPDE G +RAN+ +PP LPD FDKPEFS+VTIQ
Sbjct: 174 PEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWDRANSIEPPRLPDDFDKPEFSTVTIQ 233
Query: 240 RDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRIS 299
RDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFK+ESSG WGF GAND +PRI+
Sbjct: 234 RDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFQGANDDSPRIT 293
Query: 300 AKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPG 359
AKFVAPCY MNKIE+D KLP+VG+QKW+IWICSFN+PMAPGKTRSIVCSARNFFQF++PG
Sbjct: 294 AKFVAPCYSMNKIELDAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSVPG 353
Query: 360 PAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSE-DVNKEYTKITFTPTQA 418
PAWWQVVPRW+EHWTSN VYDGDMIVLQGQEK+FL+K ME + DVNK+YTK+TFTPTQA
Sbjct: 354 PAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPTQA 413
Query: 419 DRLVLAFRNWLRRHGNSQPEWFGFS-SQQPSPSTVLSKCQMLDRFEQHTLKCSSCREAYS 477
DR VLAFRNWLRRHG SQPEWFG + S QP PSTVL+K QMLDRF+QHT CSSC+ AY+
Sbjct: 414 DRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPSTVLTKRQMLDRFDQHTQVCSSCKGAYN 473
Query: 478 AFQTGQKFLIGATVAFCATAGIPSDLQSRIVXXXXXXXXXXXXXXXHELQKNFVFVDYVH 537
+FQ +KFL+GATV + ATAG+PSD+Q R+V HE +KNFVF DYVH
Sbjct: 474 SFQILKKFLVGATVFWAATAGVPSDVQIRLVLAGLSLISAASAYALHEQEKNFVFRDYVH 533
Query: 538 AEID 541
+EI+
Sbjct: 534 SEIE 537
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| TAIR|locus:2131406 ACD1-LIKE "AT4G25650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2047329 TIC55-II "translocon at the inner envelope membrane of chloroplasts 55-II" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P71875 kshA "3-ketosteroid-9-alpha-monooxygenase oxygenase subunit" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q48IV9 vanA "Vanillate monooxygenase, oxygenase subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
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| TAIR|locus:2823671 CH1 "CHLORINA 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4KB09 vanA "Vanillate O-demethylase, oxygenase subunit" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8G8B6 carAa "Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa" [Pseudomonas resinovorans (taxid:53412)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4KAM4 prnD "Aminopyrrolnitrin oxidase PrnD" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D5IGG0 carAa "Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa" [Sphingomonas sp. (taxid:28214)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FYC2 | PAO_ARATH | 1, ., 1, 4, ., 1, 2, ., 2, 0 | 0.7435 | 0.9796 | 0.9869 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.14.12.20 | 0.979 |
| 3rd Layer | 1.14.12 | 0.983 |
| 3rd Layer | 1.14.13 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.14.13.82 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00022140001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (539 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00019487001 | • | • | • | 0.929 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 541 | |||
| PLN02518 | 539 | PLN02518, PLN02518, pheophorbide a oxygenase | 0.0 | |
| cd03480 | 138 | cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron | 6e-83 | |
| COG4638 | 367 | COG4638, HcaE, Phenylpropionate dioxygenase and re | 1e-42 | |
| cd03469 | 118 | cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron o | 1e-29 | |
| cd04338 | 134 | cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa L | 2e-28 | |
| pfam08417 | 91 | pfam08417, PaO, Pheophorbide a oxygenase | 1e-26 | |
| pfam00355 | 99 | pfam00355, Rieske, Rieske [2Fe-2S] domain | 7e-22 | |
| cd03479 | 144 | cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-hem | 3e-20 | |
| cd03532 | 116 | cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-hem | 2e-18 | |
| cd03467 | 98 | cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster | 8e-18 | |
| cd04337 | 129 | cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a o | 1e-17 | |
| COG2146 | 106 | COG2146, {NirD}, Ferredoxin subunits of nitrite re | 9e-14 | |
| PLN00095 | 394 | PLN00095, PLN00095, chlorophyllide a oxygenase; Pr | 2e-13 | |
| cd03531 | 115 | cd03531, Rieske_RO_Alpha_KSH, The alignment model | 5e-12 | |
| cd03537 | 123 | cd03537, Rieske_RO_Alpha_PrnD, This alignment mode | 9e-12 | |
| PLN02281 | 536 | PLN02281, PLN02281, chlorophyllide a oxygenase | 2e-11 | |
| cd03548 | 136 | cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-hem | 2e-09 | |
| cd03530 | 98 | cd03530, Rieske_NirD_small_Bacillus, Small subunit | 2e-06 | |
| cd03474 | 108 | cd03474, Rieske_T4moC, Toluene-4-monooxygenase eff | 5e-05 | |
| cd03528 | 98 | cd03528, Rieske_RO_ferredoxin, Rieske non-heme iro | 3e-04 | |
| cd03478 | 95 | cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f | 0.002 |
| >gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase | Back alignment and domain information |
|---|
Score = 1019 bits (2637), Expect = 0.0
Identities = 430/544 (79%), Positives = 462/544 (84%), Gaps = 8/544 (1%)
Query: 1 MALLLSTTANIT--TSPRKTLPFLATGTPKRQITVKSLQKRSKNLSPLRVAAPPSDPAAS 58
MA+LL N TS S +R K +PLRVAAPPS P+ +
Sbjct: 1 MAVLLGIACNSLTLTSSTPKSTPFFIPARTIPFVSSSRPRRGKIFTPLRVAAPPSVPSEA 60
