Citrus Sinensis ID: 009184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-
Protein Sequence
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Secondary Structure (PSIPRED)
cccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccccccccc
Coil and Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrreDNMVEIRKNKREESLQKKRREglqnqqplandvnapgtakklenlpVMVAGVwsndsgvqyeCTTQFRKLLsiersppieevirsgvvprfVEFLLREDYPQLQFEAAWALtniasgtsehtkVVIDHGAVPIFVKLlyspsddvREQAVWALGniagdsprcrdlvlsqgglvpllaqlngqpklsmLRNATWTlsnfcrgkpqppfdqvspalpaLAHLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVfprlaeflmhpspsvlipalrtvgnivtgddmqtQCVIEYQALPCLLNLLsgnykksikkeacwtvsnitagnrEQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISnatsggtheQIKFLVIQGCikplcdllvcpdpriVTVCLEGLENILKVGEAeknlgntdvNVFTQMIDDAEGLEKIEslqthdnaEIYEKSVKLLETYwlddedetmppgdasqpgfgfggngnppapsggfnfs
Flexible Loop (DISEMBL)
mslrpnskadsrrnkykvavdadegrrrrednmveirknkreeslqkkrreglqnqqplandvnapgtakKLENLPVMVAGVWSNDSGVQYECTTQFRKLlsiersppieevirsgvVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGeaeknlgntdVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Low Complexity Region (SEG)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQpgfgfggngnppapsggfnfS
Disordered region (IsUnstruct)
***********************************************************************LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK****FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD**********************************
Disordered Region (DISOPRED)
*****************************************EESLQ******************************VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPG*********************FNF*
Disordered Region (DISEMBL)
****************KVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Disordered Region (DISPRO)
******************AVDADEGRRRREDNMVEIRKNKREESLQKK******************GT*KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD*********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	541	2.2.26 [Sep-21-2011]
Q9SLX0	534	Importin subunit alpha-1b	yes	no	0.972	0.985	0.771	0.0
Q96321	532	Importin subunit alpha-1	yes	no	0.975	0.992	0.770	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.972	0.998	0.758	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.955	0.982	0.766	0.0
O04294	531	Importin subunit alpha-2	no	no	0.959	0.977	0.676	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.926	0.970	0.576	1e-166
O35345	536	Importin subunit alpha-7	yes	no	0.909	0.917	0.552	1e-147
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.909	0.917	0.550	1e-146
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.909	0.917	0.550	1e-146
O60684	536	Importin subunit alpha-7	yes	no	0.909	0.917	0.550	1e-146

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/547 (77%), Positives = 465/547 (85%), Gaps = 21/547 (3%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP+ +A+ RR++YKVAVDADEGRRRREDNMVEIRK++REESL KKRR+GL       
Sbjct: 1   MSLRPSERAEVRRSRYKVAVDADEGRRRREDNMVEIRKSRREESLLKKRRDGLPAAAAAA 60

Query: 54  QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI 113
               PL    ++    +KLE LP MV  V S+DS VQ E TTQFRKLLSIERSPPIEEVI
Sbjct: 61  AAASPLL--AHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVI 118

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
            +GVVPRF+ FL REDYPQLQFEAAWALTNIASGTS++TKVV++ GAVPIFVKLL SPS+
Sbjct: 119 NTGVVPRFIAFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSE 178

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           DVREQAVWALGN+AGDSP+CRDLVL+ GGL PLL QLN   KLSMLRNATWTLSNFCRGK
Sbjct: 179 DVREQAVWALGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGK 238

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
           PQP F+QV PAL AL  LIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GVFPRL E 
Sbjct: 239 PQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVEL 298

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           LMHPS SVLIPALRTVGNIVTGDDMQTQCVI++QALPCLLNLL+ N+KKSIKKEACWT+S
Sbjct: 299 LMHPSASVLIPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTIS 358

Query: 354 NITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 413
           NITAGNREQIQ           AVI ANII PLV LL+ AEFDIKKEAAWAISNATSGGT
Sbjct: 359 NITAGNREQIQ-----------AVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGT 407

Query: 414 HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI 473
           H+QIK+LV QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG  DVN + QMI
Sbjct: 408 HDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGAGDVNSYAQMI 467

Query: 474 DDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPA 533
           DDAEGLEKIE+LQ+HDN EIYEK+VK+LE+YWL++ED+ MP GD +Q GF F GN  P  
Sbjct: 468 DDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNGFNF-GNQQPNV 526

Query: 534 PSGGFNF 540
           PSGGFNF
Sbjct: 527 PSGGFNF 533

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/545 (77%), Positives = 469/545 (86%), Gaps = 17/545 (3%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct: 1   MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct: 61  S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct: 240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
           +QIQ            V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIK+L
Sbjct: 360 DQIQT-----------VVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYL 408

Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGL 479
           V QGCIKPLCDLLVCPDPRI+TVCLEGLENILKVGEAEKNLG+T D+N + Q+IDDAEGL
Sbjct: 409 VEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGL 468

Query: 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDE--TMPPG-DASQPGFGFGGNGNPPAPSG 536
           EKIE+LQ+HDN EIYEK+VK+LETYWL++ED+    PPG D SQ GF FGGN   P PSG
Sbjct: 469 EKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGN-QAPVPSG 527

Query: 537 GFNFS 541
           GFNFS
Sbjct: 528 GFNFS 532

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/542 (75%), Positives = 462/542 (85%), Gaps = 16/542 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPNS+ ++RR++YKVAVDA+EGRRRREDNMVEIRKNKREE+L KKRREGL   Q   
Sbjct: 1   MSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +        KKLE LP ++AGVWS+DS +Q ECTTQFRKLLSIER+PPIEEVI+SGVVPR
Sbjct: 61  STAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL R+DYPQLQFEAAWALTNIASGTSE+TKVVID+G+VPIF++LL SPSDDVREQAV
Sbjct: 121 FVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGNIAGDSP+ RDLVL  G LV LLAQ N Q KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 181 WALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
              ALP L  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL E L+H SPS
Sbjct: 241 TKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD+QTQ +I++ ALPCL+NLL+ NYKKSIKKEACWT+SNITAGNR
Sbjct: 301 VLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNR 360

Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
            QIQ+           VIEA II PLV LL+NAEF+IKKEAAWAISNATSGG H+QIKFL
Sbjct: 361 NQIQI-----------VIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFL 409

Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD-VNVFTQMIDDAEGL 479
           V QGCIKPLCDLLVCPDPRIVTVCLEGLENILK+GEA+K+LGNT+ VNV+ Q+ID+AEGL
Sbjct: 410 VSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGL 469

Query: 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFN 539
           EKIE+LQ+HDN EIYEK+VK+LETYWL++ED    P   ++  F FGG  +   PSGGFN
Sbjct: 470 EKIENLQSHDNTEIYEKAVKILETYWLEEED---VPVSLNEDQFEFGG-ADISLPSGGFN 525

Query: 540 FS 541
           FS
Sbjct: 526 FS 527

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/532 (76%), Positives = 458/532 (86%), Gaps = 15/532 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 1   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 61  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 120 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
           +QIQ           AVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIK+L
Sbjct: 360 DQIQ-----------AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYL 408

Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE 480
           V +GCIKPLCDLL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+QMID+AEGLE
Sbjct: 409 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLE 468

Query: 481 KIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQP---GFGFGGNG 529
           KIE+LQ+HDN EIYEK+VK+LE YW+D+ED+TM     + P    F FG  G
Sbjct: 469 KIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 520

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/551 (67%), Positives = 439/551 (79%), Gaps = 32/551 (5%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL------- 53
           MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR           
Sbjct: 1   MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query: 54  -QNQQPLANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE 111
            Q +Q L+       +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI E
Sbjct: 61  GQTEQDLS-------SANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINE 113

Query: 112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP 171
           V++SGVVPR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S 
Sbjct: 114 VVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSA 173

Query: 172 SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           S+DVREQAVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCR
Sbjct: 174 SEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCR 233

Query: 232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA 291
           GKP P F+Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL 
Sbjct: 234 GKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLI 293

Query: 292 EFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT 351
           + L H SPSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT
Sbjct: 294 QLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWT 353

Query: 352 VSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG 411
           +SNITAGN +QIQ           AVI+A II  LV +L++AEF++KKEAAW ISNATSG
Sbjct: 354 ISNITAGNADQIQ-----------AVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSG 402

Query: 412 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFT 470
           GTH+QIKF+V QGCIKPLCDLL CPD ++VTVCLE LENIL VGEAEKNLG+T + N++ 
Sbjct: 403 GTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYA 462

Query: 471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL-DDEDETMPPGDASQPGFGFGGNG 529
           QMID+AEGLEKIE+LQ+HDN +IY+K+VK+LET+W  D+E+E      A Q GF FG   
Sbjct: 463 QMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWTEDNEEEGNDENHAPQSGFQFGSTN 522

Query: 530 NPPAPSGGFNF 540
            PP   G FNF
Sbjct: 523 VPP---GQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  584 bits (1506), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 306/531 (57%), Positives = 384/531 (72%), Gaps = 30/531 (5%)

Query: 7   SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND--VN 64
           SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D  +N
Sbjct: 4   SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN 63

Query: 65  APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
                ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct: 64  -----QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALG
Sbjct: 119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLN--GQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242
           NIAGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V 
Sbjct: 179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
            +LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V 
Sbjct: 239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query: 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
            PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ Q
Sbjct: 299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQ 357

Query: 363 IQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 422
           IQ            VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI FLV 
Sbjct: 358 IQ-----------QVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVS 406

Query: 423 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI 482
           QGC+KPLCDLL   DPRI+ V LEG+ENIL  G+ E  +  T VN + ++I+DA+GL KI
Sbjct: 407 QGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQV--TGVNPYKKIIEDADGLGKI 464

Query: 483 ESLQTHDNAEIYEKSVKLLETYWLD---DEDETMPPGDASQPGFGFGGNGN 530
             LQ H N + +EK  +++ TY  D   DE + MP G +    F F    N
Sbjct: 465 YDLQHHMNKDTFEKVSRIISTYLEDEQEDEGDLMPEGSS----FSFSNQTN 511

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  523 bits (1347), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 285/516 (55%), Positives = 357/516 (69%), Gaps = 24/516 (4%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQ           AVI+ANI   L
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQ-----------AVIDANIFPVL 383

Query: 387 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 446
           + +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 447 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 505
           GLENIL++GE E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 444 GLENILRLGEQESKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 503

Query: 506 LDDEDETMPPG-DASQPGFGFGGNGNPPAPSGGFNF 540
           ++D+D ++ P  D +Q  F F     P AP  GF  
Sbjct: 504 VEDDDSSLAPQVDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  520 bits (1338), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/516 (55%), Positives = 356/516 (68%), Gaps = 24/516 (4%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+D  
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDPD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI + GVV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386
            ALPCLL+LLS + K+SI+KEACWT+SNITAGNR QIQ           AVI+ANI   L
Sbjct: 336 SALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQ-----------AVIDANIFPVL 383

Query: 387 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 446
           + +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 447 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 505
           GLENIL++GE E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 444 GLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 503

Query: 506 LDDEDETMPPG-DASQPGFGFGGNGNPPAPSGGFNF 540
           ++D+D ++ P  D +Q  F F     P AP  GF  
Sbjct: 504 VEDDDSSLAPQVDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/516 (55%), Positives = 355/516 (68%), Gaps = 24/516 (4%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386
            ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQ           AVI+ANI   L
Sbjct: 336 SALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQ-----------AVIDANIFPVL 383

Query: 387 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 446
           + +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 447 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 505
           GLENIL++GE E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 444 GLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 503

Query: 506 LDDEDETMPPG-DASQPGFGFGGNGNPPAPSGGFNF 540
           ++D+D ++ P  D +Q  F F     P AP  GF  
Sbjct: 504 VEDDDSSLAPQVDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/516 (55%), Positives = 355/516 (68%), Gaps = 24/516 (4%)

Query: 34  VEIRKNKREESLQKKRREGLQNQQP-----LANDVNAPGTAKKLENLPVMVAGVWSNDSG 88
           +++RK KRE+ L K+R   L N++      L  D     T  +      MV  ++S+DS 
Sbjct: 36  IQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSD 95

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +Q   T +FRKLLS E SPPI+EVI +  VV RFVEFL R +   LQFEAAWALTNIASG
Sbjct: 96  LQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASG 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
           TS+ TK+VI+ GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD VL+   L PLL
Sbjct: 156 TSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLL 215

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L    +L+M RNA W LSN CRGK P P F +VSP LP L+ L+ S+D ++L DACWA
Sbjct: 216 TLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWA 275

Query: 267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY 326
           LSYLSDG N+KIQAVI++GV  RL E LMH    V  PALR VGNIVTGDD+QTQ ++  
Sbjct: 276 LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNC 335

Query: 327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL 386
            ALPCLL+LLS   K+SI+KEACWT+SNITAGNR QIQ           AVI+ANI   L
Sbjct: 336 SALPCLLHLLSSP-KESIRKEACWTISNITAGNRAQIQ-----------AVIDANIFPVL 383

Query: 387 VALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE 446
           + +L+ AEF  +KEAAWAI+NATSGGT EQI++LV  GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 447 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW- 505
           GLENIL++GE E     + VN +  +I++A GL+KIE LQ+H+N EIY+K+  L+E Y+ 
Sbjct: 444 GLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 503

Query: 506 LDDEDETMPPG-DASQPGFGFGGNGNPPAPSGGFNF 540
           ++D+D ++ P  D +Q  F F     P AP  GF  
Sbjct: 504 VEDDDSSLAPQVDETQQQFIF---QQPEAPMEGFQL 536

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	541
255542844	531	importin alpha, putative [Ricinus commun	0.977	0.996	0.819	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.977	0.994	0.808	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.977	0.994	0.808	0.0
224123916	529	predicted protein [Populus trichocarpa]	0.974	0.996	0.809	0.0
224122988	529	predicted protein [Populus trichocarpa]	0.975	0.998	0.809	0.0
225450645	527	PREDICTED: importin subunit alpha-1 isof	0.972	0.998	0.808	0.0
359487526	528	PREDICTED: importin subunit alpha-1 isof	0.972	0.996	0.806	0.0
356564581	530	PREDICTED: importin subunit alpha-1-like	0.977	0.998	0.806	0.0
357441839	533	Importin subunit alpha-1 [Medicago trunc	0.977	0.992	0.801	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.977	0.996	0.804	0.0

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/543 (81%), Positives = 489/543 (90%), Gaps = 14/543 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  QP+ 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQPMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS+DS +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAVEKKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+T+VVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 120 FVEFLMREDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 180 WALGNVAGDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
           EQIQ           AVIEANIIGPLV LLENAEFDIKKEAAWAISNATSGGTH+QIK+L
Sbjct: 360 EQIQ-----------AVIEANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKYL 408

Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD--VNVFTQMIDDAEG 478
           V QGCIKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+KNLGN D  VN++ QMIDDAEG
Sbjct: 409 VSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNLGNNDGGVNLYAQMIDDAEG 468

Query: 479 LEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGF 538
           LEKIE+LQ+HDN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FGG+  P  PSGGF
Sbjct: 469 LEKIENLQSHDNIEIYEKAVKILETYWLEEEDETMPPGDASQSGFQFGGSDMPTIPSGGF 528

Query: 539 NFS 541
           NFS
Sbjct: 529 NFS 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/544 (80%), Positives = 484/544 (88%), Gaps = 15/544 (2%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDADEGRRRRED MVEIRKN+REESLQKKRREG Q QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDADEGRRRREDTMVEIRKNRREESLQKKRREGFQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  IPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 418
           N++QIQ           AVIEAN+I PLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK
Sbjct: 360 NKQQIQ-----------AVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIK 408

Query: 419 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAE 477
           FLV QGCIKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GNT DVN++ QMID+AE
Sbjct: 409 FLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAE 468

Query: 478 GLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGG 537
           GLEKIE+LQ+HDN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG +  P  PSGG
Sbjct: 469 GLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPAVPSGG 528

Query: 538 FNFS 541
           FNF+
Sbjct: 529 FNFN 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/544 (80%), Positives = 485/544 (89%), Gaps = 15/544 (2%)

Query: 1   MSLRP--NSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RP  NS+ + RRN+YKVAVDA+EGRRRRED MVEIRKN+REESLQKKRREGLQ QQ 
Sbjct: 1   MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           +   V++    KKLE+LP MV GVW++D+ +Q E TTQFRKLLSIERSPPIEEVI++GVV
Sbjct: 60  MPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDDMQTQ +I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 418
           N++QIQ           AVIEAN+I PLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK
Sbjct: 360 NKQQIQ-----------AVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIK 408

Query: 419 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAE 477
           FLV QGCIKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GNT DVN++ QMID+AE
Sbjct: 409 FLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAE 468

Query: 478 GLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGG 537
           GLEKIE+LQ+HDN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG +  P  PSGG
Sbjct: 469 GLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSDAPTVPSGG 528

Query: 538 FNFS 541
           FNF+
Sbjct: 529 FNFN 532

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/541 (80%), Positives = 486/541 (89%), Gaps = 14/541 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDADEGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAIP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVWS D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  AALHSSAAEKKLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +Q+LPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
           EQIQ           AVIEAN+IGPLV LL+NAEFDIKKE+AWAISNATSGGTHEQIK+L
Sbjct: 360 EQIQ-----------AVIEANLIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKYL 408

Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGL 479
           V QGCIKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+KN+ +T  VN++ QMIDDAEGL
Sbjct: 409 VSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGL 468

Query: 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFN 539
           EKIE+LQ+HDN+EIYEK+VK+LETYWL+++DETMPPGDASQ GF FGG+  P  PSGGFN
Sbjct: 469 EKIENLQSHDNSEIYEKAVKILETYWLEEDDETMPPGDASQSGFQFGGDA-PAVPSGGFN 527

Query: 540 F 540
           F
Sbjct: 528 F 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/542 (80%), Positives = 483/542 (89%), Gaps = 14/542 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKVAVDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q + 
Sbjct: 1   MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQAMP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE+LP MVAGVW+ D  +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 60  ASLHSSAAEKKLEHLPSMVAGVWTEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFV+LL SPSDDVREQAV
Sbjct: 120 FVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPALA LIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 VKPALPALARLIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ NYKKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
           EQIQ           AVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG HEQIK+L
Sbjct: 360 EQIQ-----------AVIEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKYL 408

Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGL 479
           V QGCIKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+KN+  T  VN++ QMIDDAEGL
Sbjct: 409 VSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNVSETGGVNLYAQMIDDAEGL 468

Query: 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFN 539
           EKIE+LQ+HDN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FGG   P  PSGGFN
Sbjct: 469 EKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFQFGGEA-PAVPSGGFN 527

Query: 540 FS 541
           FS
Sbjct: 528 FS 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450645|ref|XP_002282816.1| PREDICTED: importin subunit alpha-1 isoform 1 [Vitis vinifera] gi|296089748|emb|CBI39567.3| unnamed protein product [Vitis vinifera]

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/542 (80%), Positives = 483/542 (89%), Gaps = 16/542 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFDQ
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 240 TKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 299

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 300 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 359

Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
           EQIQ           AVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK+L
Sbjct: 360 EQIQ-----------AVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKYL 408

Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGL 479
           V Q  IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG+T +VN++ QMIDDAEGL
Sbjct: 409 VSQASIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGSTREVNLYAQMIDDAEGL 468

Query: 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFN 539
           EKIE+LQ+HDN EIYEK+VK+LETYWL++EDETMPPGD+SQPGF F   G  P P+GGFN
Sbjct: 469 EKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDSSQPGFRF---GEVPVPTGGFN 525

Query: 540 FS 541
           FS
Sbjct: 526 FS 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487526|ref|XP_003633608.1| PREDICTED: importin subunit alpha-1 isoform 2 [Vitis vinifera]

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/543 (80%), Positives = 483/543 (88%), Gaps = 17/543 (3%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+++ + RRN+YKV+VDA+EGRRRREDNMVEIRKN+REESLQKKRREGLQ  Q L 
Sbjct: 1   MSLRPSARTEVRRNRYKVSVDAEEGRRRREDNMVEIRKNRREESLQKKRREGLQ-AQTLP 59

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +++    KKLE LP MVAGVW++DS +Q E TTQFRKLLSIER PPIEEVI+SGVVPR
Sbjct: 60  ASIHSAAVEKKLEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPR 119

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTS++TKVVIDHGAVP+FVKLL SPSDDVREQAV
Sbjct: 120 FVEFLVREDFPQLQFEAAWALTNIASGTSDNTKVVIDHGAVPVFVKLLGSPSDDVREQAV 179

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD- 239
           WALGN+AGDSPRCRDLVL  G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPFD 
Sbjct: 180 WALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQ 239

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
           Q  PALPAL  LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSP
Sbjct: 240 QTKPALPALERLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSP 299

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
           SVLIPALRTVGNIVTGDDMQTQC+I +QALPCLLNLL+ N+KKSIKKEACWT+SNITAGN
Sbjct: 300 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLNLLTNNHKKSIKKEACWTISNITAGN 359

Query: 360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 419
           +EQIQ           AVIEANIIGPLV LL+NAEFDIKKEAAWAISNATSGG+HEQIK+
Sbjct: 360 KEQIQ-----------AVIEANIIGPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIKY 408

Query: 420 LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEG 478
           LV Q  IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG+T +VN++ QMIDDAEG
Sbjct: 409 LVSQASIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGSTREVNLYAQMIDDAEG 468

Query: 479 LEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGF 538
           LEKIE+LQ+HDN EIYEK+VK+LETYWL++EDETMPPGD+SQPGF F   G  P P+GGF
Sbjct: 469 LEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDSSQPGFRF---GEVPVPTGGF 525

Query: 539 NFS 541
           NFS
Sbjct: 526 NFS 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/542 (80%), Positives = 478/542 (88%), Gaps = 13/542 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMVEIRK+KREESL KKRREGLQ QQ   
Sbjct: 1   MSLRPNARTEIRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLLKKRREGLQAQQQFP 60

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +      KKLE+LP MVAGVWS+D+ +Q E TTQFRKLLSIERSPPIEEVI++GVVPR
Sbjct: 61  APLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERSPPIEEVIQAGVVPR 120

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQAV
Sbjct: 121 FVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAV 180

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSPRCRDLVLSQG LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+Q
Sbjct: 181 WALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQ 240

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
           V PALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV  RL + L+HPSPS
Sbjct: 241 VRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCARLVQLLIHPSPS 300

Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDDMQTQC+I + ALPCLLNLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct: 301 VLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNK 360

Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
           EQIQ            VIEA ++ PLV LL+NAEFDIKKEAAWAISNATSGG HEQIK+L
Sbjct: 361 EQIQT-----------VIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQIKYL 409

Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGL 479
           V QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK+LGNT DVN + QMIDDAEGL
Sbjct: 410 VSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNEYAQMIDDAEGL 469

Query: 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFN 539
           EKIE+LQ+HDN EIYEK+VK+LETYWL++EDET+P GD +QPGF F GN   P PSGGFN
Sbjct: 470 EKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNF-GNNELPVPSGGFN 528

Query: 540 FS 541
           FS
Sbjct: 529 FS 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441839|ref|XP_003591197.1| Importin subunit alpha-1 [Medicago truncatula] gi|355480245|gb|AES61448.1| Importin subunit alpha-1 [Medicago truncatula]

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/544 (80%), Positives = 482/544 (88%), Gaps = 15/544 (2%)

Query: 1   MSLRPN--SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP 58
           MS RPN  S+ + RRN+YKVAVDA+EGRRRRED MVEIRKN+REESL KKRREGLQ QQ 
Sbjct: 1   MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQ- 59

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
           + + +++    KKLE+LP MVAGVWS+D+ +Q E TTQFRKLLSIER+PPIEEVI++GVV
Sbjct: 60  IPSALHSNVVEKKLEHLPTMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVV 119

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
            RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQ
Sbjct: 120 SRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQ 179

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           AVWALGN+AGDSPRCRDLVL  G LVPLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF
Sbjct: 180 AVWALGNVAGDSPRCRDLVLGHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPF 239

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
           DQV PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPS
Sbjct: 240 DQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
           PSVLIPALRTVGNIVTGDD+QTQ +I +QALPCL NLL+ NYKKSIKKEACWT+SNITAG
Sbjct: 300 PSVLIPALRTVGNIVTGDDLQTQVIINHQALPCLYNLLTNNYKKSIKKEACWTISNITAG 359

Query: 359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 418
           N++QIQ           AVIEANI GPLV+LL+NAEFDIKKEAAWAISNATSGG+HEQIK
Sbjct: 360 NKQQIQ-----------AVIEANIFGPLVSLLQNAEFDIKKEAAWAISNATSGGSHEQIK 408

Query: 419 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAE 477
           +LV QGCIKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+KN+GN  DVN++ QMIDDAE
Sbjct: 409 YLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNNGDVNLYAQMIDDAE 468

Query: 478 GLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGG 537
           GLEKIE+LQ+HDN EIYEK+VK+LETYWL++EDETMPPGDASQ GF FG    P  PSGG
Sbjct: 469 GLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSAEVPSVPSGG 528

Query: 538 FNFS 541
           FNF+
Sbjct: 529 FNFN 532

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/543 (80%), Positives = 481/543 (88%), Gaps = 14/543 (2%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRPN++ + RRN+YKVAVDADEGRRRREDNMVEIRK+KREESLQKKRREGLQ QQ   
Sbjct: 1   MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFP 60

Query: 61  NDVNAPGTA-KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP 119
             + A     KKLE+LP MVAGVWS+D+  Q E TTQFRKLLSIERSPPIEEVI++GVVP
Sbjct: 61  TPLQASSIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVP 120

Query: 120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQA 179
           RFVEFL+RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL SPSDDVREQA
Sbjct: 121 RFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQA 180

Query: 180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD 239
           VWALGN+AGDSPRCRDLVLS G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQPPF+
Sbjct: 181 VWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFE 240

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
           QV  ALPAL  L+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL + L+HPSP
Sbjct: 241 QVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSP 300

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
           SVLIPALRTVGNIVTGDDMQTQ +I + ALPCLL+LL+ N+KKSIKKEACWT+SNITAGN
Sbjct: 301 SVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGN 360

Query: 360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 419
           R+QIQ           AVIEA +I PLV LL+NAEFDIKKEAAWAISNATSGGTHEQIK+
Sbjct: 361 RDQIQ-----------AVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKY 409

Query: 420 LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEG 478
           LV QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK+LGNT DVN++ QMID+AEG
Sbjct: 410 LVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDEAEG 469

Query: 479 LEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGF 538
           LEKIE+LQ+HDN EIYEK+VK+LETYWL+D+DET+P GD +QPGF F GN + P PSGGF
Sbjct: 470 LEKIENLQSHDNNEIYEKAVKILETYWLEDDDETLPAGDGAQPGFNF-GNNDLPVPSGGF 528

Query: 539 NFS 541
           NFS
Sbjct: 529 NFS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	541
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.939	0.949	0.786	5.2e-216
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.939	0.954	0.776	2.6e-214
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.924	0.929	0.720	1.5e-195
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.924	0.941	0.694	9.8e-190
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.940	0.944	0.690	7.9e-188
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.909	0.947	0.615	2.8e-160
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.881	0.903	0.612	7.6e-151
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.911	0.955	0.583	7.9e-149
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.902	0.885	0.588	8.1e-147
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.914	0.895	0.586	8.4e-145

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2087 (739.7 bits), Expect = 5.2e-216, P = 5.2e-216
 Identities = 412/524 (78%), Positives = 457/524 (87%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ-NQQP- 58
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESLQKKRREGLQ NQ P 
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQ 60

Query:    59 -LANDVNAPGTA-KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
                + V A  T  KKLE+LP MV GVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +G
Sbjct:    61 FAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAG 120

Query:   117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
             VVPRFVEFL REDYPQLQFEAAWALTNIASGTSE+TKVVI+HGAVPIFV+LL S SDDVR
Sbjct:   121 VVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVR 180

Query:   177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
             EQAVWALGN+AGDSPRCRDLVL QG L+PLL+QLN   KLSMLRNATWTLSNFCRGKPQP
Sbjct:   181 EQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQP 240

Query:   237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             PFDQV PALPAL  LIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRL E L H
Sbjct:   241 PFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
              SPSVLIPALR++GNIVTGDD+QTQCVI + AL  LL+LL+ N+KKSIKKEACWT+SNIT
Sbjct:   301 QSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 416
             AGNR+QIQ           AV EA +I PLV LL+NAEFDIKKEAAWAISNATSGG+ +Q
Sbjct:   361 AGNRDQIQ-----------AVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQ 409

Query:   417 IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDD 475
             IK++V QG +KPLCDLLVCPDPRI+TVCLEGLENILKVGEAEK  GNT DVN + Q+IDD
Sbjct:   410 IKYMVEQGVVKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLIDD 469

Query:   476 AEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDAS 519
             AEGLEKIE+LQ+HDN+EIYEK+VK+LETYWL++EDET+PPGD S
Sbjct:   470 AEGLEKIENLQSHDNSEIYEKAVKILETYWLEEEDETLPPGDPS 513

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2071 (734.1 bits), Expect = 2.6e-214, P = 2.6e-214
 Identities = 407/524 (77%), Positives = 455/524 (86%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
             MSLRPN+K + RRN+YKVAVDA+EGRRRREDNMVEIRK+KREESL KKRREG+Q  Q   
Sbjct:     1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60

Query:    61 NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
             +  +A    KKL++L  MVAGVWS+D  +Q E TTQFRKLLSIERSPPIEEVI +GVVPR
Sbjct:    61 S-ASAASVDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPR 119

Query:   121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
             FVEFL +EDYP +QFEAAWALTNIASGTS+HTKVVIDH AVPIFV+LL SPSDDVREQAV
Sbjct:   120 FVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAV 179

Query:   181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
             WALGN+AGDSPRCRDLVL  G L+PLL QLN   KLSMLRNATWTLSNFCRGKPQP FDQ
Sbjct:   180 WALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQ 239

Query:   241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             V PALPAL  LIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+L E L+H SPS
Sbjct:   240 VKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPS 299

Query:   301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
             VLIPALRTVGNIVTGDD+QTQCVI   ALPCL NLL+ N+KKSIKKEACWT+SNITAGN+
Sbjct:   300 VLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNK 359

Query:   361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
             +QIQ            V+EAN+I PLV+LL+NAEFDIKKEAAWAISNATSGG+H+QIK+L
Sbjct:   360 DQIQT-----------VVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYL 408

Query:   421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAEGL 479
             V QGCIKPLCDLLVCPDPRI+TVCLEGLENILKVGEAEKNLG+T D+N + Q+IDDAEGL
Sbjct:   409 VEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGL 468

Query:   480 EKIESLQTHDNAEIYEKSVKLLETYWLDDED-ETM-PPG-DASQ 520
             EKIE+LQ+HDN EIYEK+VK+LETYWL++ED ET  PPG D SQ
Sbjct:   469 EKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQ 512

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1894 (671.8 bits), Expect = 1.5e-195, P = 1.5e-195
 Identities = 373/518 (72%), Positives = 434/518 (83%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREG--LQNQQP 58
             MSLRP+++A+ R+  YK  VDADE RRRREDN+VEIRKNKRE+SL KKRREG  LQ Q P
Sbjct:     1 MSLRPSTRAELRKKIYKTGVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLP 60

Query:    59 LANDVNAPGTA----KKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR 114
             L   ++ P TA    K+LE +P+MV GV+S+D   Q E TTQFRKLLSIERSPPI+EVI+
Sbjct:    61 LGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIK 120

Query:   115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
             +GV+PRFVEFL R D+PQLQFEAAWALTN+ASGTS+HT+VVI+ GAVPIFVKLL S SDD
Sbjct:   121 AGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDD 180

Query:   175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
             VREQAVWALGN+AGDSP CR+LVL+ G L PLLAQLN   KLSMLRNATWTLSNFCRGKP
Sbjct:   181 VREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKP 240

Query:   235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
               PF+QV PALP L  LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGV PRL E L
Sbjct:   241 PTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELL 300

Query:   295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
              H SP+VLIPALRTVGNIVTGDD QTQ +IE   LP L NLL+ N+KKSIKKEACWT+SN
Sbjct:   301 GHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISN 360

Query:   355 ITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 414
             ITAGN+ QI+           AV+ A II PLV LL+NAEFDIKKEAAWAISNATSGG+H
Sbjct:   361 ITAGNKLQIE-----------AVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSH 409

Query:   415 EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLG-NTDVNVFTQMI 473
             EQI++LV QGCIKPLCDLL+CPDPRIVTVCLEGLENILKVGEA+K +G N+ VN++ Q+I
Sbjct:   410 EQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQII 469

Query:   474 DDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE 511
             ++++GL+K+E+LQ+HDN EIYEK+VK+LE YW ++E+E
Sbjct:   470 EESDGLDKVENLQSHDNNEIYEKAVKILERYWAEEEEE 507

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1839 (652.4 bits), Expect = 9.8e-190, P = 9.8e-190
 Identities = 357/514 (69%), Positives = 422/514 (82%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKR-REGLQNQQPL 59
             MSLRP++K + RRN+YKVAVDA+EGRRRREDN+VEIRKNKREE+LQKKR    +      
Sbjct:     1 MSLRPSAKTEVRRNRYKVAVDAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSAT 60

Query:    60 ANDVNAPGTAKKL-ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
                     +A +L +NLP MVAG+WS DS  Q E T   RKLLSIE++PPI EV++SGVV
Sbjct:    61 GQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVV 120

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PR V+FL R+D+P+LQFEAAWALTNIASGTSE+T V+I+ GAVPIF++LL S S+DVREQ
Sbjct:   121 PRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQ 180

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             AVWALGN+AGDSP+CRDLVLS G + PLL+Q N   KLSMLRNATWTLSNFCRGKP P F
Sbjct:   181 AVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAF 240

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +Q  PALP L  L+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL + L H S
Sbjct:   241 EQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSS 300

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             PSVLIPALRT+GNIVTGDD+QTQ V++ QALPCLLNLL  NYKKSIKKEACWT+SNITAG
Sbjct:   301 PSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAG 360

Query:   359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 418
             N +QIQ           AVI+A II  LV +L++AEF++KKEAAW ISNATSGGTH+QIK
Sbjct:   361 NADQIQ-----------AVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIK 409

Query:   419 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDDAE 477
             F+V QGCIKPLCDLL CPD ++VTVCLE LENIL VGEAEKNLG+T + N++ QMID+AE
Sbjct:   410 FMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAE 469

Query:   478 GLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE 511
             GLEKIE+LQ+HDN +IY+K+VK+LET+W +D +E
Sbjct:   470 GLEKIENLQSHDNNDIYDKAVKILETFWTEDNEE 503

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1821 (646.1 bits), Expect = 7.9e-188, P = 7.9e-188
 Identities = 363/526 (69%), Positives = 424/526 (80%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQ---Q 57
             MS +P++K + RRN+YKV+VDADEGRRRREDNMVEIRKNKREE+LQKKRREG       Q
Sbjct:     1 MSYKPSAKTEVRRNRYKVSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQ 60

Query:    58 PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             P  +  ++  T  +LEN+  M+AGV S D  +Q E T  FR+LLSIER+PPI EV++SGV
Sbjct:    61 PGQDFSSSLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGV 120

Query:   118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
             VP  V+FL R+D+ QLQFEAAWALTNIASGTSE+T+V+ID GAVP+FVKLL S S++VRE
Sbjct:   121 VPHIVQFLSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVRE 180

Query:   178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
             QAVWALGN+AGDSP+CRD VLS   ++ LLAQ +   KLSMLRNATWTLSNFCRGKPQP 
Sbjct:   181 QAVWALGNVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPA 240

Query:   238 FDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
             F+Q    ALPAL  L+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRL + L H
Sbjct:   241 FEQQTKAALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAH 300

Query:   297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
             PSPSVLIPALRT+GNIVTGDD+QTQ VI  QALP LLNLL   YKKSIKKEACWT+SNIT
Sbjct:   301 PSPSVLIPALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNIT 360

Query:   357 AGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 416
             AGN  QIQ            V +A II PL+ LLE  EF+IKKEA WAISNATSGG H+Q
Sbjct:   361 AGNTSQIQ-----------EVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQ 409

Query:   417 IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT-DVNVFTQMIDD 475
             IKFLV QGCI+PLCDLL CPDPR+VTV LEGLENILKVGEAEKNLGNT + N++ QMI+D
Sbjct:   410 IKFLVSQGCIRPLCDLLPCPDPRVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIED 469

Query:   476 AEGLEKIESLQTHDNAEIYEKSVKLLETYWL-DDEDETMPPGDASQ 520
             A+GL+KIE+LQ+HDN EIYEK+VK+LE+YW  DDE+E +   DA +
Sbjct:   470 ADGLDKIENLQSHDNNEIYEKAVKILESYWAADDEEEDIGGVDAPE 515

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
 Identities = 315/512 (61%), Positives = 389/512 (75%)

Query:     1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL--QNQQP 58
             MSLRP++K + RR +YKV+VDA+EGRRRRED +VEIRK+KR E+L KKRR  +   + + 
Sbjct:     1 MSLRPSTKTEIRRIRYKVSVDAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVLPPDYKL 60

Query:    59 LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
             ++ND   P   + L  +  M+ GV+S+D  +Q E TT+FR +LS +RSPP + VI+SGVV
Sbjct:    61 ISND---P--FESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVV 115

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             PRFVEFL ++D P+LQFEAAWALTNIASG SEHTKVVIDHG VP+FV+LL SP DDVREQ
Sbjct:   116 PRFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQ 175

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
             A+W LGN+AGDS +CRD VL+ G  +PLL QLN    LS+LRNATWTLSNF RGKP PPF
Sbjct:   176 AIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPF 235

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             D V   LP L  L++S+D++VL DACWALS LSD +N+ IQ+VIEAGV PRL E L H S
Sbjct:   236 DLVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHAS 295

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             P VL+PALR +GNIV+G+  QT CVI    LP L +LL+ N+ + I++EACWT+SNITAG
Sbjct:   296 PVVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAG 355

Query:   359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 418
               EQIQ           +VI+AN+I  LV L ++AEFDIKKEA WAISNA+ GG+  QIK
Sbjct:   356 LEEQIQ-----------SVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIK 404

Query:   419 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 478
             +LV Q CIK LCD+LVCPD RI+ V L GLE IL  GE +KNL   DVN ++QMI+DAEG
Sbjct:   405 YLVEQNCIKALCDILVCPDLRIILVSLGGLEMILIAGEVDKNL--RDVNCYSQMIEDAEG 462

Query:   479 LEKIESLQTHDNAEIYEKSVKLLETYWLDDED 510
             LEKIE+LQ H N EIYEK+VK+L+TY L +ED
Sbjct:   463 LEKIENLQHHGNNEIYEKAVKILQTYGLVEED 494

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
 Identities = 312/509 (61%), Positives = 376/509 (73%)

Query:    12 RRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKK 71
             RR+ YK  VD   GRRRRED+MVEIRK KREESL KKRRE L +  P A+ ++     +K
Sbjct:    10 RRSGYKAVVDGVGGRRRREDDMVEIRKAKREESLLKKRREALPHS-PSADSLD-----QK 63

Query:    72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDY 130
             L      ++ +WS++  +  E TTQ R LL  E  +  +EEVI++G+VPRFVEFL  +D 
Sbjct:    64 L------ISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDS 117

Query:   131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             PQLQFEAAWALTNIASGTSE+T+VVIDHGAV I V+LL SP D VREQ VWALGNI+GDS
Sbjct:   118 PQLQFEAAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDS 177

Query:   191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             PRCRD+VL    L  LL QLN   KLSML NA WTLSN CRGKPQPPFDQVS ALPALA 
Sbjct:   178 PRCRDIVLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQ 237

Query:   251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             LI  +D E+L   CWAL YLSDG+N+KIQAVIEA V  RL    +H SPSV+ PALRT+G
Sbjct:   238 LIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIG 297

Query:   311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
             NIVTG+D QTQ +I+ QALPCL+NLL G+Y K+I+KEACWTVSNITAG + QIQ      
Sbjct:   298 NIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQ------ 351

Query:   371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC 430
                  AV +A+I   LV LL+N+E D+KKEAAWAI NA +GG+++QI FLV Q CIKPLC
Sbjct:   352 -----AVFDADICPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLC 406

Query:   431 DLLVCPDPRIVTVCLEGLENILKVGE------AEK--NLGNTDVNVFTQMIDDAEGLEKI 482
             DLL C D ++V VCLE L+ ILKVGE      AE       T+VN   Q+I++AEGLEKI
Sbjct:   407 DLLTCSDTQLVMVCLEALKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKI 466

Query:   483 ESLQTHDNAEIYEKSVKLLETYWLDDEDE 511
             E LQ+H+N +IYE +VK+LETYW+++E+E
Sbjct:   467 EGLQSHENNDIYETAVKILETYWMEEEEE 495

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
 Identities = 303/519 (58%), Positives = 381/519 (73%)

Query:     7 SKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND--VN 64
             SK ++R+++YK ++D+DE RR+RE+  + IRKNKREESL KKR + +    P+  D  +N
Sbjct:     4 SKQETRKSQYKKSIDSDESRRKREEASLSIRKNKREESLLKKRTQAVPGSTPVKVDSLIN 63

Query:    65 APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
                  ++LE LP +VA + S +  +  + TT FRKLLSIE+SPPIEEVI++G+VPR V+F
Sbjct:    64 -----QRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKF 118

Query:   125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
             L  +D+PQLQFEAAWALTNIASGT E T+VVI++GA+ +FV LL SP DDVREQAVWALG
Sbjct:   119 LYMQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALG 178

Query:   185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQVS 242
             NIAGDS  CRDLVLS   L PLL+ L      K+SM+RNATWTLSNFCRGKPQPPF+ V 
Sbjct:   179 NIAGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVR 238

Query:   243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
              +LP LA LI+  D+EVL DACWALSYLSDG+N++IQ VI+A V  ++ E L HP+ +V 
Sbjct:   239 ASLPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQ 298

Query:   303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
              PALRT+GNIVTGDD QTQ V+  QAL  LLNLL    K++I+KEACWT+SNITAG++ Q
Sbjct:   299 TPALRTIGNIVTGDDNQTQIVLSVQALSHLLNLLQSP-KRAIRKEACWTISNITAGDKNQ 357

Query:   363 IQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 422
             IQ            VI+ANII  LV LL NAEF+I+KEAAWAISNATS GT +QI FLV 
Sbjct:   358 IQ-----------QVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVS 406

Query:   423 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI 482
             QGC+KPLCDLL   DPRI+ V LEG+ENIL  G+ E  +  T VN + ++I+DA+GL KI
Sbjct:   407 QGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKEAQV--TGVNPYKKIIEDADGLGKI 464

Query:   483 ESLQTHDNAEIYEKSVKLLETYWLD---DEDETMPPGDA 518
               LQ H N + +EK  +++ TY  D   DE + MP G +
Sbjct:   465 YDLQHHMNKDTFEKVSRIISTYLEDEQEDEGDLMPEGSS 503

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
 Identities = 304/517 (58%), Positives = 370/517 (71%)

Query:    10 DSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAN------ 61
             + RR ++K       +E RRRRE+  VEIRK KREE+L K+R  G    +P A+      
Sbjct:     8 EHRRTQFKAKNTFKPEELRRRREEQQVEIRKAKREENLAKRRGIGTGADRPGASLGAAPD 67

Query:    62 --DVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVP 119
               D  AP  ++  E+LP MV GV+S     Q + TT+FRKLLS ER+PPIEEVI++GVV 
Sbjct:    68 SDDDTAPTESQLNEDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVS 127

Query:   120 RFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQA 179
             RFVEFL R  +  +QFEAAWALTNIASG++  T+VVI+ GAVPIFV+LL SP  DVREQA
Sbjct:   128 RFVEFL-RSPHTLVQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQA 186

Query:   180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF 238
             VWALGNIAGDSP+CRD VLS G L PLL  L    KLSMLRNATWTLSNFCRGK PQP +
Sbjct:   187 VWALGNIAGDSPQCRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDW 246

Query:   239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
               ++PALP LA L++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RL E LMH S
Sbjct:   247 TTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHAS 306

Query:   299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              SV  PALR+VGNIVTGDD+QTQ +I   ALPCLL+LL  N K  I+KEACWT+SNITAG
Sbjct:   307 TSVQTPALRSVGNIVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAG 365

Query:   359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQ 416
             N  QIQ           +V++ANII PL+ LL N +   +KEA WAISNATSGG    +Q
Sbjct:   366 NSAQIQ-----------SVVDANIIPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQ 414

Query:   417 IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNL---GNTDVNVFTQMI 473
             I++LV QGCIKPLCDLL CPD +I+ V L+GLENILKVG+ +K     G   +N +   I
Sbjct:   415 IRYLVAQGCIKPLCDLLSCPDNKIIQVALDGLENILKVGDLDKQAAGEGQDSINRYALFI 474

Query:   474 DDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDED 510
             ++  G+EKI   QT+ N EIY K+  ++E Y+ DD++
Sbjct:   475 EECGGMEKIHECQTNANEEIYMKAFNIIEKYFSDDDE 511

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1415 (503.2 bits), Expect = 8.4e-145, P = 8.4e-145
 Identities = 309/527 (58%), Positives = 371/527 (70%)

Query:    10 DSRRNKYKVAVD--ADEGRRRREDNMVEIRKNKREESLQKKR----REG---LQNQQPLA 60
             + RR +YK       DE RRRRE+  VEIRK KREE+L K+R    R+G   +      A
Sbjct:     8 EHRRTQYKARNQFRPDELRRRREEQQVEIRKQKREENLAKRRGIQTRDGGIGVGGGMAAA 67