Query: 59 DEETMRKDEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDL 118
+ DE E+ V+ E G+ESSDSKFSWRDHWYPVSLVEDLDP++PT FQLLGRDL
Sbjct: 61 ALQQ---DEGEEQR--VEQELGQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDL 115
Query: 119 VLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASE 178
VLW D N +WVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAA E
Sbjct: 116 VLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAPE 175
Query: 179 GPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTI 238
GPEARA++SPRACA +FPTMVSQGLLFVWPDE G ERA ATKPPMLPD FD PEFS+VTI
Sbjct: 176 GPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTVTI 235
Query: 239 QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRI 298
QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFK+ESSG WGFAGAN NPRI
Sbjct: 236 QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRI 295
Query: 299 SAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMP 358
+AKFVAPCYY+NKIEIDTKLP+VGDQKW+IWICSFNVPMAPGKTRSIVCSARNFFQF+MP
Sbjct: 296 TAKFVAPCYYINKIEIDTKLPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMP 355
Query: 359 GPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQA 418
GPAWWQ+VPRW+EHWTSNKVYDGDMIVLQGQEKIFLSK EGS DVN +YTK+TFTPTQA
Sbjct: 356 GPAWWQLVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSKSGEGSADVNAQYTKLTFTPTQA 415
Query: 419 DRLVLAFRNWLRRHGNSQPEWFG-FSSQQPSPSTVLSKCQMLDRFEQHTLKCSSCREAYS 477
DR VLAFRNWLRRHGNSQPEWFG SSQQP PSTVLSK QMLDRFEQHTL CSSC+ AY
Sbjct: 416 DRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSKRQMLDRFEQHTLNCSSCKGAYK 475
Query: 478 AFQTGQKFLIGATVAFCATAGIPSDLQSRIVLAGLALVSAALAYALHELQKNFVFVDYVH 537
AFQT QK LIGATV F ATAGIPSD+Q R++LAGLAL+SAA AYAL EL+KNFVFVDYVH
Sbjct: 476 AFQTLQKVLIGATVVFAATAGIPSDVQLRLILAGLALISAASAYALKELEKNFVFVDYVH 535
Query: 538 AEID 541
AEID
Sbjct: 536 AEID 539
|
Length = 539 |
| >gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
| >gnl|CDD|226985 COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|239551 cd03469, Rieske_RO_Alpha_N, Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
| >gnl|CDD|239830 cd04338, Rieske_RO_Alpha_Tic55, Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
| >gnl|CDD|219832 pfam08417, PaO, Pheophorbide a oxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain | Back alignment and domain information |
|---|
| >gnl|CDD|239561 cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
| >gnl|CDD|239608 cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
| >gnl|CDD|239829 cd04337, Rieske_RO_Alpha_Cao, Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
| >gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|165668 PLN00095, PLN00095, chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|239607 cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
| >gnl|CDD|239611 cd03537, Rieske_RO_Alpha_PrnD, This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
| >gnl|CDD|177920 PLN02281, PLN02281, chlorophyllide a oxygenase | Back alignment and domain information |
|---|
| >gnl|CDD|239617 cd03548, Rieske_RO_Alpha_OMO_CARDO, Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >gnl|CDD|239606 cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
| >gnl|CDD|239556 cd03474, Rieske_T4moC, Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >gnl|CDD|239604 cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
| >gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| PLN02518 | 539 | pheophorbide a oxygenase | 100.0 | |
| PLN02281 | 536 | chlorophyllide a oxygenase | 100.0 | |
| PLN00095 | 394 | chlorophyllide a oxygenase; Provisional | 100.0 | |
| COG4638 | 367 | HcaE Phenylpropionate dioxygenase and related ring | 100.0 | |
| TIGR03228 | 438 | anthran_1_2_A anthranilate 1,2-dioxygenase, large | 99.97 | |
| cd04338 | 134 | Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate | 99.97 | |
| TIGR03229 | 433 | benzo_1_2_benA benzoate 1,2-dioxygenase, large sub | 99.97 | |
| cd03537 | 123 | Rieske_RO_Alpha_PrnD This alignment model represen | 99.97 | |
| cd03480 | 138 | Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase | 99.97 | |
| cd03531 | 115 | Rieske_RO_Alpha_KSH The alignment model represents | 99.96 | |
| cd04337 | 129 | Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) | 99.96 | |
| cd03479 | 144 | Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy | 99.96 | |
| cd03548 | 136 | Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy | 99.96 | |
| cd03532 | 116 | Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy | 99.95 | |
| cd03545 | 150 | Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox | 99.95 | |
| cd03539 | 129 | Rieske_RO_Alpha_S5H This alignment model represent | 99.95 | |
| cd03472 | 128 | Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy | 99.94 | |
| cd03541 | 118 | Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase | 99.94 | |
| cd03469 | 118 | Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( | 99.94 | |
| cd03538 | 146 | Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena | 99.93 | |
| cd03535 | 123 | Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase | 99.93 | |
| cd03536 | 123 | Rieske_RO_Alpha_DTDO This alignment model represen | 99.93 | |