Query:    61 -NDVNAPGTAKKLE-NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV 118
              +D  A     +L   LP MV GV+S+    Q + TT+FRKLLS ER+PPIE VI +GVV
Sbjct:    68 ESDDEASAIESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVV 127

Query:   119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              RFVEFL R  +  +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV+LL SP  DVREQ
Sbjct:   128 SRFVEFL-RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQ 186

Query:   179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP 237
             AVWALGNIAGDSP+CRD VL+ G L PLL  +N   K+SMLRNATWTLSNFCRGK PQP 
Sbjct:   187 AVWALGNIAGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPD 246

Query:   238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
             ++ ++PALP LA LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RL E LMH 
Sbjct:   247 WNTIAPALPVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHA 306

Query:   298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
             S SV  PALR+VGNIVTGDD+QTQ +I   ALP LL+LLS   K  I+KEACWT+SNITA
Sbjct:   307 STSVQTPALRSVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITA 365

Query:   358 GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--E 415
             GN  QIQ           +VI+A II PLV LL N +F  +KEA WAISNATSGG    +
Sbjct:   366 GNSSQIQ-----------SVIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPD 414

Query:   416 QIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTD--VNVFTQMI 473
             QI++LV QGCIKPLCDLL CPD +I+ V L+GLENILKVGE +K  G  D  VN +   I
Sbjct:   415 QIRYLVTQGCIKPLCDLLACPDNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFI 474

Query:   474 DDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQ 520
             ++A G+EKI   Q + N EIY K+  ++E Y+  DEDE    GD  +
Sbjct:   475 EEAGGMEKIHDCQNNANEEIYMKAYNIIEKYF-SDEDEAA--GDIDE 518

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5523	0.9094	0.9179	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4307	0.9408	0.9902	yes	no
O14063	IMA1_SCHPO	No assigned EC number	0.4990	0.9482	0.9464	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5503	0.9094	0.9179	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5172	0.9519	0.9501	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.7706	0.9759	0.9924	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5762	0.9260	0.9709	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7583	0.9722	0.9981	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5503	0.9094	0.9179	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5503	0.9094	0.9179	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7669	0.9556	0.9828	no	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7714	0.9722	0.9850	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1330085 hypothetical protein (529 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	541
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-36
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-31
pfam01749	97	pfam01749, IBB, Importin beta binding domain	4e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-18
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-11
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-11
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	1e-09
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	5e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-08
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	7e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-05
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	4e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	4e-04
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.001
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.003
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.003

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  579 bits (1493), Expect = 0.0
 Identities = 279/544 (51%), Positives = 351/544 (64%), Gaps = 23/544 (4%)

Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
            + R   +A     K K    ADE RRRRE+  VE+RK KREE L K+R   L +    A
Sbjct: 1   STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRR--NLADVSEEA 58

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
                P   +    LP +   ++S+D   Q +   +FRKLLS E SPPI+ VI +GVVPR
Sbjct: 59  ESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR 118

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FVEF+       LQFEAAWALTNIASGT++ TKVV+D GAVP+F++LL S  DDVREQAV
Sbjct: 119 FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAV 178

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK-PQPPF 238
           WALGNIAGDS  CRD VL  G L PLL  L      +SMLRNATWTLSN CRGK P P +
Sbjct: 179 WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
             +S ALP LA LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RL E L H S
Sbjct: 239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHES 298

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
             +  PALR+VGNIVTG D QTQ +I   AL    +LLS + K++I+KEACWT+SNITAG
Sbjct: 299 AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAG 357

Query: 359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQ 416
           N EQIQ           AVI+AN+I PL+ LL +AE+ IKKEA WAISNATSGG +  + 
Sbjct: 358 NTEQIQ-----------AVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDI 406

Query: 417 IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA 476
           I++LV QG IKPLCDLL   D +I+ V L+ +ENILKVGE ++     ++N++   ++ A
Sbjct: 407 IRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKA 466

Query: 477 EGLEKIESLQTHDNAEIYEKSVKLLETYWLD-DEDETMPPGDASQPGFGFGGNGNPPAPS 535
            G++ I  LQ   N  IY+K+  ++E ++ + D  + + P  A    F FG N       
Sbjct: 467 GGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN-TFTFGSN---VNQQ 522

Query: 536 GGFN 539
           G FN
Sbjct: 523 GNFN 526

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  130 bits (330), Expect = 3e-36
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           E VI++G +P  V  LL      +Q EAAWAL+N+++G +++ + V++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVS-LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           S  ++V + A+WAL N+A      + +VL  GG VP L  L       + +NAT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 230 CR 231
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  118 bits (297), Expect = 1e-31
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 1/116 (0%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           +  LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P L + L      V
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  AL  + N+  G +     V+E   +P L+NLL  +  + I+K A   +SN+ +
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score =  115 bits (291), Expect = 4e-31
 Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 4  RPNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND 62
             +K + RR  YK    DA+E RRRRE+  VE+RKNKREE L K+R  GL  +     +
Sbjct: 1  ESPNKPEYRRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPE 60

Query: 63 VNAPGTA---KKLENLPVMVAGVWSNDSGVQYECTTQ 96
              G++   +    LPVMV GV S+D   Q   T  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 93.1 bits (232), Expect = 1e-22
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 12/132 (9%)

Query: 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
           +AVI+AG  P L   L     +V   A   + N+  G++   Q V+E   LP L+ LL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK 398
              + + K A W + N+ AG  +               V+EA  +  LV LL+++  DI+
Sbjct: 61  E-DEEVVKAALWALRNLAAGPEDNKL-----------IVLEAGGVPKLVNLLDSSNEDIQ 108

Query: 399 KEAAWAISNATS 410
           K A  A+SN  S
Sbjct: 109 KNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 89.7 bits (223), Expect = 1e-21
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
           S+D  VQ E       L S   +  I+ V+ +G +P  V+ L  ED  ++   A WAL N
Sbjct: 18  SSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAALWALRN 75

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           +A+G  ++  +V++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 76  LAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.9 bits (221), Expect = 3e-21
 Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 12/130 (9%)

Query: 376 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 435
           AVI+A  +  LV+LL +++ ++++EAAWA+SN ++G  ++ I+ +V  G +  L  LL  
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKS 60

Query: 436 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 495
            D  +V   L  L N+    E  K            ++ +A G+ K+ +L    N +I +
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNK-----------LIVLEAGGVPKLVNLLDSSNEDIQK 109

Query: 496 KSVKLLETYW 505
            +   L    
Sbjct: 110 NATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 79.7 bits (197), Expect = 5e-18
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 13/129 (10%)

Query: 323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANI 382
           VI+   LP L++LLS +  +++++EA W +SN++AGN + IQ           AV+EA  
Sbjct: 3   VIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQ-----------AVVEAGG 50

Query: 383 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT 442
           +  LV LL++ + ++ K A WA+ N  +G   +    ++  G +  L +LL   +  I  
Sbjct: 51  LPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDSSNEDIQK 109

Query: 443 VCLEGLENI 451
                L N+
Sbjct: 110 NATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 57.8 bits (141), Expect = 3e-11
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
           + E+ + VI+ GAVP  V+LL SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.4 bits (140), Expect = 4e-11
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
             E+ + V+D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNI 186
            +++  AA AL  +A G  E  +  +    +P  + LL    D+VRE A WALG I
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 48.6 bits (117), Expect = 5e-08
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 105 RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
                + V+ +G +P  VE LL+ +  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVE-LLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.6 bits (117), Expect = 6e-08
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 106 SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS 146
               + VI +G VP  V+ LL     ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQ-LLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 374 IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410
             AVIEA  + PLV LL + + ++++EAAWA+SN  +
Sbjct: 5   KQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +   +E LL +  P+++  AA AL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 178 QAVWALGNIAGDS 190
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
           + +  QAVIEAG  P L + L  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
                Q VIE  A+P L+ LLS    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSD 272
           + A+P L  L+ S D+EV  +A WALS L+ 
Sbjct: 11  AGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 16/37 (43%), Positives = 26/37 (70%)

Query: 374 IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410
             AV++A  +  LV LL++ + ++ KEAAWA+SN +S
Sbjct: 5   KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.4 bits (101), Expect = 9e-06
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
            ++  QAV++AG  P L E L      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSD 272
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 413 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 451
             E  + +V  G +  L +LL   D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           DD   Q V++   LP L+ LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           VRE A  ALG +AG  P      + +  L+P L  L       +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 413 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 451
           + E  + ++  G + PL  LL  PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR 231
           SP  +  V+  G + PL+  L+  P   +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLS-SPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 61/299 (20%), Positives = 101/299 (33%), Gaps = 60/299 (20%)

Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
            +  LL ++   ++  AA AL  + S             AVP+  +LL      VR+ A 
Sbjct: 47  ELLKLLEDEDLLVRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVRDAAA 95

Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
            ALG +    P           + PL+  L       +   A   L      +       
Sbjct: 96  DALGEL--GDPEA---------VPPLVELLENDENEGVRAAAARAL-GKLGDE-----RA 138

Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV---FPRLAEFLMHP 297
           + P L AL      +    L  A   +   +       +A+ E G     P L E L   
Sbjct: 139 LDPLLEALQDEDSGSAAAALDAALLDVRAAA------AEALGELGDPEAIPLLIELLEDE 192

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G +  G +         +A   L+  LS +    ++K A   +  I  
Sbjct: 193 DADVRRAAASALGQL--GSEN-------VEAADLLVKALS-DESLEVRKAALLALGEI-- 240

Query: 358 GNREQIQVIMHV-----------HAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI 405
           G+ E +  +               A ++ A+  A    PL+ LL +    ++ EAA A+
Sbjct: 241 GDEEAVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALAL 299

Length = 335

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIA 187
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL 270
             A   L     G P+     V   LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 13/77 (16%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
           + E+     +P  +E LL++  P+++  AA AL  +            D  A+P  ++LL
Sbjct: 24  LGELGDPEALPALLE-LLKDPDPEVRRAAAEALGKLG-----------DPEALPALLELL 71

Query: 169 YSPSDD-VREQAVWALG 184
               D  VR  A  AL 
Sbjct: 72  QDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	541
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.82
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.78
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.77
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.76
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.75
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.74
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.7
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.68
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.68
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.68
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.66
PRK09687	280	putative lyase; Provisional	99.61
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.61
PRK09687	280	putative lyase; Provisional	99.59
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.59
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.57
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.57
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.55
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.52
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.52
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.51
PTZ00429	746	beta-adaptin; Provisional	99.48
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.46
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.46
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.45
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.43
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.42
PTZ00429	746	beta-adaptin; Provisional	99.42
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.41
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.34
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.31
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.25
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.19
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.19
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.15
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.11
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.08
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.07
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.03
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.02
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.0
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.0
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.97
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.94
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.92
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.92
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.91
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.87
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.82
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.8
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.79
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.76
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.74
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.72
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.72
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.72
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.71
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.66
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.66
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.64
COG5369	743	Uncharacterized conserved protein [Function unknow	98.6
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.6
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.58
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.56
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.55
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.54
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.5
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.5
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.49
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.49
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.48
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.43
PF05536	543	Neurochondrin: Neurochondrin	98.38
COG5369	743	Uncharacterized conserved protein [Function unknow	98.37
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.35
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.32
TIGR02270	410	conserved hypothetical protein. Members are found	98.31
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.29
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.27
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.25
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.24
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.24
TIGR02270	410	conserved hypothetical protein. Members are found	98.22
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.14
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.14
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.14
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.14
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.13
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.12
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.1
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.06
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.05
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.04
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.03
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.02
PF05536	543	Neurochondrin: Neurochondrin	98.0
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.0
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.96
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.95
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.95
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.94
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.92
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	97.91
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.91
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.9
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.87
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.87
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.87
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.86
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.84
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.78
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.72
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	97.71
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.69
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.61
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.61
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.59
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.59
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.58
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.57
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.52
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.5
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.49
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.46
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.43
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.4
KOG0567	289	consensus HEAT repeat-containing protein [General	97.33
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.32
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.31
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.31
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.29
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.25
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.25
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.25
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.23
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.2
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.2
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.19
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.19
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.18
PF05004	309	IFRD: Interferon-related developmental regulator (	97.18
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.14
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.11
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.89
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.88
KOG0567	289	consensus HEAT repeat-containing protein [General	96.85
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.83
PRK14707	2710	hypothetical protein; Provisional	96.79
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.78
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.71
PRK14707	2710	hypothetical protein; Provisional	96.7
KOG3036	293	consensus Protein involved in cell differentiation	96.7
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.7
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.69
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.59
KOG2025	892	consensus Chromosome condensation complex Condensi	96.55
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.52
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.51
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.5
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.47
KOG1243	690	consensus Protein kinase [General function predict	96.46
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.45
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.44
KOG2956	516	consensus CLIP-associating protein [General functi	96.44
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.41
PF05004	309	IFRD: Interferon-related developmental regulator (	96.41
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.39
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.33
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.31
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.31
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.31
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.27
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.26
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.25
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.24
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.22
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.2
KOG3036	293	consensus Protein involved in cell differentiation	96.07
KOG2956	516	consensus CLIP-associating protein [General functi	96.03
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.84
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.75
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.75
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.7
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.69
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.64
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.61
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.59
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.53
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.4
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.37
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.33
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.23
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.17
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.03
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.97
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.92
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.88
KOG1243	690	consensus Protein kinase [General function predict	94.74
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.72
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.63
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.62
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	94.61
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	94.58
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.5
KOG2025	892	consensus Chromosome condensation complex Condensi	94.49
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.42
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.42
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.4
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.34
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	94.24
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	94.23
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.14
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.03
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.65
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.63
KOG2005	878	consensus 26S proteasome regulatory complex, subun	93.61
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.42
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.31
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.29
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	93.18
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	93.05
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.86
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	92.75
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	92.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.42
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	92.4
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	92.35
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	92.35
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.17
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.01
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.9
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	91.85
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.74
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.5
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	91.5
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	91.5
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	91.32
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	91.31
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	91.27
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	91.24
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.16
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	90.97
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	89.96
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	89.95
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	89.78
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	89.7
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.26
KOG2032	533	consensus Uncharacterized conserved protein [Funct	88.91
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	88.84
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	88.84
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	88.01
KOG0413	1529	consensus Uncharacterized conserved protein relate	87.62
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	87.33
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	87.29
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	87.26
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	87.05
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	87.05
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.16
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	85.85
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.6
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	85.41
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.35
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	85.32
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	85.01
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	84.99
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	84.57
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.45
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	84.14
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	84.09
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	83.87
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	83.6
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	83.54
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	83.2
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.14
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	82.67
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	82.6
KOG2549	576	consensus Transcription initiation factor TFIID, s	82.2
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	81.44
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	81.14
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	80.89
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	80.58
KOG1988	970	consensus Uncharacterized conserved protein [Funct	80.07
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	80.06
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	80.06

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.1e-89  Score=615.28  Aligned_cols=508  Identities=53%  Similarity=0.834  Sum_probs=464.5

Q ss_pred             CCCchHhhhhcCC--CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhc
Q 009184            6 NSKADSRRNKYKV--AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVW   83 (541)
Q Consensus         6 ~~~~~~~~~~~k~--~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~   83 (541)
                      .+.++.|+.+||+  .+.++|+||||+++++++||+||+|.+.|||+.....+...++-  -+..++....+|.+.+.|.
T Consensus         4 rf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~--i~meqq~~~elp~lt~~l~   81 (526)
T COG5064           4 RFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSF--IPMEQQFYSELPQLTQQLF   81 (526)
T ss_pred             ccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhcc--CchhHHhhhhhHHHHHHHh
Confidence            3478899999998  48899999999999999999999999999999843222211110  1122233357899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHH
Q 009184           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  163 (541)
                      |+|.+.++.|+.-+|+++|.+..|+++.++++|++|.+++++.......++.+|+|+|+|+++++..++..++++|++|.
T Consensus        82 SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPl  161 (526)
T COG5064          82 SDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPL  161 (526)
T ss_pred             hhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHH
Confidence            99999999999999999999999999999999999999999955443788999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhhcCC-CCCChhhh
Q 009184          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGK-PQPPFDQV  241 (541)
Q Consensus       164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~  241 (541)
                      ++++|.+++.++++++.|+|||++++++.+|+.+++.|++++++.++..+ .+.++.+++.|+|+|||+++ |.+....+
T Consensus       162 fiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i  241 (526)
T COG5064         162 FIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI  241 (526)
T ss_pred             HHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH
Confidence            99999999999999999999999999999999999999999999999543 35789999999999999998 88889999


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  321 (541)
                      ...+|.|.+++.+.|+++..+|||+++++++++.+.++.+++.|..++|+.+|.+++..++.+|++.+||+++|++.+++
T Consensus       242 sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTq  321 (526)
T COG5064         242 SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQ  321 (526)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA  401 (541)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a  401 (541)
                      .++++|+++.+..+|.++ ...+|++|||+++|+++++.++++           ++++++++|+|+++|++.+..++++|
T Consensus       322 viI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiq-----------avid~nliPpLi~lls~ae~k~kKEA  389 (526)
T COG5064         322 VIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQ-----------AVIDANLIPPLIHLLSSAEYKIKKEA  389 (526)
T ss_pred             hheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHH-----------HHHhcccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 889999999999999999999999           99999999999999999999999999


Q ss_pred             HHHHHHhccCC--CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchH
Q 009184          402 AWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGL  479 (541)
Q Consensus       402 ~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  479 (541)
                      |||+.|...++  .|+.+++|+++|+|++|+++|...|.++.+.+|+++.++++.|+..+.......|.|..++++.||+
T Consensus       390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggm  469 (526)
T COG5064         390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGM  469 (526)
T ss_pred             HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccH
Confidence            99999999876  5889999999999999999999999999999999999999999988877666788899999999999


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC--CCCCCCCCCCcccCCCC
Q 009184          480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDET--MPPGDASQPGFGFGGNG  529 (541)
Q Consensus       480 ~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  529 (541)
                      +.|..+|++.|.+||++|+.||++||++|+.-|  .|++.+.  .|+|+++.
T Consensus       470 d~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~--tftfg~~~  519 (526)
T COG5064         470 DAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN--TFTFGSNV  519 (526)
T ss_pred             HHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcCccccCC--eeecCCCc
Confidence            999999999999999999999999999886433  4554433  78887663

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-87  Score=646.87  Aligned_cols=508  Identities=65%  Similarity=1.013  Sum_probs=462.3

Q ss_pred             chHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCH
Q 009184            9 ADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDS   87 (541)
Q Consensus         9 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~   87 (541)
                      ...|+++||+ +++++|+||||++..+|+||+||++.+.|||+.......  ..  ............+.++..+.|+++
T Consensus         5 ~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~S~~~   80 (514)
T KOG0166|consen    5 SNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELML--DE--LLSDSQSQASNLELMLAALYSDDP   80 (514)
T ss_pred             hHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccc--cc--ccchhHHHhhhhHHHHHHHhCCCH
Confidence            3456677776 699999999999999999999999999999992211111  00  011112222347899999999999


Q ss_pred             HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh
Q 009184           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (541)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (541)
                      ..+..+...+|++++.+++|+++.++..|++|.||++|...+++.++.+|+|+|+||++++++.+..+++.|++|.|+++
T Consensus        81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L  160 (514)
T KOG0166|consen   81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL  160 (514)
T ss_pred             HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence            99999999999999999899999999999999999999877669999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHH
Q 009184          168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALP  246 (541)
Q Consensus       168 L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~  246 (541)
                      +.+++..++++|+|+|+|++++++.+|+.++..|++++|+.++.......+.++++|+|+|||++. |.+.+..+..++|
T Consensus       161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp  240 (514)
T KOG0166|consen  161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP  240 (514)
T ss_pred             hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            999999999999999999999999999999999999999999966655689999999999999999 8899999999999


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhc
Q 009184          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (541)
Q Consensus       247 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~  326 (541)
                      .|..++.+.|++|+.++||+++||+++.++.++.+++.|++++|+.+|.+.+..++.+|++++||+++|++.+++.++++
T Consensus       241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~  320 (514)
T KOG0166|consen  241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS  320 (514)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS  406 (541)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~  406 (541)
                      |+++.|..++...+...++++|||+++||++|+.++++           +++++|++|.|+.+|++++.++|++|+||++
T Consensus       321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq-----------aVida~l~p~Li~~l~~~ef~~rKEAawaIs  389 (514)
T KOG0166|consen  321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ-----------AVIDANLIPVLINLLQTAEFDIRKEAAWAIS  389 (514)
T ss_pred             ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH-----------HHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence            99999999999654777999999999999999999999           9999999999999999999999999999999


Q ss_pred             HhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh
Q 009184          407 NATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ  486 (541)
Q Consensus       407 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~  486 (541)
                      |++.+|+++++.+|++.|+|++|+++|...|.+++..+|++|.+|++.++......+   ++++.+|+++||+++|+.||
T Consensus       390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~~~IEe~ggldkiE~LQ  466 (514)
T KOG0166|consen  390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT---NPLAIMIEEAGGLDKIENLQ  466 (514)
T ss_pred             hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHccChhHHHHhh
Confidence            999999999999999999999999999999999999999999999999998765321   88999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009184          487 THDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF  540 (541)
Q Consensus       487 ~~~~~~i~~~a~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (541)
                      +|.|++||++|.+||++||++|++++..+.+  ..+|+|.++    .|.++|||
T Consensus       467 ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~~--~~~~~~~~~----~~~~~f~f  514 (514)
T KOG0166|consen  467 SHENEEIYKKAYKIIDTYFSEEDDEDDQQPT--TSQFTFQVQ----APDGGFNF  514 (514)
T ss_pred             ccccHHHHHHHHHHHHHhcCCCccccccccc--ccccccCCC----CCCCCCCC
Confidence            9999999999999999999988655533212  127777665    37899998

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-43  Score=338.86  Aligned_cols=367  Identities=26%  Similarity=0.404  Sum_probs=326.9

Q ss_pred             CCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        73 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      +.+|.++++|.. .++.++++|+|+|.++++++ ....+.+++.|++|.|+.++.+++ ..++++|+|+|+||+.+++.+
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChHH
Confidence            789999999985 55999999999999999986 777888999999999999999999 999999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      |+.+++.|+++.|+.++..++. .+..++.|+|+|+|++..+.-....-..+++.|..++ .+.|+++...++|++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999988665 7888999999999976622222222233788888888 8999999999999999999


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHH
Q 009184          231 RGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRT  308 (541)
Q Consensus       231 ~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~  308 (541)
                      .+. +........|++|.|+.+|.+.+..++..|+++++|++.+++.+.+.+++.|+++.|..++. ++...+++.|||+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            887 44555666999999999999999999999999999999999999999999999999999998 6677799999999


Q ss_pred             HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      |+||+.|+.++.+.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.           ++++.|++++++
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~-----------yLv~~giI~plc  413 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIK-----------YLVEQGIIKPLC  413 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHH-----------HHHHcCCchhhh
Confidence            9999999999999999999999999999999 89999999999999998 7899999           999999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhccCCC-------HHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          388 ALLENAEFDIKKEAAWAISNATSGGT-------HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       388 ~~l~~~~~~v~~~a~~aL~nl~~~~~-------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      .+|...|.++...++.+|.|+...+.       .....++-+.|+++.+-.+-.+++.++...+..++...+..
T Consensus       414 dlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~  487 (514)
T KOG0166|consen  414 DLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE  487 (514)
T ss_pred             hcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence            99998999999999999999986442       23344555789999998888888888988888877776643

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2e-42  Score=311.19  Aligned_cols=365  Identities=25%  Similarity=0.354  Sum_probs=318.8

Q ss_pred             cCCHHHHHHhhc-CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           72 LENLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        72 ~~~l~~l~~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      .+.+|++++++. ......+++|+|+|.+++|++ ..+.+.++++|.+|.++++|.+++ .+++++++|+|+|++.+++.
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGDS~~  190 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGDSEG  190 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCCchh
Confidence            368999999995 466678999999999999986 677777889999999999999998 89999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184          151 HTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~  227 (541)
                      +++.++++|++.+++.++.+.  +..+.+.+.|+|+|+|+.. |..-...+.. .++.|.+++ ...|+++...|+|+++
T Consensus       191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq-alpiL~KLi-ys~D~evlvDA~WAiS  268 (526)
T COG5064         191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ-ALPILAKLI-YSRDPEVLVDACWAIS  268 (526)
T ss_pred             HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH-HHHHHHHHH-hhcCHHHHHHHHHHHH
Confidence            999999999999999998774  4588899999999999654 3222233332 688888888 8889999999999999


Q ss_pred             hhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 009184          228 NFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (541)
Q Consensus       228 ~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al  306 (541)
                      .|+.+. .........|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|.++...+++.||
T Consensus       269 YlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaC  348 (526)
T COG5064         269 YLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEAC  348 (526)
T ss_pred             HhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhh
Confidence            999986 4444455688888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---ChHHHHHHHhhchhhHHHHHhcCcH
Q 009184          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIAVIEANII  383 (541)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~~~~~~l~~~~~l  383 (541)
                      |+++|+..|+.++.+.+++.+++|.|+++|.+. +..++++|||+++|.+++   .|++++           ++++.|++
T Consensus       349 WTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~ir-----------yLv~qG~I  416 (526)
T COG5064         349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIR-----------YLVSQGFI  416 (526)
T ss_pred             eeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHH-----------HHHHccch
Confidence            999999999999999999999999999999998 999999999999999983   678899           99999999


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhccCCC---------HHHHHHHH-HcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184          384 GPLVALLENAEFDIKKEAAWAISNATSGGT---------HEQIKFLV-IQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  452 (541)
Q Consensus       384 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~---------~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~  452 (541)
                      .+|+.+|...+.++-+-++.++-|+...|.         ......++ +.|+++.+-.+-++.+.++...+-.++..++
T Consensus       417 kpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fF  495 (526)
T COG5064         417 KPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFF  495 (526)
T ss_pred             hHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHc
Confidence            999999999888899999999999987663         22333334 4799999999888888887776666555544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=9.9e-40  Score=362.06  Aligned_cols=408  Identities=20%  Similarity=0.215  Sum_probs=344.9

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        72 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      .+.+|.+++.|.++++..+..|++++.+++... .++++.+++.|++|.|+++|.+++++.+|++|+|+|++|+.+++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            468999999999999999999999998887653 5578899999999999999987654799999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHHHH---HhcCChHHHHH
Q 009184          152 TKVVIDHGAVPIFVKLLYSPS---------DDVREQAVWALGNIAGDSPR-----------CRDLV---LSQGGLVPLLA  208 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~r~~i---~~~g~i~~Ll~  208 (541)
                      ++.+++.|++|.|++++.+++         ..++++|+|+|+|||++.+.           .|+..   ...|++.+++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999998654         45699999999999987544           22221   34567778877


Q ss_pred             hhcCCChhhHH----HHHHHHHHhhhcCC-CCCChh-------------------hhhchHHHHHHhhccCChhHHHHHH
Q 009184          209 QLNGQPKLSML----RNATWTLSNFCRGK-PQPPFD-------------------QVSPALPALAHLIHSNDDEVLTDAC  264 (541)
Q Consensus       209 ~l~~~~~~~~~----~~a~~~L~~l~~~~-~~~~~~-------------------~~~~~l~~L~~lL~~~d~~v~~~a~  264 (541)
                      .+ +..+...+    ..++|+|.+|+++. +.....                   ...++++.|+.++...+.+++.+++
T Consensus       347 l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av  425 (2102)
T PLN03200        347 VF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELI  425 (2102)
T ss_pred             hc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHH
Confidence            77 44443333    36789999999987 333121                   1135677889999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhH
Q 009184          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (541)
Q Consensus       265 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  344 (541)
                      |+|.+++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.++++++..++++|++|.|+++|.++ +..+
T Consensus       426 ~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~i  504 (2102)
T PLN03200        426 RALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKA  504 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence            999999999999999999999999999999999999999999999999999998888999999999999999998 9999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcC
Q 009184          345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG  424 (541)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  424 (541)
                      +++|+|+|+|++.++++...           .+.+.|+++.|+++|.+++++++..|+|+|.|++..++.+.        
T Consensus       505 qeeAawAL~NLa~~~~qir~-----------iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~--------  565 (2102)
T PLN03200        505 KEDSATVLWNLCCHSEDIRA-----------CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT--------  565 (2102)
T ss_pred             HHHHHHHHHHHhCCcHHHHH-----------HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH--------
Confidence            99999999999996444433           34478999999999999999999999999999998766553        


Q ss_pred             ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184          425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  504 (541)
Q Consensus       425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~  504 (541)
                       ++.|+.+|.++++.+...++++|.+++...+....        ........||++.|.+|+.++++++++.|.++|..|
T Consensus       566 -I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~--------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL  636 (2102)
T PLN03200        566 -ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL--------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADI  636 (2102)
T ss_pred             -HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH--------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence             47788889999999999999999999886554321        122234579999999999999999999999999999


Q ss_pred             CCCCCC
Q 009184          505 WLDDED  510 (541)
Q Consensus       505 ~~~~~~  510 (541)
                      |....+
T Consensus       637 ~a~~~d  642 (2102)
T PLN03200        637 FSSRQD  642 (2102)
T ss_pred             hcCChH
Confidence            986554

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=8.7e-38  Score=346.70  Aligned_cols=416  Identities=18%  Similarity=0.190  Sum_probs=367.8

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.++.++.+|.+.+.+.|..++++|+.++.++ ...++.+.+.|++|.|+++|.+++ +.+|..|+|+|.+++.++++++
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            56788999999999999999999999998664 677888999999999999999988 9999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+...|++++|+.+| ++.+...+..++|+|.+++..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998888888888899999999999 667889999999999999754


Q ss_pred             CCCCC--------------------------------------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          233 KPQPP--------------------------------------FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       233 ~~~~~--------------------------------------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      .....                                      .....++++.|+.++.++++.++..|+|+|.+++.+.
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            31110                                      0012578999999999999999999999999999999


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (541)
                      .+..+.++..|+++.++.+|.+.+..++..++++|++++.+.. .+...+++.|+++.|+++|.+. +..++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999997544 4455678999999999999998 9999999999999


Q ss_pred             HHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHH-H-HHHHHcCChHHHhh
Q 009184          354 NITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-I-KFLVIQGCIKPLCD  431 (541)
Q Consensus       354 nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~-~-~~l~~~~~i~~L~~  431 (541)
                      |++.... ...           .+...|+++.|+++|.+++++.|+.|+|+|.+++.....++ . .++...|.+.+|++
T Consensus       720 nLl~~~e-~~~-----------ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~  787 (2102)
T PLN03200        720 NLLSDPE-VAA-----------EALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVD  787 (2102)
T ss_pred             HHHcCch-HHH-----------HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHH
Confidence            9998644 455           67788999999999999999999999999999998776554 3 56667899999999


Q ss_pred             hcCCCChHHHHH--HHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009184          432 LLVCPDPRIVTV--CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD  508 (541)
Q Consensus       432 lL~~~~~~~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~  508 (541)
                      +|+..|.+....  ++++|..+.+......    ...++|..+++..++++.|.....|.+|.++++|..||+++..+.
T Consensus       788 ~L~~~~~~~~~~~~al~~l~~l~~~~~~~~----~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        788 LLNSTDLDSSATSEALEALALLARTKGGAN----FSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHhcCCcchhhHHHHHHHHHHHHhhcccCC----CCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            999988876665  8999999998654433    256889999999999999966669999999999999999998753

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-28  Score=222.08  Aligned_cols=365  Identities=19%  Similarity=0.244  Sum_probs=316.9

Q ss_pred             hhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184           69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (541)
Q Consensus        69 ~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~  148 (541)
                      ..++.++..++..+.++..++|..++.++.+++..  ......+...|.+.++..+-++.+ ..+|..+..+|.|++. +
T Consensus       122 iv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s  197 (550)
T KOG4224|consen  122 IVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-S  197 (550)
T ss_pred             EEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-h
Confidence            34567888888888888899999999999999865  555667778999999999777777 8999999999999998 6


Q ss_pred             hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHhhcCCChhhHHHHHHHHH
Q 009184          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLNGQPKLSMLRNATWTL  226 (541)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~i~~Ll~~l~~~~~~~~~~~a~~~L  226 (541)
                      .++++.++..|++|.|+.++++.+..++..|+.+++||+.+.. .|+.+.+.+  .++.|+.++ +++++.++-.|..+|
T Consensus       198 ~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lAL  275 (550)
T KOG4224|consen  198 RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLAL  275 (550)
T ss_pred             hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHH
Confidence            8999999999999999999999999999999999999998876 688888887  899999999 888999999999999


Q ss_pred             HhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-hhhHHHH
Q 009184          227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPA  305 (541)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~a  305 (541)
                      .+++............|.+|.++++|+++..........|+.+++-.+- +.-.+++.|++..|+.+|...+ .+++..|
T Consensus       276 rnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchA  354 (550)
T KOG4224|consen  276 RNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHA  354 (550)
T ss_pred             hhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhH
Confidence            9999887666666779999999999998887777777889999886544 3345788999999999998765 5699999


Q ss_pred             HHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHH
Q 009184          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGP  385 (541)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  385 (541)
                      ..+|.|++.........+.++|.++.+..++.+. .-.+|.+...+++.++... ....           ++.+.|++|.
T Consensus       355 vstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~-----------~lld~gi~~i  421 (550)
T KOG4224|consen  355 VSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKE-----------ALLDSGIIPI  421 (550)
T ss_pred             HHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHH-----------HHhhcCCcce
Confidence            9999999998888888899999999999999998 8889999999999988743 3345           8899999999


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHH------cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184          386 LVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI------QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       386 L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~------~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~  455 (541)
                      |+.++.+.+.+++-.|+.+|.|++.  +.++...+++      +|+-..|..++.+.+..+...+.+.+..|+...
T Consensus       422 LIp~t~s~s~Ev~gNaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  422 LIPWTGSESEEVRGNAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             eecccCccchhhcccHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999988  5566666554      255668888999988889999999998888654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-28  Score=223.17  Aligned_cols=363  Identities=20%  Similarity=0.221  Sum_probs=310.8

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +....+...+++.++.++..|...+.+++-.  ....-.+++.+++..|+.-+..+. -++|..++.|++|++.- ++.+
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk  160 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK  160 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence            5667888899999999999999999988754  333334455566666665555555 69999999999999985 7788


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..+...|++..+.++-++.+..++..+..+|.|+.... +.|..++..|+++.|+.++ +..+..++..++.+++++.-.
T Consensus       161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd  238 (550)
T KOG4224|consen  161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD  238 (550)
T ss_pred             hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence            88889999999999888899999999999999997544 4889999999999999999 899999999999999999977


Q ss_pred             CCCCChhhh--hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184          233 KPQPPFDQV--SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (541)
Q Consensus       233 ~~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  310 (541)
                      .........  ..++|.|+.++.++++.++..|..+|.+++..... ...++++|.+|.++++|+++........+.|+.
T Consensus       239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag~lP~lv~Llqs~~~plilasVaCIr  317 (550)
T KOG4224|consen  239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAGSLPLLVELLQSPMGPLILASVACIR  317 (550)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence            644443333  34999999999999999999999999999976554 455899999999999999999888999999999


Q ss_pred             HhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL  390 (541)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l  390 (541)
                      |++-..-.. -.+.+.|++.+|+.+|....+.+++..|..+|.|+++.+.....           .+.+.|.+|.++.++
T Consensus       318 nisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~-----------~i~esgAi~kl~eL~  385 (550)
T KOG4224|consen  318 NISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVS-----------VIRESGAIPKLIELL  385 (550)
T ss_pred             hcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhH-----------HHhhcCchHHHHHHH
Confidence            998755433 36779999999999999886677999999999999997777777           889999999999999


Q ss_pred             hcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184          391 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       391 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~  456 (541)
                      -++...++.+...++..++..  .....++.+.|+++.|+.++.+.+.+++-.+..+|.|+...-+
T Consensus       386 lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  386 LDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             hcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence            999999999999999999884  4667788999999999999999999999999999999986433

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=5.8e-24  Score=219.50  Aligned_cols=388  Identities=20%  Similarity=0.180  Sum_probs=314.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (541)
Q Consensus        77 ~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~  156 (541)
                      ++-..++. ...+...++..|.+++..  ......+.+.|+++.|+.+|++++ .++...++++|.+++. ..+++..+.
T Consensus       254 k~~~l~~k-QeqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~  328 (708)
T PF05804_consen  254 KLQTLIRK-QEQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMA  328 (708)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence            33344444 344555778889898753  455667889999999999999987 9999999999999998 578999999


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC
Q 009184          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP  236 (541)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~  236 (541)
                      +.|+++.|.+++.+++..++..++++|.|++.+.. .|..+++.|++|+|+.+|.   ++..+..++.+|++++......
T Consensus       329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r  404 (708)
T PF05804_consen  329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEAR  404 (708)
T ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhH
Confidence            99999999999999999999999999999997776 7999999999999999993   2346677899999999987666


Q ss_pred             ChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 009184          237 PFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (541)
Q Consensus       237 ~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  315 (541)
                      ......+++|.+++++.+ +++.+...+++.+.|++... .+.+.+++.++++.|+........   ...++.+.|++.+
T Consensus       405 ~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h  480 (708)
T PF05804_consen  405 SMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQH  480 (708)
T ss_pred             HHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhc
Confidence            666667899999997654 56777788888999998655 456788888899999987644332   2245788999887


Q ss_pred             CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--
Q 009184          316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--  393 (541)
Q Consensus       316 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--  393 (541)
                      +......+.  +.+..|+..+..+.+++...++..+|+|+...+.+..+           .+-+.+++|.|...|..+  
T Consensus       481 ~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~-----------ll~~~~llp~L~~~L~~g~~  547 (708)
T PF05804_consen  481 DGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQ-----------LLQEYNLLPWLKDLLKPGAS  547 (708)
T ss_pred             CchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHH-----------HHHhCCHHHHHHHHhCCCCC
Confidence            754333332  47778888888776889999999999999976555444           455789999999999765  


Q ss_pred             chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC--CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhh
Q 009184          394 EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQ  471 (541)
Q Consensus       394 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~  471 (541)
                      ++++..+++..++.++.  ++.....+.+.|+++.|+++|+.  +|.+++.+++.++..++...+.           ...
T Consensus       548 ~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-----------r~~  614 (708)
T PF05804_consen  548 EDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-----------REV  614 (708)
T ss_pred             ChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-----------HHH
Confidence            56899999999999887  67888888899999999999976  5688999999999999988654           245


Q ss_pred             HhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009184          472 MIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  503 (541)
Q Consensus       472 ~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~  503 (541)
                      ++.+.+....+.+|.++.|++|+..|...++-
T Consensus       615 ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi  646 (708)
T PF05804_consen  615 LLKETEIPAYLIDLMHDKNAEIRKVCDNALDI  646 (708)
T ss_pred             HHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            66779999999999999999999877655543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=1.9e-22  Score=208.43  Aligned_cols=361  Identities=19%  Similarity=0.213  Sum_probs=299.8

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.++.+++.|.+++.++...++..|.++...  ..+...+.+.|+++.|++++.+++ .+++..++++|.|++. +++.+
T Consensus       290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R  365 (708)
T PF05804_consen  290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR  365 (708)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence            6899999999999999999999999999654  567888999999999999999988 8999999999999999 58899


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..+++.|++|.|+.+|.++  ..+..|+.+|.+++.+.. .|..+...++++.+++++...+++.+...+++++.|++.+
T Consensus       366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            9999999999999999765  456779999999998765 7888888899999999987777788888899999999998


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhH
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGN  311 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~n  311 (541)
                      ..+.......++++.|+.........+   .+..+.|++.++......+.  +++..|+.++.. ++++....++.+|+|
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN  517 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN  517 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence            766655555678898887754433222   33578888877744333333  577788888765 467899999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL  390 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l  390 (541)
                      +...+......+.+.+++|.|..+|..+. .+++.-+++..++.++. ++....           .+.+.|+++.|+.+|
T Consensus       518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~-----------lL~~sgli~~Li~LL  585 (708)
T PF05804_consen  518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAP-----------LLAKSGLIPTLIELL  585 (708)
T ss_pred             cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHH-----------HHHhCChHHHHHHHH
Confidence            99876666666667899999999997652 55789999999999986 455555           777999999999999


Q ss_pred             hc--CchhHHHHHHHHHHHhccCCCHHHHHHHH-HcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhh
Q 009184          391 EN--AEFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK  459 (541)
Q Consensus       391 ~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~  459 (541)
                      ..  +|.++....++++..++...  +.+..++ +.+++..|++++.+.++.++..+-.+|..+..+.+...
T Consensus       586 ~~kqeDdE~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~  655 (708)
T PF05804_consen  586 NAKQEDDEIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA  655 (708)
T ss_pred             HhhCchHHHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            87  47899999999999999853  4555665 47899999999999999999999999999988877654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.8e-20  Score=186.50  Aligned_cols=400  Identities=20%  Similarity=0.268  Sum_probs=316.2

Q ss_pred             CHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        74 ~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      .+.++++.|+.. |+..|.+|+..++.+++..+.+....+--..++|.|+.+|+...+.+++..|+++|++++.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            568889999875 9999999999999999987555555444456899999999999889999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      ..+++.++||.|+.-|. -+..++.++++.+|-.|++..+.   .+++.|++...+..| +.-+..+++.|+.+..|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999997554 48899999999999999988773   678999999999998 77788999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCC----ChhhHHH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIP  304 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~~~----~~~v~~~  304 (541)
                      .-+...+..+...+|.|..+|++.|.+..+.+|.++.++++.   .++..+.+...|++....+++.-.    +..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            988888889999999999999999999999999999999854   556778889999999999998654    2346677


Q ss_pred             HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCc--------h--hHHHHHHHHHHHHhc---CChHH---------
Q 009184          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--------K--SIKKEACWTVSNITA---GNREQ---------  362 (541)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--------~--~v~~~a~~~L~nl~~---~~~~~---------  362 (541)
                      .++.+..++++++-....+...++...|..+|.....        .  ..-.+.+-.++-++.   ..+..         
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            8899999999988777778888888888888865310        0  000111111111111   00000         


Q ss_pred             ----------------------------------------------HHHH--Hhhchh-----hHHHHHhcCcHHHHHHH
Q 009184          363 ----------------------------------------------IQVI--MHVHAF-----SIIAVIEANIIGPLVAL  389 (541)
Q Consensus       363 ----------------------------------------------~~~~--~~~~~~-----~~~~l~~~~~l~~L~~~  389 (541)
                                                                    ..++  -+.+.+     +...-+-..++|.|+++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveV  563 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEV  563 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence                                                          0000  000000     00111112578999999


Q ss_pred             hhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcc
Q 009184          390 LENA-EFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVN  467 (541)
Q Consensus       390 l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  467 (541)
                      +.+. ++.||..++.||..++...+.+.+..++. ..+-..+..+|.++|..++.-+|.....|++..+..         
T Consensus       564 YsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~---------  634 (1051)
T KOG0168|consen  564 YSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT---------  634 (1051)
T ss_pred             HhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH---------
Confidence            8774 89999999999999999999998888875 566778899999999999999999999999876553         


Q ss_pred             hhhhHhhhcchHHHHHHHhc
Q 009184          468 VFTQMIDDAEGLEKIESLQT  487 (541)
Q Consensus       468 ~~~~~i~~~~~~~~l~~L~~  487 (541)
                       |...|.+.|.+..+.+|..
T Consensus       635 -F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  635 -FSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             -hhhhHhhhhHHHHHHHHhc
Confidence             6778888999999999976

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.82  E-value=7.3e-18  Score=170.32  Aligned_cols=370  Identities=20%  Similarity=0.223  Sum_probs=284.3

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--CR  194 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~r  194 (541)
                      -+|..+.+|.+.+ +.+|..|+.-+..++.++.+.+..+.+.|+|+.|+.+|.+.+.+++.+|+|+|.|+......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            3788899999988 99999999999999999999999999999999999999999999999999999999965544  56


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC--------------ChhHH
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--------------DDEVL  260 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--------------d~~v~  260 (541)
                      -.+.+.++++.++++|....|.++++.++.+|+||+..+ ......+...++.|...+-.+              +.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            667788999999999987889999999999999999984 334445566666665543211              35688


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhC------CCChhhHHHHHHHHhHhhcCCc-----hh---------
Q 009184          261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLM------HPSPSVLIPALRTVGNIVTGDD-----MQ---------  319 (541)
Q Consensus       261 ~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~-----~~---------  319 (541)
                      .++..||.|++....+..+.+.+. |++..|+..++      ..+....+.|+.++.|+..--.     ..         
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            899999999998666666666554 89999988875      2456677888888888864221     00         


Q ss_pred             -----------------HHH----------------------HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184          320 -----------------TQC----------------------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (541)
Q Consensus       320 -----------------~~~----------------------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (541)
                                       ...                      +....++...+.+|....++.+.+.++.+|-|++++..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                             000                      11222344445555544477888999999999998533


Q ss_pred             HHHHHHHhhchhhHHHH-HhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC--
Q 009184          361 EQIQVIMHVHAFSIIAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--  437 (541)
Q Consensus       361 ~~~~~~~~~~~~~~~~l-~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~--  437 (541)
                      .-..++      .. .+ .+..+++.|++++..++..|...++.+|.|++.+.   ..+.++..++++.|++.|....  
T Consensus       552 ~~~~~~------~~-~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~---rnk~ligk~a~~~lv~~Lp~~~~~  621 (717)
T KOG1048|consen  552 TWSEYM------RG-AVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI---RNKELIGKYAIPDLVRCLPGSGPS  621 (717)
T ss_pred             cchhHH------Hh-hhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc---hhhhhhhcchHHHHHHhCcCCCCC
Confidence            221100      00 33 47789999999999999999999999999999853   3345566899999999996533  


Q ss_pred             ----hHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCC
Q 009184          438 ----PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDE  509 (541)
Q Consensus       438 ----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~i~~~a~~il~~~~~~~~  509 (541)
                          .+++..++..|.+++......           ..-+.+.+|+++|..+. ...+++..+.|..++..+|...+
T Consensus       622 ~~~sedtv~~vc~tl~niv~~~~~n-----------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  622 TSLSEDTVRAVCHTLNNIVRKNVLN-----------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             cCchHHHHHHHHHhHHHHHHHhHHH-----------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence                578889999999999765442           44556699999999985 45777899999999999887543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.78  E-value=3.6e-15  Score=153.21  Aligned_cols=399  Identities=19%  Similarity=0.198  Sum_probs=298.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i  155 (541)
                      +.++..|.+.+.+....++..|.+++...  .+...  ..+..+.|...|.+++ +.++..+++.|.+++..+......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            34778888888888888999999998753  22222  4567889999999998 9999999999999999877778888


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC-
Q 009184          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-  234 (541)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-  234 (541)
                      .+.++++.++..+.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++...+ 
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            88999999999999999999999999999999877644 5566777788888888 55577888889999999987763 


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC--h---hhHHH-HHHH
Q 009184          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS--P---SVLIP-ALRT  308 (541)
Q Consensus       235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~--~---~v~~~-al~~  308 (541)
                      ........|+++.++..+.++|.-++.+++..+..++. .+...+.+.+.|+++.|..++.+.+  +   .+..+ .+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            33344447899999999999889999999999999998 5556788999999999999996532  2   22333 3477


Q ss_pred             HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHH-Hhc-C----c
Q 009184          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAV-IEA-N----I  382 (541)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l-~~~-~----~  382 (541)
                      .|+++...+....... ..++..+..++.+. ++..+..|..+++.+++. .+...           .+ .+. +    +
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~-----------~L~~~~~~~~~~~  338 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQ-----------LLLQKQGPAMKHV  338 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHH-----------HHHhhcchHHHHH
Confidence            8888875443321111 34666777888888 999999999999999864 55554           44 222 2    3


Q ss_pred             HHHHHHHhhcCchhHHHHHHHHHHHhccCCCH---HHH----HHHH---HcCChH-HHhhhcCCCChHHHHHHHHHHHHH
Q 009184          383 IGPLVALLENAEFDIKKEAAWAISNATSGGTH---EQI----KFLV---IQGCIK-PLCDLLVCPDPRIVTVCLEGLENI  451 (541)
Q Consensus       383 l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~---~~~----~~l~---~~~~i~-~L~~lL~~~~~~~~~~~l~~L~~l  451 (541)
                      +..+.....++..++|..++.++.++...+..   +.+    +...   ..+... .+.++++.+=++++..++..|..+
T Consensus       339 l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l  418 (503)
T PF10508_consen  339 LKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQAL  418 (503)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            44444555566789999999999999655432   111    1111   224455 788888888899999999999999


Q ss_pred             HHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184          452 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~  507 (541)
                      +...-.           ...+....|+++.+-+=....+.+..+.-..++.+....
T Consensus       419 ~~~~Wg-----------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~  463 (503)
T PF10508_consen  419 AAQPWG-----------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS  463 (503)
T ss_pred             hcCHHH-----------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            875322           233444556666555445667888888888888887643

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.77  E-value=4.8e-15  Score=152.28  Aligned_cols=402  Identities=19%  Similarity=0.175  Sum_probs=293.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i  155 (541)
                      ..+++.|...  .....++..+...+..  .+..+    .-..+.+...|++.+ .+....++.+|..+.... ..... 
T Consensus         6 ~~~l~~l~~~--~~~~~~L~~l~~~~~~--~~~l~----~~~~~~lf~~L~~~~-~e~v~~~~~iL~~~l~~~-~~~~l-   74 (503)
T PF10508_consen    6 NELLEELSSK--AERLEALPELKTELSS--SPFLE----RLPEPVLFDCLNTSN-REQVELICDILKRLLSAL-SPDSL-   74 (503)
T ss_pred             HHHHHHHhcc--cchHHHHHHHHHHHhh--hhHHH----hchHHHHHHHHhhcC-hHHHHHHHHHHHHHHhcc-CHHHH-
Confidence            3445555443  3345555555554432  12122    222334788888776 777788888999888732 22222 


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC
Q 009184          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ  235 (541)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~  235 (541)
                       ..+..+.|...|.++++.++..+++.|++++.++......+.+.+.++.++..+ .+++..+...|+.+|..++...+.
T Consensus        75 -~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~  152 (503)
T PF10508_consen   75 -LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEG  152 (503)
T ss_pred             -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchh
Confidence             346678999999999999999999999999988887778888899999999999 889999999999999999987654


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 009184          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (541)
Q Consensus       236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  315 (541)
                      .......+.++.|..++...+..++..++.++.+++..+++....+.+.|+++.++..+.++|.-++..++.++..++. 
T Consensus       153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-  231 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-  231 (503)
T ss_pred             HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-
Confidence            4444446668889999988888899999999999999999999999999999999999999999999999999999999 


Q ss_pred             CchhHHHHHhcCchHHHHHhhcCCC-ch---h-HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184          316 DDMQTQCVIEYQALPCLLNLLSGNY-KK---S-IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL  390 (541)
Q Consensus       316 ~~~~~~~~~~~~~l~~L~~lL~~~~-~~---~-v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l  390 (541)
                      .+...+.+.+.|+++.|..++.+.. ++   . .-.......++++...+..+.           ... ..++..+.+++
T Consensus       232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~-----------~~~-p~~~~~l~~~~  299 (503)
T PF10508_consen  232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVL-----------ELY-PAFLERLFSML  299 (503)
T ss_pred             ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHH-----------HHH-HHHHHHHHHHh
Confidence            6666778899999999999997653 22   1 122333566777764444332           111 24566677777


Q ss_pred             hcCchhHHHHHHHHHHHhccCCCHHHHHHH-HHc-----CChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCC
Q 009184          391 ENAEFDIKKEAAWAISNATSGGTHEQIKFL-VIQ-----GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNT  464 (541)
Q Consensus       391 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l-~~~-----~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~  464 (541)
                      .+.|+..+..|..+++.+..  +.+....| ...     .++..+.........+++..++.++.+++..++.....  +
T Consensus       300 ~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~--~  375 (503)
T PF10508_consen  300 ESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN--D  375 (503)
T ss_pred             CCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH--H
Confidence            88899999999999999986  55666666 333     24666666777788899999999999998765431100  0


Q ss_pred             CcchhhhHhhhcc--hHH-HHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184          465 DVNVFTQMIDDAE--GLE-KIESLQTHDNAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       465 ~~~~~~~~i~~~~--~~~-~l~~L~~~~~~~i~~~a~~il~~~~~~  507 (541)
                      -.+.....++..+  ... .+..+...|-+|++-.+..++...+..
T Consensus       376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            0011122222222  222 566677888899999999999887654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.76  E-value=3.2e-16  Score=158.58  Aligned_cols=361  Identities=20%  Similarity=0.234  Sum_probs=274.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh--H
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--H  151 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~--~  151 (541)
                      .+|+.+..|.+.++.+|-.|+..+..+.-+ ++.....+.+.|.|+.||.+|.+.. .+++..|+++|.|+..++..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfg-d~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFG-DNKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhh-hHHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence            679999999999999999999999888654 3555667778999999999999998 99999999999999998765  7


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-------------Chhh
Q 009184          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------------PKLS  217 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-------------~~~~  217 (541)
                      +-.+.+.++|+.++++|.. .|.++++.+..+|+||++.+. ++..++.. .+..|...+...             .+.+
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~  389 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST  389 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence            8888899999999999987 889999999999999998744 66666554 566666554211             1367


Q ss_pred             HHHHHHHHHHhhhcCC-CCC-ChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCh-----HHHHH----
Q 009184          218 MLRNATWTLSNFCRGK-PQP-PFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTN-----DKIQA----  280 (541)
Q Consensus       218 ~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~l~~~~~-----~~~~~----  280 (541)
                      +..+++.+|.|++... ... ..-...|++..|+..++      ..|..-.++|...+.|++..-.     ...+.    
T Consensus       390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~  469 (717)
T KOG1048|consen  390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI  469 (717)
T ss_pred             eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence            8899999999999854 222 23334788888888776      2356677888888888875321     00000    


Q ss_pred             --------------------------------------------HHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 009184          281 --------------------------------------------VIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTG  315 (541)
Q Consensus       281 --------------------------------------------~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~  315 (541)
                                                                  +....++..-..+| .+.+..+.+.+..+|-|++.+
T Consensus       470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~  549 (717)
T KOG1048|consen  470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG  549 (717)
T ss_pred             cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence                                                        01111222223333 334567889999999999987


Q ss_pred             Cch----hHHHH-HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184          316 DDM----QTQCV-IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL  390 (541)
Q Consensus       316 ~~~----~~~~~-~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l  390 (541)
                      ...    ....+ ....+++.|+.+|..+ +..+...++.+|.|++.+-..  +           .++..++++.|++.|
T Consensus       550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rn--k-----------~ligk~a~~~lv~~L  615 (717)
T KOG1048|consen  550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRN--K-----------ELIGKYAIPDLVRCL  615 (717)
T ss_pred             CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchh--h-----------hhhhcchHHHHHHhC
Confidence            652    23334 5778999999999999 999999999999999985332  3           566679999999999


Q ss_pred             hcC------chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHH
Q 009184          391 ENA------EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILK  453 (541)
Q Consensus       391 ~~~------~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~  453 (541)
                      ...      +.++...++.+|.|++.. +....+.+.+.+.++.|+-+..+. +++....+...|..|=.
T Consensus       616 p~~~~~~~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~  684 (717)
T KOG1048|consen  616 PGSGPSTSLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ  684 (717)
T ss_pred             cCCCCCcCchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            764      368899999999999974 678888899999999999988774 45677666665555543

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.75  E-value=2e-16  Score=148.11  Aligned_cols=356  Identities=14%  Similarity=0.106  Sum_probs=259.8

Q ss_pred             CCCHHHHHHHHHHHHHHHccC--CCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCCh
Q 009184           84 SNDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i  161 (541)
                      ..+..+...+..++......+  ++.....-+.++++..|.+..++++ .++..++.++|+|+|.++.+.|..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            344556666666776665321  1111233456788899999999887 8999999999999999999999999999997


Q ss_pred             HHHHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCC
Q 009184          162 PIFVKLLYS-------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       162 ~~L~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      ..++.+|+.       .+.+....++..|.|..-++...+..+++.|++++|...+. ...+....+..+..+.|+.+-.
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            777777754       23577778889999999999999999999999999888773 3344444444444333333221


Q ss_pred             -C-CCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CC-------hhhH
Q 009184          234 -P-QPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-------PSVL  302 (541)
Q Consensus       234 -~-~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~-------~~v~  302 (541)
                       . ..++.....+.-.+++++.+ -.+++.+-+...+.+.++++.-. -.+.+.|++..++.++.. +.       ....
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence             0 11222234455556666653 35667777788888888766543 336778999999998855 21       1234


Q ss_pred             HHHHHHHhHhhcCCchhHHHHHhcC-chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcC
Q 009184          303 IPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEAN  381 (541)
Q Consensus       303 ~~al~~L~nl~~~~~~~~~~~~~~~-~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~  381 (541)
                      ..++....-+..|.+... .+...+ +++.+.+++.+. +....-.+..+++|+++.+...+            ++++.+
T Consensus       291 k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci------------~~v~~~  356 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICI------------QLVQKD  356 (604)
T ss_pred             HhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHH------------HHHHHH
Confidence            445555555666665543 455444 899999999999 88999999999999999755544            789999


Q ss_pred             cHHHHHHHhhc-----CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184          382 IIGPLVALLEN-----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       382 ~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~  456 (541)
                      ++..|++.+..     ++.+++..++.||.|+....  .....++..|+.+.+..+++...|.++...+..++.+....+
T Consensus       357 ~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  357 FLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             HHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence            99999999865     46889999999999998732  334566889999999999999999999999999988776554


Q ss_pred             h
Q 009184          457 A  457 (541)
Q Consensus       457 ~  457 (541)
                      +
T Consensus       435 ~  435 (604)
T KOG4500|consen  435 Y  435 (604)
T ss_pred             H
Confidence            3

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=8.9e-15  Score=153.35  Aligned_cols=360  Identities=17%  Similarity=0.149  Sum_probs=257.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh---hH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS---EH  151 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~---~~  151 (541)
                      ++-+....+|+++..|..|+..|..+...-++.....+  ..+.+.|.+.+++++.+ ++..|+++++.++...+   ..
T Consensus       120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~  196 (1075)
T KOG2171|consen  120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSE  196 (1075)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHH
Confidence            34444455689999999999999988765323222222  22577788888888845 99999999999987553   33


Q ss_pred             HHHHHhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHH
Q 009184          152 TKVVIDHGAVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTL  226 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L  226 (541)
                      .+.+.  ..+|.++..+.    ..+......++.+|..++...+++-...+.. ++...+.+.. +.-+..++..|+.+|
T Consensus       197 ~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  197 VDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHHHHHHHH
Confidence            33333  35676666554    4667777889999999998777654444433 4555555553 345789999999999


Q ss_pred             HhhhcCCCCCC---hhhhhchHHHHHHhhccC--C--------------hhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 009184          227 SNFCRGKPQPP---FDQVSPALPALAHLIHSN--D--------------DEVLTDACWALSYLSDGTNDKIQAVIEAGVF  287 (541)
Q Consensus       227 ~~l~~~~~~~~---~~~~~~~l~~L~~lL~~~--d--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l  287 (541)
                      ..+++..|...   ......+++.++.++...  |              ..--..|..++-.++.+=...   .+-.-++
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~  350 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLF  350 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHH
Confidence            99998853222   224466777777776421  1              012334555565555332211   1112356


Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM  367 (541)
Q Consensus       288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  367 (541)
                      +.+..++.+++|.-|..++.+|+.++.|+.......+ ..+++.+++.|.++ ++.||..||.+++.++.+-...++   
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iq---  425 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQ---  425 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHH---
Confidence            7777888999999999999999999999987776654 37899999999999 999999999999999998777777   


Q ss_pred             hhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChH-HHhhhcCCCChHHHHHHH
Q 009184          368 HVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK-PLCDLLVCPDPRIVTVCL  445 (541)
Q Consensus       368 ~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~-~L~~lL~~~~~~~~~~~l  445 (541)
                              .-...-+++.|+..+.+. +++|+.+|+.++.|++..+..+.+....+ +++. .|..++.++.+.+++.++
T Consensus       426 --------k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vv  496 (1075)
T KOG2171|consen  426 --------KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAV  496 (1075)
T ss_pred             --------HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHH
Confidence                    667778888999999885 68999999999999998776665554333 3455 555566778889999999


Q ss_pred             HHHHHHHHhhHh
Q 009184          446 EGLENILKVGEA  457 (541)
Q Consensus       446 ~~L~~l~~~~~~  457 (541)
                      .+|..+....+.
T Consensus       497 taIasvA~AA~~  508 (1075)
T KOG2171|consen  497 TAIASVADAAQE  508 (1075)
T ss_pred             HHHHHHHHHHhh
Confidence            999998876554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.72  E-value=2.7e-15  Score=158.10  Aligned_cols=366  Identities=20%  Similarity=0.187  Sum_probs=276.9

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC--cHHHHHHHHHHHHHHhcCChh
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~--~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      +....++.++...|+   ..-.+.|..+.+.  ....-.+...|.+|.|+++|.-++  +.+.+..|-.+|.||....++
T Consensus       197 ets~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD  271 (2195)
T KOG2122|consen  197 ETSNSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPD  271 (2195)
T ss_pred             hhhhHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcc
Confidence            344566667666665   4455556656443  444567778999999999997654  367888999999999987776


Q ss_pred             HHHHHHhCCChHHHHH----------hhCC-----CCHHH---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-
Q 009184          151 HTKVVIDHGAVPIFVK----------LLYS-----PSDDV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-  211 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~----------lL~~-----~~~~v---~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-  211 (541)
                      ....-.+..+++.|-+          ++..     ....+   ...|+.+|..++.+ .++|..+-+.|++..|-.++. 
T Consensus       272 ~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~v  350 (2195)
T KOG2122|consen  272 EKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQV  350 (2195)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHH
Confidence            6544333333333322          1211     11112   22556666666544 458999999999999988772 


Q ss_pred             ----------CCChhhHHHHHHHHHHhhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHH
Q 009184          212 ----------GQPKLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ  279 (541)
Q Consensus       212 ----------~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~  279 (541)
                                ......+++++..+|.||+.++..  .......|++.+++..|.+..+++..-....|.||+-..+.+..
T Consensus       351 Dh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmK  430 (2195)
T KOG2122|consen  351 DHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMK  430 (2195)
T ss_pred             HHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHH
Confidence                      122457899999999999999832  33445689999999999998889988899999999977665555


Q ss_pred             HH-HHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCCchhHHHHH-hcCchHHHHHhhcCCC---chhHHHHHHHHHH
Q 009184          280 AV-IEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNY---KKSIKKEACWTVS  353 (541)
Q Consensus       280 ~~-~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~  353 (541)
                      .+ -+.|-+..|+.. |...+....+..+.+|+||+.++.++...+- -.|.+.+|+.+|....   ...+...|-.+|.
T Consensus       431 kvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILR  510 (2195)
T KOG2122|consen  431 KVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILR  510 (2195)
T ss_pred             HHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHH
Confidence            55 445878777766 4556677889999999999988776654443 4699999999998652   3467788888888


Q ss_pred             HHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHh
Q 009184          354 NITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC  430 (541)
Q Consensus       354 nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~  430 (541)
                      |+..   ...+..+           .+.+++.+..|++.|++....+..++|.+|.||... +++..++|++.|.+..|.
T Consensus       511 NVSS~IAt~E~yRQ-----------ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLr  578 (2195)
T KOG2122|consen  511 NVSSLIATCEDYRQ-----------ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLR  578 (2195)
T ss_pred             HHHhHhhccchHHH-----------HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHH
Confidence            8876   4666677           778999999999999999999999999999999986 678889999999999999


Q ss_pred             hhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184          431 DLLVCPDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       431 ~lL~~~~~~~~~~~l~~L~~l~~~~~  456 (541)
                      .++.+.+..+..-...+|.|++..-+
T Consensus       579 nLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  579 NLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             HHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            99999999999999999999997653

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=3.2e-14  Score=135.18  Aligned_cols=377  Identities=18%  Similarity=0.116  Sum_probs=279.4

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHH
Q 009184           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPI  163 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  163 (541)
                      ...+.+...|+..|.+++..  ...-..+...+++..||+.|..++ .++.......|..++- ..+++..+.+.|++..
T Consensus       274 ~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveK  349 (791)
T KOG1222|consen  274 RKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEK  349 (791)
T ss_pred             HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHH
Confidence            34455666778888888743  444556778899999999999988 8999999999999887 5778888889999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhc
Q 009184          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP  243 (541)
Q Consensus       164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  243 (541)
                      |++++...+++++...+..+.|++-++. .|...+..|.+|.+..++..++.   ..-|+..+..++.+...........
T Consensus       350 L~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTd  425 (791)
T KOG1222|consen  350 LLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTD  425 (791)
T ss_pred             HHHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHH
Confidence            9999999999999999999999998876 77788899999999999954433   3346667777777665555556688


Q ss_pred             hHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184          244 ALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (541)
Q Consensus       244 ~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~  321 (541)
                      +++.+.+.+-+ .+.+|-...+....|++-+ ..+.+.+++...+..|+..- +..++    .....+.|++.+......
T Consensus       426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn  500 (791)
T KOG1222|consen  426 CIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQN  500 (791)
T ss_pred             HHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHH
Confidence            99998887654 4555544444444456533 23456677777777777654 44443    234566777776554444


Q ss_pred             HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--chhHHH
Q 009184          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--EFDIKK  399 (541)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~  399 (541)
                      .+++  .+.-|...++...+.....++..+++|+...+-+.-+           .+-+.+++|.+-..|..+  ..+++.
T Consensus       501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~-----------ilq~~~LvPw~k~~L~pga~eddLvL  567 (791)
T KOG1222|consen  501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAK-----------ILQSENLVPWMKTQLQPGADEDDLVL  567 (791)
T ss_pred             HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHH-----------HHhhccccHHHHHhhcCCccchhhhh
Confidence            4544  4566777777665677888999999999886666555           556778999999988764  467788


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC--CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcc
Q 009184          400 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE  477 (541)
Q Consensus       400 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  477 (541)
                      ..+.+++.++.  +......+...++++.|+++|+.  .|.+++.+++..+..++...-.           ..-++.+..
T Consensus       568 ~~vi~~GT~a~--d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-----------r~~miket~  634 (791)
T KOG1222|consen  568 QIVIACGTMAR--DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-----------RRLMIKETA  634 (791)
T ss_pred             HHHHHhhhhhh--hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-----------HHHHHhhcc
Confidence            88888888776  44555666688999999999986  5677888888888888876322           244677777


Q ss_pred             hHHHHHHHhcCCCHHHHHHHHH
Q 009184          478 GLEKIESLQTHDNAEIYEKSVK  499 (541)
Q Consensus       478 ~~~~l~~L~~~~~~~i~~~a~~  499 (541)
                      .-..+.+|.+..|.+|++.+..
T Consensus       635 ~~AylIDLMHDkN~eiRkVCDn  656 (791)
T KOG1222|consen  635 LGAYLIDLMHDKNAEIRKVCDN  656 (791)
T ss_pred             chHHHHHHHhcccHHHHHHHHH
Confidence            7788999999999998876543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=4.6e-14  Score=128.47  Aligned_cols=309  Identities=13%  Similarity=0.139  Sum_probs=245.8

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC-CcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (541)
                      +++...-.+++.+|..+...  .|   .+.+......++.+|... ++.++....+.++..-+.....+++.+++.++++
T Consensus       118 ~~~~~~l~ksL~al~~lt~~--qp---dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  118 SPNESVLKKSLEAINSLTHK--QP---DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             CCchhHHHHHHHHHHHhhcC--Cc---chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            45666777777777766543  22   244566788888888653 2378888889999998888899999999999999


Q ss_pred             HHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          163 IFVKLLYS-PSDDVREQAVWALGNIAGDSP---------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       163 ~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      .+.+.|.. ....+.+.+.|++.-+..++.         .....+...|++..|...+...-++.+...++.+|..|+-.
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99987765 334577779999999876553         23456677778889999997777899999999999999877


Q ss_pred             CCCCChhhhhchHHHHHHhhccC-Chh---HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCChhhHHHHH
Q 009184          233 KPQPPFDQVSPALPALAHLIHSN-DDE---VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPSVLIPAL  306 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~-d~~---v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~v~~~al  306 (541)
                      +.........|++..++.++.+. +..   ....+|..|..++. +++....+++.|+.+.++.++  ..++|.+...++
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~  351 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM  351 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence            65555566789999999999863 333   45677888888874 455667899999999999987  346789999999


Q ss_pred             HHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHH
Q 009184          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGP  385 (541)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  385 (541)
                      .+++-++-..+++...+++.|+-...++.|+-. ....+++.|||.+.|++..+.++..           .++. ..++.
T Consensus       352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~-----------~~l~-~GiE~  419 (461)
T KOG4199|consen  352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRT-----------ILLA-NGIEK  419 (461)
T ss_pred             HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccc-----------hHHh-ccHHH
Confidence            999999999999998999999999999988743 3568999999999999998888876           6665 56788


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          386 LVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       386 L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      |+......++.....|-.+|..+-.
T Consensus       420 Li~~A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  420 LIRTAKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             HHHHHHhcCccHHHHHHHHHHhcCc
Confidence            8888888888888888888888754

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.68  E-value=1.1e-13  Score=126.10  Aligned_cols=317  Identities=16%  Similarity=0.180  Sum_probs=245.9

Q ss_pred             cCCHHHHHHhh---cCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCC
Q 009184          115 SGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGD  189 (541)
Q Consensus       115 ~g~i~~Lv~lL---~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~  189 (541)
                      .|..+.++.++   .+++ ..+...++.+|..++.+.|+.    ++..++..++.+|..  ++.++....+.++..-|..
T Consensus       103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~  177 (461)
T KOG4199|consen  103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM  177 (461)
T ss_pred             CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            45555555443   3444 778889999999998876654    456778888888754  6788888888888888888


Q ss_pred             ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC-hh---------hhhchHHHHHHhhccC-Chh
Q 009184          190 SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FD---------QVSPALPALAHLIHSN-DDE  258 (541)
Q Consensus       190 ~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~---------~~~~~l~~L~~lL~~~-d~~  258 (541)
                      .+..|+.+++.++.+.+...|.......+.+.++|++.-|...+...- +-         .-.+++..|...+... |+.
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~  257 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD  257 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence            888999999999888888788666666899999999999987763221 11         1245677888888743 799


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-h---hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH
Q 009184          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-P---SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (541)
Q Consensus       259 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~---~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (541)
                      ++.+++.+|..++-. ++..+.+.+.|+++.+++++.+.+ .   .....++..|..++ |++.....+++.|+.+.++.
T Consensus       258 ~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  258 SLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHH
Confidence            999999999999854 446677999999999999997743 2   34567788888777 57777778999999999998


Q ss_pred             hhc-CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--chhHHHHHHHHHHHhccC
Q 009184          335 LLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSG  411 (541)
Q Consensus       335 lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~  411 (541)
                      ++. +..+|.|..+++.+++-++-.+|+.-.           .+++.|+-...++.|+..  ...+++.|+|.+.|++..
T Consensus       336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa-----------~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r  404 (461)
T KOG4199|consen  336 LALRHSDDPLVIQEVMAIISILCLRSPDHSA-----------KAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR  404 (461)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHhcCcchHH-----------HHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence            874 444889999999999999998899888           899999999999999874  468999999999999986


Q ss_pred             CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHH
Q 009184          412 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI  451 (541)
Q Consensus       412 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l  451 (541)
                       ..+++..++..| ++.|+..-...++.....+-.+|+-|
T Consensus       405 -s~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  405 -SAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             -hhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence             345666666655 67777777777766655555555544

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.68  E-value=6.8e-14  Score=131.35  Aligned_cols=398  Identities=12%  Similarity=0.062  Sum_probs=288.4

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC------CcHHHHHHHHHHHHHHhc
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE------DYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~------~~~~i~~~a~~~L~~l~~  146 (541)
                      +.++.+.+...|+|.++-.+..++|.+++... ++....+.+.|+-..+++.|+.-      .+.+...-+...|.|...
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45677777788898999999999999998764 78888899999977777777642      134666677788999999


Q ss_pred             CChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHH
Q 009184          147 GTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (541)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~  223 (541)
                      ++.+.+..+.+.|+++.|...+.-  .+....+.++..++|+.+--. ...+...+......+++++.....+++.+.+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            999999999999999999887754  677788888888888764322 23344556667778888887777888899999


Q ss_pred             HHHHhhhcCCCCCChhhhhchHHHHHHhhcc-CC-------hhHHHHHHHHHHHhccCChHHHHHHHHhC-cHHHHHHhh
Q 009184          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHS-ND-------DEVLTDACWALSYLSDGTNDKIQAVIEAG-VFPRLAEFL  294 (541)
Q Consensus       224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~d-------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~l~~L~~lL  294 (541)
                      ..+...+.++...-.....|.+..++.+++. .+       -.....++....-+..++++ .+.+...+ +++.+.+.+
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHh
Confidence            9999999887555555557788888888764 21       11233444444444445544 45555555 899999999


Q ss_pred             CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC----CchhHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 009184          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITAGNREQIQVIMHVH  370 (541)
Q Consensus       295 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~  370 (541)
                      .+++......+..+|||++..++.. ..+++.+++..|+.+|...    .+-+++..++.+|.|++-.-+. ..      
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-ka------  396 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-KA------  396 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-hh------
Confidence            9999999999999999999855544 4788899999999999652    1567889999999999984333 33      


Q ss_pred             hhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHH-HcCChHHHhhhcCCCChH-HHHHHHHHH
Q 009184          371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCDLLVCPDPR-IVTVCLEGL  448 (541)
Q Consensus       371 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~lL~~~~~~-~~~~~l~~L  448 (541)
                           .++.+|+.+.++..++...|.+...-+..+.-+..+... ..-.+. ....++.|++--+++|.. +.--..+.+
T Consensus       397 -----~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~-~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll  470 (604)
T KOG4500|consen  397 -----HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY-IACELAKNPELFEKLVDWSKSPDFAGVAGESNRLL  470 (604)
T ss_pred             -----hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH-HHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHH
Confidence                 788999999999999999999999888888877664221 222233 235577777776777654 555555666


Q ss_pred             HHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHH
Q 009184          449 ENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE  495 (541)
Q Consensus       449 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~  495 (541)
                      .-+++..-..+         +.-.+...||++........++--.+.
T Consensus       471 ~~lIkHs~~kd---------v~~tvpksg~ik~~Vsm~t~~hi~mqn  508 (604)
T KOG4500|consen  471 LGLIKHSKYKD---------VILTVPKSGGIKEKVSMFTKNHINMQN  508 (604)
T ss_pred             HHHHHhhHhhh---------hHhhccccccHHHHHHHHHHhhHHHhH
Confidence            66665432211         344455677777766665444444443

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.7e-14  Score=142.02  Aligned_cols=404  Identities=16%  Similarity=0.182  Sum_probs=250.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHH-HHh---cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-VIR---SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~i~---~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~  148 (541)
                      +.+|.+.+.|.+++...+.-|..+|.|+.... ....+. +.+   .-++|.++++.++++ |.+|..|+.|+..+.-..
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeecC
Confidence            46888999999999888889999999987442 111110 000   236899999999998 999999999999877644


Q ss_pred             hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (541)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~  228 (541)
                      +.....-++ ..++.+..+-..+++++|.+.+.+|..+..-.+.--..- -.++++.++... ++.|+++...||..+..
T Consensus       206 ~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~t-qd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  206 TQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRT-QDVDENVALEACEFWLA  282 (885)
T ss_pred             cHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHc-cCcchhHHHHHHHHHHH
Confidence            433322222 356677777778999999999999999886554311111 123566666665 77888999999999999


Q ss_pred             hhcCCCCCC--hhhhhchHHHHHHhhccCChhH--HH-------------------------------------------
Q 009184          229 FCRGKPQPP--FDQVSPALPALAHLIHSNDDEV--LT-------------------------------------------  261 (541)
Q Consensus       229 l~~~~~~~~--~~~~~~~l~~L~~lL~~~d~~v--~~-------------------------------------------  261 (541)
                      ++.......  ......++|.|+.-+..++.++  ..                                           
T Consensus       283 ~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  283 LAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             HhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            998852111  1233566666665443222111  00                                           


Q ss_pred             ---HHHHHHHHhccCChHHHHHHHHhCcHHHHHH----hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH
Q 009184          262 ---DACWALSYLSDGTNDKIQAVIEAGVFPRLAE----FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (541)
Q Consensus       262 ---~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~----lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (541)
                         ..-|-|...+...-+...-+....+++.++.    .|.+++|.+++.++.++|.++.|+-...-.-+ ..++|.|+.
T Consensus       363 dD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~  441 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLS  441 (885)
T ss_pred             ccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHH
Confidence               0013333322222222222333345555544    45678999999999999999987743321111 247899999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcC--ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184          335 LLSGNYKKSIKKEACWTVSNITAG--NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  412 (541)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  412 (541)
                      +|.+. .+-||.-.||+|+..+.-  .....+           ++.  .++..|++.+-+++.+|++.||.|+..+-..+
T Consensus       442 ~L~DK-kplVRsITCWTLsRys~wv~~~~~~~-----------~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A  507 (885)
T KOG2023|consen  442 LLDDK-KPLVRSITCWTLSRYSKWVVQDSRDE-----------YFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEA  507 (885)
T ss_pred             HhccC-ccceeeeeeeeHhhhhhhHhcCChHh-----------hhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence            99998 999999999999998761  111111           221  35566666667788999999999999998766


Q ss_pred             CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC----
Q 009184          413 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH----  488 (541)
Q Consensus       413 ~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~----  488 (541)
                      ..+...++-.  ++..|+..+.--..+-.....+++..+.+.-...-+     ...|.+.+. .-.+++.+.|.++    
T Consensus       508 ~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln-----~~~YiqiLm-PPLi~KW~~lsd~DKdL  579 (885)
T KOG2023|consen  508 GEELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALN-----KPAYIQILM-PPLIEKWELLSDSDKDL  579 (885)
T ss_pred             cchhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcC-----cHHHHHHhc-cHHHHHHHhcCcccchH
Confidence            6555554322  344444444332222233344566666554322111     112333332 3333444433222    


Q ss_pred             --------------------CCHHHHHHHHHHHHHh
Q 009184          489 --------------------DNAEIYEKSVKLLETY  504 (541)
Q Consensus       489 --------------------~~~~i~~~a~~il~~~  504 (541)
                                          -.+.||.++..|+++.
T Consensus       580 fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t  615 (885)
T KOG2023|consen  580 FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKT  615 (885)
T ss_pred             HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence                                3478999999999865

>PRK09687 putative lyase; Provisional

Probab=99.61  E-value=1.2e-13  Score=130.42  Aligned_cols=255  Identities=14%  Similarity=0.120  Sum_probs=199.4

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (541)
                      -++.|..+|.+.+ ..++..|+++|..+..           ..+++.+..++.++++.+|..++|+|+.+-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4778899999888 9999999999998764           13467788889999999999999999998532211    


Q ss_pred             HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 009184          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (541)
Q Consensus       197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~  276 (541)
                        ....++.|..++..++++.++..++.+|.+++......    ...+++.+...+.++++.|+..++++|+.+..  . 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11246667777558889999999999999997654322    23356667777888899999999999977642  1 


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (541)
Q Consensus       277 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (541)
                              ..++.|+.+|.++++.++..|+.+||.+...++         .+++.|+.+|.+. +..||..|+++|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    367889999999999999999999999943232         3466788999888 9999999999999863


Q ss_pred             cCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC-C
Q 009184          357 AGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-C  435 (541)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-~  435 (541)
                        ++                    .++|.|+..+.+++  ++..++.+|+++-.   +         ..++.|..+++ .
T Consensus       221 --~~--------------------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~  264 (280)
T PRK09687        221 --DK--------------------RVLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKF  264 (280)
T ss_pred             --Ch--------------------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhC
Confidence              22                    25778888888765  67889999999854   2         25788888886 7


Q ss_pred             CChHHHHHHHHHHHH
Q 009184          436 PDPRIVTVCLEGLEN  450 (541)
Q Consensus       436 ~~~~~~~~~l~~L~~  450 (541)
                      +|+.++..+.++|..
T Consensus       265 ~d~~v~~~a~~a~~~  279 (280)
T PRK09687        265 DDNEIITKAIDKLKR  279 (280)
T ss_pred             CChhHHHHHHHHHhc
Confidence            889999888887753

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=6e-12  Score=119.94  Aligned_cols=361  Identities=15%  Similarity=0.146  Sum_probs=275.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..+..+++.|..++.++.......|.++.-.  .++...+.+.|++..|+.++...+ ++++...+..+.|++.+ ...+
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSFD-~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSFD-SGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhcccc-cccc
Confidence            3567888999988888888888888887544  566777889999999999999998 99999999999999984 6778


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..++..|.+|.|..++.++..  ...|+..+..++.++. .+..+....+++.+++.+....+..+-...+....|+|-+
T Consensus       380 ~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            889999999999999977543  3457777888877665 6777777788999998877777888877777788899988


Q ss_pred             CCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHh
Q 009184          233 KPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVG  310 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~  310 (541)
                      ..+.+.......+..|...- .+.|.- .   ...+.+++.+.......+++  .+..|...++. .+......++.+++
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~l-L---mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLL-L---MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchH-H---HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            76666666677777777653 444443 2   23566677665544444554  45666666654 45678889999999


Q ss_pred             HhhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHH
Q 009184          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL  389 (541)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~  389 (541)
                      |+.-..-...+.+-....+|++-..|..+- ..++.-+..-+++.++.. .....           .+..+++++.|+++
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~-----------Lla~a~~i~tlieL  598 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCAR-----------LLAPAKLIDTLIEL  598 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHH-----------HhCccccHHHHHHH
Confidence            998766666666667899999999887653 345777777778887764 33333           56688999999999


Q ss_pred             hhc--CchhHHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhh
Q 009184          390 LEN--AEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN  460 (541)
Q Consensus       390 l~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~  460 (541)
                      |+.  .|.++....++++..+...  .....++++ ...-..+++++...+.+++..+-.+|..+........+
T Consensus       599 L~a~QeDDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK  670 (791)
T KOG1222|consen  599 LQACQEDDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK  670 (791)
T ss_pred             HHhhcccchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence            987  4678888889998888874  344556664 56667899999999999999998999888877766543

>PRK09687 putative lyase; Provisional

Probab=99.59  E-value=3.7e-13  Score=127.11  Aligned_cols=254  Identities=15%  Similarity=0.098  Sum_probs=197.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .++.+...|.+.+..++..|+..|..+-.            ..+++.+..++++++ +.++..|+++|+.+......   
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCccc---
Confidence            45788999999999999999999987632            235778888888888 99999999999998752211   


Q ss_pred             HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          154 VVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       154 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                         ....++.|..+ ++++++.|+..|+.+||+++......     ...++..+...+ .+++..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence               11246777766 67789999999999999997443311     111344455556 66789999999999975532 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                               ...++.|+.++.++++.|+..++.+|+.+...++         .+++.|+..|.+.++.++..|+++|+.+
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence                     4578999999999999999999999999843333         3567789999999999999999999986


Q ss_pred             hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh-
Q 009184          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE-  391 (541)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~-  391 (541)
                      -.           ..+++.|+..|.++ +  ++..++.+|+++..  +.                    .+|.|..++. 
T Consensus       220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~--------------------a~p~L~~l~~~  263 (280)
T PRK09687        220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT--------------------LLPVLDTLLYK  263 (280)
T ss_pred             CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh--------------------HHHHHHHHHhh
Confidence            43           24688999999886 4  67889999998854  22                    5678888886 


Q ss_pred             cCchhHHHHHHHHHHH
Q 009184          392 NAEFDIKKEAAWAISN  407 (541)
Q Consensus       392 ~~~~~v~~~a~~aL~n  407 (541)
                      .+|..++..|.++|..
T Consensus       264 ~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        264 FDDNEIITKAIDKLKR  279 (280)
T ss_pred             CCChhHHHHHHHHHhc
Confidence            6799999999998863

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.59  E-value=1.4e-12  Score=129.11  Aligned_cols=364  Identities=15%  Similarity=0.107  Sum_probs=248.8

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVI  156 (541)
Q Consensus        78 l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~i~  156 (541)
                      ++..+...+|+....|..-..+.+.+. .++...+++.|.++.|..+++..+ .++.+.+.+.++.....+.......++
T Consensus        14 ~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL   92 (678)
T KOG1293|consen   14 LLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVL   92 (678)
T ss_pred             HHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHH
Confidence            444556678888889999999988775 555567899999999999998765 366777788888888888888899999


Q ss_pred             hCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhH--HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          157 DHGAVPIFVKLLYSPS-DDVREQAVWALGNIAGDSPRCR--DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       157 ~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      +.+.++.|++++.+++ ..+++.++.++.++...++..-  .......++..+..++ ..+.....+.-+...+++|...
T Consensus        93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~  171 (678)
T KOG1293|consen   93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTK  171 (678)
T ss_pred             HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccc
Confidence            9999999999999988 8999999999999986654211  1111222344444444 2234444455555556666554


Q ss_pred             CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH---HhccCChHHHH----HHHHhCcHHH--HHHhhCCCCh-----
Q 009184          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTNDKIQ----AVIEAGVFPR--LAEFLMHPSP-----  299 (541)
Q Consensus       234 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~l~~~~~~~~~----~~~~~g~l~~--L~~lL~~~~~-----  299 (541)
                      .........++.+.+.-++.......+..++.+++   .+..+++....    ...+.|+.++  +.+++++++.     
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence            33444445666666666666666667777777777   44444332221    1222233331  1222222211     


Q ss_pred             --------------------------------------------------------------------------------
Q 009184          300 --------------------------------------------------------------------------------  299 (541)
Q Consensus       300 --------------------------------------------------------------------------------  299 (541)
                                                                                                      
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence                                                                                            


Q ss_pred             ------------------------------------------------------------hhHHHHHHHHhHhhcCCchh
Q 009184          300 ------------------------------------------------------------SVLIPALRTVGNIVTGDDMQ  319 (541)
Q Consensus       300 ------------------------------------------------------------~v~~~al~~L~nl~~~~~~~  319 (541)
                                                                                  ..+.+||.++-+++..-+..
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                        12222333333222211111


Q ss_pred             HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK  399 (541)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~  399 (541)
                      ..-+-...+...|++++..+ +..|+..+..+|+|+.-...+...           .++..|++..+..++.+.++.++.
T Consensus       412 ~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~ks-----------kfl~~ngId~l~s~~~~~~~n~r~  479 (678)
T KOG1293|consen  412 RTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKS-----------KFLRNNGIDILESMLTDPDFNSRA  479 (678)
T ss_pred             HcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHH-----------HHHHcCcHHHHHHHhcCCCchHHH
Confidence            11112345677888888777 889999999999999986666666           899999999999999999999999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184          400 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       400 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~  455 (541)
                      .+.|+|.++..+++......+...=....|..+.+++|+.++++++..++|+....
T Consensus       480 ~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  480 NSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            99999999998776555555555445667778889999999999999999998653

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.57  E-value=1.6e-13  Score=145.17  Aligned_cols=269  Identities=19%  Similarity=0.173  Sum_probs=224.0

Q ss_pred             HHH-HHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-----------cHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184           89 VQY-ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVI  156 (541)
Q Consensus        89 ~~~-~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-----------~~~i~~~a~~~L~~l~~~~~~~~~~i~  156 (541)
                      -++ .|+..|.|+ +.+ .++.+.+.+.|++..+-+||.-..           +..++..|..+|+||+.|...++..+.
T Consensus       313 H~lcaA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LC  390 (2195)
T KOG2122|consen  313 HQLCAALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLC  390 (2195)
T ss_pred             hhhHHHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            344 666777776 443 788999999999999988875321           246899999999999999888887777


Q ss_pred             h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh-CCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-
Q 009184          157 D-HGAVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (541)
Q Consensus       157 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-  233 (541)
                      . .|++..++..|.+...++....+.+|.||+ .-+...+..+-+.|-+..|.........+..+..++.+||||+.+. 
T Consensus       391 s~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  391 SQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccc
Confidence            5 599999999999988899999999999998 4444467777788888888887767778888999999999999876 


Q ss_pred             -CCCChhhhhchHHHHHHhhccC----ChhHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 009184          234 -PQPPFDQVSPALPALAHLIHSN----DDEVLTDACWALSYLS---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (541)
Q Consensus       234 -~~~~~~~~~~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~---~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a  305 (541)
                       ....+..+.|++-.|+.+|...    .-.+++.+-.+|.|.+   ...+...+.+.+...+..|+..|++.+..+...+
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNa  550 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNA  550 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecc
Confidence             3445667799999999999754    3457777777776665   3455566778889999999999999999999999


Q ss_pred             HHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (541)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (541)
                      |.+|+||+..+++..+.+++.|.+++|..++.+. +..+-.-++.+|.|+....+
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence            9999999999999989999999999999999999 88999999999999988543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.57  E-value=8.9e-13  Score=121.54  Aligned_cols=237  Identities=19%  Similarity=0.223  Sum_probs=183.1

Q ss_pred             hhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh
Q 009184          241 VSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (541)
Q Consensus       241 ~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  319 (541)
                      ..+-++.|+.+|.. .|+.++..++.++++.+..+ .....+.+.|+++.+..+|.++++.++..|+.++.|++...+.+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            35667889999984 58999999999999987655 45567888899999999999999999999999999998765544


Q ss_pred             HHHHHhcCchHHHHHhh-cCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHH
Q 009184          320 TQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK  398 (541)
Q Consensus       320 ~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~  398 (541)
                      . . ++. .++.+.... ..+-+..++..+..+|.|++..+..+             .++ .+.++.++.++..++..+|
T Consensus        89 ~-~-Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~-------------~~l-~~~i~~ll~LL~~G~~~~k  151 (254)
T PF04826_consen   89 E-Q-IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH-------------HML-ANYIPDLLSLLSSGSEKTK  151 (254)
T ss_pred             H-H-HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh-------------hhH-HhhHHHHHHHHHcCChHHH
Confidence            3 2 232 355555543 33336789999999999998753332             333 2579999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHHhhHhhhhc---CCCCcchhhhHhh
Q 009184          399 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNL---GNTDVNVFTQMID  474 (541)
Q Consensus       399 ~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~~~~~~~~---~~~~~~~~~~~i~  474 (541)
                      ..++++|.|++.  ++...+.++..+++..|+.+++.+ +.++...++..+.+|...-.+....   ..-........|.
T Consensus       152 ~~vLk~L~nLS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~  229 (254)
T PF04826_consen  152 VQVLKVLVNLSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFG  229 (254)
T ss_pred             HHHHHHHHHhcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHc
Confidence            999999999998  678889999999999999999876 5678888899999986543332110   0112333446676


Q ss_pred             hcc-hHHHHHHHhcCCCHHHHHHH
Q 009184          475 DAE-GLEKIESLQTHDNAEIYEKS  497 (541)
Q Consensus       475 ~~~-~~~~l~~L~~~~~~~i~~~a  497 (541)
                      +.+ .-++|..|..|++++|+++.
T Consensus       230 e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  230 ESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             cHHHHHHHHHHHHcCCCHHHhhhc
Confidence            666 78899999999999998764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2.4e-11  Score=128.07  Aligned_cols=395  Identities=16%  Similarity=0.164  Sum_probs=267.6