| cd03528 | 98 | Rieske_RO_ferredoxin Rieske non-heme iron oxygenas | 99.92 | |
| cd03530 | 98 | Rieske_NirD_small_Bacillus Small subunit of nitrit | 99.91 | |
| cd03542 | 123 | Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas | 99.91 | |
| cd03529 | 103 | Rieske_NirD Assimilatory nitrite reductase (NirD) | 99.91 | |
| cd03474 | 108 | Rieske_T4moC Toluene-4-monooxygenase effector prot | 99.9 | |
| TIGR02377 | 101 | MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE | 99.9 | |
| TIGR02378 | 105 | nirD_assim_sml nitrite reductase [NAD(P)H], small | 99.9 | |
| PRK09965 | 106 | 3-phenylpropionate dioxygenase ferredoxin subunit; | 99.89 | |
| cd03478 | 95 | Rieske_AIFL_N AIFL (apoptosis-inducing factor like | 99.88 | |
| PRK09511 | 108 | nirD nitrite reductase small subunit; Provisional | 99.85 | |
| PF13806 | 104 | Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A | 99.85 | |
| PF00355 | 97 | Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 | 99.84 | |
| COG2146 | 106 | {NirD} Ferredoxin subunits of nitrite reductase an | 99.82 | |
| cd03467 | 98 | Rieske Rieske domain; a [2Fe-2S] cluster binding d | 99.82 | |
| cd03477 | 91 | Rieske_YhfW_C YhfW family, C-terminal Rieske domai | 99.8 | |
| cd08878 | 196 | RHO_alpha_C_DMO-like C-terminal catalytic domain o | 99.76 | |
| cd03476 | 126 | Rieske_ArOX_small Small subunit of Arsenite oxidas | 99.73 | |
| PF08417 | 92 | PaO: Pheophorbide a oxygenase; InterPro: IPR013626 | 99.7 | |
| cd03471 | 126 | Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co | 99.66 | |
| cd03473 | 107 | Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha | 99.66 | |
| TIGR02694 | 129 | arsenite_ox_S arsenite oxidase, small subunit. Thi | 99.63 | |
| cd03470 | 126 | Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co | 99.55 | |
| cd00680 | 188 | RHO_alpha_C C-terminal catalytic domain of the oxy | 99.49 | |
| PRK13474 | 178 | cytochrome b6-f complex iron-sulfur subunit; Provi | 99.44 | |
| cd08885 | 190 | RHO_alpha_C_1 C-terminal catalytic domain of the o | 99.3 | |
| cd08883 | 175 | RHO_alpha_C_CMO-like C-terminal catalytic domain o | 99.29 | |
| TIGR01416 | 174 | Rieske_proteo ubiquinol-cytochrome c reductase, ir | 99.25 | |
| cd08886 | 182 | RHO_alpha_C_2 C-terminal catalytic domain of the o | 99.25 | |
| cd08887 | 185 | RHO_alpha_C_3 C-terminal catalytic domain of the o | 99.18 | |
| cd08884 | 205 | RHO_alpha_C_GbcA-like C-terminal catalytic domain | 99.18 | |
| PF00848 | 209 | Ring_hydroxyl_A: Ring hydroxylating alpha subunit | 99.15 | |
| cd03475 | 171 | Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma | 98.83 | |
| cd08882 | 243 | RHO_alpha_C_MupW-like C-terminal catalytic domain | 98.49 | |
| cd08880 | 222 | RHO_alpha_C_ahdA1c-like C-terminal catalytic domai | 98.46 | |
| PF11723 | 240 | Aromatic_hydrox: Homotrimeric ring hydroxylase; In | 98.3 | |
| COG0723 | 177 | QcrA Rieske Fe-S protein [Energy production and co | 98.06 | |
| cd08881 | 206 | RHO_alpha_C_NDO-like C-terminal catalytic domain o | 97.6 | |
| KOG1671 | 210 | consensus Ubiquinol cytochrome c reductase, subuni | 97.57 | |
| cd08879 | 237 | RHO_alpha_C_AntDO-like C-terminal catalytic domain | 97.56 | |
| TIGR03171 | 321 | soxL2 Rieske iron-sulfur protein SoxL2. This iron- | 97.53 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 95.37 |
| >PLN02518 pheophorbide a oxygenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-111 Score=911.06 Aligned_cols=535 Identities=80% Similarity=1.328 Sum_probs=446.7
Q ss_pred Ccccccccc---ccccCCCCcccccccCCCCcccccccccccCCCCCcccccCCCCCCCCCchhhccccccccCCCCCCC
Q 009165 1 MALLLSTTA---NITTSPRKTLPFLATGTPKRQITVKSLQKRSKNLSPLRVAAPPSDPAASDEETMRKDEKEDYGSLVDD 77 (541)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (541)
||++++++. +.|.+..+.++|+.+-+ +++.++...+.|++..++.+++++++.+..+. .+..+.++.++ +.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~ 74 (539)
T PLN02518 1 MAVLLGIACNSLTLTSSTPKSTPFFIPAR-TIPFVSSSRPRRGKIFTPLRVAAPPSVPSEAA--LQQDEGEEQRV---EQ 74 (539)
T ss_pred CceeeeccccchhhccCCCCCcceeeecc-eeccccccccccccccccceecCCCCCCcccc--ccCCccccccc---cc
Confidence 666655444 56666777788777633 55666666566666778888888877554322 11111111222 12
Q ss_pred CCCcccCcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcc
Q 009165 78 EYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCS 157 (541)
Q Consensus 78 ~~~~~~~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~Cp 157 (541)
+.+....+.+|+|+++||+||.++||++|+++.++++|++|||||++.+|+++||+|+||||+++||+|+++++|.|+||
T Consensus 75 ~~~~~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~Cp 154 (539)
T PLN02518 75 ELGQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCS 154 (539)
T ss_pred cccccccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcC
Confidence 23445678899999999999999999989999999999999999974489999999999999999999999657899999
Q ss_pred cCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCcceee
Q 009165 158 YHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVT 237 (541)
Q Consensus 158 yHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~ 237 (541)
||||+||++|+|+.||+.+..++..++..++++|+++|||+|++|+||||+++++.+.++...+|.+++++++++|....