Q ss_pred             CHHHHHHhhc-CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC-hhH
Q 009184           74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT-SEH  151 (541)
Q Consensus        74 ~l~~l~~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~-~~~  151 (541)
                      .++.+...+. +.|++++.-|+..+|+++... .+.+..=.+..+-..|+..+.+...+.++..-+.++..|+... ++.
T Consensus        37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~  115 (1075)
T KOG2171|consen   37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK  115 (1075)
T ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc
Confidence            4567777776 588999999999999998763 3333333344556667776666655899999999999999843 221


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      .     .++++.|.+..+++++..|+.|+..|+.+...-... +..+.+  +.+.+.+.+ .+++..++..++.++..++
T Consensus       116 W-----Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~a~~  187 (1075)
T KOG2171|consen  116 W-----PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALGAFA  187 (1075)
T ss_pred             h-----HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHHHHH
Confidence            1     256788889999999999999999999997543321 111111  233444445 3444449999999999888


Q ss_pred             cCCC--CCChhhhhchHHHHHHhh----ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhH
Q 009184          231 RGKP--QPPFDQVSPALPALAHLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVL  302 (541)
Q Consensus       231 ~~~~--~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~  302 (541)
                      ...+  ..........+|.++..+    ..+|.+....++.+|..++...+......+. .++...+.+..+.  +..+|
T Consensus       188 ~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R  266 (1075)
T KOG2171|consen  188 EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIR  266 (1075)
T ss_pred             HHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHH
Confidence            7654  222334456666555544    4567777788888888887766654443332 3444444444332  45566


Q ss_pred             HHHHHHHhHhhcCCch---------------------------------------------hHHHHH------------h
Q 009184          303 IPALRTVGNIVTGDDM---------------------------------------------QTQCVI------------E  325 (541)
Q Consensus       303 ~~al~~L~nl~~~~~~---------------------------------------------~~~~~~------------~  325 (541)
                      ..|+.+|..++.+.+.                                             .....+            -
T Consensus       267 ~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~  346 (1075)
T KOG2171|consen  267 HLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL  346 (1075)
T ss_pred             HHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh
Confidence            6666666555432110                                             000011            0


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHH
Q 009184          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI  405 (541)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL  405 (541)
                      .-+++.+-.++.+. +..-|+.+..+|+.++.|..+.+.           ..++ .+++.++..+.++++.||..|+.|+
T Consensus       347 p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~-----------~~l~-~Il~~Vl~~l~DphprVr~AA~nai  413 (1075)
T KOG2171|consen  347 PPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMI-----------GNLP-KILPIVLNGLNDPHPRVRYAALNAI  413 (1075)
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHH-----------HHHH-HHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            11345555677777 889999999999999999998887           6554 7889999999999999999999999


Q ss_pred             HHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHH
Q 009184          406 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIES  484 (541)
Q Consensus       406 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  484 (541)
                      +.++..-.++..++ ...-+++.|+..+++. ++.+...+..++-+++....+..      ..+|...+.+.    ++..
T Consensus       414 gQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~------l~pYLd~lm~~----~l~~  482 (1075)
T KOG2171|consen  414 GQMSTDLQPEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI------LEPYLDGLMEK----KLLL  482 (1075)
T ss_pred             HhhhhhhcHHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH------HHHHHHHHHHH----HHHH
Confidence            99988544444333 5567788888888774 56899999999999988766543      34566555432    6777


Q ss_pred             HhcCCCHHHHHHHHHHHH
Q 009184          485 LQTHDNAEIYEKSVKLLE  502 (541)
Q Consensus       485 L~~~~~~~i~~~a~~il~  502 (541)
                      |..+..+.+++.+..-|.
T Consensus       483 L~~~~~~~v~e~vvtaIa  500 (1075)
T KOG2171|consen  483 LLQSSKPYVQEQAVTAIA  500 (1075)
T ss_pred             HhcCCchhHHHHHHHHHH
Confidence            788888888887766554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.52  E-value=9.6e-12  Score=137.19  Aligned_cols=276  Identities=18%  Similarity=0.203  Sum_probs=215.6

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..++.|++.|.++++.++..|+..|..+..            .+.++.|+..|.+++ +.++..|+.+|..+....    
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence            356788899999999999999999987632            336888999998887 999999999998885421    


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                            ...+.|...|.++++.+|..++.+|+.+....            ...++..| .++++.++..++.+|..+-. 
T Consensus       684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                  12356778888899999999999998864221            23456667 78899999999999987521 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                                  .+.|..++.++++.|+..++.+|..+.....         ..++.|..+++++++.++..|+.+|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        2346678889999999999999998864322         2367788999999999999999999988


Q ss_pred             hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      ....          .....+...|.++ ++.||..|+++|+.+..  +                    ..++.|+.+|.+
T Consensus       803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~--------------------~a~~~L~~~L~D  849 (897)
T PRK13800        803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA--D--------------------VAVPALVEALTD  849 (897)
T ss_pred             CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c--------------------chHHHHHHHhcC
Confidence            5421          1224577888888 89999999999987742  2                    234788999999


Q ss_pred             CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHH
Q 009184          393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  450 (541)
Q Consensus       393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~  450 (541)
                      ++..||..|+++|..+.  +++.         ..+.|...+++.|+.|+..+..+|..
T Consensus       850 ~~~~VR~~A~~aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        850 PHLDVRKAAVLALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             CCHHHHHHHHHHHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99999999999999972  2332         35677788899999999999888753

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.52  E-value=2.4e-12  Score=118.72  Aligned_cols=196  Identities=18%  Similarity=0.232  Sum_probs=163.1

Q ss_pred             HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009184          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (541)
Q Consensus       113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  192 (541)
                      .+++-++.|+.+|+...+|.++..|+.++++.+. .+..++.+.+.|+++.+..++..+++.+++.|+++|.|++...+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            4556689999999987669999999999999877 68899999999999999999999999999999999999997766 


Q ss_pred             hHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184          193 CRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  271 (541)
                      .+..+-.  .++.+++.+.. .-+..++..++.+|.+|+.....  .......+|.++.+|.+++..++..++++|.+|+
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            4444432  46777775533 34788999999999999866433  2234668999999999999999999999999999


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcC
Q 009184          272 DGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTG  315 (541)
Q Consensus       272 ~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~  315 (541)
                      .++. ....++..+++..++.++... +.++...++..+.|+..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            7665 456688889999999999775 678899999999999653

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=2.9e-12  Score=126.53  Aligned_cols=312  Identities=14%  Similarity=0.175  Sum_probs=221.1

Q ss_pred             cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009184          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS  190 (541)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  190 (541)
                      ..++|.|.++|.+++ ...++-|..+|..|+.++++..+.-+.    .-.+|.++++.+++++.+|..|+.++..+.-..
T Consensus       127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence            347999999999988 789999999999999988776555221    236899999999999999999999998887554


Q ss_pred             hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 009184          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (541)
Q Consensus       191 ~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  270 (541)
                      +..-..-++. +++.+..+- .+.+++++.++|.++..|..-.+........++++.++...+..|++|...||.....+
T Consensus       206 ~qal~~~iD~-Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~  283 (885)
T KOG2023|consen  206 TQALYVHIDK-FLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL  283 (885)
T ss_pred             cHHHHHHHHH-HHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence            4322222222 455555555 78899999999999999999887777777889999999999999999999999999888


Q ss_pred             ccCChHHHHHHHH--hCcHHHHHHhhCCC---------------------------------------------------
Q 009184          271 SDGTNDKIQAVIE--AGVFPRLAEFLMHP---------------------------------------------------  297 (541)
Q Consensus       271 ~~~~~~~~~~~~~--~g~l~~L~~lL~~~---------------------------------------------------  297 (541)
                      +..+. ....+..  ..++|.|+.-+...                                                   
T Consensus       284 aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD  362 (885)
T KOG2023|consen  284 AEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD  362 (885)
T ss_pred             hcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence            87652 1121111  14555555533211                                                   


Q ss_pred             -----ChhhHHHHHHHHhHhhcCCchhHHHHHhcCc----hHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh
Q 009184          298 -----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQA----LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH  368 (541)
Q Consensus       298 -----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  368 (541)
                           +|.+|+....+|.-++.        ++...+    +|.|-..|.+. +-.+|+.+..++|.|+.|.-...-.   
T Consensus       363 dD~~~dWNLRkCSAAaLDVLan--------vf~~elL~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p---  430 (885)
T KOG2023|consen  363 DDAFSDWNLRKCSAAALDVLAN--------VFGDELLPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVP---  430 (885)
T ss_pred             ccccccccHhhccHHHHHHHHH--------hhHHHHHHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhccc---
Confidence                 13456555555555543        222333    44455555566 7899999999999999865443220   


Q ss_pred             hchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHH-HHHHHHcCChHHHhhhcCCCChHHHHHHHHH
Q 009184          369 VHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ-IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG  447 (541)
Q Consensus       369 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~  447 (541)
                             ++-  .++|.|+.+|.+..+-||.-.||+|+..+.+...+. .+++.  .++..|...+-+++.+++++++.+
T Consensus       431 -------~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsA  499 (885)
T KOG2023|consen  431 -------HLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSA  499 (885)
T ss_pred             -------chH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHH
Confidence                   111  478999999999999999999999999876432221 12222  245555555556788899998888


Q ss_pred             HHHHHH
Q 009184          448 LENILK  453 (541)
Q Consensus       448 L~~l~~  453 (541)
                      +..+-+
T Consensus       500 fAtleE  505 (885)
T KOG2023|consen  500 FATLEE  505 (885)
T ss_pred             HHHHHH
Confidence            776654

>PTZ00429 beta-adaptin; Provisional

Probab=99.48  E-value=3.3e-10  Score=119.80  Aligned_cols=382  Identities=13%  Similarity=0.107  Sum_probs=259.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..++.+++.+.++|.+++.-+.-.+.+.+..  ++..-.+    +++.|.+=+++++ |.+|..|++.+++|-.  ++..
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~  138 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL  138 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence            3678899999999999999888888887643  2222111    3777888888888 9999999999999876  4444


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..+     ++.+.+.+.+.++.||..|+.++.++....++   .+...+.++.|..+| .+.++.+..+|+.+|..++..
T Consensus       139 e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        139 EYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence            433     56788888999999999999999999876663   344567788888877 789999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                      .+. ......+.+..++..+..-++..+..++.+|......+....     ..++..+...|++.++.|...|++++.++
T Consensus       210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            543 234445556666666666677777777777765432222211     25778888999999999999999999998


Q ss_pred             hcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc-----hhhHH---------HH
Q 009184          313 VTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH-----AFSII---------AV  377 (541)
Q Consensus       313 ~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-----~~~~~---------~l  377 (541)
                      ....+ .....+. ..+...++.++ ++ +++++..++..|.-++...+.........+     +..++         .+
T Consensus       284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L  360 (746)
T PTZ00429        284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL  360 (746)
T ss_pred             cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence            86532 2222221 12335566664 44 678998888888777765555443211111     00111         11


Q ss_pred             Hhc----CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184          378 IEA----NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       378 ~~~----~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      .+.    .++..|.+.+.+.+.+++..++.+++.++..- +.     ....++..|+++++.... ++..++..+..|++
T Consensus       361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~-----~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilr  433 (746)
T PTZ00429        361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DS-----VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVR  433 (746)
T ss_pred             cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hH-----HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHH
Confidence            221    24455555666668899999999999998642 22     223578899999876443 45567788888876


Q ss_pred             hhHhhhhcCCCCcchhhhHhhhcchHHHHHH-H--hcCCCHHHHHHHHHHHHHhCC
Q 009184          454 VGEAEKNLGNTDVNVFTQMIDDAEGLEKIES-L--QTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~-L--~~~~~~~i~~~a~~il~~~~~  506 (541)
                      ..+..          +        .+..|.. +  ..-.+++.+....|||-+|-.
T Consensus       434 kyP~~----------~--------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~  471 (746)
T PTZ00429        434 KYPEL----------L--------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD  471 (746)
T ss_pred             HCccH----------H--------HHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence            54321          1        1223322 2  344677787888999999864

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=1.4e-12  Score=107.98  Aligned_cols=119  Identities=35%  Similarity=0.611  Sum_probs=110.6

Q ss_pred             HHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009184          111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS  190 (541)
Q Consensus       111 ~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  190 (541)
                      .+++.|+++.|++++.+++ +.++..++++|.+++..+++....+++.|+++.++.++.++++.++..++|+|+|++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4568899999999999988 999999999999999988999999999999999999999999999999999999999988


Q ss_pred             hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       191 ~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      +..+..+...|+++.++..+ ...+..+++.++|+|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            87888888899999999999 66689999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.46  E-value=1.2e-11  Score=130.30  Aligned_cols=326  Identities=19%  Similarity=0.196  Sum_probs=223.9

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ...+.+++.+.+++...+.-+.-.+..+...  ++..-.+    +++.+.+=|.+++ +.++..|++++++++.  ++..
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence            4789999999999999998888888877643  2322222    4677777788888 9999999999999984  6665


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..+     ++.+.+++.++++.+|..|+.++..+....|..   +... .++.+..++ .++++.++..|+.++..+ +.
T Consensus       113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred             hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence            544     688899999999999999999999998766642   1122 477888888 788899999999999999 22


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                      .+..........+..|..++...++..+..++..+..++.........   ..+++.+..++.+.++.+...+++++..+
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l  258 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL  258 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            211111344556666677777889999999999999888766544311   35778888888888888999999998877


Q ss_pred             hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      .....      .-..+++.|..++.++ ++.++..++.+|..++...+..+.                .....+..+..+
T Consensus       259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~----------------~~~~~~~~l~~~  315 (526)
T PF01602_consen  259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF----------------NQSLILFFLLYD  315 (526)
T ss_dssp             SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG----------------THHHHHHHHHCS
T ss_pred             hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh----------------hhhhhhheecCC
Confidence            65433      2235678899999977 888999999999999876533221                111122222225


Q ss_pred             CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc-CCCChHHHHHHHHHHHHHH
Q 009184          393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VCPDPRIVTVCLEGLENIL  452 (541)
Q Consensus       393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~~~~~~~~~~l~~L~~l~  452 (541)
                      ++..+|..++..|..++..   .....     +++.|...+ +..+++++..++..+..+.
T Consensus       316 ~d~~Ir~~~l~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la  368 (526)
T PF01602_consen  316 DDPSIRKKALDLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA  368 (526)
T ss_dssp             SSHHHHHHHHHHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence            5666777777777766542   22222     344455555 3335555555555544444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.46  E-value=1.4e-11  Score=129.79  Aligned_cols=361  Identities=16%  Similarity=0.186  Sum_probs=252.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .+..+.+.|.++++.++-.|++++.++..   .+-.+     .+++.+.+++.+++ +.+|..|+.++..+....|+...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~-----~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAE-----PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHH-----HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhh-----HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            55667777888899999999999988752   12222     25888899999988 99999999999999986665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      .   . .++.+.+++.++++.++..|+.++..+ ...+.....+ -...+..+.+.+ ...++-.+..++.++..++...
T Consensus       151 ~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~  223 (526)
T PF01602_consen  151 D---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPME  223 (526)
T ss_dssp             G---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSS
T ss_pred             H---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCC
Confidence            2   2 578999999989999999999999999 2222110011 111344444444 6778888999999999887654


Q ss_pred             CCCChhhh--hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          234 PQPPFDQV--SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       234 ~~~~~~~~--~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      +    ...  ..+++.+..++++.++.|...++.++..+.....      .-..+++.+..++.++++.++..++.+|..
T Consensus       224 ~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~  293 (526)
T PF01602_consen  224 P----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQ  293 (526)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred             h----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHH
Confidence            2    222  5688889999998899999999999998875433      223678899999999999999999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL  390 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l  390 (541)
                      ++...+..   + .  .....+..+. ++ +..+|..++.+|..++.  +..+.                .+++.|...+
T Consensus       294 l~~~~~~~---v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~----------------~Il~eL~~~l  348 (526)
T PF01602_consen  294 LAQSNPPA---V-F--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVK----------------EILDELLKYL  348 (526)
T ss_dssp             HCCHCHHH---H-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHH----------------HHHHHHHHHH
T ss_pred             hhcccchh---h-h--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchh----------------hHHHHHHHHH
Confidence            98766221   2 2  2233344555 55 89999999999999985  44454                2677888888


Q ss_pred             h-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchh
Q 009184          391 E-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVF  469 (541)
Q Consensus       391 ~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  469 (541)
                      . ..+.+++..++.+++.++....+ ...     -+++.+++++...+..+...+...+..++...+..+          
T Consensus       349 ~~~~d~~~~~~~i~~I~~la~~~~~-~~~-----~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----------  412 (526)
T PF01602_consen  349 SELSDPDFRRELIKAIGDLAEKFPP-DAE-----WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR----------  412 (526)
T ss_dssp             HHC--HHHHHHHHHHHHHHHHHHGS-SHH-----HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----------
T ss_pred             HhccchhhhhhHHHHHHHHHhccCc-hHH-----HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh----------
Confidence            4 44888999999999988753211 111     246777888877777777777777777775543321          


Q ss_pred             hhHhhhcchHHHHH-HHhcCCCHHHHHHHHHHHHHhCCC
Q 009184          470 TQMIDDAEGLEKIE-SLQTHDNAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       470 ~~~i~~~~~~~~l~-~L~~~~~~~i~~~a~~il~~~~~~  507 (541)
                      ..      .+..+. .+....++++...+.+++.+|-..
T Consensus       413 ~~------~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~  445 (526)
T PF01602_consen  413 EK------ILKKLIELLEDISSPEALAAAIWILGEYGEL  445 (526)
T ss_dssp             HH------HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH
T ss_pred             HH------HHHHHHHHHHHhhHHHHHHHHHhhhcccCCc
Confidence            11      123333 334467788888888888888653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.45  E-value=5.8e-11  Score=131.07  Aligned_cols=278  Identities=18%  Similarity=0.210  Sum_probs=217.2

Q ss_pred             hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 009184          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (541)
Q Consensus       114 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  193 (541)
                      ....++.|+..|.+++ +.+|..|+..|+.+..           .++++.|...|.++++.+|..|+.+|+.+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence            3456789999999888 9999999999998753           2457889999999999999999999988853222  


Q ss_pred             HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 009184          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (541)
Q Consensus       194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  273 (541)
                              ..+.+...| .++++.++..++.+|..+....           ...++..|.++|+.++..++++|..+.. 
T Consensus       685 --------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 --------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             --------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence                    124566777 6688999999999888764221           2456778899999999999999987521 


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (541)
Q Consensus       274 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (541)
                                   .+.|..++.++++.+|..++.+|+.+.....         ..++.|..++.+. ++.+|..|+.+|+
T Consensus       744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg  800 (897)
T PRK13800        744 -------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALA  800 (897)
T ss_pred             -------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence                         1346678999999999999999998865322         2367788999888 8999999999999


Q ss_pred             HHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184          354 NITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  433 (541)
Q Consensus       354 nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL  433 (541)
                      ++... +.                    +++.++..|.++++.||..|+++|..+-.            ...++.|..+|
T Consensus       801 ~~g~~-~~--------------------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L  847 (897)
T PRK13800        801 ELGCP-PD--------------------DVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEAL  847 (897)
T ss_pred             hcCCc-ch--------------------hHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHh
Confidence            98542 11                    22457788888999999999999997743            12568999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009184          434 VCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  503 (541)
Q Consensus       434 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~  503 (541)
                      +++++.|+..+..+|..+ ...+                    .....|....++++.+|+..|...|+.
T Consensus       848 ~D~~~~VR~~A~~aL~~~-~~~~--------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        848 TDPHLDVRKAAVLALTRW-PGDP--------------------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             cCCCHHHHHHHHHHHhcc-CCCH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999999999999999885 1111                    113567778889999999999888753

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.43  E-value=3.4e-12  Score=105.66  Aligned_cols=117  Identities=33%  Similarity=0.503  Sum_probs=109.0

Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (541)
Q Consensus       281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (541)
                      +++.|+++.++.+|.++++.++..++++|++++...+.....+++.|+++.++.+|.++ ++.++..++|+|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56789999999999999999999999999999998888888888899999999999998 99999999999999999877


Q ss_pred             HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhc
Q 009184          361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  409 (541)
Q Consensus       361 ~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~  409 (541)
                      ....           .+.+.|+++.|++.+...+.+++..++|+|.+++
T Consensus        82 ~~~~-----------~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKL-----------IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHH-----------HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            7676           7788999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.42  E-value=1.6e-10  Score=114.83  Aligned_cols=366  Identities=17%  Similarity=0.167  Sum_probs=256.5

Q ss_pred             CCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH
Q 009184          127 REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV  204 (541)
Q Consensus       127 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~  204 (541)
                      +.+ |+....|..-..|.+.+.+.....+++.|+++.|+.+++.  +..+...+.+.+++..+.......+.+++.+.++
T Consensus        20 ~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll   98 (678)
T KOG1293|consen   20 HLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL   98 (678)
T ss_pred             cCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence            344 7777888889999999999998899999999999999876  4566766677777777766666777888888999


Q ss_pred             HHHHhhcCCCh-hhHHHHHHHHHHhhhcCCCCCChh---hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH
Q 009184          205 PLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFD---QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (541)
Q Consensus       205 ~Ll~~l~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~  280 (541)
                      .++.++ ..+| ..++...+.++.++....+..+..   ....+++.+..++..+...+...-+....+++... +....
T Consensus        99 ~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~I  176 (678)
T KOG1293|consen   99 KLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLI  176 (678)
T ss_pred             HHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhhe
Confidence            999999 5555 888999999999998877444333   33556666655555344445555555556666554 34455


Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHh---HhhcCCchhHHHH----HhcCchH--HHHHhhcCCCchhHHHHHHHH
Q 009184          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVG---NIVTGDDMQTQCV----IEYQALP--CLLNLLSGNYKKSIKKEACWT  351 (541)
Q Consensus       281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~---nl~~~~~~~~~~~----~~~~~l~--~L~~lL~~~~~~~v~~~a~~~  351 (541)
                      +.++|+.+.+.-++...+...|..|+.+++   ++...++.....+    .+.|+.+  .+.++++++ +...+-.++.+
T Consensus       177 l~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~-~~s~~l~sl~c  255 (678)
T KOG1293|consen  177 LCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP-DFSERLRSLEC  255 (678)
T ss_pred             eccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC-CccHHHHHHHH
Confidence            788899999988888888889999999999   7777776554333    2445554  334444444 44444445544


Q ss_pred             HHHHhcCChH----------------------------------------------------------------------
Q 009184          352 VSNITAGNRE----------------------------------------------------------------------  361 (541)
Q Consensus       352 L~nl~~~~~~----------------------------------------------------------------------  361 (541)
                      +.++.+++..                                                                      
T Consensus       256 l~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf  335 (678)
T KOG1293|consen  256 LVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLF  335 (678)
T ss_pred             HHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHH
Confidence            4444432200                                                                      


Q ss_pred             ----------HHHHHHhhc-------------------------------------hh------------hHHHHH----
Q 009184          362 ----------QIQVIMHVH-------------------------------------AF------------SIIAVI----  378 (541)
Q Consensus       362 ----------~~~~~~~~~-------------------------------------~~------------~~~~l~----  378 (541)
                                ....+..++                                     .|            +-...+    
T Consensus       336 ~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~  415 (678)
T KOG1293|consen  336 ICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL  415 (678)
T ss_pred             HHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                      000000000                                     00            001112    


Q ss_pred             -hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184          379 -EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       379 -~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~  457 (541)
                       ..++..+|++++..++..|+..++.+|+|++..- ......++..|+|+.+.+++...++.++...+++|++++-..+.
T Consensus       416 ~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmef-s~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de  494 (678)
T KOG1293|consen  416 KRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEF-SNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE  494 (678)
T ss_pred             ccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhc-ccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence             3467899999999999999999999999998742 24556778999999999999999999999999999999865544


Q ss_pred             hhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184          458 EKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       458 ~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~  507 (541)
                      ...     ...++.     =+...|..+.+.++..|.+.+.+++..+.-.
T Consensus       495 ~~k-----~~~~~k-----i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  495 EEK-----FQLLAK-----IPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHH-----HHHHHH-----hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            321     111222     2346788899999999999999999887643

>PTZ00429 beta-adaptin; Provisional

Probab=99.42  E-value=1.7e-09  Score=114.43  Aligned_cols=343  Identities=16%  Similarity=0.088  Sum_probs=227.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .+..+.+.|.+.+...+..|++.+......+ .+.      +.+++..++++.+.+ ..++.-+...+.+++...++..-
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pelal  104 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKAL  104 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHHH
Confidence            4567788888888888888887766655443 332      235777888898888 99999999999999886666543


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      .     +++.|.+=+.++++.+|..|++++++|-.  +    .+++. .+.++.+.+ .+.++-|++.|+.++..+.+..
T Consensus       105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~----~i~e~-l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~  171 (746)
T PTZ00429        105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--S----SVLEY-TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD  171 (746)
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--H----HHHHH-HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence            2     36788888999999999999999998742  2    12222 456677777 7889999999999999998765


Q ss_pred             CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 009184          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (541)
Q Consensus       234 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  313 (541)
                      |.  .....+.++.|..+|...|+.|...|+.+|..+....+....  ...+.+..++..+..-++-.+...+.+|....
T Consensus       172 pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~  247 (746)
T PTZ00429        172 MQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR  247 (746)
T ss_pred             cc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence            42  223457888999999999999999999999999865544332  33456777888887666667777787775543


Q ss_pred             cCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHh----------hc--hhhH-----H
Q 009184          314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMH----------VH--AFSI-----I  375 (541)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~----------~~--~~~~-----~  375 (541)
                      ..++...     ..++..+...|++. ++.|..+|+.++.++... .++.+..+..          ..  ...|     +
T Consensus       248 P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I  321 (746)
T PTZ00429        248 PSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNI  321 (746)
T ss_pred             CCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHH
Confidence            2222221     24677888889998 899999999999988753 2332221100          00  0011     0


Q ss_pred             HHH---hcCcHHHHHHHh---hcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHH
Q 009184          376 AVI---EANIIGPLVALL---ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE  449 (541)
Q Consensus       376 ~l~---~~~~l~~L~~~l---~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~  449 (541)
                      ..+   ...++..-++.+   .++...++...+..|..++...+..   .     +++-|..+....|.+++..++.++.
T Consensus       322 ~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~---~-----IL~EL~eYa~d~D~ef~r~aIrAIg  393 (746)
T PTZ00429        322 HALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAP---E-----ILKELAEYASGVDMVFVVEVVRAIA  393 (746)
T ss_pred             HHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHH---H-----HHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            000   011111111111   1122345666666666665432221   1     3456666666777778888888887


Q ss_pred             HHHHhh
Q 009184          450 NILKVG  455 (541)
Q Consensus       450 ~l~~~~  455 (541)
                      .+....
T Consensus       394 ~lA~k~  399 (746)
T PTZ00429        394 SLAIKV  399 (746)
T ss_pred             HHHHhC
Confidence            776543

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.41  E-value=6.3e-14  Score=108.72  Aligned_cols=91  Identities=43%  Similarity=0.627  Sum_probs=60.6

Q ss_pred             CCCCchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCc--cCCCCCc-hhhhcCCHHHHHH
Q 009184            5 PNSKADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA--NDVNAPG-TAKKLENLPVMVA   80 (541)
Q Consensus         5 ~~~~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~l~~   80 (541)
                      ++..++.|++.||+ |+|++|+|+||++..++|||+||++.|.|||++........+  .+..... .......+|.++.
T Consensus         2 ~~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~   81 (97)
T PF01749_consen    2 SSKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMVA   81 (97)
T ss_dssp             -----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHHH
T ss_pred             CccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHHH
Confidence            34467899999999 699999999999999999999999999999998654333211  1111111 2222346789999


Q ss_pred             hhcCCCHHHHHHHHH
Q 009184           81 GVWSNDSGVQYECTT   95 (541)
Q Consensus        81 ~L~s~~~~~~~~a~~   95 (541)
                      .+.|+|+..++.|..
T Consensus        82 ~v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   82 GVNSDDPEVQLEATQ   96 (97)
T ss_dssp             HHTSSCHHHHHHHHH
T ss_pred             hcCCCCHHHHHHhhC
Confidence            999999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.34  E-value=1.2e-09  Score=107.36  Aligned_cols=323  Identities=12%  Similarity=0.092  Sum_probs=223.7

Q ss_pred             CHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHh-----cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC
Q 009184           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIR-----SGVVPRFVEFLLREDYPQLQFEAAWALTNIASG  147 (541)
Q Consensus        74 ~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~-----~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~  147 (541)
                      ....++..+.. ..+++....+..+..++... +.....+.+     ......++.+|..++ .-++..|+.+|+.+.+.
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            34566676664 55777888888888888763 333444544     356778888998877 89999999999999875


Q ss_pred             ChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC-hhhHHHHHHHH
Q 009184          148 TSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP-KLSMLRNATWT  225 (541)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~-~~~~~~~a~~~  225 (541)
                      .+.........-..+.|...+.+ .+...+..|+.+|..+....+ +|..+.+.+++++|+.+|.... +..++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            44321111111123445555554 346778888999999987776 8998888889999999996544 67889999999


Q ss_pred             HHhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHhCcHHHHHHhhCC--
Q 009184          226 LSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT------NDKIQAVIEAGVFPRLAEFLMH--  296 (541)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~------~~~~~~~~~~g~l~~L~~lL~~--  296 (541)
                      ++-|+...+........++++.++.+++.. .+++..-++.++.|+...+      ......+++.|+++.+-.+...  
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            999998865444444578999999999854 6778888999999998643      1233456666765544444322  


Q ss_pred             CChhhHHHH-------HHHHhHhhcC--------------Cc---------hhHHHHHh--cCchHHHHHhhcCCCchhH
Q 009184          297 PSPSVLIPA-------LRTVGNIVTG--------------DD---------MQTQCVIE--YQALPCLLNLLSGNYKKSI  344 (541)
Q Consensus       297 ~~~~v~~~a-------l~~L~nl~~~--------------~~---------~~~~~~~~--~~~l~~L~~lL~~~~~~~v  344 (541)
                      .++++..-.       -..+..+++.              ++         ++...+-+  ..++..|+.+|..+.++.+
T Consensus       291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence            233322111       0111111110              11         11122222  3467889999965558888


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      ..-||.=++.++...|....           .+-+.|+=..+++++.+++++|+.+|+.|+..+..
T Consensus       371 laVAc~Dige~vr~~P~gr~-----------i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         371 LAVACHDIGEYVRHYPRGKD-----------VVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             eehhhhhHHHHHHHCccHHH-----------HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            89999999999998777776           66678999999999999999999999999998754

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.31  E-value=1.8e-09  Score=106.13  Aligned_cols=353  Identities=14%  Similarity=0.150  Sum_probs=230.3

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC-----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH-----GAVPIFVKLLYSPSDDVREQAVWALGNIAGDS  190 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~  190 (541)
                      ..+..++.+++....+++....+..+..+....+.....+.+.     .....++.+|..++.-+...++..|..++..+
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~  132 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG  132 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence            4577788888776668888888888888888878777777654     45677888998899999999999999998655


Q ss_pred             hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHH
Q 009184          191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALS  268 (541)
Q Consensus       191 ~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~  268 (541)
                      +.........-.+.-+...+....+...+..++.++..|.+.++.+......++++.|+.+|+..  +.+++..++.++.
T Consensus       133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            43211111111233445555333457778888899999998876665454566899999999753  4578888888888


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCc------hhHHHHHhcCchHHHHHhhcCCC-
Q 009184          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-  340 (541)
Q Consensus       269 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-  340 (541)
                      -++-... ........++++.++.+++. ..+++..-++.++.|+...+.      .....+++.|+++.+-.+..... 
T Consensus       213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~  291 (429)
T cd00256         213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD  291 (429)
T ss_pred             HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence            8875544 33445667999999999965 568899999999999998531      23334566676665544443321 


Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHhhchhh-HHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHH
Q 009184          341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFS-IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF  419 (541)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~  419 (541)
                      |+++.... ..|.....   +.++   ....|+ |-.=++.|-+       .. +|--+.+.-|.          +....
T Consensus       292 DedL~edl-~~L~e~L~---~~~k---~ltsfD~Y~~El~sg~L-------~W-Sp~H~se~FW~----------EN~~k  346 (429)
T cd00256         292 DEDLTDDL-KFLTEELK---NSVQ---DLSSFDEYKSELRSGRL-------HW-SPVHKSEKFWR----------ENADR  346 (429)
T ss_pred             cHHHHHHH-HHHHHHHH---HHHH---HcCCHHHHHHHHhcCCc-------cC-CCCCCCchHHH----------HHHHH
Confidence            44443322 22222211   0011   001110 0011111221       11 11111111111          22233


Q ss_pred             HHHc--CChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHH
Q 009184          420 LVIQ--GCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK  496 (541)
Q Consensus       420 l~~~--~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~  496 (541)
                      +-+.  .+++.|+.+|+ +.|+.+...|+.=|+.+++..+..           +..+++.|+.+.+-+|.+|+|++|+..
T Consensus       347 f~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-----------r~i~~~lg~K~~vM~Lm~h~d~~Vr~e  415 (429)
T cd00256         347 LNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-----------KDVVEQLGGKQRVMRLLNHEDPNVRYE  415 (429)
T ss_pred             HHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-----------HHHHHHcCcHHHHHHHhcCCCHHHHHH
Confidence            3332  35788999984 567888888888899998877553           557788999999999999999999999


Q ss_pred             HHHHHHHhC
Q 009184          497 SVKLLETYW  505 (541)
Q Consensus       497 a~~il~~~~  505 (541)
                      |..-+++++
T Consensus       416 AL~avQklm  424 (429)
T cd00256         416 ALLAVQKLM  424 (429)
T ss_pred             HHHHHHHHH
Confidence            988888764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=8.4e-10  Score=111.23  Aligned_cols=320  Identities=18%  Similarity=0.221  Sum_probs=210.9

Q ss_pred             CCHHHHHHhhc----CCCH-HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcC-CCcHHHHHHHHHHHHHHhc
Q 009184           73 ENLPVMVAGVW----SNDS-GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        73 ~~l~~l~~~L~----s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~-~~~~~i~~~a~~~L~~l~~  146 (541)
                      +.+|.++..|.    .+.+ .++..++.++..++..- .|..-.--...++..+++-... +.+..+|..|+.+|.|-..
T Consensus       125 n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i-~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe  203 (859)
T KOG1241|consen  125 NQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI-DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE  203 (859)
T ss_pred             hhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC-CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence            45666666554    3334 37788888888886543 2221111124456666665543 3347899999999998443


Q ss_pred             CCh-hHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184          147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (541)
Q Consensus       147 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~  225 (541)
                      -.. ......-.+-++...+..-++++.+++..|+.||..|..---++...-+....+..-+..+ +++++++...+...
T Consensus       204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEF  282 (859)
T KOG1241|consen  204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEF  282 (859)
T ss_pred             HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHH
Confidence            111 1111111233556677777889999999999999998754333333323333444555566 68899999999999


Q ss_pred             HHhhhcCCCC-------------CC--h----hhhhchHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHHHH
Q 009184          226 LSNFCRGKPQ-------------PP--F----DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDKIQ  279 (541)
Q Consensus       226 L~~l~~~~~~-------------~~--~----~~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~l~~~~~~~~~  279 (541)
                      .+++|.....             ++  .    .....++|.|+++|...       +..+...|-.||.-++....+.  
T Consensus       283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~--  360 (859)
T KOG1241|consen  283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD--  360 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc--
Confidence            9998865311             10  1    12257788888888642       2334555555665554332211  


Q ss_pred             HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184          280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (541)
Q Consensus       280 ~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (541)
                       ++. .+++.+-.-+++++|.-+..|..++|.+..+.+.....-+-.++++.++.++.++ .-.++..+.|+++.++...
T Consensus       361 -Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  361 -IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             -chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhc
Confidence             222 4555555567889999999999999999999887776677789999999999977 8889999999999999865


Q ss_pred             hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      ++.+.-          ...-...++.++.-|. +.|++...++|++.+++.
T Consensus       438 ~e~~~n----------~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  438 PEAIIN----------QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE  477 (859)
T ss_pred             hhhccc----------HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence            543320          2223355666666555 468999999999999984

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=9.9e-09  Score=104.71  Aligned_cols=259  Identities=18%  Similarity=0.171  Sum_probs=199.7

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHH-hcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          118 VPRFVEFLLREDYPQLQFEAAWALTNI-ASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      +..|++-|+...++..|.+|+.-|+.+ +.++.+....+--..++|.|+.+|+. .+.++.-+|+++|.++|.--|....
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            556666666663488888888777754 44666665555445678999999988 6799999999999999988887788


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-C
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-T  274 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~  274 (541)
                      .+++.++|+.|+..|..-...++.+.++.+|-.+++..+.  .....|.+...+..|.--...++..|+.+..|+|.. .
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~--AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK--AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8889999999999886777889999999999999987543  334577888888877666777889999999999854 3


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC---chhHHHHHhcCchHHHHHhhcCCC---chhHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD---DMQTQCVIEYQALPCLLNLLSGNY---KKSIKKEA  348 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~---~~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~a  348 (541)
                      ++....+.+  .+|.|..+|++.+.+..+.++-++..++.+.   +...+.+...+++....+++.-.+   +..+..-.
T Consensus       327 sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~v  404 (1051)
T KOG0168|consen  327 SDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGV  404 (1051)
T ss_pred             CccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHH
Confidence            344455554  7999999999999999999999999998654   345567778899999999887652   23455666


Q ss_pred             HHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh
Q 009184          349 CWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE  391 (541)
Q Consensus       349 ~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~  391 (541)
                      +..|+-++++++....           .+...++...|.++|.
T Consensus       405 Irmls~msS~~pl~~~-----------tl~k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  405 IRMLSLMSSGSPLLFR-----------TLLKLDIADTLKRILQ  436 (1051)
T ss_pred             HHHHHHHccCChHHHH-----------HHHHhhHHHHHHHHHh
Confidence            7788888888787776           6666666666666654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=6.3e-09  Score=105.07  Aligned_cols=358  Identities=14%  Similarity=0.067  Sum_probs=226.8

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 009184           80 AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (541)
Q Consensus        80 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g  159 (541)
                      ..|.+..|...-.|..++..++..+ -|+.++   .++++.|+.....+....++..++.+|+.+|.+-....-.-..+.
T Consensus        97 ~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n~w---p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~  172 (859)
T KOG1241|consen   97 RTLGSPEPRRPSSAAQCVAAIACIE-LPQNQW---PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSND  172 (859)
T ss_pred             HHcCCCCCCccchHHHHHHHHHHhh-CchhhC---HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhH
Confidence            3555566666667777777777664 444333   456777777777666345899999999999985432211112245


Q ss_pred             ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CC
Q 009184          160 AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQ  235 (541)
Q Consensus       160 ~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g-~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~  235 (541)
                      ++..+++-...  ++..+|-.|+.+|.|--......-..-.+.+ ++...+..- ++++.+++..+..+|..+..-. ..
T Consensus       173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~LyY~~  251 (859)
T KOG1241|consen  173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMSLYYEF  251 (859)
T ss_pred             HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            67777776655  7789999999999875422110000001111 222333333 6789999999999999887543 11


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHH---------------HHHHH---HhCcHHHHHHhhCC-
Q 009184          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK---------------IQAVI---EAGVFPRLAEFLMH-  296 (541)
Q Consensus       236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~---------------~~~~~---~~g~l~~L~~lL~~-  296 (541)
                      ...-....+++.-+.-+.+++++|...+...-+++++..-+.               ...+.   -.+++|.|+++|.. 
T Consensus       252 m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kq  331 (859)
T KOG1241|consen  252 MEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQ  331 (859)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhC
Confidence            111122334555556677889999888887777777432210               00011   11567888888833 


Q ss_pred             ------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 009184          297 ------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH  370 (541)
Q Consensus       297 ------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~  370 (541)
                            ++|.....|-.||.-++.......   +. -+++.+-.-++++ +.+-|..|+.+++.+..+......      
T Consensus       332 de~~d~DdWnp~kAAg~CL~l~A~~~~D~I---v~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~L------  400 (859)
T KOG1241|consen  332 DEDDDDDDWNPAKAAGVCLMLFAQCVGDDI---VP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKL------  400 (859)
T ss_pred             CCCcccccCcHHHHHHHHHHHHHHHhcccc---hh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhh------
Confidence                  357788888888887775443221   11 3455555666777 888999999999999986444433      


Q ss_pred             hhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHH
Q 009184          371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  450 (541)
Q Consensus       371 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~  450 (541)
                           .-+-.+.+|.++.++.++...++..+.|+|+.++............-.+.+..+..=|. +.|.+...++|++..
T Consensus       401 -----t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~  474 (859)
T KOG1241|consen  401 -----TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFIS  474 (859)
T ss_pred             -----hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHH
Confidence                 33344899999999998888999999999999987532111111112233444444332 467889999999999


Q ss_pred             HHHhhHhhh
Q 009184          451 ILKVGEAEK  459 (541)
Q Consensus       451 l~~~~~~~~  459 (541)
                      |.+...+..
T Consensus       475 Laea~~eA~  483 (859)
T KOG1241|consen  475 LAEAAYEAA  483 (859)
T ss_pred             HHHHHHHhc
Confidence            997655543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=8.3e-08  Score=96.52  Aligned_cols=258  Identities=16%  Similarity=0.147  Sum_probs=184.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      ..+.++.+|.+.-|-++..|+-.+.++.-.. ++..+     ..+|.|++-|.+++ |.++..|+.+++.++..+|.+.-
T Consensus       145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc
Confidence            4577888899999999999999998887543 22232     25999999999999 99999999999999998887653


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh--hh
Q 009184          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN--FC  230 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~--l~  230 (541)
                           .+-|.+.++|.. .+.=+....+..+++++--.|.....     .+++|.+++....-.++...+..++..  ++
T Consensus       218 -----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s  287 (877)
T KOG1059|consen  218 -----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMS  287 (877)
T ss_pred             -----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence                 245888888755 33334455788888888766654444     688999999554445555555554432  33


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (541)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  310 (541)
                      .+. ........-+++.|-.++.++|+.++.-.+.+++.+....+...+.     --+.++++|.+.++++|..|+..+-
T Consensus       288 ~g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  288 SGM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             cCC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence            321 2334445677888888999999999999999999999777755442     3467889999999999999999998


Q ss_pred             HhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184          311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (541)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (541)
                      -++...  +..     .++..|+..+........|.+.+.-+..+|+.+..
T Consensus       362 gmVskk--Nl~-----eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY  405 (877)
T KOG1059|consen  362 GMVSKK--NLM-----EIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY  405 (877)
T ss_pred             HHhhhh--hHH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence            887532  221     23455665555442446777777777777764333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=2e-07  Score=94.81  Aligned_cols=324  Identities=18%  Similarity=0.184  Sum_probs=238.0

Q ss_pred             CCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCCh-
Q 009184           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS-  149 (541)
Q Consensus        73 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~-  149 (541)
                      |.++.+++.+.+. -.+.|..|++.|..+...    ....+. ..+++.|++.|+.+. ++++...++..+.++....+ 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            6889999988864 478899999999888643    333443 445888999988653 58999999999999887442 


Q ss_pred             -----h----------HHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhc-CChHHHHHhhc
Q 009184          150 -----E----------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQ-GGLVPLLAQLN  211 (541)
Q Consensus       150 -----~----------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~-g~i~~Ll~~l~  211 (541)
                           +          ..+.++ ..+.|..|+..+...+-.||..++..|.++.... ++.++.++.. .+|..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 1          122333 4688999999999999999999999999987544 4577776643 3689999999 


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCCCCh-hhhhchHHHHHHhhccC---Ch-hHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009184          212 GQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSN---DD-EVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (541)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~---d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  286 (541)
                      .+..+.++..++..|+.+.++.+.... .....++..|..++...   |. -|..+|+..+.+|..++..+.+.+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            777888999999999999999865543 44578889999998753   33 57899999999999998888898999999


Q ss_pred             HHHHHHhhCC---CC-----hh-----hHHHHHHHHhHhhcCCc-----hhH-HHHHhcCchHHHHHhhcCCC-chhHHH
Q 009184          287 FPRLAEFLMH---PS-----PS-----VLIPALRTVGNIVTGDD-----MQT-QCVIEYQALPCLLNLLSGNY-KKSIKK  346 (541)
Q Consensus       287 l~~L~~lL~~---~~-----~~-----v~~~al~~L~nl~~~~~-----~~~-~~~~~~~~l~~L~~lL~~~~-~~~v~~  346 (541)
                      +++|.++|..   .+     |.     -...++.++..++.-..     .+. ..+..++++..|..++-++. ..+|+.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988843   12     22     23346666666665221     122 35567889999999888762 568999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc---------CcHHHHHHHh-h-cCchhHHHHHHHHHHHhccCCC
Q 009184          347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA---------NIIGPLVALL-E-NAEFDIKKEAAWAISNATSGGT  413 (541)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~---------~~l~~L~~~l-~-~~~~~v~~~a~~aL~nl~~~~~  413 (541)
                      ++..+++++.+++.....           .+.+.         ..+-.|+..+ . ...+..|..+.+++..+.....
T Consensus       336 esiitvAevVRgn~~nQ~-----------~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~  402 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQD-----------EFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND  402 (970)
T ss_pred             HHHHHHHHHHHhchHHHH-----------HHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence            999999999998776665           33321         1122222222 2 2357889999999988887543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.08  E-value=1.6e-08  Score=95.96  Aligned_cols=279  Identities=14%  Similarity=0.093  Sum_probs=202.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (541)
                      ++.++..|..++.-+...+.+.+.++++.+ +.......-.-....|-..++++.+++...-|++||..+.. -++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence            678888999999888888999999988764 22211100011233444556664547888889999999998 5889999


Q ss_pred             HHhCCChHHHHHhhC-C-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          155 VIDHGAVPIFVKLLY-S-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       155 i~~~g~i~~L~~lL~-~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ++...++..++..+. + .+-.++-+.+.|++-+.-..+ ..+.+...+.++.|..++..+..+.+.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            998888999998883 3 568899999999999987766 4466678889999999998888999999999999999988


Q ss_pred             CCCCC------hhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHh-------ccC---------------Ch------
Q 009184          233 KPQPP------FDQVSPALPALAHLIH---SNDDEVLTDACWALSYL-------SDG---------------TN------  275 (541)
Q Consensus       233 ~~~~~------~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l-------~~~---------------~~------  275 (541)
                      .+...      ..+...-++..++.|.   .+|+++..+.-..-..|       +..               +.      
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            64322      1222333444445554   24666544432222222       110               00      


Q ss_pred             --HHHHHHHHh--CcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHH
Q 009184          276 --DKIQAVIEA--GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW  350 (541)
Q Consensus       276 --~~~~~~~~~--g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~  350 (541)
                        ++...+.+.  .++..|+.+|... ++.+..-||.=||.++...++....+.+.|+=..++++|.++ +++||.+|..
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence              112223222  4678899999665 588899999999999999999888888999999999999999 9999999999


Q ss_pred             HHHHHhc
Q 009184          351 TVSNITA  357 (541)
Q Consensus       351 ~L~nl~~  357 (541)
                      ++-.+..
T Consensus       432 avQ~lm~  438 (442)
T KOG2759|consen  432 AVQKLMV  438 (442)
T ss_pred             HHHHHHh
Confidence            8877654

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4.3e-08  Score=91.96  Aligned_cols=187  Identities=21%  Similarity=0.251  Sum_probs=157.3

Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH
Q 009184          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (541)
Q Consensus       255 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (541)
                      .+.+-+..++.-|.+++..-+ +...++..|++..++..+.+++..+|..|+++||.++.+++.....+++.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            456667888888888775433 4566888899999999999999999999999999999999998899999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--CchhHHHHHHHHHHHhccCC
Q 009184          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSGG  412 (541)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~~  412 (541)
                      .+.++.+..+|..|.++++.+.++++....           .+...+....|...+.+  .+...+..++..+..++...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~-----------~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~  242 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQD-----------EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED  242 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHH-----------HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence            999876778889999999999999999888           89988999999999999  57889999999999998753


Q ss_pred             CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          413 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       413 ~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                       ......+...+.-..+..+..+.+.++...++.++..++..
T Consensus       243 -~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  243 -KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             -hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence             33334445567777778888888888888888777766654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.03  E-value=1.1e-07  Score=90.28  Aligned_cols=322  Identities=12%  Similarity=0.086  Sum_probs=223.5

Q ss_pred             CHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHH-------hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 009184           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVI-------RSGVVPRFVEFLLREDYPQLQFEAAWALTNIA  145 (541)
Q Consensus        74 ~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i-------~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~  145 (541)
                      .+..++..+.. ..++...-++..+-.+++..  +....+.       ..-.-..++.+|...+ +-+...+.++++.++
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence            45677777764 34566677888888888763  2222111       1234677888898888 788888999999988


Q ss_pred             cCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHH
Q 009184          146 SGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNAT  223 (541)
Q Consensus       146 ~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l-~~~~~~~~~~~a~  223 (541)
                      .-.+......--.=....|...+.+ .+.+....|++||..+...++ +|..+....++..++..+ ....+..++...+
T Consensus       143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e-yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE-YRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc-hhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            7433221110000012334444555 667777888999999987766 888888887888888888 4556788999999


Q ss_pred             HHHHhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHhCcHHHHHHhhCC
Q 009184          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTN------DKIQAVIEAGVFPRLAEFLMH  296 (541)
Q Consensus       224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~------~~~~~~~~~g~l~~L~~lL~~  296 (541)
                      .+++-|+.+.+........+.++.|..+++.. .+.|..-++.++.|++...+      +....++..++.+.+-.+...
T Consensus       222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~r  301 (442)
T KOG2759|consen  222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEER  301 (442)
T ss_pred             HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhc
Confidence            99999998875555555678999999999854 67788889999999987664      223445555655555444422


Q ss_pred             --CChhhHHHHHH-------HHhHhhcC--------------Cc---------hhHHHHH--hcCchHHHHHhhcCCCch
Q 009184          297 --PSPSVLIPALR-------TVGNIVTG--------------DD---------MQTQCVI--EYQALPCLLNLLSGNYKK  342 (541)
Q Consensus       297 --~~~~v~~~al~-------~L~nl~~~--------------~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~  342 (541)
                        .++++....-.       -...+++.              ++         ++...+.  +..++..|+.+|+.+.+|
T Consensus       302 kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp  381 (442)
T KOG2759|consen  302 KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDP  381 (442)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCC
Confidence              34433322111       11112211              11         1122222  235789999999988679


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      .+-.-||.-++...+..|+...           .+.+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus       382 ~iL~VAc~DIge~Vr~yP~gk~-----------vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  382 IILCVACHDIGEYVRHYPEGKA-----------VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             ceeehhhhhHHHHHHhCchHhH-----------HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            9999999999999999899887           77789999999999999999999999999988865

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.02  E-value=6.9e-08  Score=94.59  Aligned_cols=361  Identities=13%  Similarity=0.064  Sum_probs=220.5

Q ss_pred             CCHHHHHHhhc----CCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcC-CHHHH-HHhhcCCCcHHHHHHHHHHHHHHh
Q 009184           73 ENLPVMVAGVW----SND-SGVQYECTTQFRKLLSIERSPPIEEVIRSG-VVPRF-VEFLLREDYPQLQFEAAWALTNIA  145 (541)
Q Consensus        73 ~~l~~l~~~L~----s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g-~i~~L-v~lL~~~~~~~i~~~a~~~L~~l~  145 (541)
                      +.+|.+.+.+.    .+. ...+.+++..+..++...  .|-..+-.++ ++-.+ ..-++.+.+..+|..|+.+|.+=+
T Consensus       129 ~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl  206 (858)
T COG5215         129 SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE--APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSL  206 (858)
T ss_pred             ccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc--CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Confidence            35555555443    333 457888899998887553  3322222222 23333 334555555789999999988722


Q ss_pred             cCChhHHHHHHh----CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHH
Q 009184          146 SGTSEHTKVVID----HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN  221 (541)
Q Consensus       146 ~~~~~~~~~i~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~  221 (541)
                      .   ..+..+..    +-++...+..-+.++.+++..+..||..|..---.+.+..++.-......+.+ ++++.++...
T Consensus       207 ~---fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~q  282 (858)
T COG5215         207 M---FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQ  282 (858)
T ss_pred             H---HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHH
Confidence            1   01111111    12345556666779999999999999988644333444444443333344445 7889999999


Q ss_pred             HHHHHHhhhcCCCCCCh-----------------hhhhchHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHH
Q 009184          222 ATWTLSNFCRGKPQPPF-----------------DQVSPALPALAHLIHSN-------DDEVLTDACWALSYLSDGTNDK  277 (541)
Q Consensus       222 a~~~L~~l~~~~~~~~~-----------------~~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~l~~~~~~~  277 (541)
                      +....+.+|........                 .....++|.|+++|...       |..+...|..||.-.+....+ 
T Consensus       283 avEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-  361 (858)
T COG5215         283 AVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-  361 (858)
T ss_pred             HHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-
Confidence            99999888876421110                 11356899999999642       344555666666554433222 


Q ss_pred             HHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       278 ~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                        .+.+ .++..+-.-+.+++|.-+..|+.++|.+..+..+.....+-...+|.+..++.++ .--++..++|+++.|+.
T Consensus       362 --~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad  437 (858)
T COG5215         362 --KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             --HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHH
Confidence              1222 2555556667889999999999999999999887665556678899999999877 88899999999999987


Q ss_pred             CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh---cCchhHHHHHHHHHHHhccCCCHHH---HHHHHH--cCChHHH
Q 009184          358 GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGGTHEQ---IKFLVI--QGCIKPL  429 (541)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~aL~nl~~~~~~~~---~~~l~~--~~~i~~L  429 (541)
                      +-+..+.           .   .|-++..+....   .+.+.+...++|...|++..-.+..   -..+..  ..++..|
T Consensus       438 ~va~~i~-----------p---~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L  503 (858)
T COG5215         438 HVAMIIS-----------P---CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL  503 (858)
T ss_pred             HHHHhcC-----------c---cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence            5444333           2   122222222221   1467889999999999986421111   111111  0122233


Q ss_pred             hhhcC--CCChHHHHHHHHHHHHHHHhhHhh
Q 009184          430 CDLLV--CPDPRIVTVCLEGLENILKVGEAE  458 (541)
Q Consensus       430 ~~lL~--~~~~~~~~~~l~~L~~l~~~~~~~  458 (541)
                      +.--+  .++...+.....+|..++.+.++.
T Consensus       504 v~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~  534 (858)
T COG5215         504 VKGTELALNESNLRVSLFSALGTLILICPDA  534 (858)
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHhhcchh
Confidence            32211  344566777777887777766553

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3e-08  Score=93.04  Aligned_cols=184  Identities=16%  Similarity=0.193  Sum_probs=153.5

Q ss_pred             cHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184          130 YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (541)
Q Consensus       130 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~  209 (541)
                      +++-+..|+.-|..++. +-++...++..|++..++.++.+++..+|+.|+|+|+.++...|..+..+++.|++..|+..
T Consensus        96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            47888888888888887 57778888899999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChhhHHHHHHHHHHhhhcCCCC-CChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCChHHHHHHHHhCc
Q 009184          210 LNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  286 (541)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~  286 (541)
                      +..+.+..++..|+.+++.+.++.+. .......++...|...+.+  .+...+..++..+.++..........+...++
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            98777888899999999999999843 3444446669999999998  46677888999999998766555555555577


Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184          287 FPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       287 l~~L~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                      ...+..+....+..+.+.++.++..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            6777777777788888888877765554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.4e-06  Score=88.91  Aligned_cols=324  Identities=16%  Similarity=0.163  Sum_probs=237.9

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSP---  191 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~---  191 (541)
                      .|+.|++-+.++.-.+-|..|++.|-.++.   ++|..+... +++.|++.|+.  .++++...++.++.++.....   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            488888888776657889999999999886   566666655 48999999987  679999999999999985442   


Q ss_pred             ---h----------hHHH-HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh---hhhchHHHHHHhhcc
Q 009184          192 ---R----------CRDL-VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD---QVSPALPALAHLIHS  254 (541)
Q Consensus       192 ---~----------~r~~-i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~l~~L~~lL~~  254 (541)
                         .          +.+. +...+.|..++..+ ...|-.++..+...+.++....|..-..   ....++..++.+|..
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               1          1122 23456677777777 7778999999999999999887544322   236688899999998


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC----ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchH
Q 009184          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP----SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (541)
Q Consensus       255 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~  330 (541)
                      ..+.|+-+++..|+.++..++...+.+.=..++.+|..++...    ..-|..-|+..|.|+...+......+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            8888999999999999988887666666668999999999653    235788899999999999888888888999999


Q ss_pred             HHHHhhcCCC--c--------hhH--HHHHHHHHHHHhc-CChH----HH-HHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          331 CLLNLLSGNY--K--------KSI--KKEACWTVSNITA-GNRE----QI-QVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       331 ~L~~lL~~~~--~--------~~v--~~~a~~~L~nl~~-~~~~----~~-~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      .|.++|....  +        .++  ...+..++..+.. +++.    +. +           .+...+++..|+.++.+
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk-----------~l~ss~ll~~Lc~il~~  326 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQK-----------ALVSSHLLDVLCTILMH  326 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-----------HHHHcchHHHHHHHHcC
Confidence            9998875321  1        111  2455566666665 3222    22 3           56688999999999988


Q ss_pred             C--chhHHHHHHHHHHHhccCCCHHHHHHHHHcCC----------hHHHhhhcCCC-ChHHHHHHHHHHHHHHHhhHh
Q 009184          393 A--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGC----------IKPLCDLLVCP-DPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       393 ~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~----------i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~~~~  457 (541)
                      +  ..+|+.+++-++.+.+.+. ......+.+..+          +-.++.+..+. ....+.+++.++..++..+..
T Consensus       327 ~~vp~dIltesiitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~  403 (970)
T KOG0946|consen  327 PGVPADILTESIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD  403 (970)
T ss_pred             CCCcHhHHHHHHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence            6  4789999999999999864 333344443211          12334444443 456788888888887755443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.97  E-value=2.7e-08  Score=96.60  Aligned_cols=232  Identities=18%  Similarity=0.223  Sum_probs=167.2

Q ss_pred             HHHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHh------CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184          246 PALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEA------GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       246 ~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~------g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  317 (541)
                      ..++.+|.  +.+++++.+++..+..+....+...+.+...      .....+++++..+++.+...|+.+++.+....+
T Consensus        58 ~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~  137 (312)
T PF03224_consen   58 SLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP  137 (312)
T ss_dssp             ----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence            33444443  4688999999999999987777666655552      367888889999999999999999999998776


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh----
Q 009184          318 MQTQCVIEYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL----  390 (541)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l----  390 (541)
                      ....... .+.++.++.++.+..   +..++..|+.+|.++.. .+....           .+++.++++.+..++    
T Consensus       138 ~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~-----------~f~~~~~v~~l~~iL~~~~  204 (312)
T PF03224_consen  138 KRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQ-----------VFWKSNGVSPLFDILRKQA  204 (312)
T ss_dssp             T--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHH-----------HHHTHHHHHHHHHHHH---
T ss_pred             ccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHH-----------HHHhcCcHHHHHHHHHhhc
Confidence            5543322 456677777776421   55677899999999986 466666           888999999999999    


Q ss_pred             --hc-CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHHhhHhhhhcCCCCc
Q 009184          391 --EN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTDV  466 (541)
Q Consensus       391 --~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~  466 (541)
                        .. .+..++-+++.++.-++-  +++....+.+.++++.|+++++. ...++++.++.++.|++...++.        
T Consensus       205 ~~~~~~~~Ql~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~--------  274 (312)
T PF03224_consen  205 TNSNSSGIQLQYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS--------  274 (312)
T ss_dssp             ------HHHHHHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT--------
T ss_pred             ccCCCCchhHHHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH--------
Confidence              22 357888999999999987  67888888888999999999875 56789999999999999766432        


Q ss_pred             chhhhHhhhcchHHHHHHHhc--CCCHHHHHHHHHHHH
Q 009184          467 NVFTQMIDDAEGLEKIESLQT--HDNAEIYEKSVKLLE  502 (541)
Q Consensus       467 ~~~~~~i~~~~~~~~l~~L~~--~~~~~i~~~a~~il~  502 (541)
                        +...+-.+|++..+..|+.  -.|+|+.+--..+-+
T Consensus       275 --~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e  310 (312)
T PF03224_consen  275 --NIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLKE  310 (312)
T ss_dssp             --HHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred             --HHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence              4666777999999999974  489999887766654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.94  E-value=7.7e-08  Score=100.36  Aligned_cols=267  Identities=19%  Similarity=0.223  Sum_probs=206.1

Q ss_pred             HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (541)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  166 (541)
                      -..|+.|........+..+.|+.+       +|..++.|-+   .--+..|+..|+.+..-.+-.....+.-|+.|++++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS---QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK  519 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS---QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK  519 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH---HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence            356778888888777777777765       6666666654   456788999999999877888888888999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC--hhhHHHHHHHHHHhhhcCCCCCChhh-hhc
Q 009184          167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLRNATWTLSNFCRGKPQPPFDQ-VSP  243 (541)
Q Consensus       167 lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~  243 (541)
                      +|+++-.+++-..+.+...|-.-++.|+..+++.++-..++..|..++  +++-+..++.+|+.++++.+..+... ..+
T Consensus       520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~  599 (1387)
T KOG1517|consen  520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN  599 (1387)
T ss_pred             HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence            999999999998888888887666778888887777777777774322  45678888999999999875544433 467


Q ss_pred             hHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----Cch
Q 009184          244 ALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDM  318 (541)
Q Consensus       244 ~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~  318 (541)
                      ++..++..|.++ .+-++..+|.+|+.|-.+.++..-.-...+..+.|+.+|.++-+++|..|+.+||.+..+    .++
T Consensus       600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde  679 (1387)
T KOG1517|consen  600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE  679 (1387)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence            788888888775 577899999999999877665444345668899999999999999999999999999875    333


Q ss_pred             hHHHH------------HhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184          319 QTQCV------------IEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (541)
Q Consensus       319 ~~~~~------------~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (541)
                      +...+            ++..+.   -.++.+++.. .+-++.+..-+|+.+..+......
T Consensus       680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~  739 (1387)
T KOG1517|consen  680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLK  739 (1387)
T ss_pred             hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhH
Confidence            33222            222222   2566777777 899999999999999987666654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.92  E-value=5.8e-08  Score=94.31  Aligned_cols=227  Identities=15%  Similarity=0.198  Sum_probs=159.8

Q ss_pred             hHHHHHhhcCC-ChhhHHHHHHHHHHhhhcCCCCCChhhh-------hchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          203 LVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQV-------SPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       203 i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~-------~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      ...++++|... ++.++.++++..+..++...+.......       ......+++++.++|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            44555666555 7899999999999999998764432222       124566777888899999999999999998665


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCC----CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh------cCCCchhH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL------SGNYKKSI  344 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL------~~~~~~~v  344 (541)
                      +....... .+.++.++..+.+    ++..++..|+.+++++.. .+..+..+.+.++++.+..++      .+.....+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            54433222 3566777776644    445677889999999985 566677888999999999999      44446789


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHHc
Q 009184          345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQ  423 (541)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  423 (541)
                      +.+++.++.-++. +++...           .+.+.++++.|+++++.. ..+|.+-++.++.|++..........|+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~-----------~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~  282 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAE-----------ELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLC  282 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHH-----------HHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CHHHHH-----------HHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHc
Confidence            9999999999987 466677           888888999999999874 578999999999999987665578888888


Q ss_pred             CChHHHhhhcC--CCChHHHHH
Q 009184          424 GCIKPLCDLLV--CPDPRIVTV  443 (541)
Q Consensus       424 ~~i~~L~~lL~--~~~~~~~~~  443 (541)
                      |+++.+..+..  ..|+++..-
T Consensus       283 ~~l~~l~~L~~rk~~Dedl~ed  304 (312)
T PF03224_consen  283 GLLKTLQNLSERKWSDEDLTED  304 (312)
T ss_dssp             -HHHHHHHHHSS--SSHHHHHH
T ss_pred             cHHHHHHHHhcCCCCCHHHHHH
Confidence            88877777764  367777654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.92  E-value=3.2e-07  Score=92.55  Aligned_cols=386  Identities=14%  Similarity=0.134  Sum_probs=230.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCc-HHHHHHHHHHHHHHhcCC-hhH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGT-SEH  151 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~-~~i~~~a~~~L~~l~~~~-~~~  151 (541)
                      .+..++.-++++.+..+..++..+.++.+.-....+++-.+.-.+..++.-++.++. ..+......++.+-..+. ..+
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpy  796 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPY  796 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccc
Confidence            456666677777777777777777777654333334444444445555555554431 223333333333322210 011


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH--HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD--LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~--~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  229 (541)
                      .     ..++..++..|.+.++.++.+|+..++.++.--..|.+  .+...|  ..|...| ....+++.-..+.++..+
T Consensus       797 l-----pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEyl-geeypEvLgsILgAikaI  868 (1172)
T KOG0213|consen  797 L-----PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYL-GEEYPEVLGSILGAIKAI  868 (1172)
T ss_pred             h-----HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhc-CcccHHHHHHHHHHHHHH
Confidence            1     12456677788999999999999999998732221211  122222  2345555 677888888888877777


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184          230 CRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (541)
Q Consensus       230 ~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  308 (541)
                      +..- -.....-..+++|.|..+|++....|+.+++..++.++...++....--=..+.--|+.+|+..+..++..|..+
T Consensus       869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT  948 (1172)
T KOG0213|consen  869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT  948 (1172)
T ss_pred             HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6543 122223357899999999999999999999999999998766532211111344457777888888899999999


Q ss_pred             HhHhhcCC--chhHHHHH-----------------------hcCc---hHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-
Q 009184          309 VGNIVTGD--DMQTQCVI-----------------------EYQA---LPCLLNLLSGNYKKSIKKEACWTVSNITAGN-  359 (541)
Q Consensus       309 L~nl~~~~--~~~~~~~~-----------------------~~~~---l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-  359 (541)
                      +|.|+..-  .+....++                       -+|-   +|.|+.=...+ +..|+.-.+.+++.+.... 
T Consensus       949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen  949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred             hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHH
Confidence            99887521  11111110                       1222   33333333334 5566666666666665411 


Q ss_pred             hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC-----
Q 009184          360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV-----  434 (541)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~-----  434 (541)
                      ....+           ++.  -+.|.|-+.|.+.|.--|..|+.++.+++.+..        -.|+.+.++.+|+     
T Consensus      1028 emskd-----------Yiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpN 1086 (1172)
T KOG0213|consen 1028 EMSKD-----------YIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPN 1086 (1172)
T ss_pred             HHhhh-----------HHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhh
Confidence            11111           111  367888888888899999999999999988531        2355666666664     


Q ss_pred             --CCChHHHHHHHHHHHHHHHh-hHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCC
Q 009184          435 --CPDPRIVTVCLEGLENILKV-GEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDD  508 (541)
Q Consensus       435 --~~~~~~~~~~l~~L~~l~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~  508 (541)
                        ...|.++....+++..+-.. ++.                   -.+..+.+=.-|+...|++..-.+++.++-..
T Consensus      1087 Ile~sPhviqa~~e~~eg~r~~Lg~~-------------------~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1087 ILETSPHVIQAFDEAMEGLRVALGPQ-------------------AMLKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred             hcCCChHHHHHHHHHHHHHHHHhchH-------------------HHHHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence              24566666666666655432 211                   11233333356888888888877777765443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=5.9e-07  Score=91.84  Aligned_cols=353  Identities=17%  Similarity=0.173  Sum_probs=240.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ...+.++++....|-+.+.-.-..+.+.+..  .|...    .++++.++.=..+++ |.++..|++.++.+.-+  ...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~--~P~~a----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~--~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKG--KPDLA----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD--KIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhcc--CchHH----HhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh--HHH
Confidence            4678999999998988888888888887765  33322    235777777677777 99999999888877652  232


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..     +...+...+.+.++.+|..+..+..++-..++   +.+...|++..|-.++ .+.++.+..+|+.+|..+...
T Consensus       120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            22     35778899999999999999999998876655   4667888889888888 688999999999999999987


Q ss_pred             CCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       233 ~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      .+. .........+..++..+..-++.-+...+.++.+-...++...+     .++.++...|.+.+..+...+...+.+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            753 33344455555555555444454555555565554433332222     467788889999999999999988888


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchh-----hHHH---------H
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF-----SIIA---------V  377 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~-----~~~~---------l  377 (541)
                      +......... .+-...-+.++.++.+. . +++.-|..-+.-+....+.....-...+-+     -|+.         +
T Consensus       266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            8765554222 22234556677777766 4 666666555555544444432211111111     1111         1


Q ss_pred             Hh-c---CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184          378 IE-A---NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       378 ~~-~---~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      .. .   .++..+......-|.+..+++++|+++++....  .     ..+++..|.++++..-..++..+...++.+++
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e--~-----~~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAE--Q-----SNDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh--h-----hhhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            11 1   144444445555688999999999999987432  2     16899999999998877777778888999998


Q ss_pred             hhHhh
Q 009184          454 VGEAE  458 (541)
Q Consensus       454 ~~~~~  458 (541)
                      +.++.
T Consensus       416 kyP~~  420 (734)
T KOG1061|consen  416 KYPNK  420 (734)
T ss_pred             cCCCc
Confidence            77664

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=2.9e-06  Score=86.89  Aligned_cols=383  Identities=16%  Similarity=0.201  Sum_probs=191.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i  155 (541)
                      ..+.+.|++.+.-++-.|+.+|.++.+.   +-++.     +.|...+++++.+ +-++..|+.|...+....|+....+
T Consensus       110 NslknDL~s~nq~vVglAL~alg~i~s~---Emard-----lapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f  180 (866)
T KOG1062|consen  110 NSLKNDLNSSNQYVVGLALCALGNICSP---EMARD-----LAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF  180 (866)
T ss_pred             HHHHhhccCCCeeehHHHHHHhhccCCH---HHhHH-----hhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh
Confidence            3444455566665666666666666542   22222     3555566666665 6677777666666666555443333


Q ss_pred             --------Hh--CCC----hHHHHHhhCCCC------HHHHHHHHHHHHHhhCCC--hh-----hHHHHHhcCChHHHHH
Q 009184          156 --------ID--HGA----VPIFVKLLYSPS------DDVREQAVWALGNIAGDS--PR-----CRDLVLSQGGLVPLLA  208 (541)
Q Consensus       156 --------~~--~g~----i~~L~~lL~~~~------~~v~~~a~~~L~nl~~~~--~~-----~r~~i~~~g~i~~Ll~  208 (541)
                              .+  .|+    +..+..++....      ..+...-+..|.++....  ++     ..+.+++- -+-.+++
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi-~iLrlLr  259 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI-RILRLLR  259 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH-HHHHHHH
Confidence                    11  222    222333332211      223344444555554221  11     11111111 0222344


Q ss_pred             hhcCCChhhHHHHHHHHHHhhhcCCCCC---Chh-----------------hhhchHHHHHHhhccCChhHHHHHHHHHH
Q 009184          209 QLNGQPKLSMLRNATWTLSNFCRGKPQP---PFD-----------------QVSPALPALAHLIHSNDDEVLTDACWALS  268 (541)
Q Consensus       209 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~-----------------~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  268 (541)
                      +| ...+.+.-.....+|..++++....   -..                 ...-++..|-++|.+.|..++.-++..|.
T Consensus       260 iL-Gq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~  338 (866)
T KOG1062|consen  260 IL-GQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLL  338 (866)
T ss_pred             Hh-cCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHH
Confidence            44 3334444444445555554432111   011                 11223445566666677777777777777


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 009184          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (541)
Q Consensus       269 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  348 (541)
                      .....++...+   ..  =..++.+|++++..++..|+..+-.++..+.  ...     .+..|+..|.+. +++.+...
T Consensus       339 r~V~~d~~avq---rH--r~tIleCL~DpD~SIkrralELs~~lvn~~N--v~~-----mv~eLl~fL~~~-d~~~k~~~  405 (866)
T KOG1062|consen  339 RVVQQDPTAVQ---RH--RSTILECLKDPDVSIKRRALELSYALVNESN--VRV-----MVKELLEFLESS-DEDFKADI  405 (866)
T ss_pred             hhhcCCcHHHH---HH--HHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HHH-----HHHHHHHHHHhc-cHHHHHHH
Confidence            76655543222   11  2457888999999999999999888875443  222     345688888887 88888888


Q ss_pred             HHHHHHHhcC-ChH---HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-------------------------chhHHH
Q 009184          349 CWTVSNITAG-NRE---QIQVIMHVHAFSIIAVIEANIIGPLVALLENA-------------------------EFDIKK  399 (541)
Q Consensus       349 ~~~L~nl~~~-~~~---~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-------------------------~~~v~~  399 (541)
                      +.-+..++.. .++   .++..+.... ....++...++..+++++.+.                         ...+..
T Consensus       406 as~I~~laEkfaP~k~W~idtml~Vl~-~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~q  484 (866)
T KOG1062|consen  406 ASKIAELAEKFAPDKRWHIDTMLKVLK-TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQ  484 (866)
T ss_pred             HHHHHHHHHhcCCcchhHHHHHHHHHH-hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence            8777777762 121   2221111100 001122233444444444332                         234566


Q ss_pred             HHHHHHHHhc----cCCCHHHHHHHHHcCChHHHhhhcCCC--ChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHh
Q 009184          400 EAAWAISNAT----SGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI  473 (541)
Q Consensus       400 ~a~~aL~nl~----~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i  473 (541)
                      -|.|+|+...    .++..+.-...-+..++..|..++.+.  +..+...++.++.+|.......       .+.+    
T Consensus       485 Va~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-------~~ri----  553 (866)
T KOG1062|consen  485 VASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-------SERI----  553 (866)
T ss_pred             HHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-------HHHH----
Confidence            6778877543    111111111112345677787877653  4556666666666655322211       1111    


Q ss_pred             hhcchHHHHHHHhcCCCHHHHHHHHH
Q 009184          474 DDAEGLEKIESLQTHDNAEIYEKSVK  499 (541)
Q Consensus       474 ~~~~~~~~l~~L~~~~~~~i~~~a~~  499 (541)
                           -+.|.....+-+.+++.+|.+
T Consensus       554 -----~~lI~~~~~s~~~elQQRa~E  574 (866)
T KOG1062|consen  554 -----KQLISSYKSSLDTELQQRAVE  574 (866)
T ss_pred             -----HHHHHHhcccccHHHHHHHHH
Confidence                 134455566777777777644

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.82  E-value=1.3e-06  Score=85.89  Aligned_cols=354  Identities=14%  Similarity=0.120  Sum_probs=216.7

Q ss_pred             CCHHHHHHhhcC-------CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 009184           73 ENLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIA  145 (541)
Q Consensus        73 ~~l~~l~~~L~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~  145 (541)
                      +.+|.++++|..       +|+..-..|..+|.-+....    .+.+.+. ++...=+-+.+++ +.-++.|+.+++.+.
T Consensus       321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~----gd~i~~p-Vl~FvEqni~~~~-w~nreaavmAfGSvm  394 (858)
T COG5215         321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK----GDKIMRP-VLGFVEQNIRSES-WANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh----hhHhHHH-HHHHHHHhccCch-hhhHHHHHHHhhhhh
Confidence            468999998875       23455566666665444321    1222222 3333344566776 889999999999999


Q ss_pred             cCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh--cCCChhhHHHHHH
Q 009184          146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL--NGQPKLSMLRNAT  223 (541)
Q Consensus       146 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l--~~~~~~~~~~~a~  223 (541)
                      .+..+....-+-..++|.+...+.++..-+++.++|+++.|+.+-+.   .+-..|-++..+...  .-...+.+..+++
T Consensus       395 ~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs  471 (858)
T COG5215         395 HGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCS  471 (858)
T ss_pred             cCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhH
Confidence            87655554444457899999999888888999999999999865432   333333333333322  1234567788999


Q ss_pred             HHHHhhhcCCCCCC---hhhhhchHH----HHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009184          224 WTLSNFCRGKPQPP---FDQVSPALP----ALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (541)
Q Consensus       224 ~~L~~l~~~~~~~~---~~~~~~~l~----~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL  294 (541)
                      |..-||..+-+...   ........+    .|++...  -++...+..+..+|+.+....++....+. .|+.....+-|
T Consensus       472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~-a~~~~~~~~kl  550 (858)
T COG5215         472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL-AGFYDYTSKKL  550 (858)
T ss_pred             HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHH
Confidence            99999988763322   222233333    3333322  23556778888888877655443322211 13333322222


Q ss_pred             -----------CCCC----hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184          295 -----------MHPS----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (541)
Q Consensus       295 -----------~~~~----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (541)
                                 ...+    .+++..-+..|..+........+.+ ...++..++++|++.....+-.....++++++..-
T Consensus       551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl  629 (858)
T COG5215         551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-EDQLMELFIRILESTKPTTAFGDVYTAISALSTSL  629 (858)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence                       1122    3456666666666665444322222 23467788889988733456678888999998744


Q ss_pred             hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC--
Q 009184          360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--  437 (541)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~--  437 (541)
                      .+...            ..-..++|.|.+.|...+..+...|+..++.++..-..+...  .....+..|+++|+++.  
T Consensus       630 ~e~Fe------------~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~--y~d~~ms~LvQ~lss~~~~  695 (858)
T COG5215         630 EERFE------------QYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNI--YADVLMSSLVQCLSSEATH  695 (858)
T ss_pred             HHHHH------------HHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcChhhc
Confidence            44443            223479999999998889999999999999987643333322  23456788999998754  


Q ss_pred             hHHHHHHHHHHHHH
Q 009184          438 PRIVTVCLEGLENI  451 (541)
Q Consensus       438 ~~~~~~~l~~L~~l  451 (541)
                      .++.-.+|..+.-|
T Consensus       696 R~lKPaiLSvFgDI  709 (858)
T COG5215         696 RDLKPAILSVFGDI  709 (858)
T ss_pred             cccchHHHHHHHHH
Confidence            33444444444444

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.6e-05  Score=83.46  Aligned_cols=329  Identities=16%  Similarity=0.178  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHHHHHccCCCCcHHHHH-----hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184           88 GVQYECTTQFRKLLSIERSPPIEEVI-----RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (541)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~i-----~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (541)
                      +-...++.+|+++++.  +|....+.     --|.++.+..+|....+++++..|+.++..++. +.++...+...|.+.
T Consensus      1740 ~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLT 1816 (2235)
T ss_pred             HHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHH
Confidence            3456789999999976  55433332     246788888888776668999999999988877 788999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCC--Chh
Q 009184          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP--PFD  239 (541)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~--~~~  239 (541)
                      .|+.+|.+. +..|+.++..|..+++... .....++.|++..++.++..+.++..+..++..+..+..++ ..+  ...
T Consensus      1817 ~LL~lLHS~-PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1817 TLLTLLHSQ-PSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred             HHHHHHhcC-hHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence            999999763 6788999999999987665 66677889999999999988889999999999999998776 222  221


Q ss_pred             hh-----------hchHHHHHHhhcc--CChhH------HHHHHHHHHHhcc--------CC------hHH---------
Q 009184          240 QV-----------SPALPALAHLIHS--NDDEV------LTDACWALSYLSD--------GT------NDK---------  277 (541)
Q Consensus       240 ~~-----------~~~l~~L~~lL~~--~d~~v------~~~a~~~L~~l~~--------~~------~~~---------  277 (541)
                      .+           .+.-.+.++++..  +++++      +...-..+..+..        ++      ++.         
T Consensus      1895 L~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred             hHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence            11           1112344555542  23332      1111112222211        00      000         


Q ss_pred             ---------HHH------------HHHhCcHHHHHHhhCCCChh--hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHH
Q 009184          278 ---------IQA------------VIEAGVFPRLAEFLMHPSPS--VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN  334 (541)
Q Consensus       278 ---------~~~------------~~~~g~l~~L~~lL~~~~~~--v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~  334 (541)
                               ...            ..-.++++.+.++|..+++.  ...-...++..+....+...+.+-.-|.+|.++.
T Consensus      1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred             CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence                     000            01114556666666544332  2222333444455556666666667799999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCH
Q 009184          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  414 (541)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  414 (541)
                      .+... +..+-+.|..+|..++.. .-..+           .+.....+..++..++.. +...--|+.+|..+......
T Consensus      2055 Am~~~-n~s~P~SaiRVlH~Lsen-~~C~~-----------AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~ 2120 (2235)
T KOG1789|consen 2055 AMCLQ-NTSAPRSAIRVLHELSEN-QFCCD-----------AMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTG 2120 (2235)
T ss_pred             HHHhc-CCcCcHHHHHHHHHHhhc-cHHHH-----------HHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHH
Confidence            99877 666778899999999873 44455           666656666677766543 35555888888888876566


Q ss_pred             HHHHHHHHcCChHHHhhhcCC
Q 009184          415 EQIKFLVIQGCIKPLCDLLVC  435 (541)
Q Consensus       415 ~~~~~l~~~~~i~~L~~lL~~  435 (541)
                      +........|.++.|..+|++
T Consensus      2121 eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2121 ELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             HHHHHHhccCcHHHHHHHhcc
Confidence            666667788999999999975

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=2.5e-07  Score=94.46  Aligned_cols=222  Identities=18%  Similarity=0.166  Sum_probs=129.5

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..++.++....+.+|.++..|++....+   . .+.+.    ..+...+...+++.+ +-++..|+.+..++-..+   .
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l---~-v~~i~----ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~  153 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCL---R-VDKIT----EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P  153 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeE---e-ehHHH----HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence            3455555555566777776666654432   1 11111    124677888888888 999999999999887654   3


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      +.+.+.|.++.|-.++.++++.+...|+.+|..|....+..-...+....+..++..+    +.-.-..-+.++-.++..
T Consensus       154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~y  229 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAEY  229 (734)
T ss_pred             hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHhc
Confidence            4566789999999999999999999999999999866553111111222233344333    222223334445555555


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                      .|... .-...++..+...|.+.+..+...+...+.++...-... ...+-..+-+.++.++.... .+..-|++-+.-+
T Consensus       230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li  306 (734)
T KOG1061|consen  230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLI  306 (734)
T ss_pred             CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence            44433 333455556666666666666666666666555433321 11222244455555555544 4444454444444


Q ss_pred             h
Q 009184          313 V  313 (541)
Q Consensus       313 ~  313 (541)
                      .
T Consensus       307 l  307 (734)
T KOG1061|consen  307 L  307 (734)
T ss_pred             H
Confidence            3

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=3.3e-05  Score=79.39  Aligned_cols=371  Identities=16%  Similarity=0.161  Sum_probs=205.5

Q ss_pred             CCCchHHhhhhhhHHHHHHHHhhH--HHHHhhh-hccc---cCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCHHHHHH
Q 009184           19 AVDADEGRRRREDNMVEIRKNKRE--ESLQKKR-REGL---QNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYE   92 (541)
Q Consensus        19 ~~~~~~~r~~r~~~~~~lRk~~r~--~~l~~~R-~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~~~~~~   92 (541)
                      ..+..|.|+-=......||+.-|+  .-..+|| ++.-   -+-.+.|.         -++.+ .-++++.|++-..+.-
T Consensus        20 akT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypa---------hFGqi-eclKLias~~f~dKRi   89 (866)
T KOG1062|consen   20 AKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPA---------HFGQI-ECLKLIASDNFLDKRI   89 (866)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCc---------cchhh-HHHHHhcCCCchHHHH
Confidence            345556666555556677877776  3333333 2210   00000110         12222 3345556655443333


Q ss_pred             HHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCC
Q 009184           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS  172 (541)
Q Consensus        93 a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~  172 (541)
                      +--...-++. ++.+ ...+    +...+.+=|++++ .-+.-.|+.+|++|++  +|....     ..|-+.+++++.+
T Consensus        90 GYLaamLlLd-E~qd-vllL----ltNslknDL~s~n-q~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~  155 (866)
T KOG1062|consen   90 GYLAAMLLLD-ERQD-LLLL----LTNSLKNDLNSSN-QYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRD  155 (866)
T ss_pred             HHHHHHHHhc-cchH-HHHH----HHHHHHhhccCCC-eeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCC
Confidence            3333333332 2122 2221    2344555566777 7788889999999987  555443     3577888999999


Q ss_pred             HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh
Q 009184          173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI  252 (541)
Q Consensus       173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL  252 (541)
                      +.+|..|+.|...+....|...+.     ++++..++| .+.+..+....+..+..+|...+. .......+++-++..|
T Consensus       156 ~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~-~l~~fr~l~~~lV~iL  228 (866)
T KOG1062|consen  156 PYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLL-CEKHHGVLIAGLHLITELCKISPD-ALSYFRDLVPSLVKIL  228 (866)
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHH
Confidence            999999999999998777754333     566666777 555677777777777777776432 2223344555555555


Q ss_pred             c---------------cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHHHHhHhhc
Q 009184          253 H---------------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---SPSVLIPALRTVGNIVT  314 (541)
Q Consensus       253 ~---------------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~---~~~v~~~al~~L~nl~~  314 (541)
                      +               -+||-++..+++.|.-+..++.+..+.+.+  ++..+..--.+.   -..+..+++++|..|-.
T Consensus       229 k~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~GnAILYE~V~TI~~I~~  306 (866)
T KOG1062|consen  229 KQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGNAILYECVRTIMDIRS  306 (866)
T ss_pred             HHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHHHhccC
Confidence            3               135667777777777777665544443322  222222211111   12355555555554443


Q ss_pred             CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc
Q 009184          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE  394 (541)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~  394 (541)
                      ...-.   +   -++..|-+.|.+. +..+|.-|+.+|......++...+           .     ==..+++.|+++|
T Consensus       307 ~~~Lr---v---lainiLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avq-----------r-----Hr~tIleCL~DpD  363 (866)
T KOG1062|consen  307 NSGLR---V---LAINILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQ-----------R-----HRSTILECLKDPD  363 (866)
T ss_pred             CchHH---H---HHHHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHH-----------H-----HHHHHHHHhcCCc
Confidence            22211   1   1344555666666 666666666666666654444333           1     1134666777778


Q ss_pred             hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184          395 FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       395 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      ..+|+.|+..+..++...+..   .     +++.|+.+|...++++...+...+..+.+
T Consensus       364 ~SIkrralELs~~lvn~~Nv~---~-----mv~eLl~fL~~~d~~~k~~~as~I~~laE  414 (866)
T KOG1062|consen  364 VSIKRRALELSYALVNESNVR---V-----MVKELLEFLESSDEDFKADIASKIAELAE  414 (866)
T ss_pred             HHHHHHHHHHHHHHhccccHH---H-----HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            888888887777776643322   1     34566666666666666555554444443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=6.9e-06  Score=83.49  Aligned_cols=320  Identities=16%  Similarity=0.121  Sum_probs=158.3

Q ss_pred             hcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChH
Q 009184          125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLV  204 (541)
Q Consensus       125 L~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~  204 (541)
                      |++++ +-+|-..++.|+.+-.  ++...     ..+|.+...|.+.+.-+|..|..++..|.....    .++ -.+-+
T Consensus       108 LQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~----~L~-pDape  174 (948)
T KOG1058|consen  108 LQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE----HLI-PDAPE  174 (948)
T ss_pred             ccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh----hhc-CChHH
Confidence            34454 5566666666655433  33322     457888888888999999999999888864321    111 12334


Q ss_pred             HHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh---ccCChhHHHHHHHHHHHhccCChHHHHHH
Q 009184          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALSYLSDGTNDKIQAV  281 (541)
Q Consensus       205 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL---~~~d~~v~~~a~~~L~~l~~~~~~~~~~~  281 (541)
                      .+-..|....|+...++|.-.|...-..          .++..+...+   .+-++..+.-....+...+...+..    
T Consensus       175 Li~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~----  240 (948)
T KOG1058|consen  175 LIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE----  240 (948)
T ss_pred             HHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH----
Confidence            4445555677888888877665543221          1112221111   1112333333333333333322221    


Q ss_pred             HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (541)
Q Consensus       282 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (541)
                       +...+..++.+|.+.++.++-.|..+|.+++....... .     ....++.++....+..++.-...-|..+......
T Consensus       241 -~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk-~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~  313 (948)
T KOG1058|consen  241 -KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK-A-----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK  313 (948)
T ss_pred             -hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH-H-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH
Confidence             12345555666655555555555555555543222111 0     1122333333222333333333333333322222


Q ss_pred             HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHH---------------------
Q 009184          362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL---------------------  420 (541)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l---------------------  420 (541)
                      ..+                |.+--+++.|+++|.+++..++.....++...+.+.+..+                     
T Consensus       314 il~----------------~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRq  377 (948)
T KOG1058|consen  314 ILQ----------------GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQ  377 (948)
T ss_pred             HHH----------------HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHH
Confidence            221                2223333444444444444444433333332221111110                     


Q ss_pred             ---------------HHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH
Q 009184          421 ---------------VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL  485 (541)
Q Consensus       421 ---------------~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L  485 (541)
                                     +...+++.|++.+.+.++.....++..++..++..++.+          ...++     ..++.+
T Consensus       378 lLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----------~~ii~-----~l~~~~  442 (948)
T KOG1058|consen  378 LLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----------ASIIE-----KLLETF  442 (948)
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----------HHHHH-----HHHHhh
Confidence                           223467788888888887777777777777776665532          11121     223334


Q ss_pred             hcCCCHHHHHHHHHHHHHhCCCCC
Q 009184          486 QTHDNAEIYEKSVKLLETYWLDDE  509 (541)
Q Consensus       486 ~~~~~~~i~~~a~~il~~~~~~~~  509 (541)
                      -.-...+++.-|.||+.+|...+.
T Consensus       443 ~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  443 PQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             hhhcccccchhHHHHHHHHHhhhH
Confidence            445677888999999999988766

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=1.7e-05  Score=79.62  Aligned_cols=339  Identities=16%  Similarity=0.124  Sum_probs=215.3

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (541)
                      ++..|..-+..+. +.+|.....||.-+.........    ....+.+.+++......-+..+.+.++.+..+...  ..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--ES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--hh
Confidence            5778888888888 99999999888877652211111    12457778888888888888899999988866542  34


Q ss_pred             HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-Ch
Q 009184          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TN  275 (541)
Q Consensus       197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~  275 (541)
                      +.+.+++..+...+....+..-++.++.+.-..+..-...........+|.++....+..+.++..+..+...+... +.
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            45667788888888333333333334444444443332222334456667776666677788888777766554432 11


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (541)
Q Consensus       276 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (541)
                      ....     -+++.++.-+....|.....++..+|.++...+.+... .-..++|.+...|.+. ++++|+.+..++.++
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            1111     23444544444458899999999999999888777644 3468999999999999 999999999999999


Q ss_pred             hc--CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHhh
Q 009184          356 TA--GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG--THEQIKFLVIQGCIKPLCD  431 (541)
Q Consensus       356 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~  431 (541)
                      +.  .+++ ++                .++|.|++.+.++...+. ++...|+.-....  ++..+..     +++.|.+
T Consensus       323 ~svidN~d-I~----------------~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R  379 (569)
T KOG1242|consen  323 GSVIDNPD-IQ----------------KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKR  379 (569)
T ss_pred             HHhhccHH-HH----------------HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHH
Confidence            88  4454 44                378899998876653332 3333333221111  1111111     2334444