T Consensus 155 YHGW~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~~ 234 (539)
T PLN02518 155 YHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTVT 234 (539)
T ss_pred CCCCEEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeEE
Confidence 99999999999999998654443333334678899999999999999999987643444556777776678888888777
Q ss_pred EEEEeecchhhHhhhcCCCCcccccccccccCcCCCCCccEEEEecCccceeeccCCCCceeEEEecceeeeEEEEEccc
Q 009165 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDTK 317 (541)
Q Consensus 238 ~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~~gf~~~~~~~~~~~~~f~~P~~~~~~~~~~~~ 317 (541)
..++++|+|++++||++|++|++|+|++++|+++++.+.+++++..+.+||.+.+........+|.+||++++.+.+..+
T Consensus 235 ~~~~~~~~~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~~ 314 (539)
T PLN02518 235 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDTK 314 (539)
T ss_pred EEEEEecCchhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeecc
Confidence 78899999999999999999999999999999999888889988877788876544444456889999998887766444
Q ss_pred CcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhccccccccchhHHHHHhhHHHHhhhc
Q 009165 318 LPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKL 397 (541)
Q Consensus 318 ~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~ 397 (541)
.+..++..+.+++++++||+++|+||+||+++|||+.+..+.+.|++++|+|+.|+.+|+|||||+++||.||+.++..+
T Consensus 315 ~~~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~PrW~~h~~~n~Vl~~D~~~lh~Qe~~~~~~~ 394 (539)
T PLN02518 315 LPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSKS 394 (539)
T ss_pred ccCCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCchHHHHhhhccchHhHHHHHHHHHHHHhhcc
Confidence 43335555667888999999999999999999999988888788889999999999999999999999999999998877
Q ss_pred ccCCccccccccccccccccccHHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCcccchhHHhHHHHhhhcCChhhHHHH
Q 009165 398 MEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNSQPEWFGFSS-QQPSPSTVLSKCQMLDRFEQHTLKCSSCREAY 476 (541)
Q Consensus 398 ~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~g~p~w~~~~~-~~~lP~~~~~~e~lldRy~~HT~~C~sC~~Al 476 (541)
.+.+.+++++|++.||+|+++|++|++|||||+++|+|+++|++.++ .++||++.++||||||||||||+||+||++||
T Consensus 395 ~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~~~lp~~~~~~~~lldRy~~Ht~~C~SC~~Al 474 (539)
T PLN02518 395 GEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSKRQMLDRFEQHTLNCSSCKGAY 474 (539)
T ss_pred ccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcCCCCcccCCcccCCCCCCCCCHHHHhHHHHhhCccChhHHHHH
Confidence 65556788999999999999999999999999999999999998653 45688877799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEecccccCC
Q 009165 477 SAFQTGQKFLIGATVAFCATAGIPSDLQSRIVLAGLALVSAALAYALHELQKNFVFVDYVHAEID 541 (541)
Q Consensus 477 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~F~~~dy~ha~~~ 541 (541)
|+|+++|++++++++++++++++++.+.+.++++++++++++++|+|++|+++|||+||+||++|
T Consensus 475 k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~~~ 539 (539)
T PLN02518 475 KAFQTLQKVLIGATVVFAATAGIPSDVQLRLILAGLALISAASAYALKELEKNFVFVDYVHAEID 539 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhhceecCccCccCC
Confidence 99999999999999999888888888777788888888899999999999999999999999986
|
|
| >PLN02281 chlorophyllide a oxygenase | Back alignment and domain information |
|---|
| >PLN00095 chlorophyllide a oxygenase; Provisional | Back alignment and domain information |
|---|
| >COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane | Back alignment and domain information |
|---|
| >TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit | Back alignment and domain information |
|---|
| >cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) | Back alignment and domain information |
|---|
| >cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) | Back alignment and domain information |
|---|
| >cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) | Back alignment and domain information |
|---|
| >cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b | Back alignment and domain information |
|---|
| >cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) | Back alignment and domain information |
|---|
| >cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins | Back alignment and domain information |
|---|
| >cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) | Back alignment and domain information |
|---|
| >cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) | Back alignment and domain information |
|---|
| >cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms | Back alignment and domain information |
|---|
| >cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) | Back alignment and domain information |
|---|
| >cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) | Back alignment and domain information |
|---|
| >cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain | Back alignment and domain information |
|---|
| >cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth | Back alignment and domain information |
|---|
| >cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium | Back alignment and domain information |
|---|
| >cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily | Back alignment and domain information |
|---|
| >TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit | Back alignment and domain information |
|---|
| >PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
| >cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) | Back alignment and domain information |
|---|
| >PRK09511 nirD nitrite reductase small subunit; Provisional | Back alignment and domain information |
|---|
| >PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A | Back alignment and domain information |
|---|
| >PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types | Back alignment and domain information |
|---|
| >COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes | Back alignment and domain information |
|---|
| >cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain | Back alignment and domain information |
|---|
| >cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate | Back alignment and domain information |
|---|
| >PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO) | Back alignment and domain information |
|---|
| >cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >TIGR02694 arsenite_ox_S arsenite oxidase, small subunit | Back alignment and domain information |