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 009184          432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE  502 (541)
Q Consensus       432 lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~  502 (541)
                      -+...+..+...+..++.|+...-+..+.     ..+|...+     +..++.......|+++..+...+.
T Consensus       380 ~l~eRst~~kr~t~~IidNm~~LveDp~~-----lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~  440 (569)
T KOG1242|consen  380 GLAERSTSIKRKTAIIIDNMCKLVEDPKD-----LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALG  440 (569)
T ss_pred             HHhhccchhhhhHHHHHHHHHHhhcCHHH-----HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHH
Confidence            44555667778888899999887644332     23333333     345555555668999988877663

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.72  E-value=5.2e-06  Score=84.14  Aligned_cols=259  Identities=15%  Similarity=0.128  Sum_probs=164.3

Q ss_pred             HHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh-HHHHHHH
Q 009184          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVI  282 (541)
Q Consensus       205 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~  282 (541)
                      .++..| +++++.++..++..++.++.--... .......+=-.|...|...+++++-..+.++..+..... .....-+
T Consensus       803 tiL~rL-nnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi  881 (1172)
T KOG0213|consen  803 TILWRL-NNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI  881 (1172)
T ss_pred             HHHHHh-cCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence            334444 6677888888888887776432111 122223333456677778889998888888777653211 0000011


Q ss_pred             HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChH
Q 009184          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NRE  361 (541)
Q Consensus       283 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  361 (541)
                       .+++|.|..+|++.+..++..++..+|.|+...++....--=..+.--|+.+|... +..+|..|..+++.|+.. .+.
T Consensus       882 -~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~IakaIGPq  959 (1172)
T KOG0213|consen  882 -KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAKAIGPQ  959 (1172)
T ss_pred             -hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHhcCHH
Confidence             28999999999999999999999999999987765431100001223477778777 889999999999999872 121


Q ss_pred             HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHH
Q 009184          362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV  441 (541)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  441 (541)
                                         .++..|++-|+..+..-|.....++.-.+..+.+        ..+++.|+.--..++..++
T Consensus       960 -------------------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p--------FtVLPalmneYrtPe~nVQ 1012 (1172)
T KOG0213|consen  960 -------------------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP--------FTVLPALMNEYRTPEANVQ 1012 (1172)
T ss_pred             -------------------HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc--------hhhhHHHHhhccCchhHHH
Confidence                               2445666666665544444333344433332222        2367777777778888899


Q ss_pred             HHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184          442 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       442 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~  505 (541)
                      .-+|+++..++.+-.+..+       .|.-.+     ...|++-....+.--+..|..+|.++-
T Consensus      1013 nGVLkalsf~Feyigemsk-------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1013 NGVLKALSFMFEYIGEMSK-------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             HhHHHHHHHHHHHHHHHhh-------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHHHHh
Confidence            9999999999986544322       133222     345666666677777777777777654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=0.00013  Score=67.47  Aligned_cols=351  Identities=15%  Similarity=0.127  Sum_probs=229.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc---HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP---IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~---~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      .|.+-..|..+|..++..++..+..++...+...   +..+++.++++.++.++..++ .++...|...+..|+. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence            4555566777888899999999988886532222   455668999999999999988 8999999999999998 6777


Q ss_pred             HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184          152 TKVVIDHGAVPIFV--KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       152 ~~~i~~~g~i~~L~--~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  229 (541)
                      ...+++......+-  .+.-.-+.-.|..++..+..|.+-++.....+..+|.+..|..-|....|.-++.+++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            88888777665442  2222344556667788888888888888888889999999999896668888899999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCChH---HHHHHHHh--CcHHHHHHhhCCCChhhH
Q 009184          230 CRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTND---KIQAVIEA--GVFPRLAEFLMHPSPSVL  302 (541)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~---~~~~~~~~--g~l~~L~~lL~~~~~~v~  302 (541)
                      ........+....++++.+..++.-.  ++--...++.....+.....-   .-+.+++.  -.++.....+...++...
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            98777777777788999988888633  443334344444433311100   01112221  234445556677888999


Q ss_pred             HHHHHHHhHhhcCCchhHHHHHhcCc--hHH-HHHhhcCCCchhHHHHHHHHHHHHhc---CChHHHHHHHhhchhh---
Q 009184          303 IPALRTVGNIVTGDDMQTQCVIEYQA--LPC-LLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFS---  373 (541)
Q Consensus       303 ~~al~~L~nl~~~~~~~~~~~~~~~~--l~~-L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~---  373 (541)
                      ..|+.++|.+.+... ..+.+...|-  ... +.+....+ ...-+..+..+|.+|+.   -.++++..=.+.+..+   
T Consensus       322 eaAiDalGilGSnte-GadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli  399 (524)
T KOG4413|consen  322 EAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI  399 (524)
T ss_pred             HHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence            999999999887544 3334444432  222 33333333 33345667788888876   2333322000000000   


Q ss_pred             HHHHHh---cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHH-HcCChHHHhh
Q 009184          374 IIAVIE---ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV-IQGCIKPLCD  431 (541)
Q Consensus       374 ~~~l~~---~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~~i~~L~~  431 (541)
                      |....+   ..-+..+..+++.+.++++..+...+..++.  .|-..+.+. ..++++...+
T Consensus       400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa--qPWalkeifakeefieiVtD  459 (524)
T KOG4413|consen  400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA--QPWALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc--CcHHHHHHhcCccceeeecc
Confidence            001111   1345556667777889999999999999987  344444444 4566655544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=1.4e-06  Score=85.74  Aligned_cols=321  Identities=17%  Similarity=0.087  Sum_probs=200.6

Q ss_pred             HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009184          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (541)
Q Consensus       113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  192 (541)
                      .-.+++++.+..+.+++ ..++..|+..+.|++..-. ......-..+...+.++...++..++. ++..+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~k-~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVAK-GEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHhc-cCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            34678999999999988 8999999999999987311 111111123445666666666666654 44444444322211


Q ss_pred             hHH-HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184          193 CRD-LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (541)
Q Consensus       193 ~r~-~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  271 (541)
                      -++ .+--.++++.|-..+ ...++..+...+.-|..|-...+..-......+++.|..+|..+.++|+.-+=.+++...
T Consensus       158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            111 111112333333344 456777777777666666544333333445778899999999999998866666555543


Q ss_pred             ---cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCch-hHHHH
Q 009184          272 ---DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKE  347 (541)
Q Consensus       272 ---~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~  347 (541)
                         ..++..   +--...++.++.-+.++++.++..|+.-|..++.-.+... ...-+|++..+++++.+. .+ .++..
T Consensus       237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~  311 (675)
T KOG0212|consen  237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEY  311 (675)
T ss_pred             HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHH
Confidence               122221   1112577888888999999999999888888876554433 334568888899999887 44 35444


Q ss_pred             HHHHHHHHhc-CChH-HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHH-HcC
Q 009184          348 ACWTVSNITA-GNRE-QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV-IQG  424 (541)
Q Consensus       348 a~~~L~nl~~-~~~~-~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~-~~~  424 (541)
                      +...-+.+.. .+.+ ..+           .+--..+++.+...++++..+.|..++.-+..+-.... .+  .++ ...
T Consensus       312 a~~~n~~l~~l~s~~~~~~-----------~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~q--l~~h~~~  377 (675)
T KOG0212|consen  312 AQMVNGLLLKLVSSERLKE-----------EIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQ--LLVHNDS  377 (675)
T ss_pred             HHHHHHHHHHHHhhhhhcc-----------ccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-ch--hhhhccH
Confidence            4333222322 1111 111           11112467788888888889999998888877766432 22  222 346


Q ss_pred             ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184          425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~  456 (541)
                      +...|..-|.+.+..++..+|..+.++....+
T Consensus       378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  378 IFLTLLKTLSDRSDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             HHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence            78888888998999999999999998886543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.68  E-value=1.7e-06  Score=83.19  Aligned_cols=271  Identities=17%  Similarity=0.173  Sum_probs=184.5

Q ss_pred             HHHHHhcCCHHHHHHhhcCCCc-HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHh
Q 009184          109 IEEVIRSGVVPRFVEFLLREDY-PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNI  186 (541)
Q Consensus       109 ~~~~i~~g~i~~Lv~lL~~~~~-~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl  186 (541)
                      .+.+...|.+..|+.++..++. ..++.+|+..|-.+..  .++++.+...| +..++.+.+. ..++.....+..|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3455567889999999999872 3569999999999887  78888888876 5555555544 6688999999999999


Q ss_pred             hCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCC-ChhhhhchHHHHHHhhccCChhHHHHHH
Q 009184          187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP-PFDQVSPALPALAHLIHSNDDEVLTDAC  264 (541)
Q Consensus       187 ~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~  264 (541)
                      ..++.+....++..|++..++-.. +..++.+.+.++.+|.|++-+. ... ..+....+-.-|..+-.+.|+-.+..+|
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988888889999999988888 6678999999999999998765 222 2223344445566666677788899999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhH
Q 009184          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (541)
Q Consensus       265 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  344 (541)
                      .+++-++.+.+ ....+.++|.+..+-.++..-++.....   --...+.+.        ....++.|+.+|++. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            99999986654 3344666777776666666555422111   000111111        124577899999877 5666


Q ss_pred             HHHHHHHHHHHhcCCh--HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHH
Q 009184          345 KKEACWTVSNITAGNR--EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISN  407 (541)
Q Consensus       345 ~~~a~~~L~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~n  407 (541)
                      +.-+++-++.=+.-..  ...+           .+-+-|.+..|-++.++++.--.+-|-.+|.-
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~k-----------VFseIGAIQaLKevaSS~d~vaakfAseALtv  449 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTK-----------VFSEIGAIQALKEVASSPDEVAAKFASEALTV  449 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchh-----------HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            6555555544333111  1122           34467899999999887764333334444443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.66  E-value=1.4e-06  Score=91.23  Aligned_cols=248  Identities=16%  Similarity=0.197  Sum_probs=193.1

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +++|.+++.|-|  .--++.|+..|.+++..+ ...+..-..-|++|-.+++|+++. .+++---+.+-+.|..-++.+.
T Consensus       472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence            467777777665  456788999999999765 677888888999999999999998 9999999999999988788888


Q ss_pred             HHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184          153 KVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  229 (541)
                      ..+++.++-.++++.|..   -+++-+..|+..|+.|+..-+-.+..+++.+.+...+..|..+..+-+++-++-+|..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            888887778888888876   24688999999999999887767778888888998999995545677888889999999


Q ss_pred             hcCCCCCChhh-hhchHHHHHHhhccCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHhCcH---HH
Q 009184          230 CRGKPQPPFDQ-VSPALPALAHLIHSNDDEVLTDACWALSYLSDG----TNDKIQAV------------IEAGVF---PR  289 (541)
Q Consensus       230 ~~~~~~~~~~~-~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----~~~~~~~~------------~~~g~l---~~  289 (541)
                      -.+.+...... ...+...|..+|..+-++|+..|..+|+.+..+    .+++...+            ++.-+.   -.
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            88875444443 467788899999999999999999999988764    23222211            221111   24


Q ss_pred             HHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHH
Q 009184          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVI  324 (541)
Q Consensus       290 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~  324 (541)
                      ++.+++...+-++.+..-++..++.+...+...+.
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            55666778888888888888888887766654443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.66  E-value=1e-05  Score=84.19  Aligned_cols=351  Identities=13%  Similarity=0.107  Sum_probs=211.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI  156 (541)
Q Consensus        77 ~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~  156 (541)
                      .+++.+.+.|.+.|+.|+.-|.+-+... .-..+.=-...++..++++|.+.+ .++|..|+.|++-+++.-++.+-.  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le--   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE--   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence            7888899999999999999988777543 222222123457889999999988 999999999999999754444322  


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC----hHHHHHhhcCCCh-hhHHHHHHHHHHhhhc
Q 009184          157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG----LVPLLAQLNGQPK-LSMLRNATWTLSNFCR  231 (541)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~----i~~Ll~~l~~~~~-~~~~~~a~~~L~~l~~  231 (541)
                        ..+..|+.-+-+.....+..+..+|......-++.....+...+    .+.+...+....+ ..++-.++..+..+..
T Consensus        85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence              12455555544444555555544444333332222222222223    3444444433333 3366666666665544


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHh
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVG  310 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~  310 (541)
                      .....-...-..++..++.-+.++-..|+..++.+|+.++...+..   +. .+++..|.+-|..+ .......-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            3322212244566677777788888889999999999998554431   11 25667777777543 3444445566677


Q ss_pred             HhhcCCchhHHHHHhcCchHHHHHhh---cCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          311 NIVTGDDMQTQCVIEYQALPCLLNLL---SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       311 nl~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      .++.........- -..+++.+.+..   ... +.++|+.+..++..+....+..+.           ..+. .++..++
T Consensus       239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~-----------p~~p-ei~~l~l  304 (1233)
T KOG1824|consen  239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEIL-----------PHVP-EIINLCL  304 (1233)
T ss_pred             HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhc-----------ccch-HHHHHHH
Confidence            7665333221111 135677788887   555 789999999999988876565443           1111 1222222


Q ss_pred             HHhh-------------------------------cC---chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184          388 ALLE-------------------------------NA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  433 (541)
Q Consensus       388 ~~l~-------------------------------~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL  433 (541)
                      +.+.                               ++   .+.||++|+.++..++.. ..+....+.+ .+-+.+++=+
T Consensus       305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~Rf  382 (1233)
T KOG1824|consen  305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRF  382 (1233)
T ss_pred             HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHH
Confidence            2221                               11   267999999999999874 4444444333 3456677777


Q ss_pred             CCCChHHHHHHHHHHHHHHH
Q 009184          434 VCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       434 ~~~~~~~~~~~l~~L~~l~~  453 (541)
                      +.....+..-+..++..+++
T Consensus       383 kEREEnVk~dvf~~yi~ll~  402 (1233)
T KOG1824|consen  383 KEREENVKADVFHAYIALLK  402 (1233)
T ss_pred             HHHhhhHHHHHHHHHHHHHH
Confidence            76666777777777766665

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=3.5e-05  Score=78.17  Aligned_cols=255  Identities=17%  Similarity=0.176  Sum_probs=177.5

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (541)
                      +-+-++.+|+++. |-++..|+.++..+....|+...     ..+|.|..-|..+++.++..|...++.+|+..|..  .
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence            4456677888888 89999999999988876665543     24688999999999999999999999999887752  1


Q ss_pred             HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCC-hhHHHHHHHHHH--HhccC
Q 009184          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALS--YLSDG  273 (541)
Q Consensus       197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~--~l~~~  273 (541)
                       +  ..-|.+.++|..+.+.=+....+..+.+|+--.|    ..-..+++.|..++.+.. ..+...|..++.  +++.+
T Consensus       217 -L--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 -L--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             -c--cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence             1  2456677777566666566666777777765443    234667888888888764 557777777663  33433


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (541)
Q Consensus       274 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (541)
                      .++... .+. -.+..|--++.+.++.++.-++.+++.+....+...+.-     -+.++++|.+. |+.+|..|+..|.
T Consensus       290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence            211111 111 235667778888999999999999999988776554332     45788999998 9999999999999


Q ss_pred             HHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc-hhHHHHHHHHHHHhccCC
Q 009184          354 NITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGG  412 (541)
Q Consensus       354 nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~aL~nl~~~~  412 (541)
                      -+..  .+.+.                .++..|+..+...+ ...|.+.+.-+..++...
T Consensus       362 gmVs--kkNl~----------------eIVk~LM~~~~~ae~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  362 GMVS--KKNLM----------------EIVKTLMKHVEKAEGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             HHhh--hhhHH----------------HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence            8875  33333                24455555554433 477777777776666544

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=6.1e-07  Score=87.57  Aligned_cols=307  Identities=14%  Similarity=0.106  Sum_probs=196.3

Q ss_pred             HHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccC
Q 009184          177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN  255 (541)
Q Consensus       177 ~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~  255 (541)
                      ..++.+|-.+++.-...|.-+.+..+.++|+++| ..++..+.-.++..++|+.-.. +-.......+++..|++++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            3444555566666666777888888899999999 6666666677777888877655 4445566789999999999999


Q ss_pred             ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch---hHHHHHhc----C
Q 009184          256 DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---QTQCVIEY----Q  327 (541)
Q Consensus       256 d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~~~~~----~  327 (541)
                      |..++....|.+.++..+++...+ ..+..-++..++.+..++++.++..++.++.|+.+....   ..+..+..    -
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            999999999999999877654422 245556789999999999999999999999999984432   22222211    2


Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHHHHHHhhcC-----------ch
Q 009184          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGPLVALLENA-----------EF  395 (541)
Q Consensus       328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~-----------~~  395 (541)
                      ....|+..+... +|-.-.+.|+.|.++++.+....+           .+. +..++..+.++|...           ..
T Consensus       566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~-----------~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~  633 (743)
T COG5369         566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDY-----------IVQSQEDMLDSIFEILDEFAGRTPLSPGSKEE  633 (743)
T ss_pred             HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHH-----------HHHhHHHHHHHHHHHHHHHcccCCCCCCCCcc
Confidence            456777888877 776777789999999986554443           222 334555454444321           11


Q ss_pred             hHHHHHHHHHHHhccCCCHHHHHHHHHcCCh--HHHhhhcCC---CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhh
Q 009184          396 DIKKEAAWAISNATSGGTHEQIKFLVIQGCI--KPLCDLLVC---PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT  470 (541)
Q Consensus       396 ~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i--~~L~~lL~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  470 (541)
                      ++-.-......++...++  ..    +.++.  +++-.+=+.   ++.+......|.+.++.-..+...  .....-..+
T Consensus       634 ~v~~p~s~~~v~l~e~~d--~f----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~--vtratveR~  705 (743)
T COG5369         634 HVLLPISYTIVNLSENSD--KF----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSE--VTRATVERI  705 (743)
T ss_pred             cccCccceeeeccccccc--cc----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCc--cchhhHHHH
Confidence            122222223333332111  10    11111  222222111   223455555555555432211111  001222457


Q ss_pred             hHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184          471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  504 (541)
Q Consensus       471 ~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~  504 (541)
                      +.+.+.|.-+.+..+|.++++.|++++...++..
T Consensus       706 ~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         706 QILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence            8888899999999999999999999999988653

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=1.6e-05  Score=72.78  Aligned_cols=291  Identities=18%  Similarity=0.170  Sum_probs=183.4

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      +..++.++.+.+ |.++..|+..+..++..   .-+.+.  +...++.+.+++....+  .+.|+.++.|++.+.. .|+
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHH
Confidence            456888999998 99999999999999885   122222  23567889999987666  6789999999997665 788


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh-------hhhchHHHHHHhhccCCh--hHHHHHHHH
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD-------QVSPALPALAHLIHSNDD--EVLTDACWA  266 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-------~~~~~l~~L~~lL~~~d~--~v~~~a~~~  266 (541)
                      .++.. ++..++..+ .++...+...+|..|+|+++........       ...+++.....+...+-.  .-..+.+..
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            87776 666667766 5555677888899999999886322111       113344444444443321  234566677


Q ss_pred             HHHhccCChHHHHHHHHhCc--HHHHHHhhCCCChhhHH-HHHHHHhHhhcCCchhHHHHHhc--CchHHHHHhhcCCCc
Q 009184          267 LSYLSDGTNDKIQAVIEAGV--FPRLAEFLMHPSPSVLI-PALRTVGNIVTGDDMQTQCVIEY--QALPCLLNLLSGNYK  341 (541)
Q Consensus       267 L~~l~~~~~~~~~~~~~~g~--l~~L~~lL~~~~~~v~~-~al~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~  341 (541)
                      +++++.....+ ..+.+...  ...+..+-. .+..+|. ..+.+|.|++.....+- .+++.  .+++.|+-=+..+ .
T Consensus       156 f~nls~~~~gR-~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagp-e  231 (353)
T KOG2973|consen  156 FANLSQFEAGR-KLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGP-E  231 (353)
T ss_pred             HHHHhhhhhhh-hHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCc-c
Confidence            78887665544 33444332  222333333 4445554 46678888886554433 33331  2333332222222 1


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc-----CchhHHHHHHHHHHHhccCCCHHH
Q 009184          342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN-----AEFDIKKEAAWAISNATSGGTHEQ  416 (541)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~~~~~~  416 (541)
                       +              -+.+.+.                +.-..| ++|..     +++.+++.-+.+|.-++.  +...
T Consensus       232 -e--------------~sEEdm~----------------~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLca--T~~G  277 (353)
T KOG2973|consen  232 -E--------------LSEEDMA----------------KLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCA--TRAG  277 (353)
T ss_pred             -c--------------cCHHHHh----------------cCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHh--hhHh
Confidence             0              0222222                233333 66652     478999999999999987  5678


Q ss_pred             HHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHHhh
Q 009184          417 IKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       417 ~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~~~  455 (541)
                      ++.+.+.|+.+.+-.+-++ +|+++...+......++...
T Consensus       278 Re~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e  317 (353)
T KOG2973|consen  278 REVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLE  317 (353)
T ss_pred             HHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcc
Confidence            8888999999888887665 57788887777776666543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=3.1e-05  Score=79.37  Aligned_cols=343  Identities=15%  Similarity=0.188  Sum_probs=211.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (541)
                      -..+..+|.|.....+..|...|..+...+++  .     +..+|..|+...+.+ .+++...---|...+...++..  
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--  106 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--  106 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--
Confidence            35788899998888999999888877655422  2     335889999999988 9999988888888887554432  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (541)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  234 (541)
                      +   =-|..+-+-|.++++.+|..|+++|+.|=.       .++. +++-.-++....+..+-+++.|+.++-.|-+-.+
T Consensus       107 L---LSIntfQk~L~DpN~LiRasALRvlSsIRv-------p~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~  175 (968)
T KOG1060|consen  107 L---LSINTFQKALKDPNQLIRASALRVLSSIRV-------PMIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP  175 (968)
T ss_pred             e---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch-------hhHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh
Confidence            1   136788889999999999999988887621       1110 0111111112256677888888888887766543


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH----HHH----------------------hC---
Q 009184          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA----VIE----------------------AG---  285 (541)
Q Consensus       235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~----~~~----------------------~g---  285 (541)
                      ...    ..++..+-.+|...++-|.-.|..++-.+|-..-+.+..    ++.                      .+   
T Consensus       176 e~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~  251 (968)
T KOG1060|consen  176 EQK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD  251 (968)
T ss_pred             hhH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence            322    244455555566666666666666655554322111110    000                      00   


Q ss_pred             ------------------------------------cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCch
Q 009184          286 ------------------------------------VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL  329 (541)
Q Consensus       286 ------------------------------------~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l  329 (541)
                                                          ++...-.+|.+.++.+...++.+...++...+       ..+++
T Consensus       252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~-------~~~i~  324 (968)
T KOG1060|consen  252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ-------VTKIA  324 (968)
T ss_pred             ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH-------HHHHH
Confidence                                                11122233444555666666666666654221       13457


Q ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc-hh------------h-HHHHHhcC----cHHHHHHHhh
Q 009184          330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH-AF------------S-IIAVIEAN----IIGPLVALLE  391 (541)
Q Consensus       330 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-~~------------~-~~~l~~~~----~l~~L~~~l~  391 (541)
                      ..|+.+|.+.  ..+|.-.+..+..++...+......++.+ .+            + ...+++.+    +++.+..+..
T Consensus       325 kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~  402 (968)
T KOG1060|consen  325 KALVRLLRSN--REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIK  402 (968)
T ss_pred             HHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Confidence            7888888764  56777777777777665554433222211 00            1 11222222    4455555666


Q ss_pred             cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184          392 NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       392 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~  457 (541)
                      +.+.++...++.+|+.++.....      +...++..|+.++++.|..++..+.-.|+.|++..+.
T Consensus       403 s~d~~faa~aV~AiGrCA~~~~s------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~  462 (968)
T KOG1060|consen  403 SSDRSFAAAAVKAIGRCASRIGS------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA  462 (968)
T ss_pred             cCchhHHHHHHHHHHHHHHhhCc------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence            77778888899999988763211      3445788999999999988888888888888876554

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=8.2e-06  Score=80.41  Aligned_cols=317  Identities=13%  Similarity=0.115  Sum_probs=203.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .++.++.++...|..+++-|+..+.+++..-+......  -..+...+.++..+++ ..++. ++..+-.+..+-.....
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTESA  160 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhccccc
Confidence            57888889998999999999999888876532222211  2445677778777766 55543 44444444332111111


Q ss_pred             -HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH-hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          154 -VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       154 -~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                       .+-=.+++|.|-.-+...++..|...+.-|.-+-.- | ..+.+- -..+++.|+..| .+++.+++..+-.+++++..
T Consensus       161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P-~~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-P-DLEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-C-cHHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHH
Confidence             111124556666556667788887776666655322 2 223322 123566777778 77788888777777777765


Q ss_pred             CC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCCh-hhHHHHHHHH
Q 009184          232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALRTV  309 (541)
Q Consensus       232 ~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~-~v~~~al~~L  309 (541)
                      .- ..+........++.++.-+.++++.++..|+.-+.....-..... ...-+|++..+++++.+..+ .++..+...-
T Consensus       238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n  316 (675)
T KOG0212|consen  238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMVN  316 (675)
T ss_pred             HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHHH
Confidence            44 333333557788999999999999998777665555554333221 23445888888888877665 3554444332


Q ss_pred             ---hHhhcCCchhHHHHHhc-CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHH
Q 009184          310 ---GNIVTGDDMQTQCVIEY-QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGP  385 (541)
Q Consensus       310 ---~nl~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  385 (541)
                         ..++....... . ++. .+++.+.+.+.++ ..+.|.++..-+..+-...+.++            ......+++.
T Consensus       317 ~~l~~l~s~~~~~~-~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql------------~~h~~~if~t  381 (675)
T KOG0212|consen  317 GLLLKLVSSERLKE-E-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL------------LVHNDSIFLT  381 (675)
T ss_pred             HHHHHHHhhhhhcc-c-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh------------hhhccHHHHH
Confidence               22222111111 1 333 4678889999988 88899888877777776555544            3456689999


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhccCCC
Q 009184          386 LVALLENAEFDIKKEAAWAISNATSGGT  413 (541)
Q Consensus       386 L~~~l~~~~~~v~~~a~~aL~nl~~~~~  413 (541)
                      |+..|++.+.+|...++..+.+++...+
T Consensus       382 LL~tLsd~sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  382 LLKTLSDRSDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             HHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999987543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.55  E-value=1.2e-05  Score=77.53  Aligned_cols=267  Identities=14%  Similarity=0.082  Sum_probs=175.9

Q ss_pred             CCHHHHHHhhcCCCHH--HHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           73 ENLPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~--~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      +.+..++.++.+++.+  ++.++.+.|..++..   .+.+.+..-| +..++.+-+....++.+...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            5788899999987754  589999999999864   4555565555 445555555555589999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  229 (541)
                      ....++..|++..++-.....++.+..+|+.+|+|++-+. ...+..+++..+-+-|.-+. .+.|.-++.++|.+.+.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            9999999999999999999989999999999999998443 34555566665555455444 666888899999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (541)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  309 (541)
                      +..+.........+.+..+-.++.+-|+.--..   --...+.+        ....-+++|+.+|++...+.+.-+..-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            988755444444555555555555555442111   00111111        1114577888899865544333333222


Q ss_pred             hHhhcCC--chhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184          310 GNIVTGD--DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (541)
Q Consensus       310 ~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (541)
                      +.=+.-.  ....+.+-+-|.++.|-.+.+++ +..--+-|-.+|.-|.
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG  451 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG  451 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence            2211111  12233445678899999998876 5544444444444443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.54  E-value=0.0001  Score=77.18  Aligned_cols=418  Identities=17%  Similarity=0.189  Sum_probs=229.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHh-------------------------------------cC
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-------------------------------------SG  116 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~-------------------------------------~g  116 (541)
                      .+..+++.|...+.++|..|++++.-+.+.-+...+..+++                                     ..
T Consensus        48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t  127 (1233)
T KOG1824|consen   48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT  127 (1233)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence            46677778877888888888888886554432222222221                                     11


Q ss_pred             CHHHHHHhhc----C-CCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009184          117 VVPRFVEFLL----R-EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (541)
Q Consensus       117 ~i~~Lv~lL~----~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  191 (541)
                      +++.+...+.    . .+...++..++..++.+.+......-. ...+++..++.-+.++...++..++.+|+.++...+
T Consensus       128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~  206 (1233)
T KOG1824|consen  128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN  206 (1233)
T ss_pred             HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence            2222222221    1 111235555555555444311111000 123444555556677888999999999999986654


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh---ccCChhHHHHHHHHHH
Q 009184          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---HSNDDEVLTDACWALS  268 (541)
Q Consensus       192 ~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL---~~~d~~v~~~a~~~L~  268 (541)
                      .  +..  .+.+..+++-|...+.....+....+|..+|+.....-......++|.+....   ..+++++++.++.++.
T Consensus       207 ~--~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale  282 (1233)
T KOG1824|consen  207 R--DLY--VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALE  282 (1233)
T ss_pred             H--HHH--HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            2  222  23677888888777788888889999999998765544455677888888888   6678899999999988


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhhCC----------------------------------CChhhHHHHHHHHhHhhc
Q 009184          269 YLSDGTNDKIQAVIEAGVFPRLAEFLMH----------------------------------PSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       269 ~l~~~~~~~~~~~~~~g~l~~L~~lL~~----------------------------------~~~~v~~~al~~L~nl~~  314 (541)
                      .+....+..+...+. .++..+++.+..                                  -+|.+|.+|+.++..+..
T Consensus       283 ~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~Is  361 (1233)
T KOG1824|consen  283 SFLRRCPKEILPHVP-EIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVIS  361 (1233)
T ss_pred             HHHHhChhhhcccch-HHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHh
Confidence            776555543332221 334444444321                                  125799999999988876


Q ss_pred             CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh--------------------------
Q 009184          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH--------------------------  368 (541)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--------------------------  368 (541)
                      ...+....+.. .+-|.++.-++.. ...|+.....+...+....+..+..+-+                          
T Consensus       362 SR~E~L~~~~q-~l~p~lI~RfkER-EEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVka  439 (1233)
T KOG1824|consen  362 SRLEMLPDFYQ-TLGPALISRFKER-EENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKA  439 (1233)
T ss_pred             ccHHHHHHHHH-HhCHHHHHHHHHH-hhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHH
Confidence            55443322221 2333344444333 3333333333332222211110000000                          


Q ss_pred             -------------hchhhH-HHH--------H--hcCcHHHHHHHhhcC--chhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 009184          369 -------------VHAFSI-IAV--------I--EANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVI  422 (541)
Q Consensus       369 -------------~~~~~~-~~l--------~--~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  422 (541)
                                   ...|.. ..+        .  ...++|.++..+.+.  ....+..++..+.++.....++...-+. 
T Consensus       440 i~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~-  518 (1233)
T KOG1824|consen  440 IQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL-  518 (1233)
T ss_pred             HHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch-
Confidence                         001100 000        0  113456666666543  3567788888888877766655433322 


Q ss_pred             cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH-hcCCCHHHHHHHHHHH
Q 009184          423 QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLL  501 (541)
Q Consensus       423 ~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L-~~~~~~~i~~~a~~il  501 (541)
                      ..+.+++......+-+++..-+|-....++++-.........+.++|...+-.    -.+..| ....+.+|+++|...+
T Consensus       519 ~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~----~tl~rL~a~d~DqeVkeraIscm  594 (1233)
T KOG1824|consen  519 SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD----CTLQRLKATDSDQEVKERAISCM  594 (1233)
T ss_pred             hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH----HHHHHHhcccccHHHHHHHHHHH
Confidence            12344455555556667766667666666665443322111234555554442    234444 3678999999997655


Q ss_pred             HHh
Q 009184          502 ETY  504 (541)
Q Consensus       502 ~~~  504 (541)
                      ..|
T Consensus       595 gq~  597 (1233)
T KOG1824|consen  595 GQI  597 (1233)
T ss_pred             HHH
Confidence            443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=9.8e-05  Score=74.34  Aligned_cols=344  Identities=17%  Similarity=0.171  Sum_probs=222.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .+..+++.+..+.+.+|.....++.-+...........     +.+.+.++++... ..-+..+++.+..+..+..  ..
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~~--i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLTSTK-IAERAGAAYGLAGLVNGLG--IE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhcccc-HHHHhhhhHHHHHHHcCcH--Hh
Confidence            45667777777888899998888887665432333333     4677888888777 7888999999999988643  33


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHH-HHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVRE-QAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~-~a~~~L~nl~~~-~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      .+.+.+++..|...+.+.....+. .++.+.-..+.. ++..-..++.  .++.++.-. .+....++..+..+...+.+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            455667888888888774433333 333333333221 1211112222  344455444 45667788888777776665


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      .-+.   ..+..++|.++.-+..........++..++.++...+.+.. ..-..++|.+.+.|.+.++.++..+..++..
T Consensus       246 ~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            5321   22344556655555545667778888888888877776654 4556899999999999999999999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVA  388 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~  388 (541)
                      ++..-+..-   + ..++|.|+..+.++ ... -.++...|+.-+.   -.+....                -++|.|.+
T Consensus       322 ~~svidN~d---I-~~~ip~Lld~l~dp-~~~-~~e~~~~L~~ttFV~~V~~psLa----------------lmvpiL~R  379 (569)
T KOG1242|consen  322 FGSVIDNPD---I-QKIIPTLLDALADP-SCY-TPECLDSLGATTFVAEVDAPSLA----------------LMVPILKR  379 (569)
T ss_pred             HHHhhccHH---H-HHHHHHHHHHhcCc-ccc-hHHHHHhhcceeeeeeecchhHH----------------HHHHHHHH
Confidence            886443211   1 24577888888776 322 2344444443322   1111111                24666777


Q ss_pred             HhhcCchhHHHHHHHHHHHhccCC-CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184          389 LLENAEFDIKKEAAWAISNATSGG-THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       389 ~l~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~  455 (541)
                      -+...+..+++.++.++.|++.-- ++.....+.. .+++.|-..+....|+++..+..+|..+++.-
T Consensus       380 ~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~  446 (569)
T KOG1242|consen  380 GLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERL  446 (569)
T ss_pred             HHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            777778899999999999998643 3333222221 35667777777778999999999998887643

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.50  E-value=4.4e-06  Score=82.99  Aligned_cols=335  Identities=16%  Similarity=0.145  Sum_probs=201.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCC-CCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      .+..++..|++..|.++..|+.....+...-+ ......+...|.  .|.+.|.... |++.-..+.++..|.+.. ..+
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~-~~~  680 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVH-RFR  680 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhh-ccc
Confidence            35667788899999999999887765543211 122333434443  4677777776 888877777777776521 111


Q ss_pred             HH-HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184          153 KV-VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (541)
Q Consensus       153 ~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~  228 (541)
                      .. ---.|++|.|.-+|.+....+....+..++.||..+|+.   |+-..   +.-.|+..| ++.+.+++++|..++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG~  756 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFGC  756 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhhh
Confidence            00 012489999999999999999999999999999877752   22111   233466777 77789999999999998


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (541)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  308 (541)
                      +++.-      .-..++..|+.-|...+-..+....-+++-.+..+.-       ..++|.|+.=-..++..++.-.+++
T Consensus       757 Is~ai------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLka  823 (975)
T COG5181         757 ISRAI------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLKA  823 (975)
T ss_pred             HHhhc------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHHH
Confidence            88753      1144566666666554444333333333332221110       1345555555566788889888988


Q ss_pred             HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA  388 (541)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~  388 (541)
                      ++.+...-.+.....+ .-+.|.|-..|.+. ++.-|..|...+..++.+.+..-..    +     .++  .++..|..
T Consensus       824 m~fmFeyig~~s~dYv-y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~e----d-----a~I--HLlNllwp  890 (975)
T COG5181         824 MCFMFEYIGQASLDYV-YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDE----D-----AAI--HLLNLLWP  890 (975)
T ss_pred             HHHHHHHHHHHHHHHH-HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccH----H-----HHH--HHHHHhhh
Confidence            8877754333221111 34677788888888 9999999999999998753322110    0     111  13333443


Q ss_pred             HhhcCchhHHHH---HHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          389 LLENAEFDIKKE---AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       389 ~l~~~~~~v~~~---a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      -+-.+.|.+...   ++.++.+....  ....++         +.+=|-.+...++. .-+...+++..
T Consensus       891 NIle~sPhvi~~~~Eg~e~~~~~lg~--g~~m~Y---------v~qGLFHPs~~VRk-~ywtvyn~myv  947 (975)
T COG5181         891 NILEPSPHVIQSFDEGMESFATVLGS--GAMMKY---------VQQGLFHPSSTVRK-RYWTVYNIMYV  947 (975)
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHhcc--HHHHHH---------HHHhccCchHHHHH-HHHHHHhhhhh
Confidence            334456666554   44455554432  233333         33334455555554 45666666644

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=7.7e-05  Score=78.63  Aligned_cols=304  Identities=13%  Similarity=0.194  Sum_probs=199.9

Q ss_pred             hcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh
Q 009184           71 KLENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS  149 (541)
Q Consensus        71 ~~~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~  149 (541)
                      -++.++-+...|.+ +++.++..|+..+..+.+.  .+....+...|++..|+.+|.+.  |..+..++.+|..+++ ++
T Consensus      1769 lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~ 1843 (2235)
T KOG1789|consen 1769 LIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS-NG 1843 (2235)
T ss_pred             hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc-Cc
Confidence            45677788888875 7889999999999877654  67788899999999999999764  7999999999999998 67


Q ss_pred             hHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC---hhhHHHHHhc----------CChHHHHHhhcC-CC
Q 009184          150 EHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS---PRCRDLVLSQ----------GGLVPLLAQLNG-QP  214 (541)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~---~~~r~~i~~~----------g~i~~Ll~~l~~-~~  214 (541)
                      +......+.|++..+..++.. .++..|.+++..++.+..+.   |..+-.++..          +.-+..+..+.. +.
T Consensus      1844 ~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~E 1923 (2235)
T KOG1789|consen 1844 QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSE 1923 (2235)
T ss_pred             HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCC
Confidence            777788888888888876654 77899999999999997543   2222211110          012333333321 11


Q ss_pred             hh------hHHHHHHHHHHhhh----cCC---CCC--------------------------------------Chhhhhc
Q 009184          215 KL------SMLRNATWTLSNFC----RGK---PQP--------------------------------------PFDQVSP  243 (541)
Q Consensus       215 ~~------~~~~~a~~~L~~l~----~~~---~~~--------------------------------------~~~~~~~  243 (541)
                      ++      ..+......+..+.    +..   |..                                      ......+
T Consensus      1924 nPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~ 2003 (2235)
T KOG1789|consen 1924 NPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTE 2003 (2235)
T ss_pred             CcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHH
Confidence            22      22222222222221    111   100                                      0112244


Q ss_pred             hHHHHHHhhccCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184          244 ALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (541)
Q Consensus       244 ~l~~L~~lL~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  321 (541)
                      ++..+..++..+++  ....-...++..+....+...+.+-..|.+|.++..+...+..+-..|++.|..++.. .-..+
T Consensus      2004 LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~ 2082 (2235)
T KOG1789|consen 2004 LLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCD 2082 (2235)
T ss_pred             HHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHH
Confidence            55556666654432  2223333344444445555555566669999999999888888889999999999863 34445


Q ss_pred             HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC
Q 009184          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA  393 (541)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~  393 (541)
                      .+.....+..+++.+...  +...--|+.+|-.+.. ...+.+.           ..++.|++|.|+.+|...
T Consensus      2083 AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVA-----------Q~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2083 AMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVA-----------QMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHH-----------HHhccCcHHHHHHHhccc
Confidence            555556666688777764  3344578888888876 3445555           677899999999999864

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.49  E-value=2.5e-05  Score=77.82  Aligned_cols=337  Identities=14%  Similarity=0.130  Sum_probs=208.9

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC--hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (541)
                      ++...+.+|.+.. |.++..|+...+.++.--  ......+...|  ..|...|....+++.-..+.++..|..... ++
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~  680 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR  680 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence            4556777888887 999999998888776521  11223333344  346677777889888888888777753221 11


Q ss_pred             HH-HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184          195 DL-VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       195 ~~-i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  272 (541)
                      .. ---.|++|.|..+| ++....+..+....+..+|...|.... .....+.=.|+.+|.+.+.+++..|..+++.++.
T Consensus       681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            11 01356788888888 788899999999999999988754322 2223444457778888999999999999999874


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (541)
Q Consensus       273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (541)
                      .-.       -.+++..|+.-|+..+-..+....-+++-++..+..       ..++|.|+.-...+ +..|+.-.+.++
T Consensus       760 aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 AIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             hcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            321       124555666666555544444444444444332211       23456666655666 777888777777


Q ss_pred             HHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHH-HHHHHHHcCChHHHh
Q 009184          353 SNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE-QIKFLVIQGCIKPLC  430 (541)
Q Consensus       353 ~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~-~~~~l~~~~~i~~L~  430 (541)
                      +.+... .....+           ++.  -+.|.|-+.|.+.|+--|..|...+.+++.++... ....++  .++..|.
T Consensus       825 ~fmFeyig~~s~d-----------Yvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~I--HLlNllw  889 (975)
T COG5181         825 CFMFEYIGQASLD-----------YVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAI--HLLNLLW  889 (975)
T ss_pred             HHHHHHHHHHHHH-----------HHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHH--HHHHHhh
Confidence            777652 111222           221  36788888899899999999999999998764211 011110  0122222


Q ss_pred             hhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          431 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       431 ~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                      .-+-.+.|.++....+++..+...-..         .+         .+..+.+=.-|+...|++..-..++.++-
T Consensus       890 pNIle~sPhvi~~~~Eg~e~~~~~lg~---------g~---------~m~Yv~qGLFHPs~~VRk~ywtvyn~myv  947 (975)
T COG5181         890 PNILEPSPHVIQSFDEGMESFATVLGS---------GA---------MMKYVQQGLFHPSSTVRKRYWTVYNIMYV  947 (975)
T ss_pred             hhccCCCcHHHHHHHHHHHHHHHHhcc---------HH---------HHHHHHHhccCchHHHHHHHHHHHhhhhh
Confidence            222345677777777777766543211         01         12344444578999998877666665543

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00015  Score=74.53  Aligned_cols=257  Identities=18%  Similarity=0.169  Sum_probs=153.8

Q ss_pred             HhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 009184          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (541)
Q Consensus       123 ~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~  202 (541)
                      +...+.. +-+|..|+.++..+-+-.++....+.     ..+-.+|.+.++-+.-.|+.++-.+|-+.-   +.+  .+-
T Consensus       150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn  218 (968)
T KOG1060|consen  150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQLE-----EVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN  218 (968)
T ss_pred             HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHHH-----HHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence            3444555 77888888888888777777766443     445556777778888888888877764332   222  223


Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCCh----------------------------hhhhchHHHHHHhhc
Q 009184          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF----------------------------DQVSPALPALAHLIH  253 (541)
Q Consensus       203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~----------------------------~~~~~~l~~L~~lL~  253 (541)
                      ...++++| .+-++==+..++.+|...|+.. +.+..                            .-..-++...-.+|.
T Consensus       219 yrklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~  297 (968)
T KOG1060|consen  219 YRKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ  297 (968)
T ss_pred             HHHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence            56667766 3333333445555666666654 22211                            011234555666788


Q ss_pred             cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch---------------
Q 009184          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM---------------  318 (541)
Q Consensus       254 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~---------------  318 (541)
                      +.++.|...++.++.+++....  ..     +++..|+.+|.+.. .++.-.+..|..++...+.               
T Consensus       298 S~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD  369 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD  369 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence            8999999999999999884332  12     45677788775433 3444455555544432211               


Q ss_pred             --hHHH--------HHhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHH
Q 009184          319 --QTQC--------VIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIG  384 (541)
Q Consensus       319 --~~~~--------~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  384 (541)
                        ++..        +++.    .+++-+...+.+. +..+...|..+|+.++...-..-                ...+.
T Consensus       370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv~----------------~tCL~  432 (968)
T KOG1060|consen  370 PTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSVT----------------DTCLN  432 (968)
T ss_pred             HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCchh----------------hHHHH
Confidence              1100        0111    1233344445555 55677777788887776322222                24667


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhccCCCHHH
Q 009184          385 PLVALLENAEFDIKKEAAWAISNATSGGTHEQ  416 (541)
Q Consensus       385 ~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~  416 (541)
                      .|+.++++.+..|..+++..|..++.....++
T Consensus       433 gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  433 GLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHhhChHHH
Confidence            88999999999999999999999988644444

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=7e-05  Score=79.21  Aligned_cols=256  Identities=15%  Similarity=0.144  Sum_probs=168.0

Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009184          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (541)
Q Consensus       203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  282 (541)
                      ++.+-.+. .+.+..++...+..+..+.--.+  ....+...+|.+...++..++.|+.+..|.+..+-...+..-...+
T Consensus       400 lp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~  476 (759)
T KOG0211|consen  400 LPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV  476 (759)
T ss_pred             hHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence            33333333 55556666555555544433222  2234567788888899999999999999888665443332222244


Q ss_pred             HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CCh
Q 009184          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNR  360 (541)
Q Consensus       283 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~  360 (541)
                      ....++.+..+-....+.++...+..+-.++....   ..+++...-+.+...+.+. ...+++.|+..+.-++.  |..
T Consensus       477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~  552 (759)
T KOG0211|consen  477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSE  552 (759)
T ss_pred             hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcc
Confidence            45677888888777789999999988887775333   2344445556666667666 77899999988888876  333


Q ss_pred             HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHH
Q 009184          361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI  440 (541)
Q Consensus       361 ~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  440 (541)
                      ..+.                ..++.++.....++...|...+.++.-++.....+    +....+++.+.++..++.+++
T Consensus       553 w~~~----------------~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~vanV  612 (759)
T KOG0211|consen  553 WARL----------------EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVANV  612 (759)
T ss_pred             hhHH----------------HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCchhh
Confidence            3333                46777777776667888888888888776533222    234457889999999999999


Q ss_pred             HHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHH
Q 009184          441 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVK  499 (541)
Q Consensus       441 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~  499 (541)
                      +..+++.|..+...-....              .+......++.|...++.+++.+|..
T Consensus       613 R~nvak~L~~i~~~L~~~~--------------~~~~v~pll~~L~~d~~~dvr~~a~~  657 (759)
T KOG0211|consen  613 RINVAKHLPKILKLLDESV--------------RDEEVLPLLETLSSDQELDVRYRAIL  657 (759)
T ss_pred             hhhHHHHHHHHHhhcchHH--------------HHHHHHHHHHHhccCcccchhHHHHH
Confidence            9999999988886543221              11223455566666666666655533

>PF05536 Neurochondrin: Neurochondrin

Probab=98.38  E-value=0.00055  Score=71.17  Aligned_cols=236  Identities=19%  Similarity=0.153  Sum_probs=162.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc--HHHHHhcCCHHHHHHhhcCCC------cHHHHHHHHHHHHHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNI  144 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~i~~g~i~~Lv~lL~~~~------~~~i~~~a~~~L~~l  144 (541)
                      +.+.+.+..|++.+.+.++.|+-.+.+++...+...  .+.+.+.=..+.|-.+|.++.      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            367888999999888899999999999987642222  234666656777888888732      256788889999999


Q ss_pred             hcCChhHH--HHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHH
Q 009184          145 ASGTSEHT--KVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN  221 (541)
Q Consensus       145 ~~~~~~~~--~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~  221 (541)
                      +. .++..  ..++  +-||.|+..+...+. .+...|+.+|..++ ..++.+..+++.|.++.|...+.+  .+.....
T Consensus        85 ~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~  158 (543)
T PF05536_consen   85 CR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEI  158 (543)
T ss_pred             cC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence            88 34443  2233  468999999988666 99999999999999 455578888999999999999944  5566788


Q ss_pred             HHHHHHhhhcCCCCC----ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHH-HHHHHH----hCcHHHHHH
Q 009184          222 ATWTLSNFCRGKPQP----PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVFPRLAE  292 (541)
Q Consensus       222 a~~~L~~l~~~~~~~----~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~-~~~~~~----~g~l~~L~~  292 (541)
                      ++.++.+++......    .......+++.+...+...........|..|..+....+.. ......    ..+...+..
T Consensus       159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~  238 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD  238 (543)
T ss_pred             HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence            888888877654321    12223455666777776666777788888888876554211 111111    133444555


Q ss_pred             hhCC-CChhhHHHHHHHHhHhhc
Q 009184          293 FLMH-PSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       293 lL~~-~~~~v~~~al~~L~nl~~  314 (541)
                      +|++ ..+.-|.+++...+.+..
T Consensus       239 iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  239 ILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHH
Confidence            5644 346667777777666654

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=3.3e-06  Score=82.57  Aligned_cols=281  Identities=17%  Similarity=0.248  Sum_probs=185.6

Q ss_pred             HHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009184          112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (541)
Q Consensus       112 ~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  191 (541)
                      +.+..+.+.|+++|+.++ ..+..-+...++|..-..+.-+..+++.|++..|+.++.+.+..++....|.+..+..++.
T Consensus       427 L~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq  505 (743)
T COG5369         427 LLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ  505 (743)
T ss_pred             ccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence            345678999999999887 7788888889999988778888889999999999999999899999999999999986554


Q ss_pred             hh-HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC-C-Chhhh------hchHHHHHHhhccCChhHHHH
Q 009184          192 RC-RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P-PFDQV------SPALPALAHLIHSNDDEVLTD  262 (541)
Q Consensus       192 ~~-r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~-~~~~~------~~~l~~L~~lL~~~d~~v~~~  262 (541)
                      +. +-..+..-++..++... .++.-.++..++.+|.|+.-+... . .....      .-+...+++.+...++-....
T Consensus       506 ~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         506 KNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             chhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence            32 22344444688888888 788899999999999999864321 1 11111      224455666677777666666


Q ss_pred             HHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC-----------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchH
Q 009184          263 ACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH-----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALP  330 (541)
Q Consensus       263 a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~-----------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~  330 (541)
                      .|..|.+++..++...+.+.+. .++..+..+|..           ....+..+-.....++....+.....+.-.   |
T Consensus       585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p  661 (743)
T COG5369         585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---P  661 (743)
T ss_pred             hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---C
Confidence            7888888876655554544443 455555444411           112233333334444443322222111100   1


Q ss_pred             HHHHhh--cCCCchhHHHHHHHHHHHHhc---CCh------HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184          331 CLLNLL--SGNYKKSIKKEACWTVSNITA---GNR------EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK  399 (541)
Q Consensus       331 ~L~~lL--~~~~~~~v~~~a~~~L~nl~~---~~~------~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~  399 (541)
                      .+-.+=  ....+.++-.+..|.+.|+.-   +..      +.++           .+.+.|+-+.|..+-..+++.||.
T Consensus       662 ~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~-----------iL~~~G~~e~l~k~q~~~Sl~vre  730 (743)
T COG5369         662 HLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQ-----------ILCANGIREWLVKIQAKDSLIVRE  730 (743)
T ss_pred             CccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHH-----------HHHHccHHHHHHHHhccCcHHHHH
Confidence            111111  111145677888898888653   222      4455           667777777777777777889999


Q ss_pred             HHHHHHHHh
Q 009184          400 EAAWAISNA  408 (541)
Q Consensus       400 ~a~~aL~nl  408 (541)
                      .+-.+|.++
T Consensus       731 k~~taL~~l  739 (743)
T COG5369         731 KIGTALENL  739 (743)
T ss_pred             HHHHHHHhh
Confidence            999999886

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=0.00022  Score=65.99  Aligned_cols=300  Identities=14%  Similarity=0.125  Sum_probs=197.1

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHH--HHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRF--VEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~L--v~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      +.++.++..+..+|.++...|...+..+...  ......+..+.....+  .++-...+ .-.+......+..|.+-+++
T Consensus       128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence            5678888999988999999999999888654  4455566666555443  33333344 67788899999999999999


Q ss_pred             HHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHh
Q 009184          151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSN  228 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-~~~~~~~~a~~~L~~  228 (541)
                      ....+-..|.+..|..-|.. .+.-++..++.....++...- .|+.+.+.|.+..+.+++... +++--.-.++.....
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk  283 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK  283 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence            99999999999999888877 777788888888888875433 577888889999999988432 233323334444444


Q ss_pred             hhcCCCCC--Chh----hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCc--HHHHHHhh-CCCCh
Q 009184          229 FCRGKPQP--PFD----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--FPRLAEFL-MHPSP  299 (541)
Q Consensus       229 l~~~~~~~--~~~----~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~--l~~L~~lL-~~~~~  299 (541)
                      +.......  ...    ...-.+.....++..+|+..+..+..+++.+..+... .+.+.+.|-  ..+++.-. .....
T Consensus       284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah  362 (524)
T KOG4413|consen  284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH  362 (524)
T ss_pred             HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence            43332111  111    1123344456677789999999999999998765443 354555542  34444333 33334


Q ss_pred             hhHHHHHHHHhHhhcCC---chh----------HHHHHh-------cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184          300 SVLIPALRTVGNIVTGD---DMQ----------TQCVIE-------YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (541)
Q Consensus       300 ~v~~~al~~L~nl~~~~---~~~----------~~~~~~-------~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (541)
                      .-+..++++|.+++...   +++          +..+.+       ..-+..+...++.+ .++++..+..++..++...
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP  441 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP  441 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence            45677888888887532   111          111111       12345566777877 8999999999999998753


Q ss_pred             hHHHHHHHhhchhhHHHHHhcCcHHHHHHH
Q 009184          360 REQIQVIMHVHAFSIIAVIEANIIGPLVAL  389 (541)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~  389 (541)
                      =.+..           .+...++++.+.+.
T Consensus       442 Walke-----------ifakeefieiVtDa  460 (524)
T KOG4413|consen  442 WALKE-----------IFAKEEFIEIVTDA  460 (524)
T ss_pred             HHHHH-----------HhcCccceeeeccc
Confidence            33333           33456676666554

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00018  Score=66.19  Aligned_cols=270  Identities=16%  Similarity=0.217  Sum_probs=165.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHH--hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +..+++++.+.+|.++..|+..+..+...    +.+.+.  +...++.+.+++.... +  ...|+.+|.|++. ....+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence            46789999999999999999988877543    333332  2446888999998876 4  6789999999998 47777


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-----CChHHHHHhhcCCC-h-hhHHHHHHHH
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-----GGLVPLLAQLNGQP-K-LSMLRNATWT  225 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-----g~i~~Ll~~l~~~~-~-~~~~~~a~~~  225 (541)
                      +.+++. .+..++..+.++...+.+..+..|+|++.+...+.......     ..+..+.....+.+ + ..-..+.+.+
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            777765 77777778777767788889999999999887665554321     13344444442322 2 1335667778


Q ss_pred             HHhhhcCCCCCChhhhhchHH--HHHHhhccCChhHH-HHHHHHHHHhccCChHHHHHHHHh--CcHHHHH---------
Q 009184          226 LSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDDEVL-TDACWALSYLSDGTNDKIQAVIEA--GVFPRLA---------  291 (541)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~l~--~L~~lL~~~d~~v~-~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L~---------  291 (541)
                      ++|+++....+........+|  .++.+-. .+..++ ...+.+|.|+|-....... +++.  .+++.++         
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence            888887754443333333222  2333333 444443 3355666666543322211 2211  2222221         


Q ss_pred             ------------HhhC-----CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          292 ------------EFLM-----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       292 ------------~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                                  ++|.     .+++.++..-+.+|--+++.. ..++.+.+.|+.+.+-.+=+...+++++ .+|.-+++
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~-~ace~vvq  311 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIR-EACEQVVQ  311 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHH-HHHHHHHH
Confidence                        3332     246789999999998888744 3445666666666555554444355555 45555555


Q ss_pred             Hhc
Q 009184          355 ITA  357 (541)
Q Consensus       355 l~~  357 (541)
                      +..
T Consensus       312 ~Lv  314 (353)
T KOG2973|consen  312 MLV  314 (353)
T ss_pred             HHH
Confidence            544

>TIGR02270 conserved hypothetical protein

Probab=98.31  E-value=0.00021  Score=71.19  Aligned_cols=241  Identities=17%  Similarity=0.067  Sum_probs=152.9

Q ss_pred             CHHHHHHhhc-CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           74 NLPVMVAGVW-SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        74 ~l~~l~~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      .++.++..|. .+++.....++..+.   ... .+.        .+..|+..|.+.+ +.++..++.+|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~~--------~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL---AQE-DAL--------DLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-ChH--------HHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            4566666664 344555555444442   111 111        2677888888776 7788888888876543      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                           ....+.|+.+|.++++.++..++.+++..-            ....+.+...| ++.++.++..++.+|..+...
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 134577788888888888887776666521            11345677777 677888888888888877543


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                                ..++.|...+.+.++.|+..+++++..+..  .         +.+..+..+...........+..+++..
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      345566677888888888888888866632  1         1223344433333333333333333332


Q ss_pred             hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                        +.         ...++.|..+++.+   .++..++++++.+-.  +                    ..++.|+..+..
T Consensus       237 --~~---------~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p--------------------~av~~L~~~l~d  280 (410)
T TIGR02270       237 --GG---------PDAQAWLRELLQAA---ATRREALRAVGLVGD--V--------------------EAAPWCLEAMRE  280 (410)
T ss_pred             --Cc---------hhHHHHHHHHhcCh---hhHHHHHHHHHHcCC--c--------------------chHHHHHHHhcC
Confidence              11         14567788888765   389999999997643  3                    245677777764


Q ss_pred             CchhHHHHHHHHHHHhcc
Q 009184          393 AEFDIKKEAAWAISNATS  410 (541)
Q Consensus       393 ~~~~v~~~a~~aL~nl~~  410 (541)
                      +  .++..|..++..++-
T Consensus       281 ~--~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       281 P--PWARLAGEAFSLITG  296 (410)
T ss_pred             c--HHHHHHHHHHHHhhC
Confidence            3  499999999999875

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.0017  Score=66.26  Aligned_cols=326  Identities=17%  Similarity=0.154  Sum_probs=192.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      +.-+.++.|.++-...++-+--.+.-++... .+..+.     ++..+.+=|.+.+ +.....|+.+++|+.+  -+.+.
T Consensus        75 GhmEaV~LLss~kysEKqIGYl~is~L~n~n-~dl~kl-----vin~iknDL~srn-~~fv~LAL~~I~niG~--re~~e  145 (938)
T KOG1077|consen   75 GHMEAVNLLSSNKYSEKQIGYLFISLLLNEN-SDLMKL-----VINSIKNDLSSRN-PTFVCLALHCIANIGS--REMAE  145 (938)
T ss_pred             chHHHHHHhhcCCccHHHHhHHHHHHHHhcc-hHHHHH-----HHHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHH
Confidence            4456677777655444444444444444321 222222     2444555566666 8888999999999876  45555


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      .+..  =|+   ++|-+  ...-++..++.+|..+.+..|.   .+-..+....++.+| .+.+-.+...+...+.-++.
T Consensus       146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk  216 (938)
T KOG1077|consen  146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVK  216 (938)
T ss_pred             Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHh-CccccceeeehHHHHHHHHH
Confidence            4432  134   45544  3467888899999999877664   333345678889988 66667777777778888887


Q ss_pred             CCCCCChhhhhchHHHHHHhhc-------------cCChhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCCC
Q 009184          232 GKPQPPFDQVSPALPALAHLIH-------------SNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMHP  297 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~-------------~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~~  297 (541)
                      ..|.........++..|.....             -+.+-+...+++.|.++-...+ .....+.  .+++.++...+.+
T Consensus       217 ~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~  294 (938)
T KOG1077|consen  217 KNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEP  294 (938)
T ss_pred             cCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccC
Confidence            6653332222223333322221             1346677788888877642222 1111122  3444555444421


Q ss_pred             ----C---hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 009184          298 ----S---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH  370 (541)
Q Consensus       298 ----~---~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~  370 (541)
                          +   ...+...+.-.-+++..-+.....+.  ..+..|-++|.+. ...+|.-|...++.++.... .++      
T Consensus       295 ~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~-s~d------  364 (938)
T KOG1077|consen  295 PKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEF-SID------  364 (938)
T ss_pred             ccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccc-hHH------
Confidence                1   11222333333444444443332232  4567788888888 88899988888888887422 222      


Q ss_pred             hhhHHHHHhcCcHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184          371 AFSIIAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  444 (541)
Q Consensus       371 ~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~  444 (541)
                           .+-. . ...++..|+ ..|..+|+.|+..|..++...+...        ++.-+.++|...|+.+++-.
T Consensus       365 -----avK~-h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~--------IV~elLqYL~tAd~sireei  424 (938)
T KOG1077|consen  365 -----AVKK-H-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ--------IVAELLQYLETADYSIREEI  424 (938)
T ss_pred             -----HHHH-H-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH--------HHHHHHHHHhhcchHHHHHH
Confidence                 2222 2 677888888 5789999999999999987554433        45567777777777766643

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.27  E-value=0.00059  Score=67.26  Aligned_cols=317  Identities=15%  Similarity=0.079  Sum_probs=191.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhhcCCCCCChhh
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~  240 (541)
                      +.+..++-+++.+++..+.+++..+..+... -..+.+.+.--.++.-|..+ .+..=+..|+..+..+..-... ....
T Consensus        28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~~~~  105 (371)
T PF14664_consen   28 ERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-PKEI  105 (371)
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-cccC
Confidence            3344344444599999999999998877764 44555655444455555433 3444577888888888776321 2233


Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (541)
Q Consensus       241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  320 (541)
                      -.+++..++.+..+.++..+.-|+.+|+.++-.+++   .+...|++..+...+.++..++....+.++-.+...+. .+
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~-tR  181 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPR-TR  181 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcc-hh
Confidence            577888999999999999999999999999977764   47888999999999987766688888888888886443 33


Q ss_pred             HHHHhcCchHHHHHhhcCCC------ch--hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          321 QCVIEYQALPCLLNLLSGNY------KK--SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~------~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      +.+...--++.++.-+.+..      +.  +.-..+..++..+...=+-          .-++..-+...+..|+..|..
T Consensus       182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G----------Ll~l~~~~~~~lksLv~~L~~  251 (371)
T PF14664_consen  182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG----------LLYLSMNDFRGLKSLVDSLRL  251 (371)
T ss_pred             hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc----------eeeeecCCchHHHHHHHHHcC
Confidence            34443334555555444330      12  1233444445544442111          111111122578889999999


Q ss_pred             CchhHHHHHHHHHHHhccCCCHHHHHHH------HHcCCh---HHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCC
Q 009184          393 AEFDIKKEAAWAISNATSGGTHEQIKFL------VIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGN  463 (541)
Q Consensus       393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l------~~~~~i---~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~  463 (541)
                      +.+++|...+..+..+..-..+......      ...|-.   ..+..-...... ....--..-.+++....       
T Consensus       252 p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~-~~~~~~~~~~~l~~~y~-------  323 (371)
T PF14664_consen  252 PNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKS-ILPHRSSKRPNLVNHYL-------  323 (371)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccccc-ccCccccccccHHHHHH-------
Confidence            9999999999999999875433221111      111111   011100000000 00000000011111110       


Q ss_pred             CCcchhhhHhhhcchHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Q 009184          464 TDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYW  505 (541)
Q Consensus       464 ~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~i~~~a~~il~~~~  505 (541)
                         ......|.++|.++.|.++.... ++.+..+|.-+|.+++
T Consensus       324 ---aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  324 ---ALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             ---HHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence               11244566799999999997655 9999999999988765

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.25  E-value=2.3e-05  Score=62.76  Aligned_cols=153  Identities=10%  Similarity=0.030  Sum_probs=120.4

Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHH
Q 009184          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISN  407 (541)
Q Consensus       328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~n  407 (541)
                      .+..|+.-.+...+.+.+.....-|.|++.. |....           .+.+.+++..+++.+..++..++..++.+|||
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys-----------~Lrql~vLdlFvdsl~e~ne~LvefgIgglCN   84 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYS-----------HLRQLDVLDLFVDSLEEQNELLVEFGIGGLCN   84 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHH-----------HHHHhhHHHHHHHHhhcccHHHHHHhHHHHHh
Confidence            3455666565555778888888888888764 55555           88899999999999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc
Q 009184          408 ATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  487 (541)
Q Consensus       408 l~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~  487 (541)
                      ++.  ++...+.+.+.+.++.++..++++...++..++.++..+...+..           ....+.....++.++....
T Consensus        85 lC~--d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-----------~r~ell~p~Vv~~v~r~~~  151 (173)
T KOG4646|consen   85 LCL--DKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-----------ERDELLSPAVVRTVQRWRE  151 (173)
T ss_pred             hcc--ChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-----------hhHHhccHHHHHHHHHHHH
Confidence            998  667888889999999999999998888888887777665544333           3455556677778887777


Q ss_pred             CCCHHHHHHHHHHHHHhC
Q 009184          488 HDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       488 ~~~~~i~~~a~~il~~~~  505 (541)
                      +..-+.+..|...++++.
T Consensus       152 s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen  152 SKSHDERNLASAFLDKHV  169 (173)
T ss_pred             HhhHHHHHHHHHHHHhhc
Confidence            777777888888887664

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.24  E-value=0.00082  Score=66.33  Aligned_cols=251  Identities=26%  Similarity=0.296  Sum_probs=171.3

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..++.+++.+.+.++.++..++..+..+-.            ...++.+..++.+.+ +.++..|+.+|+.+-.  +   
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDED-PRVRDAAADALGELGD--P---  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence            367889999999999999999999765532            225899999999998 8999999998888754  2   


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCCh-----------hhHHH
Q 009184          153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK-----------LSMLR  220 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~-----------~~~~~  220 (541)
                            ..++.|+.++. +++..++..+.++|+.+-..           ..+.+++..+.....           ..++.
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                  34788889888 58999999999999987421           136677777733221           12344


Q ss_pred             HHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChh
Q 009184          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS  300 (541)
Q Consensus       221 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~  300 (541)
                      .+...+..+-.          ...++.+..++...+..++..+..+|+.+....         ..+.+.+...+.++++.
T Consensus       168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            44444443322          345677788888888888888888888877554         24557788888888899


Q ss_pred             hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc
Q 009184          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA  380 (541)
Q Consensus       301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~  380 (541)
                      ++..++..++.+-...           .+..+...+... +..++..+...+...  ...                    
T Consensus       229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~--------------------  274 (335)
T COG1413         229 VRKAALLALGEIGDEE-----------AVDALAKALEDE-DVILALLAAAALGAL--DLA--------------------  274 (335)
T ss_pred             HHHHHHHHhcccCcch-----------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cch--------------------
Confidence            9999998888765422           244566666666 555554444444311  001                    


Q ss_pred             CcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184          381 NIIGPLVALLENAEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  411 (541)
                      .....+...+.+....++..+..++..+...
T Consensus       275 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         275 EAALPLLLLLIDEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             hhHHHHHHHhhcchhhHHHHHHHHHHhhccc
Confidence            1233445555666677777777777766553

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.24  E-value=2.4e-06  Score=54.95  Aligned_cols=41  Identities=41%  Similarity=0.863  Sum_probs=38.4

Q ss_pred             ChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009184          148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (541)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  188 (541)
                      +++++..+++.|++|.|+++|.++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            47889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>TIGR02270 conserved hypothetical protein

Probab=98.22  E-value=0.00055  Score=68.31  Aligned_cols=243  Identities=17%  Similarity=0.048  Sum_probs=164.5

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      ..++.|+..|....++.+...+++++.....  +         ..+..|+..|.+.++.++..+..+|+.+-        
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------  114 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--------  114 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------
Confidence            3578888888544437777776666543211  1         12788999999999999999999998652        


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  275 (541)
                         .......|+..+ ++.++.++..++.++....           ....+.+..+|.+.++.++..++.+|+.+...  
T Consensus       115 ---~~~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       115 ---GRQAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             ---chHHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence               122466778888 7778888888886666521           22356788888899999999999999887632  


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (541)
Q Consensus       276 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (541)
                               ..++.|...+.+.++.++..|+.+++.+..  +         ..+..+....... .......+..++...
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence                     345667778899999999999999977643  2         1233445433333 333333333333333


Q ss_pred             hcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC
Q 009184          356 TAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC  435 (541)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~  435 (541)
                        +.+                    .+++.|..++.++  .++..++++++.+-..            ..++.|+..++.
T Consensus       237 --~~~--------------------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p------------~av~~L~~~l~d  280 (410)
T TIGR02270       237 --GGP--------------------DAQAWLRELLQAA--ATRREALRAVGLVGDV------------EAAPWCLEAMRE  280 (410)
T ss_pred             --Cch--------------------hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc------------chHHHHHHHhcC
Confidence              222                    2456677777654  4999999999977442            256777777763


Q ss_pred             CChHHHHHHHHHHHHHHH
Q 009184          436 PDPRIVTVCLEGLENILK  453 (541)
Q Consensus       436 ~~~~~~~~~l~~L~~l~~  453 (541)
                        +.+...+-+++..|.=
T Consensus       281 --~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       281 --PPWARLAGEAFSLITG  296 (410)
T ss_pred             --cHHHHHHHHHHHHhhC
Confidence              3488888888888863

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0033  Score=64.21  Aligned_cols=338  Identities=18%  Similarity=0.154  Sum_probs=199.0

Q ss_pred             HHHHHHhhcCCCcHH--HHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          118 VPRFVEFLLREDYPQ--LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~--i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      ...-+++|+++..++  +-+-.+.+|.   ..+.+..+.+     +..+..=|.+.++.....|+.+++|+-+..  ++.
T Consensus        76 hmEaV~LLss~kysEKqIGYl~is~L~---n~n~dl~klv-----in~iknDL~srn~~fv~LAL~~I~niG~re--~~e  145 (938)
T KOG1077|consen   76 HMEAVNLLSSNKYSEKQIGYLFISLLL---NENSDLMKLV-----INSIKNDLSSRNPTFVCLALHCIANIGSRE--MAE  145 (938)
T ss_pred             hHHHHHHhhcCCccHHHHhHHHHHHHH---hcchHHHHHH-----HHHHHhhhhcCCcHHHHHHHHHHHhhccHh--HHH
Confidence            334577787765332  3333333333   3344444443     345666677788888899999999985322  333


Q ss_pred             HHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          196 LVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      .+..  -++   ++|.. +...-+++.++.+|..|.+..|  +.....+-...++++|...+..+...+...+-.++...
T Consensus       146 a~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp--Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~  218 (938)
T KOG1077|consen  146 AFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP--DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN  218 (938)
T ss_pred             Hhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc--cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC
Confidence            3222  234   44433 3445678888888888888743  33344567788999998888888888888888887665


Q ss_pred             hHHHHHHHHhCcHHHHHHhh---C----------CCChhhHHHHHHHHhHhhcCCchhH-HHHHhcCchHHHHHhhcCCC
Q 009184          275 NDKIQAVIEAGVFPRLAEFL---M----------HPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNY  340 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL---~----------~~~~~v~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~  340 (541)
                      ++.....+. ..+..|..+.   .          -+.|-+....+++|.++-...+... ..+.  .+++.++...+...
T Consensus       219 p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~  295 (938)
T KOG1077|consen  219 PESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPP  295 (938)
T ss_pred             CHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCc
Confidence            543331111 1122222221   1          1456678888898888844333222 1221  23444444444211


Q ss_pred             ------chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCH
Q 009184          341 ------KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH  414 (541)
Q Consensus       341 ------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~  414 (541)
                            +...+...++-..+++.+-...-.           .+.  ..+..|..++.+.+..+|--|+..++.++.... 
T Consensus       296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~~-----------ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~-  361 (938)
T KOG1077|consen  296 KSKKVQHSNAKNAVLFEAISLAIHLDSEPE-----------LLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEF-  361 (938)
T ss_pred             cccchHhhhhHHHHHHHHHHHHHHcCCcHH-----------HHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccc-
Confidence                  123334444555555552111111           111  367788899999999999999999999988632 


Q ss_pred             HHHHHHHHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHH
Q 009184          415 EQIKFLVIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI  493 (541)
Q Consensus       415 ~~~~~l~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i  493 (541)
                       .... +... .+.++..|+ ..|..++..+++.|+.+.+.+.-.             .|- .+.++.|+....+-.+++
T Consensus       362 -s~da-vK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak-------------~IV-~elLqYL~tAd~sireei  424 (938)
T KOG1077|consen  362 -SIDA-VKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK-------------QIV-AELLQYLETADYSIREEI  424 (938)
T ss_pred             -hHHH-HHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH-------------HHH-HHHHHHHhhcchHHHHHH
Confidence             2222 2222 677788888 689999999999999988754321             111 344556665555555666


Q ss_pred             HHHHHHHHHHhCC
Q 009184          494 YEKSVKLLETYWL  506 (541)
Q Consensus       494 ~~~a~~il~~~~~  506 (541)
                      .-++.-+-++|-.
T Consensus       425 vlKvAILaEKyAt  437 (938)
T KOG1077|consen  425 VLKVAILAEKYAT  437 (938)
T ss_pred             HHHHHHHHHHhcC
Confidence            6666666666643

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.14  E-value=2.6e-05  Score=62.38  Aligned_cols=115  Identities=16%  Similarity=0.131  Sum_probs=99.1

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      +.+..|+.-.....+.+.+++...-|.|++. +|.+-..+.+..++..++.-|..++..+.+.++..|+|+|-+.. ..+
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHH
Confidence            3466666666655558999999999999998 57788888899999999999999999999999999999998876 677


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      .+.+.++++.++..+ .++...+...++.++..|+...
T Consensus        94 ~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   94 FIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            888999999999998 7788888899999999998876

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.14  E-value=4.6e-06  Score=53.65  Aligned_cols=40  Identities=28%  Similarity=0.574  Sum_probs=36.8

Q ss_pred             chhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      +++.+.+++.|+++.|+.+|.+. ++.++++|+|+|+||++
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            46678899999999999999988 99999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=5.4e-05  Score=76.19  Aligned_cols=221  Identities=15%  Similarity=0.153  Sum_probs=142.2

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHH---HHHHhhhcCC---CCCC
Q 009184          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT---WTLSNFCRGK---PQPP  237 (541)
Q Consensus       164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~---~~L~~l~~~~---~~~~  237 (541)
                      |..+..+.+..++.+|+.+|..+.... +..+.     ......+.+ .+.+..++..|+   |++.|.+-..   ....
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            555666666777777777766665422 12222     234455666 777888888775   5555555221   1112


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC--
Q 009184          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG--  315 (541)
Q Consensus       238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~--  315 (541)
                      ......++..+...+..-+..|+..|..+|+.+-..+.+.++..++..++..+-.--...   -+-..+..=|..++|  
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCcc
Confidence            223345566677777777888999999999988877777766666655544222111000   011122222222221  


Q ss_pred             ---------CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184          316 ---------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL  386 (541)
Q Consensus       316 ---------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L  386 (541)
                               .++....++.+|..-.++.-|.+. -.+||.+|...++.++..++....                ..+..|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~----------------~aldfL  415 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV----------------RALDFL  415 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH----------------HHHHHH
Confidence                     223345678889888999999887 789999999999999987666544                356788


Q ss_pred             HHHhhcCchhHHHHHHHHHHHhccC
Q 009184          387 VALLENAEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       387 ~~~l~~~~~~v~~~a~~aL~nl~~~  411 (541)
                      ++++.++...||..|+.+|..++..
T Consensus       416 vDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  416 VDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHH
Confidence            9999988889999999999988764

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.00018  Score=72.63  Aligned_cols=272  Identities=13%  Similarity=0.106  Sum_probs=164.8

Q ss_pred             HHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH---HhccCCh--HHHHH
Q 009184          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS---YLSDGTN--DKIQA  280 (541)
Q Consensus       206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~---~l~~~~~--~~~~~  280 (541)
                      +..+. .+.+..++..|+..+..|..+.     .....+....++++..++..|+..|+..+.   +..-.+.  +....
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 6777888888888888777643     122445667788888888999988855554   4441111  11111


Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH--hcC
Q 009184          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI--TAG  358 (541)
Q Consensus       281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl--~~~  358 (541)
                      -....++..++..+.+.++.+|..|..+||.+-.-+++.....++..++..+-..=...      +......++-  ++|
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah------krpk~l~s~GewSsG  350 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH------KRPKALYSSGEWSSG  350 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc------cchHHHHhcCCcccC
Confidence            12225788899999999999999999999999887777666666554444332221111      1111111111  111


Q ss_pred             ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCCh
Q 009184          359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP  438 (541)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~  438 (541)
                      ..-.-....+..+-....++..|.--.++.-++++=.+||..|...++.|+.. .|....     ..++.|+++++++..
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~-----~aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAV-----RALDFLVDMFNDEIE  424 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHH-----HHHHHHHHHhccHHH
Confidence            10000000000111112677888888889888888899999999999999985 333322     267899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcc--hHHHHHHH---hcCCCHHHHHHHHH
Q 009184          439 RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE--GLEKIESL---QTHDNAEIYEKSVK  499 (541)
Q Consensus       439 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~l~~L---~~~~~~~i~~~a~~  499 (541)
                      .++..++.+|..|.....-...    ..+.+...+++..  .-+.+.+|   ..-++.+..+.+..
T Consensus       425 ~VRL~ai~aL~~Is~~l~i~ee----ql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~  486 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVHLAIREE----QLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVA  486 (823)
T ss_pred             HHHHHHHHHHHHHHHHheecHH----HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            9999999999988865322111    2344555555432  22223222   34455555555543

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.0036  Score=66.50  Aligned_cols=360  Identities=16%  Similarity=0.136  Sum_probs=207.1

Q ss_pred             cCCHHHHHHhhc------CC-CcHHHHHHHHHHHHHHhcCC--hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009184          115 SGVVPRFVEFLL------RE-DYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN  185 (541)
Q Consensus       115 ~g~i~~Lv~lL~------~~-~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  185 (541)
                      .++++.+++.++      .+ +++.-+..|+++++++++--  ...-+..++.-+++.+.-.++++.--+|..|+|.++.
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            345777777777      22 24667788888988888511  1111222333345666667788899999999999999


Q ss_pred             hhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC---ChhhhhchHHHHHHhhccCChhHHHH
Q 009184          186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP---PFDQVSPALPALAHLIHSNDDEVLTD  262 (541)
Q Consensus       186 l~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~l~~L~~lL~~~d~~v~~~  262 (541)
                      ++.-.-  .+...-..++....+.|..+.+..++..|+.+|..+..+.+..   -...+.+.++.|+++.+.-+.+.+..
T Consensus       489 ~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~  566 (1010)
T KOG1991|consen  489 FSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN  566 (1010)
T ss_pred             HHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence            984332  2222223357777788866888899999999999998876433   22344666677777777666666666


Q ss_pred             HHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC---CCh---hhHHHHHHHHhHhhc---CCchhH--HHHHhcCchH
Q 009184          263 ACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH---PSP---SVLIPALRTVGNIVT---GDDMQT--QCVIEYQALP  330 (541)
Q Consensus       263 a~~~L-~~l~~~~~~~~~~~~~~g~l~~L~~lL~~---~~~---~v~~~al~~L~nl~~---~~~~~~--~~~~~~~~l~  330 (541)
                      ++..+ +..+..-......++ ..+...+.+++..   .++   .-...|.++|..+.+   .-+...  -.-++..+++
T Consensus       567 vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~  645 (1010)
T KOG1991|consen  567 VMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP  645 (1010)
T ss_pred             HHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            55544 222221111111111 1445556666653   222   223334444433322   111111  1123445677


Q ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          331 CLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       331 ~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      .+-.+|++. -.++-.+++..+.+++...++.--           .++  |+++.+.+.+.....+.-....-+|.|++.
T Consensus       646 vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp-----------~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  646 VIGFILKND-ITDFYEELLEIVSSLTFLSKEISP-----------IMW--GLLELILEVFQDDGIDYFTDMMPALHNYVT  711 (1010)
T ss_pred             HHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCH-----------HHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence            777778777 777888888888888764433211           222  578888999888888999999999999998


Q ss_pred             CCCHHHHHHHH-HcCChHHHhhhcCC---CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh
Q 009184          411 GGTHEQIKFLV-IQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ  486 (541)
Q Consensus       411 ~~~~~~~~~l~-~~~~i~~L~~lL~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~  486 (541)
                      .|.+...+.-. .+-+...+..++.+   .|.+ .+.+++.+..++-....       ....+...+.+    ..+..++
T Consensus       712 ~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d-~~~a~kLle~iiL~~kg-------~~dq~iplf~~----~a~~~l~  779 (1010)
T KOG1991|consen  712 YGTPSLLSNPDYLQILLEIIKKVLTSENGEDSD-CESACKLLEVIILNCKG-------LLDQYIPLFLE----LALSRLT  779 (1010)
T ss_pred             eCchhhhccchHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHhcC-------cHhhHhHHHHH----HHHHHHh
Confidence            87654322210 11123333444544   2333 44566777776543222       11223444432    2344444


Q ss_pred             c-CCCHHHHHHHHHHHHH
Q 009184          487 T-HDNAEIYEKSVKLLET  503 (541)
Q Consensus       487 ~-~~~~~i~~~a~~il~~  503 (541)
                      . ..+...+..+.+++-.
T Consensus       780 ~~~e~s~~~~~~leVvin  797 (1010)
T KOG1991|consen  780 REVETSELRVMLLEVVIN  797 (1010)
T ss_pred             ccccchHHHHHHHHHHHH
Confidence            3 5666667777664433

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.10  E-value=0.0013  Score=66.92  Aligned_cols=256  Identities=16%  Similarity=0.135  Sum_probs=167.2

Q ss_pred             CCcHHHHHhcCCHHHHHHhh---------cCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCC-----
Q 009184          106 SPPIEEVIRSGVVPRFVEFL---------LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP-----  171 (541)
Q Consensus       106 ~~~~~~~i~~g~i~~Lv~lL---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-----  171 (541)
                      ....+.+.....+..|..+-         ....++.+..+|+.||+|+...++..+..+++.|..+.++..|+..     
T Consensus        12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~   91 (446)
T PF10165_consen   12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ   91 (446)
T ss_pred             cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence            33455555555566666655         3333489999999999999999999999999999999999999875     


Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHhc-CChHHHHHhhc---------CC-------ChhhHHHHHHHHHHhhhcCCC
Q 009184          172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPLLAQLN---------GQ-------PKLSMLRNATWTLSNFCRGKP  234 (541)
Q Consensus       172 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-g~i~~Ll~~l~---------~~-------~~~~~~~~a~~~L~~l~~~~~  234 (541)
                      +.++.-...+.|.-++...+..+..+.+. +++..+...|.         ..       .+......++.++.|+....+
T Consensus        92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~  171 (446)
T PF10165_consen   92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP  171 (446)
T ss_pred             ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence            67888888888888887777777666644 56666666552         01       245567788888999987764


Q ss_pred             CCChhhh----hchHHHHHHhh---cc--CChhHHHHHHHHHHHhccCChHHH-----------HHHHHhCcHHHHHHhh
Q 009184          235 QPPFDQV----SPALPALAHLI---HS--NDDEVLTDACWALSYLSDGTNDKI-----------QAVIEAGVFPRLAEFL  294 (541)
Q Consensus       235 ~~~~~~~----~~~l~~L~~lL---~~--~d~~v~~~a~~~L~~l~~~~~~~~-----------~~~~~~g~l~~L~~lL  294 (541)
                      .......    ..++..+..++   .+  +.......+..+|.++--......           ........+..|+.+|
T Consensus       172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L  251 (446)
T PF10165_consen  172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL  251 (446)
T ss_pred             cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence            4332222    33444444442   11  124456777777777632111110           0011123456666665


Q ss_pred             CC-----C---ChhhHHHHHHHHhHhhcCCchhHHHHH----------------hcCchHHHHHhhcCCCchhHHHHHHH
Q 009184          295 MH-----P---SPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSGNYKKSIKKEACW  350 (541)
Q Consensus       295 ~~-----~---~~~v~~~al~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~~~~v~~~a~~  350 (541)
                      ..     .   -.....+.+.+|.+++......++.+.                ...+-..|++++.+. .+.++..+..
T Consensus       252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae  330 (446)
T PF10165_consen  252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE  330 (446)
T ss_pred             HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence            32     1   135778889999999887654443332                234567789999998 6999999999


Q ss_pred             HHHHHhcCChHH
Q 009184          351 TVSNITAGNREQ  362 (541)
Q Consensus       351 ~L~nl~~~~~~~  362 (541)
                      .+..+|..+...
T Consensus       331 llf~Lc~~d~~~  342 (446)
T PF10165_consen  331 LLFVLCKEDASR  342 (446)
T ss_pred             HHHHHHhhhHHH
Confidence            888888755543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.06  E-value=0.00025  Score=65.41  Aligned_cols=224  Identities=15%  Similarity=0.181  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHH
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVID-HGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPL  206 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-~g~i~~L  206 (541)
                      +-.+.-|+.|+.++.. .++.|..... ...-..++.++++  ...+++-..+.+++-+..... +.+.+-. ...+.-+
T Consensus       163 ~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~dli~dl  240 (432)
T COG5231         163 FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHH
Confidence            6678889999999988 4777766653 3344667777766  557888899999888875443 4433221 2246666


Q ss_pred             HHhhcCCChhhHHHHHHHHHHhhhcCCCCCCh--hhhhc-hHHHHHHhhc--cCChhHHHHHHHHHHHhccCCh------
Q 009184          207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF--DQVSP-ALPALAHLIH--SNDDEVLTDACWALSYLSDGTN------  275 (541)
Q Consensus       207 l~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~-~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~------  275 (541)
                      +.+......+.+.+.++.++.|++...|....  ....+ +.+..-.++.  ..|++++.+.-..=..+.....      
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            77776667788999999999999985543322  12233 3333333332  3456655443332222221110      


Q ss_pred             ------------------------HHHHHHHHh--CcHHHHHHhhCCCChh-hHHHHHHHHhHhhcCCchhHHHHHhcCc
Q 009184          276 ------------------------DKIQAVIEA--GVFPRLAEFLMHPSPS-VLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (541)
Q Consensus       276 ------------------------~~~~~~~~~--g~l~~L~~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~~~~~~~  328 (541)
                                              .+...+.+.  .++..|..+++..++. ...-||.-|+.++...++....+...|+
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~  400 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGV  400 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhh
Confidence                                    122223322  4677888888887666 6677899999999999988888889999


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          329 LPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      =..++.++.++ +++|+-+|..++-.+..
T Consensus       401 k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         401 KEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            99999999999 99999999998876653

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.05  E-value=0.00086  Score=66.11  Aligned_cols=238  Identities=16%  Similarity=0.131  Sum_probs=170.4

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCCchh
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQ  319 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~  319 (541)
                      ....+.+..++-+++.+++..+.+++.++..+.. ..+.+.+.++--.++.-|..+  +..-+..|++.+..+.......
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            4455555556666669999999999999986655 456677778766777777543  3456789999998887653221


Q ss_pred             HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK  399 (541)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~  399 (541)
                        ..+..+++..++.+..+. ++..+..|..+|+.++..+|+              .+...|++..|++.+.++..++..
T Consensus       103 --~~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~--------------lv~~~gG~~~L~~~l~d~~~~~~~  165 (371)
T PF14664_consen  103 --KEIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE--------------LVAECGGIRVLLRALIDGSFSISE  165 (371)
T ss_pred             --ccCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH--------------HHHHcCCHHHHHHHHHhccHhHHH
Confidence              123567888999999998 889999999999999998787              556889999999999887777888


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHc----CChHHHhhhc---CCCCh--HHHHHHHHHHHHHHHhhHhhhhcCCCCcchhh
Q 009184          400 EAAWAISNATSGGTHEQIKFLVIQ----GCIKPLCDLL---VCPDP--RIVTVCLEGLENILKVGEAEKNLGNTDVNVFT  470 (541)
Q Consensus       400 ~a~~aL~nl~~~~~~~~~~~l~~~----~~i~~L~~lL---~~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  470 (541)
                      ..+.++..+..  .|..++++...    .++.++.+.-   ...+.  +....+-.++..+++..+..-          .
T Consensus       166 ~l~~~lL~lLd--~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl----------~  233 (371)
T PF14664_consen  166 SLLDTLLYLLD--SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL----------Y  233 (371)
T ss_pred             HHHHHHHHHhC--CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee----------e
Confidence            99999999987  45556665432    2244444441   11222  355566678888887554321          1


Q ss_pred             hHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 009184          471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE  509 (541)
Q Consensus       471 ~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~  509 (541)
                      -...+..+++.|......+++++++....++-..|.-..
T Consensus       234 l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~  272 (371)
T PF14664_consen  234 LSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP  272 (371)
T ss_pred             eecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence            112334577888888889999999999998888886544

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.04  E-value=0.004  Score=65.69  Aligned_cols=141  Identities=17%  Similarity=0.134  Sum_probs=110.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .++.+++.+.+.|.+++.-.-..+......  .|  +.++-  .++.+.+=+++++ +.+|..|++.++.+=.  ++...
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~--~P--~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~  126 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKL--KP--ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG  126 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--CH--HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH
Confidence            567888888888888888888888888765  33  22221  3778888889998 9999999999988754  33332


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                           .+++.+.+++.++++.+|..|+.++.++-.-++.   .+.+.|.+..+..++ .++++.+..+|+.++..+...
T Consensus       127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                 3578899999999999999999999999866553   455666666666666 889999999999999998766

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.03  E-value=0.00019  Score=77.10  Aligned_cols=268  Identities=15%  Similarity=0.148  Sum_probs=175.7

Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC---Chh
Q 009184           75 LPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG---TSE  150 (541)
Q Consensus        75 l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~---~~~  150 (541)
                      ++.+...++. ...+.+..|+..|..+......    +..=..++|-++.++.++. .++|..|+..|+.+...   -+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d----e~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD----EVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch----HHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4555556654 5677889999999888654211    1222447999999999998 99999999999887652   122


Q ss_pred             HHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC------------------hhh-----------HHHHHhc
Q 009184          151 HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS------------------PRC-----------RDLVLSQ  200 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~------------------~~~-----------r~~i~~~  200 (541)
                      .-..+...-++|.|-.++.+ ....+|..-+.+|+.+|...                  +..           ...+.. 
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~-  577 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH-  577 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH-
Confidence            22233334567888888877 44445554455555554211                  100           001111 


Q ss_pred             CChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH
Q 009184          201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA  280 (541)
Q Consensus       201 g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~  280 (541)
                       .+...+.-|..++++-+++..+..|.-||.-....  ....-+++.|..+|...|+.++..-...+..++-.-.   ..
T Consensus       578 -~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~r  651 (1431)
T KOG1240|consen  578 -TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WR  651 (1431)
T ss_pred             -HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---ee
Confidence             13333333335566777888787787777542111  1123467888899988888888877777776653211   11


Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      -++..++|.|.+-|.++++.+...|+.++.-++...--....+.  .+++....+|-++ +.-+|..++..|..++.
T Consensus       652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            24457889999999999999999999999988865433333333  4677788899999 99999999999988876