|---|
| >cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
| >cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit | Back alignment and domain information |
|---|
| >cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases | Back alignment and domain information |
|---|
| >cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols [] | Back alignment and domain information |
|---|
| >cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer | Back alignment and domain information |
|---|
| >cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp | Back alignment and domain information |
|---|
| >PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium | Back alignment and domain information |
|---|
| >COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion] | Back alignment and domain information |
|---|
| >cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases | Back alignment and domain information |
|---|
| >TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 | Back alignment and domain information |
|---|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 541 | ||||
| 3gke_A | 349 | Crystal Structure Of Dicamba Monooxygenase Length = | 1e-15 | ||
| 2zyl_A | 386 | Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxyl | 1e-11 | ||
| 1ww9_A | 392 | Crystal Structure Of The Terminal Oxygenase Compone | 8e-09 | ||
| 3gkq_A | 389 | Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr | 1e-07 | ||
| 3gcf_A | 394 | Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase Fr | 3e-07 | ||
| 1z01_A | 446 | 2-Oxoquinoline 8-Monooxygenase Component: Active Si | 5e-05 |
| >pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase Length = 349 | Back alignment and structure |
|
| >pdb|2ZYL|A Chain A, Crystal Structure Of 3-Ketosteroid-9-Alpha-Hydroxylase (Ksha) From M. Tuberculosis Length = 386 | Back alignment and structure |
| >pdb|1WW9|A Chain A, Crystal Structure Of The Terminal Oxygenase Component Of Carbazole 1, 9a-dioxygenase, A Non-heme Iron Oxygenase System Catalyzing The Novel Angular Dioxygenation For Carbazole And Dioxin Length = 392 | Back alignment and structure |
| >pdb|3GKQ|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Novosphingobium Sp. Ka1 Length = 389 | Back alignment and structure |
| >pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From Nocardioides Aromaticivorans Ic177 Length = 394 | Back alignment and structure |
| >pdb|1Z01|A Chain A, 2-Oxoquinoline 8-Monooxygenase Component: Active Site Modulation By Rieske-[2fe-2s] Center OxidationREDUCTION Length = 446 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Length = 349 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 6e-76
Identities = 67/360 (18%), Positives = 109/360 (30%), Gaps = 51/360 (14%)
Query: 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE 150
R+ WY +L E+L P +L L L+ A D CPHR APLS+G +
Sbjct: 6 RNAWYVAALPEELSEK-PLGRTILDTPLALYRQP-DGVVAALLDICPHRFAPLSDGIL-V 62
Query: 151 NGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDE 210
NGHLQC YHG FDG G C P P FP + L+++WP +
Sbjct: 63 NGHLQCPYHGLEFDGGGQCVHNPHGNGARP-------ASLNVRSFPVVERDALIWIWPGD 115
Query: 211 YGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRR 270
A+ P P + +V + Y L++N+ D H + H
Sbjct: 116 --PALADPGAIPDFGC-RVDPAYRTVGGYGHVDCNYKLLVDNLMDLGHAQYVHRANAQTD 172
Query: 271 DRAKPLPFKLE----------------SSGHWGFAGANDGNP---RISAKFVAPCYYMNK 311
+ ++ S P ++ +N
Sbjct: 173 AFDRL-EREVIVGDGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNF 231
Query: 312 IEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHE 371
I + +Q P S+RNF +
Sbjct: 232 IAV-APEGTPKEQSIHSRGTHILTPETEASCHYFFGSSRNFGI-------DDPEMDGVLR 283
Query: 372 HWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRR 431
W + + D +V++ E+ + + + D + + +
Sbjct: 284 SWQAQALVKEDKVVVEAIER----RRAYVEANGIRPA------MLSCDEAAVRVSREIEK 333
|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Length = 389 | Back alignment and structure |
|---|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Length = 386 | Back alignment and structure |
|---|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Length = 392 | Back alignment and structure |
|---|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Length = 394 | Back alignment and structure |
|---|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Length = 446 | Back alignment and structure |
|---|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Length = 157 | Back alignment and structure |
|---|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Length = 112 | Back alignment and structure |
|---|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} Length = 106 | Back alignment and structure |
|---|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Length = 108 | Back alignment and structure |
|---|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 | Back alignment and structure |
|---|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Length = 111 | Back alignment and structure |
|---|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Length = 115 | Back alignment and structure |
|---|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Length = 103 | Back alignment and structure |
|---|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Length = 130 | Back alignment and structure |
|---|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Length = 113 | Back alignment and structure |
|---|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Length = 119 | Back alignment and structure |
|---|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Length = 460 | Back alignment and structure |
|---|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Length = 454 | Back alignment and structure |
|---|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* Length = 457 | Back alignment and structure |
|---|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Length = 447 | Back alignment and structure |
|---|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Length = 470 | Back alignment and structure |
|---|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Length = 412 | Back alignment and structure |
|---|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 409 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| 3gke_A | 349 | DDMC; rieske cluster, non-heme mononuclear iron, o | 100.0 | |
| 2de6_A | 392 | Terminal oxygenase component of carbazole; electro | 100.0 | |
| 1z01_A | 446 | 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen | 100.0 | |
| 2zyl_A | 386 | Possible oxidoreductase; KSHA, cholesterol, rieske | 100.0 | |
| 3n0q_A | 409 | Putative aromatic-ring hydroxylating dioxygenase; | 100.0 | |
| 3gcf_A | 394 | Terminal oxygenase component of carbazole 1,9A- di | 100.0 | |
| 3vca_A | 412 | Ring-hydroxylating dioxygenase; rieske-type, monon | 100.0 | |
| 3gkq_A | 389 | Terminal oxygenase component of carbazole 1,9A- di | 100.0 | |
| 2gbw_A | 454 | Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy | 100.0 | |
| 2b1x_A | 470 | Naphthalene dioxygenase large subunit; rieske non- | 100.0 | |
| 3gzx_A | 457 | Biphenyl dioxygenase subunit alpha; rieskie, non-h | 100.0 | |
| 2bmo_A | 447 | Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni | 100.0 | |
| 1uli_A | 460 | Biphenyl dioxygenase large subunit; alpha3 BETA3 h | 99.97 | |
| 2qpz_A | 103 | Naphthalene 1,2-dioxygenase system ferredoxin subu | 99.94 | |
| 2i7f_A | 108 | Ferredoxin component of dioxygenase; rieske ferred | 99.93 | |
| 3dqy_A | 106 | Toluene 1,2-dioxygenase system ferredoxin subunit; | 99.93 | |
| 1fqt_A | 112 | Rieske-type ferredoxin of biphenyl dioxygenase; 2F | 99.93 | |
| 2de6_D | 115 | Ferredoxin component of carbazole; electron transf | 99.93 | |
| 1vm9_A | 111 | Toluene-4-monooxygenase system protein C; structur | 99.93 | |
| 2jo6_A | 113 | Nitrite reductase [NAD(P)H] small subunit; all bet | 99.93 | |
| 3gce_A | 121 | Ferredoxin component of carbazole 1,9A- dioxygenas | 99.93 | |
| 2jza_A | 130 | Nitrite reductase [NAD(P)H] small subunit; ISP dom | 99.93 | |
| 3c0d_A | 119 | Putative nitrite reductase NADPH (small subunit) o | 99.93 | |
| 4aiv_A | 119 | Probable nitrite reductase [NAD(P)H] small subuni; | 99.92 | |
| 3d89_A | 157 | Rieske domain-containing protein; CAsp target, rie | 99.92 | |
| 1rie_A | 129 | Rieske iron-sulfur protein; oxidoreductase, cytoch | 99.83 | |
| 1rfs_A | 139 | Rieske protein; iron-sulfur protein, electron tran | 99.82 | |
| 1g8k_B | 133 | Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, | 99.8 | |
| 3azc_A | 133 | Cytochrome B6-F complex iron-sulfur subunit; riesk | 99.64 | |
| 4aay_B | 175 | AROB; oxidoreductase, rieske, iron sulfur, molybdo | 99.76 | |
| 1pp9_E | 196 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU | 99.69 | |
| 3cx5_E | 185 | Cytochrome B-C1 complex subunit rieske, mitochondr | 99.69 | |
| 2qjy_C | 187 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.69 | |
| 2nwf_A | 141 | Ubiquinol-cytochrome C reductase iron-sulfur SUBU; | 99.69 | |
| 1nyk_A | 165 | Rieske iron-sulfur protein; beta barrel, iron sulf | 99.66 | |
| 1vf5_D | 179 | Rieske iron-sulfur protein; photosynthesis, membra | 99.62 | |
| 1jm1_A | 204 | Rieske iron-sulfur protein SOXF; electron transpor | 99.56 |
| >3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-52 Score=435.72 Aligned_cols=311 Identities=21% Similarity=0.328 Sum_probs=237.7
Q ss_pred cccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCC
Q 009165 89 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGS 168 (541)
Q Consensus 89 ~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~ 168 (541)
.+++.||+||.++|| +|+++.++++|++|||||+ .+|+++||+|+|||||++|+.|+++ ++.|+||||||+||.+|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~-~~G~v~a~~n~CpHrg~~L~~G~~~-~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQ-PDGVVAALLDICPHRFAPLSDGILV-NGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCGGGCEEE-TTEEECTTTCCEECTTCC
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEc-CCCcEEEEeCcCCCCCcCCccCCcc-ceEEEECCCCCEEcCCCC
Confidence 568999999999999 8999999999999999998 7999999999999999999999996 689999999999999999
Q ss_pred ccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCcceeeEEEEeecchhh
Q 009165 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDT 248 (541)
Q Consensus 169 c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~d~~~~~~~ 248 (541)
|+.+|+.... .+.+.++++|||++++|+||||+++++. ++...+|.++ ++++++|......++++|||++
T Consensus 81 ~~~~P~~~~~-------~~~~~~l~~~~v~~~~G~V~v~~~~~~~--~~~~~~p~~~-~~~~~~~~~~~~~~~~~~nwk~ 150 (349)
T 3gke_A 81 CVHNPHGNGA-------RPASLNVRSFPVVERDALIWIWPGDPAL--ADPGAIPDFG-CRVDPAYRTVGGYGHVDCNYKL 150 (349)
T ss_dssp EEECCSTTCC-------CCGGGCCCBCCEEEETTEEEECCSCGGG--CCGGGSCCCG-GGGCTTSEEEEEEEEESSCHHH
T ss_pred ccccCccccc-------cccccccceeeEEEECCEEEEeeCCCCC--CcccccCCcc-ccCCCCCEEEeEEEEEecCHHh
Confidence 9999962211 1345789999999999999999987642 1222345565 5666777766667899999999
Q ss_pred HhhhcCCCCcccccccccccCcCCCCCccEEEEecCccceeec---------------c---CCC-Cc-eeEEEecceee
Q 009165 249 LMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGA---------------N---DGN-PR-ISAKFVAPCYY 308 (541)
Q Consensus 249 ~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~~gf~~~---------------~---~~~-~~-~~~~f~~P~~~ 308 (541)
++||++|+||++|+|++++|.++.... +++++.. ..++... . .+. .+ ..++|.+||.+
T Consensus 151 ~~EN~~D~~H~~~~H~~~~~~~~~~~~-~~~v~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~ 228 (349)
T 3gke_A 151 LVDNLMDLGHAQYVHRANAQTDAFDRL-EREVIVG-DGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAM 228 (349)
T ss_dssp HHHHHHCGGGHHHHTHHHHCCTTGGGC-EEEEEEC-SSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEE
T ss_pred HHHhccccccchhccchhhcCccccCC-CCEEEEc-CCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEE
Confidence 999999999999999999998765422 2344432 1222110 0 111 11 24789999997
Q ss_pred eEEEEE-cccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhcccccccc-chhHHHH
Q 009165 309 MNKIEI-DTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVY-DGDMIVL 386 (541)
Q Consensus 309 ~~~~~~-~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~Vl-dqD~~iL 386 (541)
..++.+ ..+.| ......+++++++||+++++||++|.++|||.. .++ .+.+.|.. +++.|| +||+.||
T Consensus 229 ~~~~~~~~~g~p--~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~---~d~---~~~~~~~~--~~~~if~~ED~~il 298 (349)
T 3gke_A 229 LNFIAVAPEGTP--KEQSIHSRGTHILTPETEASCHYFFGSSRNFGI---DDP---EMDGVLRS--WQAQALVKEDKVVV 298 (349)
T ss_dssp EEEEEEEETTSC--GGGSEEEEEEEEEEEEETTEEEEEEEEEESSST---TCH---HHHHHHHH--HHHHHTTTHHHHHH
T ss_pred EEEEecccCCCC--CCCceEEEEEEEEecCCCCeEEEEEEEEecCcc---Cch---hhhHHHHH--HHhhhhhhhhHHHH
Confidence 765543 12222 122344667788999999999999999999842 111 23345554 467888 9999999
Q ss_pred HhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhcC
Q 009165 387 QGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGN 434 (541)
Q Consensus 387 ~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~ 434 (541)
|.||+.+...+. ...+++++++|+++++|||||+++..
T Consensus 299 e~Qq~~l~~~~~----------~~~~~~~~~~D~~~v~~Rr~l~~l~~ 336 (349)
T 3gke_A 299 EAIERRRAYVEA----------NGIRPAMLSCDEAAVRVSREIEKLEQ 336 (349)
T ss_dssp HHHHHTHHHHHH----------TTCCCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCc----------cccccccccccHHHHHHHHHHHHHHH
Confidence 999999876421 23346899999999999999999863
|
| >2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* | Back alignment and structure |
|---|
| >1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* | Back alignment and structure |
|---|
| >2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} | Back alignment and structure |
|---|
| >3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
| >3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A | Back alignment and structure |
|---|
| >3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} | Back alignment and structure |
|---|
| >2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A | Back alignment and structure |
|---|
| >2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A | Back alignment and structure |
|---|
| >3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* | Back alignment and structure |
|---|
| >2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* | Back alignment and structure |
|---|
| >1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A | Back alignment and structure |
|---|
| >2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} | Back alignment and structure |
|---|
| >2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} | Back alignment and structure |
|---|
| >3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* | Back alignment and structure |
|---|
| >1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* | Back alignment and structure |
|---|
| >2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* | Back alignment and structure |
|---|
| >1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A | Back alignment and structure |
|---|
| >2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} | Back alignment and structure |
|---|
| >2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 | Back alignment and structure |
|---|
| >4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} | Back alignment and structure |
|---|
| >1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 | Back alignment and structure |
|---|
| >1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* | Back alignment and structure |
|---|
| >1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* | Back alignment and structure |
|---|
| >3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
| >4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} | Back alignment and structure |
|---|
| >1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... | Back alignment and structure |
|---|
| >3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* | Back alignment and structure |
|---|
| >2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* | Back alignment and structure |
|---|
| >2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A | Back alignment and structure |
|---|
| >1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A | Back alignment and structure |
|---|
| >1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* | Back alignment and structure |
|---|
| >1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 541 | ||||
| d1z01a1 | 148 | b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-m | 3e-24 | |
| d2de6a1 | 142 | b.33.1.2 (A:1-142) Terminal oxygenase component of | 6e-24 | |
| d1fqta_ | 109 | b.33.1.1 (A:) Rieske-type ferredoxin associated wi | 1e-15 | |
| d1vm9a_ | 109 | b.33.1.1 (A:) Toluene-4-monooxygenase system prote | 1e-13 | |
| d2jo6a1 | 108 | b.33.1.3 (A:1-108) NADH-nitrite reductase small su | 1e-13 | |
| d2jzaa1 | 122 | b.33.1.3 (A:1-122) NADH-nitrite reductase small su | 6e-13 | |
| d1rfsa_ | 127 | b.33.1.1 (A:) ISP subunit from chloroplast cytochr | 5e-11 | |
| d3c0da1 | 108 | b.33.1.3 (A:4-111) NADH-nitrite reductase small su | 3e-10 | |
| d1ulia1 | 154 | b.33.1.2 (A:17-170) Biphenyl dioxygenase large sub | 3e-10 | |
| d2b1xa1 | 162 | b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alp | 6e-09 | |
| d2e74d1 | 134 | b.33.1.1 (D:46-179) ISP subunit from the cytochrom | 2e-08 | |
| d1z01a2 | 279 | d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8 | 5e-08 | |
| d2bmoa1 | 150 | b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha | 7e-08 | |
| d1g8kb_ | 133 | b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc | 3e-07 | |
| d1nyka_ | 156 | b.33.1.1 (A:) Soluble Rieske protein {Thermus ther | 5e-06 |
| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 148 | Back information, alignment and structure |
|---|
class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO species: Pseudomonas putida [TaxId: 303]
Score = 96.4 bits (239), Expect = 3e-24
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 53 SDPAASDEETMRKDEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQ 112
SD A++ +T + + Y D+ + + +HWYP +L+ + Q
Sbjct: 2 SDARANNAKTQ--SQYQPY------------KDAAWGFINHWYPALFTHELEEDQVQGIQ 47
Query: 113 LLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRID-ENGHLQCSYHGWSFDGCGSCTR 171
+ G +VL N K A D+C HR LSE + C YHG++FD
Sbjct: 48 ICGVPIVLRRVN--GKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETGKLV 105
Query: 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDE 210
A E T +P G++FV+ E
Sbjct: 106 TIVANPEDKLI-----GTTGVTTYPVHEVNGMIFVFVRE 139
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Length = 142 | Back information, alignment and structure |
|---|
| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Length = 109 | Back information, alignment and structure |
|---|
| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 | Back information, alignment and structure |
|---|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Length = 122 | Back information, alignment and structure |
|---|
| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 | Back information, alignment and structure |
|---|
| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Length = 108 | Back information, alignment and structure |
|---|
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Length = 154 | Back information, alignment and structure |
|---|
| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Length = 162 | Back information, alignment and structure |
|---|
| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134 | Back information, alignment and structure |
|---|
| >d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Length = 279 | Back information, alignment and structure |
|---|
| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Length = 150 | Back information, alignment and structure |
|---|
| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 | Back information, alignment and structure |
|---|
| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 541 | |||
| d1ulia1 | 154 | Biphenyl dioxygenase large subunit BphA1, N-termin | 99.97 | |
| d2de6a1 | 142 | Terminal oxygenase component of carbazole CarAa {J | 99.97 | |
| d2b1xa1 | 162 | Naphthalene 1,2-dioxygenase alpha subunit, N-domai | 99.96 | |
| d1z01a1 | 148 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.96 | |
| d2bmoa1 | 150 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 99.96 | |
| d2jzaa1 | 122 | NADH-nitrite reductase small subunit NirD {Erwinia | 99.92 | |
| d2jo6a1 | 108 | NADH-nitrite reductase small subunit NirD {Escheri | 99.91 | |
| d1vm9a_ | 109 | Toluene-4-monooxygenase system protein C, TmoC {Ps | 99.91 | |
| d1fqta_ | 109 | Rieske-type ferredoxin associated with biphenyl di | 99.9 | |
| d3c0da1 | 108 | NADH-nitrite reductase small subunit NirD {Vibrio | 99.89 | |
| d1rfsa_ | 127 | ISP subunit from chloroplast cytochrome bf complex | 99.73 | |
| d2e74d1 | 134 | ISP subunit from the cytochrome b6f complex, solub | 99.66 | |
| d1g8kb_ | 133 | Arsenite oxidase Rieske subunit {Alcaligenes faeca | 99.65 | |
| d1z01a2 | 279 | 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen | 99.5 | |
| d1nyka_ | 156 | Soluble Rieske protein {Thermus thermophilus [TaxI | 99.45 | |
| d3cx5e1 | 129 | ISP subunit of the mitochondrial cytochrome bc1-co | 99.02 | |
| d1riea_ | 127 | ISP subunit of the mitochondrial cytochrome bc1-co | 98.87 | |
| d1jm1a_ | 202 | Rieske protein II (SoxF) {Archaeon Sulfolobus acid | 98.62 | |
| d2de6a2 | 242 | Terminal oxygenase component of carbazole CarAa {J | 97.74 | |
| d2b1xa2 | 279 | Naphthalene 1,2-dioxygenase alpha subunit, C-domai | 96.9 | |
| d2bmoa2 | 287 | Nitrobenzene dioxygenase alpha subunit, NBDO-alpha | 94.89 | |
| d1ulia2 | 281 | Biphenyl dioxygenase large subunit BphA1, C-termin | 93.4 | |
| d1wqla2 | 279 | Large subunit of cumene dioxygenase cumA1 {Pseudom | 91.52 |
| >d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
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class: All beta proteins fold: ISP domain superfamily: ISP domain family: Ring hydroxylating alpha subunit ISP domain domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]
Probab=99.97 E-value=8.8e-32 Score=246.66 Aligned_cols=137 Identities=14% Similarity=0.226 Sum_probs=116.7
Q ss_pred CCCCCCCCCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccC
Q 009165 71 YGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRID 149 (541)
Q Consensus 71 ~~~~~~~~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~ 149 (541)
+|++.=..++..+.|.+.+|++.||+||+++||+ +|++++++++|++|+|+|+ ++|+++||.|+|||||++|++|...
T Consensus 17 l~~~~Y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~ilv~R~-~~g~i~af~N~C~HRG~~L~~~~~g 95 (154)
T d1ulia1 17 LDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQ-KNGEIRVFLNQCRHRGMRICRADGG 95 (154)
T ss_dssp ECGGGGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSCCSSEE
T ss_pred CCHHHcCCHHHHHHHHHHHhccCCEEEEEhhhCCCCcceeeeecCCcceeEEee-cccceeeeecccccCCceeeecCCC
Confidence 4444445567778899999999999999999997 7999999999999999999 8999999999999999999987765
Q ss_pred CCCeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 150 ENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 150 ~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
.++.|+||||||+||.+|+|+.||......+. ....+.+|..++|.+++|+||||++++
T Consensus 96 ~~~~l~CpYHgW~f~~~G~~~~iP~~~~~~~~---~~~~~~~L~~~~v~~~~G~Ifv~~d~D 154 (154)
T d1ulia1 96 NAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPG---LRKEDWGPLQARVETYKGLIFANWDAD 154 (154)
T ss_dssp ECSCEECTTTCCEECTTCCEEECTTHHHHCTT---CCGGGSSCCEEEEEEETTEEEEECCTT
T ss_pred ccceEEeeeceeEEecCCccccCCcccccCCC---CChHHCCCeEEeEEEECCEEEEEeCCC
Confidence 56789999999999999999999965432111 123456899999999999999999753
|
| >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
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| >d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
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| >d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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| >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
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| >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
| >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} | Back information, alignment and structure |
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| >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} | Back information, alignment and structure |
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| >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
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| >d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
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| >d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} | Back information, alignment and structure |
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| >d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
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| >d1z01a2 d.129.3.3 (A:164-442) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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| >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
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| >d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} | Back information, alignment and structure |
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| >d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} | Back information, alignment and structure |
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| >d2bmoa2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} | Back information, alignment and structure |
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| >d1ulia2 d.129.3.3 (A:171-451) Biphenyl dioxygenase large subunit BphA1, C-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} | Back information, alignment and structure |
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| >d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase cumA1 {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
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