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.02  E-value=0.0023  Score=63.82  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=87.1

Q ss_pred             HHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (541)
Q Consensus       206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  285 (541)
                      |-..+ ++.-+.+...++.+++.++...  .........+..|-.+|.+.....+-.|+++|..++...+.... ++   
T Consensus       269 L~~wl-s~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-vc---  341 (898)
T COG5240         269 LNSWL-SDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-VC---  341 (898)
T ss_pred             HHHHh-cCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-ec---
Confidence            33444 5555677777888888777654  33345677888888899999888999999999999866554322 11   


Q ss_pred             cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (541)
Q Consensus       286 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (541)
                       -+-+-+++.+.+..+...|+.+|  +-+|+++....++.  .++.+++-+.++ -..+...|...|++.
T Consensus       342 -N~evEsLIsd~Nr~IstyAITtL--LKTGt~e~idrLv~--~I~sfvhD~SD~-FKiI~ida~rsLsl~  405 (898)
T COG5240         342 -NKEVESLISDENRTISTYAITTL--LKTGTEETIDRLVN--LIPSFVHDMSDG-FKIIAIDALRSLSLL  405 (898)
T ss_pred             -ChhHHHHhhcccccchHHHHHHH--HHcCchhhHHHHHH--HHHHHHHhhccC-ceEEeHHHHHHHHhh
Confidence             23455667777877888877776  45667766665553  233444444333 233444455555444

>PF05536 Neurochondrin: Neurochondrin

Probab=98.00  E-value=0.00085  Score=69.77  Aligned_cols=239  Identities=19%  Similarity=0.172  Sum_probs=157.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHhcCChHHHHHhhcC------CChhhHHHHHHHHHHhhhc
Q 009184          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC---RDLVLSQGGLVPLLAQLNG------QPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~i~~Ll~~l~~------~~~~~~~~~a~~~L~~l~~  231 (541)
                      +...+.+|++.+.+=+-.++..+.+++...+..   +..+.+.=+..-+-++|..      .+....+.-++.+|+.+|.
T Consensus         7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~   86 (543)
T PF05536_consen    7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR   86 (543)
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence            455677888877777777888888888655532   2235554345555556632      1346678888999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  310 (541)
                      ...........+.+|.|+..+.+.+. ++..+++.+|..++..+. ..+.+++.|.++.|++.+.+ .+.....|+.++.
T Consensus        87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~  164 (543)
T PF05536_consen   87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNLLL  164 (543)
T ss_pred             ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHH
Confidence            65544555668889999999987776 999999999999995544 45778999999999999977 5567888999999


Q ss_pred             HhhcCCchhHHH---HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH-HHHHHhhchhhHHHHHhcCcHHHH
Q 009184          311 NIVTGDDMQTQC---VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQVIMHVHAFSIIAVIEANIIGPL  386 (541)
Q Consensus       311 nl~~~~~~~~~~---~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~L  386 (541)
                      +++.........   -.-..+++.+-..+... +...+-++|..|+++....+.. ..   ...+    .-+-..+...+
T Consensus       165 ~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~~~~---~~~~----~~W~~~l~~gl  236 (543)
T PF05536_consen  165 NLLSRLGQKSWAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPILPLE---SPPS----PKWLSDLRKGL  236 (543)
T ss_pred             HHHHhcchhhhhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCccccc---cCCh----hhhHHHHHHHH
Confidence            988755421100   01124556666777666 6677888999999998754211 11   0000    11122344455


Q ss_pred             HHHhhcC-chhHHHHHHHHHHHhc
Q 009184          387 VALLENA-EFDIKKEAAWAISNAT  409 (541)
Q Consensus       387 ~~~l~~~-~~~v~~~a~~aL~nl~  409 (541)
                      ..++.+. .+.-|..++.....+.
T Consensus       237 ~~iL~sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  237 RDILQSRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHH
Confidence            5556553 4455555555555544

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=0.0031  Score=61.01  Aligned_cols=240  Identities=13%  Similarity=0.146  Sum_probs=166.7

Q ss_pred             HHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC---------hhHHHHHHhCCChHH
Q 009184           93 CTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---------SEHTKVVIDHGAVPI  163 (541)
Q Consensus        93 a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~---------~~~~~~i~~~g~i~~  163 (541)
                      .++.+.-++..  +.-...+++.+.++.|+++|.+.+ .++....+..|..++..+         ..-.+.+++.++++.
T Consensus       104 ~IQ~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  104 IIQEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            34444444322  333446788999999999999998 899999999999998743         134566788899999


Q ss_pred             HHHhhCCCCH------HHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhhcCCC-C
Q 009184          164 FVKLLYSPSD------DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKP-Q  235 (541)
Q Consensus       164 L~~lL~~~~~------~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~-~  235 (541)
                      |++.+..-+.      .-...++..+-|+..-.+.+...+.+.|.+.-|+..+.. ..-......+..+++-+..+.. +
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~  260 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN  260 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence            9998865333      334566777889888888888888888888888775533 2334556777888888777653 3


Q ss_pred             CChhhhhchHHHHHHhhc----cC-----ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 009184          236 PPFDQVSPALPALAHLIH----SN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (541)
Q Consensus       236 ~~~~~~~~~l~~L~~lL~----~~-----d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al  306 (541)
                      ......-.++..++.-+.    .+     ..+...+...+|+.+..... +...+++..++....-+++. ....+..++
T Consensus       261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Sal  338 (536)
T KOG2734|consen  261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSRGSAL  338 (536)
T ss_pred             hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhhhhHH
Confidence            322222344555544432    11     24567777778877765444 45567777777776666665 556788899


Q ss_pred             HHHhHhhcCCc--hhHHHHHhcCchHHHHHhhc
Q 009184          307 RTVGNIVTGDD--MQTQCVIEYQALPCLLNLLS  337 (541)
Q Consensus       307 ~~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~  337 (541)
                      ++|-.+..+.+  .....+++..++..+..+.-
T Consensus       339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            99999998877  56667778888888877765

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.96  E-value=0.018  Score=58.39  Aligned_cols=355  Identities=16%  Similarity=0.137  Sum_probs=197.7

Q ss_pred             HHHHHhhcCCCH---HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH-
Q 009184           76 PVMVAGVWSNDS---GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-  151 (541)
Q Consensus        76 ~~l~~~L~s~~~---~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~-  151 (541)
                      |.++..|...++   ......+.+|..+...   +.+-..+-..++..+-...+...+.+....++.+|..+.....+. 
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~---~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALSTS---PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHHCC---hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            556666665443   4556777888877643   333222222455555555554444677778888888876633222 


Q ss_pred             ----HHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---------
Q 009184          152 ----TKVVIDHGAVPIFVKLLYS-----P--SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------  211 (541)
Q Consensus       152 ----~~~i~~~g~i~~L~~lL~~-----~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---------  211 (541)
                          .....+..+++.+..+...     .  +..+.+.+...+..+...-+.-++.-    .+..+..+..         
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~~  154 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPFQ  154 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCCC
Confidence                2333344477777776532     1  25666666666666665443222211    1223333221         


Q ss_pred             --CC----ChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccC--ChHHHHHHH
Q 009184          212 --GQ----PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG--TNDKIQAVI  282 (541)
Q Consensus       212 --~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~--~~~~~~~~~  282 (541)
                        ..    .......-...+++.+-   +..........+..++.+.. ..++..+..++.+++.++..  .++...   
T Consensus       155 ~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---  228 (415)
T PF12460_consen  155 PSSSTISEQQSRLVILFSAILCSLR---KDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---  228 (415)
T ss_pred             ccccccccccccHHHHHHHHHHcCC---cccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH---
Confidence              01    11111222223333332   22222234457777777755 44577888888888888754  222122   


Q ss_pred             HhCcHHHHHHhh-CCCChhhHHHHHHHHhHhh----cCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          283 EAGVFPRLAEFL-MHPSPSVLIPALRTVGNIV----TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       283 ~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~----~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                        +++..+...+ .......+..++.++..++    ...+...     ...+..|+.+|.+   +.+...|+..++-+..
T Consensus       229 --~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~---~~~g~~aA~~f~il~~  298 (415)
T PF12460_consen  229 --EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS---PELGQQAAKAFGILLS  298 (415)
T ss_pred             --HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence              2334444433 3334444555554444333    2222222     2345667888865   4678888888888887


Q ss_pred             CChHHHHHHHhhchhhHHHHHh----cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184          358 GNREQIQVIMHVHAFSIIAVIE----ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  433 (541)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~l~~----~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL  433 (541)
                      ..++...+  .+++. .-.+..    ..++|.|++.....+...+...+.||.++........... --..+++.|.+-|
T Consensus       299 d~~~~l~~--~~~a~-vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL  374 (415)
T PF12460_consen  299 DSDDVLNK--ENHAN-VKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSL  374 (415)
T ss_pred             CcHHhcCc--cccch-hhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHh
Confidence            63332110  00000 002222    2467888888877777799999999999998644332111 1135789999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHhhHh
Q 009184          434 VCPDPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       434 ~~~~~~~~~~~l~~L~~l~~~~~~  457 (541)
                      +.+|++++..++++|..++...+.
T Consensus       375 ~~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  375 SLPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCHH
Confidence            999999999999999999876543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.95  E-value=0.0021  Score=63.45  Aligned_cols=215  Identities=26%  Similarity=0.340  Sum_probs=152.2

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      ..++.+.+++.+.+ +.++..|++.++.+...           -+++.+..++.+.++.++..++.+|+.+-  .+    
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELG--DP----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence            35888999999987 99999999997776541           35799999999999999999999988762  22    


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCCh------------hHHHHH
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD------------EVLTDA  263 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~------------~v~~~a  263 (541)
                           ..++.++..+..+.+..++..+.++|..+-...          .+..++..+.....            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 157888888855789999999999999876542          25556666655442            233333


Q ss_pred             HHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchh
Q 009184          264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS  343 (541)
Q Consensus       264 ~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~  343 (541)
                      ..++..+-           +...++.+...+.+....++..|..+|+.+....         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            33333322           1235667777888888888888888888887654         23456677777777 888


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184          344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS  406 (541)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~  406 (541)
                      +|..++.+++.+-..  .                    .+..+...+...+..++..+..++.
T Consensus       229 vr~~~~~~l~~~~~~--~--------------------~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         229 VRKAALLALGEIGDE--E--------------------AVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHHhcccCcc--h--------------------hHHHHHHHHhccchHHHHHHHHHhc
Confidence            888888888877432  1                    2345666666666666666555554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.95  E-value=0.00041  Score=74.65  Aligned_cols=299  Identities=16%  Similarity=0.145  Sum_probs=182.6

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC---CChhh
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAG---DSPRC  193 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~  193 (541)
                      +++.+...+..=...+.+..|+..|..++....+..  .+ .-++|.++.++.++...+|..|+.+|..+..   +-+..
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            355555555544447888999999998887432221  11 2468999999999999999999999988753   33322


Q ss_pred             HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 009184          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (541)
Q Consensus       194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  273 (541)
                      -..+...-.+|.|-.++.++....++..-+..|..|+....  .+. ....-.....++...+.+       +.  .-..
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFl-e~~q~~~~~g~~n~~nse-------t~--~~~~  567 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFL-ELTQELRQAGMLNDPNSE-------TA--PEQN  567 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHH-HHHHHHHhcccccCcccc-------cc--cccc
Confidence            22233333556666666343445556565666666664310  000 000000111122222322       00  0011


Q ss_pred             ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184          274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (541)
Q Consensus       274 ~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (541)
                      .+...+.+.+ ++-..+..+|.++++-++...+..|+-|+..-...   --+.-+++.|+..|.+. +..+|..-...|.
T Consensus       568 ~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~  642 (1431)
T KOG1240|consen  568 YNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAFFDSIV  642 (1431)
T ss_pred             cchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHHHhhcc
Confidence            1222233333 45556677888888888888888888887532211   11234788999999998 9989887777777


Q ss_pred             HHhc--CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhh
Q 009184          354 NITA--GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD  431 (541)
Q Consensus       354 nl~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~  431 (541)
                      -++.  |...                ++..++|.|.+-|.+++.-|...|+.+|.-|+..+.-   +...-..+++...-
T Consensus       643 gvsi~VG~rs----------------~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll---~K~~v~~i~~~v~P  703 (1431)
T KOG1240|consen  643 GVSIFVGWRS----------------VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL---RKPAVKDILQDVLP  703 (1431)
T ss_pred             ceEEEEeeee----------------HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc---chHHHHHHHHhhhh
Confidence            6655  2111                2336789999999999999999999999999875432   22222234555666


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHh
Q 009184          432 LLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       432 lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      +|-.++.-++..++..|..+.+.
T Consensus       704 lL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  704 LLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             heeCchHHHHHHHHHHHHHHHhh
Confidence            77788888888888887777653

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.94  E-value=0.012  Score=58.90  Aligned_cols=242  Identities=16%  Similarity=0.133  Sum_probs=133.8

Q ss_pred             CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC---cHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184           86 DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (541)
Q Consensus        86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~---~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (541)
                      ++-.|++|+-.|..+-..      +.+    +...+++.+..+.   +.......+++...+...+++.+..+     .|
T Consensus       203 ~~isqYHalGlLyq~kr~------dkm----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----rp  267 (898)
T COG5240         203 NPISQYHALGLLYQSKRT------DKM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----RP  267 (898)
T ss_pred             ChHHHHHHHHHHHHHhcc------cHH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----HH
Confidence            455666666666654221      111    1233444444332   12333344455555555556555544     36


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhh
Q 009184          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS  242 (541)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  242 (541)
                      .|-..+++.-+.+.-.++++++.++...-  .+..+.. .+..|-.+| +++....+-.|+.+|..|+...|...    .
T Consensus       268 fL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~~-~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv----~  339 (898)
T COG5240         268 FLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFVDQ-TVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKV----S  339 (898)
T ss_pred             HHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHHH-HHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCcee----e
Confidence            67777877667777778888887774431  1222222 344455555 77788889999999999998765432    2


Q ss_pred             chHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHH
Q 009184          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC  322 (541)
Q Consensus       243 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~  322 (541)
                      -+-+.+-.++.+.+..+...|+.+|..  .+.++.+..++.  .++.++.=++++-..+...|++.|++.....   ...
T Consensus       340 vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv~--~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k---~~s  412 (898)
T COG5240         340 VCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLVN--LIPSFVHDMSDGFKIIAIDALRSLSLLFPSK---KLS  412 (898)
T ss_pred             ecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHHH--HHHHHHHhhccCceEEeHHHHHHHHhhCcHH---HHH
Confidence            233445556666677777776666533  345555554432  3444444444444556666777776654321   111


Q ss_pred             HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH
Q 009184          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ  362 (541)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  362 (541)
                           .+..|...|......+.++.+..+++.+....|+-
T Consensus       413 -----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s  447 (898)
T COG5240         413 -----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS  447 (898)
T ss_pred             -----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH
Confidence                 23445555444335667777777777776654443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.92  E-value=0.0021  Score=59.57  Aligned_cols=234  Identities=17%  Similarity=0.170  Sum_probs=150.6

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh-cCChHHHHHhhcCC-ChhhHHHHHHHHHHhhhcCCCCC-Chhh
Q 009184          164 FVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS-QGGLVPLLAQLNGQ-PKLSMLRNATWTLSNFCRGKPQP-PFDQ  240 (541)
Q Consensus       164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-~g~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~-~~~~  240 (541)
                      |-++++.-++-.+-.|+.++.++..... .|+.+.. ...-..++.++... .+.+++.+.+.+++.|+.+.... ....
T Consensus       154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K  232 (432)
T COG5231         154 LGKLSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDK  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3344444456677888999999986655 6666553 33445666666433 45788999999999998775222 2222


Q ss_pred             hhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCC---CChhhHHHHHHHHhHhhc-
Q 009184          241 VSPALPALAHLIHSN-DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH---PSPSVLIPALRTVGNIVT-  314 (541)
Q Consensus       241 ~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~~---~~~~v~~~al~~L~nl~~-  314 (541)
                      ....+.-++.+.+.. .+.|..-+|..+.++++.. .+.+....-.|-+..-++.|..   .+++++...=++=..+.. 
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence            344555566666544 5678888899999998743 2333333333434445555532   233333222111111111 


Q ss_pred             ----------------C----Cc---------hhHHHHH--hcCchHHHHHhhcCCCchh-HHHHHHHHHHHHhcCChHH
Q 009184          315 ----------------G----DD---------MQTQCVI--EYQALPCLLNLLSGNYKKS-IKKEACWTVSNITAGNREQ  362 (541)
Q Consensus       315 ----------------~----~~---------~~~~~~~--~~~~l~~L~~lL~~~~~~~-v~~~a~~~L~nl~~~~~~~  362 (541)
                                      +    ++         ...+.+.  +..++..|.++++.. .+. ...-||.-++.+.+..|+.
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~  391 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEI  391 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchH
Confidence                            0    11         1222333  235788899999988 444 5677888899999988998


Q ss_pred             HHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          363 IQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       363 ~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      ..           .+.+.|+=..+++++.+++++|+-+|+.|+..+..
T Consensus       392 ~~-----------vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         392 NA-----------VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HH-----------HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            87           78899999999999999999999999999987764

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=97.91  E-value=0.0026  Score=67.64  Aligned_cols=382  Identities=13%  Similarity=0.096  Sum_probs=245.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009184           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (541)
Q Consensus        78 l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~  157 (541)
                      .-+.-+..++.++..++.-+.++++.-    ......+++++.++++..++. ..+++.|...+.++.......- ... 
T Consensus       242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d~~-  314 (759)
T KOG0211|consen  242 VQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-DVV-  314 (759)
T ss_pred             HHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-hhh-
Confidence            333444566788888888888776542    225667889999999998887 7899999988888776321111 111 


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC--C
Q 009184          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--Q  235 (541)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~--~  235 (541)
                      ..+.+.+++...+.+..++.........++..-..   .......+++...++ +....+.+..+..-...++....  .
T Consensus       315 ~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~  390 (759)
T KOG0211|consen  315 KSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASC  390 (759)
T ss_pred             hhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCccc
Confidence            23578888888888888887776666655432111   111222466677777 55556666665555555655442  2


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 009184          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG  315 (541)
Q Consensus       236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~  315 (541)
                      ........++|.+..+..+.+..++...+.....+....+.  ...+ ....+.+...+++..+.++......+..+-..
T Consensus       391 ~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v  467 (759)
T KOG0211|consen  391 YPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEV  467 (759)
T ss_pred             ccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhc
Confidence            22233455688888888888888888877777666533221  0011 14567777788888899999988877766655


Q ss_pred             CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCch
Q 009184          316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEF  395 (541)
Q Consensus       316 ~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~  395 (541)
                      .+...........++.+..+-... ..+++.+..+.+-.++....   .           .+.+...-+.+...+.+...
T Consensus       468 ~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~-----------~~~~~~~~~l~~~~l~d~v~  532 (759)
T KOG0211|consen  468 NDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---V-----------EFFDEKLAELLRTWLPDHVY  532 (759)
T ss_pred             cCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---h-----------HHhhHHHHHHHHhhhhhhHH
Confidence            554333444556777777777666 78899999998888876322   1           33443444555555666678


Q ss_pred             hHHHHHHHHHHHhccC-CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhh
Q 009184          396 DIKKEAAWAISNATSG-GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMID  474 (541)
Q Consensus       396 ~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~  474 (541)
                      .+++.|+..+..++.. |..-.     ....++.+..+...++...+...+.++..|.....+.         .++    
T Consensus       533 ~Ir~~aa~~l~~l~~~~G~~w~-----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e---------i~~----  594 (759)
T KOG0211|consen  533 SIREAAARNLPALVETFGSEWA-----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE---------ITC----  594 (759)
T ss_pred             HHHHHHHHHhHHHHHHhCcchh-----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH---------HHH----
Confidence            9999999988888752 21111     2234556666655556667778888888776654321         123    


Q ss_pred             hcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184          475 DAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       475 ~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~  507 (541)
                       ...+..+..+..++.+.|+-.+.+.+.++-..
T Consensus       595 -~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  595 -EDLLPVFLDLVKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             -HHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence             33457788888899988888887777766543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.91  E-value=0.00024  Score=65.91  Aligned_cols=187  Identities=18%  Similarity=0.131  Sum_probs=121.1

Q ss_pred             ccCChhHHHHHHHHHHHhccCC--hHHHHHHHHh--CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCc
Q 009184          253 HSNDDEVLTDACWALSYLSDGT--NDKIQAVIEA--GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (541)
Q Consensus       253 ~~~d~~v~~~a~~~L~~l~~~~--~~~~~~~~~~--g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~  328 (541)
                      .+.+.+.+..++..|..++.+.  ......+.+.  .++..+...+.+....+...|+.++..++........... ..+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence            4568888999999998887555  2222222221  5667788888888888999999999999976665554443 467


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  408 (541)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  408 (541)
                      ++.|+..+.++ ...++..|..+|..++...+..-.            +    +++.+...+.+.++.+|..++..+..+
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~------------~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~  158 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPK------------I----LLEILSQGLKSKNPQVREECAEWLAII  158 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--H------------H----HHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHH------------H----HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            89999999998 888999999999999985441111            0    145677778888999999999999999


Q ss_pred             ccCCC--HHHHHH-HHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184          409 TSGGT--HEQIKF-LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       409 ~~~~~--~~~~~~-l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~  457 (541)
                      +....  ...... ..-..+++.+..++.+.+++++..+-.++..+....+.
T Consensus       159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            87543  111111 01134678899999999999999999999998776554

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.90  E-value=0.00016  Score=66.96  Aligned_cols=186  Identities=17%  Similarity=0.086  Sum_probs=116.3

Q ss_pred             cCCCHHHHHHHHHHHHHHHccC-CCCcHHHHHh--cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 009184           83 WSNDSGVQYECTTQFRKLLSIE-RSPPIEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (541)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~i~--~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g  159 (541)
                      .+.+++.+..|+..|+.++.+. .......+..  ..++..+...+++.. ..+...|+.++..++..-.......+ ..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence            4688999999999999998864 1122233322  145667777777776 78999999999999874433333333 24


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC-CCCh
Q 009184          160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF  238 (541)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~  238 (541)
                      ++|.|+..+.+....+++.|..+|..++...+.....     .+..+...+ .+.++.++..++..+..+....+ ....
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            6899999999999999999999999998765511111     023333344 88899999999998888877654 1111


Q ss_pred             h----hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 009184          239 D----QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND  276 (541)
Q Consensus       239 ~----~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~  276 (541)
                      .    ....+++.+.+++.+.+++|+..+-.++..+....++
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            1    2356888899999999999999988888777544333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.87  E-value=5e-05  Score=58.48  Aligned_cols=87  Identities=29%  Similarity=0.421  Sum_probs=69.1

Q ss_pred             HHHHHHhh-cCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184          118 VPRFVEFL-LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (541)
Q Consensus       118 i~~Lv~lL-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (541)
                      +|.|++.| ++++ +.++..|+++|+.+..  +         .+++.|+.+++++++.++..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57899999 5555 9999999999995532  2         24899999999999999999999999872         


Q ss_pred             HHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (541)
Q Consensus       197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~  227 (541)
                        ....++.|.+.+.++.+..++..++++|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              22378889999966667777888888774

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.87  E-value=5.3e-05  Score=58.33  Aligned_cols=87  Identities=30%  Similarity=0.484  Sum_probs=70.7

Q ss_pred             HHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHH
Q 009184          245 LPALAHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (541)
Q Consensus       245 l~~L~~lL-~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~  323 (541)
                      +|.|++.| .++++.++..++++|+.+.   .        ..+++.|..+++++++.++..|+++|+.+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---D--------PEAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---H--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---C--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57888888 7889999999999998542   1        145889999999999999999999999883          


Q ss_pred             HhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (541)
Q Consensus       324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (541)
                       +...++.|..++.++.+..+|..|+++|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             23467889999988756677999999885

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.001  Score=73.45  Aligned_cols=177  Identities=15%  Similarity=0.160  Sum_probs=111.3

Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009184          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (541)
Q Consensus       203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  282 (541)
                      ||.|.+.= .+++..++.....++..|..+...........++.-|+.-+.+....+++.+|.+|..|..+.+.  ..+.
T Consensus      1000 IPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~ 1076 (1702)
T KOG0915|consen 1000 IPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQVK 1076 (1702)
T ss_pred             hHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHH
Confidence            34444433 57788888888777777777654444556678888888888888999999999999999987552  1122


Q ss_pred             Hh--CcHHHHHHhhCCCChhhHHH---HHHHHhHhhcCC-----chhHHHHHhcCchHHHHH--hhcCCCchhHHHHHHH
Q 009184          283 EA--GVFPRLAEFLMHPSPSVLIP---ALRTVGNIVTGD-----DMQTQCVIEYQALPCLLN--LLSGNYKKSIKKEACW  350 (541)
Q Consensus       283 ~~--g~l~~L~~lL~~~~~~v~~~---al~~L~nl~~~~-----~~~~~~~~~~~~l~~L~~--lL~~~~~~~v~~~a~~  350 (541)
                      +.  .+...+.+.+++-.+.+|..   ++.+|+.++..-     ....+.++ ..++|.|+.  ++ +. -+++|+.+..
T Consensus      1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gim-s~-v~evr~~si~ 1153 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIM-SK-VNEVRRFSIG 1153 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcc-cc-hHHHHHHHHH
Confidence            21  34445555566666777766   455666655311     11112222 134444442  23 34 6789999999


Q ss_pred             HHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184          351 TVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI  397 (541)
Q Consensus       351 ~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  397 (541)
                      ++..++......+.           ... ...+|.|++.+..-++.|
T Consensus      1154 tl~dl~Kssg~~lk-----------P~~-~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELK-----------PHF-PKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred             HHHHHHHhchhhhc-----------chh-hHHHHHHHHHccccchHH
Confidence            99999986666554           222 246677777666544433

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.86  E-value=2.7e-05  Score=53.89  Aligned_cols=55  Identities=24%  Similarity=0.578  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184          342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  408 (541)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  408 (541)
                      +.+|..|+|+|++++...++..+           . ....+++.|+.+|.+++++||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~-----------~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQ-----------P-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHH-----------H-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHH-----------H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999887777766           5 3447999999999999899999999999875

...

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.073  Score=57.57  Aligned_cols=220  Identities=17%  Similarity=0.141  Sum_probs=124.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .+..+++.++..|..++-.|++.+.++.+..+..-.+.     ++...++++...+++..=..|+.+|+.++...----.
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            45566667778899999999999999987642222333     3455555555444345556888899998874311111


Q ss_pred             HHHhCCChHHHHHhhC--------CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHH
Q 009184          154 VVIDHGAVPIFVKLLY--------SPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW  224 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~--------~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~  224 (541)
                      .+.  .++|.+++.|.        +....+|+.|+++++.+++.. +.--+.++.. ....|+-.-.-+.+..+++.|..
T Consensus       417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHH
Confidence            111  23566665553        234789999999999988533 2211112211 12222221114667888999988


Q ss_pred             HHHhhhcCCCCC----Chh-----------------------hhhchHH-HHHHh----hccCChhHHHHHHHHHHHhcc
Q 009184          225 TLSNFCRGKPQP----PFD-----------------------QVSPALP-ALAHL----IHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       225 ~L~~l~~~~~~~----~~~-----------------------~~~~~l~-~L~~l----L~~~d~~v~~~a~~~L~~l~~  272 (541)
                      ++-......++.    ...                       ...+... .+-++    +.+-|..++..+.|+|..|+.
T Consensus       494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            887665432211    000                       0011122 22223    234589999999999999886


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 009184          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (541)
Q Consensus       273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a  305 (541)
                      ..++.    ...+.++.+++.....+...+.-+
T Consensus       574 ~~pk~----~a~~~L~~lld~~ls~~~~~r~g~  602 (1133)
T KOG1943|consen  574 TEPKY----LADYVLPPLLDSTLSKDASMRHGV  602 (1133)
T ss_pred             hhHHh----hcccchhhhhhhhcCCChHHhhhh
Confidence            55432    223556666665555554444433

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.78  E-value=0.0011  Score=68.01  Aligned_cols=238  Identities=19%  Similarity=0.263  Sum_probs=142.2

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (541)
                      +...|.+.|++.+++.++.-++.-|+-...++...       .+...|-..|..++.-.-+.|..++|-+--....    
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~----  482 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN----  482 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----
Confidence            45566666666555666666666655555443222       1224445555555555555555555554322211    


Q ss_pred             HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH--HhccCC
Q 009184          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS--YLSDGT  274 (541)
Q Consensus       197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~--~l~~~~  274 (541)
                         ..++.-++..-.......+.+-..-.++-...+.       ..+.=+.+-+++.+.|+-++.....++.  +...++
T Consensus       483 ---~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn  552 (929)
T KOG2062|consen  483 ---QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN  552 (929)
T ss_pred             ---HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence               0123333333333445555554443333332221       1244456677777788888877666553  322222


Q ss_pred             hHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (541)
                      .         +++..|+.. .++.+.+++..|+-+||-++..++++         ++..+.+|..++++.||.-++.+|+
T Consensus       553 n---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALG  614 (929)
T KOG2062|consen  553 N---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALG  614 (929)
T ss_pred             h---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHh
Confidence            2         556677776 57788999999999999998866644         4567778877779999999999999


Q ss_pred             HHhcCC--hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC
Q 009184          354 NITAGN--REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  413 (541)
Q Consensus       354 nl~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  413 (541)
                      -.|+++  .+.+.                 ++++|   ..++..-||+-|+.++.-+....+
T Consensus       615 IaCAGtG~~eAi~-----------------lLepl---~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  615 IACAGTGLKEAIN-----------------LLEPL---TSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             hhhcCCCcHHHHH-----------------HHhhh---hcChHHHHHHHHHHHHHHHHHhcc
Confidence            999853  33332                 23333   345566788888888888776543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.013  Score=63.13  Aligned_cols=257  Identities=14%  Similarity=0.107  Sum_probs=157.5

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCR  194 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r  194 (541)
                      +++..|.+.+++.+ ..++-.|+..++.++...|...   . ..++...+.++.. +++..-..++.+|+.++..+--.-
T Consensus       341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            56788888888888 8999999999999998665221   1 1234555665443 334455589999999986543221


Q ss_pred             HHHHhcCChHHHHHhhcC-------CChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHH-HhhccCChhHHHHHHH
Q 009184          195 DLVLSQGGLVPLLAQLNG-------QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALA-HLIHSNDDEVLTDACW  265 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~-------~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~-~lL~~~d~~v~~~a~~  265 (541)
                      ..+.  .+++.+++.|..       +....++..|+++++.+++.. +..-......+.+.|+ ..+-..+-.++..|..
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            2221  146666666621       234678999999999999886 3222222233333322 2233455667777777


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhh---CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh-hcCCCc
Q 009184          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFL---MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL-LSGNYK  341 (541)
Q Consensus       266 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL---~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~  341 (541)
                      ++.......          |-+|.=++++   +.-....+..+...+..-....+.+...++++     |+.. +.+= +
T Consensus       494 AlqE~VGR~----------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HW-d  557 (1133)
T KOG1943|consen  494 ALQENVGRQ----------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHW-D  557 (1133)
T ss_pred             HHHHHhccC----------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccc-c
Confidence            775544221          1111112222   22233445666666666666666555555442     2222 4555 8


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      ..+|..++|+|.+++...++               ....+.+++++....+.+...+.-+..+.+.++.
T Consensus       558 ~~irelaa~aL~~Ls~~~pk---------------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  558 VKIRELAAYALHKLSLTEPK---------------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHHHHhhHH---------------hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            89999999999998765444               3334788999998888888887766666666654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.048  Score=60.97  Aligned_cols=318  Identities=17%  Similarity=0.176  Sum_probs=181.7

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--h
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR--C  193 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~  193 (541)
                      .+||.|..+=-+++ +.+|..-..+...+..++....+...+ .++.-|+.-|.+....+|+.++.+|..+....+.  .
T Consensus       998 kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred             HhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence            36888888866777 888887777777777765555555543 4677777778888899999999999999976652  2


Q ss_pred             HHHHHhcCChHHHHHhhcCCChhhHHHH---HHHHHHhhhcCC-----CCCChhhhhchHHHHHHh-hccCChhHHHHHH
Q 009184          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRN---ATWTLSNFCRGK-----PQPPFDQVSPALPALAHL-IHSNDDEVLTDAC  264 (541)
Q Consensus       194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~---a~~~L~~l~~~~-----~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~  264 (541)
                      .+.+.+  ....+.+.+ ++-.+.++..   ++.+|+.+|-..     +.........++|.|+.- +-+.-++++.-++
T Consensus      1076 ~e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si 1152 (1702)
T KOG0915|consen 1076 KEKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSI 1152 (1702)
T ss_pred             HHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence            222222  344455555 4444555544   455666666332     111223334455554431 1255688999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHH-HHHHHhHh------------hcCCc--hhHHHHH-----
Q 009184          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP-ALRTVGNI------------VTGDD--MQTQCVI-----  324 (541)
Q Consensus       265 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~-al~~L~nl------------~~~~~--~~~~~~~-----  324 (541)
                      .++..++........... ..+++.|+...+.-++.+... ++++ -|+            +.+.+  +....++     
T Consensus      1153 ~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~ 1230 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDI 1230 (1702)
T ss_pred             HHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhH
Confidence            999999977665433221 256666666666555443322 3333 111            11111  0011111     


Q ss_pred             --hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHH
Q 009184          325 --EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAA  402 (541)
Q Consensus       325 --~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~  402 (541)
                        -...+|.+.+++..+-.-..|..++..++-++..-...+.           .. ....+..++..+++.+..+++.-+
T Consensus      1231 ~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-----------P~-sgKll~al~~g~~dRNesv~kafA 1298 (1702)
T KOG0915|consen 1231 SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-----------PY-SGKLLRALFPGAKDRNESVRKAFA 1298 (1702)
T ss_pred             HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-----------cc-hhHHHHHHhhccccccHHHHHHHH
Confidence              1234555555555543344455555555555431111111           10 113556666667777899999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184          403 WAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       403 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~  457 (541)
                      .|.+.++....+++.+.+++    ..+..++...++. ...++..+.+|..+...
T Consensus      1299 sAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es~-~siscatis~Ian~s~e 1348 (1702)
T KOG0915|consen 1299 SAMGYLAKFSSPDQMQKLIE----TLLADLLGKDESL-KSISCATISNIANYSQE 1348 (1702)
T ss_pred             HHHHHHHhcCChHHHHHHHH----HHHHHHhccCCCc-cchhHHHHHHHHHhhHH
Confidence            99999998888888777654    3344444433321 14455555555554433

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.69  E-value=6e-05  Score=52.10  Aligned_cols=55  Identities=27%  Similarity=0.444  Sum_probs=47.0

Q ss_pred             hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184          299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (541)
Q Consensus       299 ~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (541)
                      |.+|..|+++||+++...+..... ....+++.|..+|.++ ++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            468999999999998877766655 4457899999999988 789999999999986

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.61  E-value=0.14  Score=54.46  Aligned_cols=169  Identities=17%  Similarity=0.198  Sum_probs=127.5

Q ss_pred             hcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCCh
Q 009184           82 VWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAV  161 (541)
Q Consensus        82 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i  161 (541)
                      +.|++...+..|++.+......+ ++ .     +..+|-+++.+.+.+ .+++.-.-.-|.+++...|+..-.     ++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            56777778888886655444433 22 2     235778888888666 999999999999999987755433     36


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  241 (541)
                      +.+.+=++++++.+|..|+++++.+=  .+    .++.. +++++.+.+ .++++.+++.|+.++..+-+-++.  ....
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~----el~~~-~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~~--l~~~  164 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLR--VK----ELLGN-IIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDKD--LYHE  164 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcC--hH----HHHHH-HHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCHh--hhhc
Confidence            78888899999999999999999862  11    22222 678888888 888999999999999999876432  2233


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  273 (541)
                      .|.+..+..++...|+.+...|+.+|..+-..
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            56777788888899999999999999887644

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.61  E-value=0.014  Score=61.64  Aligned_cols=303  Identities=12%  Similarity=0.068  Sum_probs=180.6

Q ss_pred             CCCHHHHHHHHHHHHHHHccC-CCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184           84 SNDSGVQYECTTQFRKLLSIE-RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (541)
                      +..|.+...+.+.+.+..+.. .+++..    .-++...+..+.-+..+.++..|+++++..++  ++..... ..+++.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~----~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild  533 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLL----QHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILD  533 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHH----HHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHH
Confidence            455766668888888776542 112211    11345556666655557788889888888774  2222222 236778


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (541)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  241 (541)
                      .|+++....+.++......+|+..+.-+|+..... ++.+.|.++.+. ..+.|+.+...+-.++-.++... .......
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~-~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~  611 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASM-ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQ  611 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhh-hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchH
Confidence            88888888888899999999999998888765553 444666666654 35667888888888888887743 1222344


Q ss_pred             hchHHHHHHhhccCC----hhHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 009184          242 SPALPALAHLIHSND----DEVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTG  315 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~  315 (541)
                      ..++|.++..+..++    .....-++-.|.-+.++.+ ...+.++ .-++|.+.++. .+++......+-.||..+...
T Consensus       612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            678999999998765    4445555555555554433 2223233 24677777765 456677888888888888876


Q ss_pred             CchhHHHHHhcCc------hHHHHHhhcCCCchhHHHHHHHHHHHHhc----CChHHHHHHHhhchhhHHHHHhcCcHHH
Q 009184          316 DDMQTQCVIEYQA------LPCLLNLLSGNYKKSIKKEACWTVSNITA----GNREQIQVIMHVHAFSIIAVIEANIIGP  385 (541)
Q Consensus       316 ~~~~~~~~~~~~~------l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~~~~~~~~~~~~l~~~~~l~~  385 (541)
                      ..++...--+.++      +..+.++|.    ++.-..++..+|.+..    +-+..+.           ..++ .++..
T Consensus       691 ~~eq~~t~~~e~g~~~~yImqV~sqLLd----p~~sds~a~~VG~lV~tLit~a~~el~-----------~n~d-~IL~A  754 (1005)
T KOG2274|consen  691 TLEQLLTWHDEPGHNLWYIMQVLSQLLD----PETSDSAAAFVGPLVLTLITHASSELG-----------PNLD-QILRA  754 (1005)
T ss_pred             CHHHHHhhccCCCccHHHHHHHHHHHcC----CccchhHHHHHhHHHHHHHHHHHHHhc-----------hhHH-HHHHH
Confidence            6655433333332      333444443    3333444444444432    2222122           1111 13333


Q ss_pred             HHHHh-hcCchhHHHHHHHHHHHhccCC
Q 009184          386 LVALL-ENAEFDIKKEAAWAISNATSGG  412 (541)
Q Consensus       386 L~~~l-~~~~~~v~~~a~~aL~nl~~~~  412 (541)
                      ++.-| ......+-+..+.+++.++...
T Consensus       755 visrmq~ae~lsviQsLi~VfahL~~t~  782 (1005)
T KOG2274|consen  755 VISRLQQAETLSVIQSLIMVFAHLVHTD  782 (1005)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhhCC
Confidence            33333 3345777777777888777643

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.59  E-value=0.00048  Score=53.48  Aligned_cols=95  Identities=18%  Similarity=0.336  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc
Q 009184          344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  423 (541)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  423 (541)
                      .|+.+.++|+.++.+-...+.           ..++ .++++++..+.+++++||..|+.+|.|++.....+...++  .
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~-----------~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~   67 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDIS-----------KYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--N   67 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHH-----------HHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence            367788889888875444454           3333 6899999999999999999999999999875544443333  3


Q ss_pred             CChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184          424 GCIKPLCDLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       424 ~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      .+.+.|+.++.++|+.|+..+ +.|.++++
T Consensus        68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   68 EIFDALCKLSADPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence            578899999999999977654 77777764

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=0.14  Score=56.10  Aligned_cols=185  Identities=16%  Similarity=0.161  Sum_probs=111.4

Q ss_pred             hccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCc
Q 009184          252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA  328 (541)
Q Consensus       252 L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~  328 (541)
                      .++.+..++..+...|..++..+..  ......   .+...|.+-+++.....+...+.+|..|....+.....++..-+
T Consensus       663 e~~~~~~vQkK~yrlL~~l~~~~s~--~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I  740 (1176)
T KOG1248|consen  663 ENSSSTKVQKKAYRLLEELSSSPSG--EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLI  740 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3455788999999999988876321  112211   33444555556667778999999999998877633333443344


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhc-------CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184          329 LPCLLNLLSGNYKKSIKKEACWTVSNITA-------GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA  401 (541)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-------~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a  401 (541)
                      .+.++.+ +.. +...|+.|..+|..|++       ++.. ..           ..++ .+++.|...+..+...+...-
T Consensus       741 ~EvIL~~-Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~-----------~~ln-efl~~Isagl~gd~~~~~as~  805 (1176)
T KOG1248|consen  741 PEVILSL-KEV-NVKARRNAFALLVFIGAIQSSLDDGNEP-AS-----------AILN-EFLSIISAGLVGDSTRVVASD  805 (1176)
T ss_pred             HHHHHhc-ccc-cHHHHhhHHHHHHHHHHHHhhhcccccc-hH-----------HHHH-HHHHHHHhhhcccHHHHHHHH
Confidence            4455555 655 88889999999988884       1111 00           1111 233333333333333333333


Q ss_pred             HHHHHHhcc----CCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhh
Q 009184          402 AWAISNATS----GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE  458 (541)
Q Consensus       402 ~~aL~nl~~----~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~  458 (541)
                      +.++..+..    ..+.+..     .++++.++.+|.+..++++..|++.+..++...+..
T Consensus       806 Ivai~~il~e~~~~ld~~~l-----~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~  861 (1176)
T KOG1248|consen  806 IVAITHILQEFKNILDDETL-----EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE  861 (1176)
T ss_pred             HHHHHHHHHHHhccccHHHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence            555555543    1122222     346778888899999999999999998888766553

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.00063  Score=66.25  Aligned_cols=308  Identities=15%  Similarity=0.094  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCChhhHHHHHhcCChHH
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA-----GDSPRCRDLVLSQGGLVP  205 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~r~~i~~~g~i~~  205 (541)
                      ..++.++..+|..++....-.+..+++  ....+...+....+.++..+..++..+-     .+.|+..+.-...|.+-.
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~  346 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT  346 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence            357778888887777643333333322  2244444556678889998888887664     233322222122221111


Q ss_pred             ------HHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 009184          206 ------LLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI  278 (541)
Q Consensus       206 ------Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~  278 (541)
                            .-....++.....+...|.+++++.... ...+.......+-.+...-.+.+.-+...|.+++.-+.-++....
T Consensus       347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~  426 (728)
T KOG4535|consen  347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ  426 (728)
T ss_pred             HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence                  1112223344566777788888776543 111111111111122222222334467777777766665544433


Q ss_pred             HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----Cc---hhHHHHHhcCchHHHHHhhc--CCCchhHHHHHH
Q 009184          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DD---MQTQCVIEYQALPCLLNLLS--GNYKKSIKKEAC  349 (541)
Q Consensus       279 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~---~~~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~  349 (541)
                      ....-......+...+.+..-..+..+.+++|||+..    .+   .....+... .+..++..-.  +..+.+|+..+.
T Consensus       427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~nav  505 (728)
T KOG4535|consen  427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAV  505 (728)
T ss_pred             hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHH
Confidence            3333335566677777777778899999999999752    11   233333221 2222222221  222678999999


Q ss_pred             HHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 009184          350 WTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL  429 (541)
Q Consensus       350 ~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  429 (541)
                      .+|+|+..--...+.       ...-.+++......+-.....+..+|+-+||++++|+..+..-.....=....+.+.|
T Consensus       506 raLgnllQvlq~i~~-------~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L  578 (728)
T KOG4535|consen  506 RALGNLLQFLQPIEK-------PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNAL  578 (728)
T ss_pred             HHHhhHHHHHHHhhh-------ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHH
Confidence            999998642111100       0000111211111122222334679999999999999875321110000112345666


Q ss_pred             hhhcCC-CChHHHHHHHHHH
Q 009184          430 CDLLVC-PDPRIVTVCLEGL  448 (541)
Q Consensus       430 ~~lL~~-~~~~~~~~~l~~L  448 (541)
                      +.++.+ .+-+++..+..+|
T Consensus       579 ~~Lv~~~~NFKVRi~AA~aL  598 (728)
T KOG4535|consen  579 TSLVTSCKNFKVRIRAAAAL  598 (728)
T ss_pred             HHHHHHhccceEeehhhhhh
Confidence            666543 4445555554444

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.57  E-value=0.013  Score=56.97  Aligned_cols=223  Identities=13%  Similarity=0.116  Sum_probs=159.8

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccC----CCC----cHHHHHhcCCHHHHHHhhcCCC-----cHHHHHHH
Q 009184           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIE----RSP----PIEEVIRSGVVPRFVEFLLRED-----YPQLQFEA  137 (541)
Q Consensus        71 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~----~~~----~~~~~i~~g~i~~Lv~lL~~~~-----~~~i~~~a  137 (541)
                      +++.++.+++.|..++.++...++..+..+...+    ...    -++.+++.++++.|++.+..=+     ..+-...+
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            4578999999999999999999999999886532    112    2677888999999999887533     12234556


Q ss_pred             HHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc----
Q 009184          138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN----  211 (541)
Q Consensus       138 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~----  211 (541)
                      +.++-|+..-.++....+++.|.+.-|+.-+..  +-..-...|...++-+..++.+.+...-...++..+++.+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            777888888889999999988888877764432  33445566777777777777767777777788888888873    


Q ss_pred             C----CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh--HHHHHHHHhC
Q 009184          212 G----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIEAG  285 (541)
Q Consensus       212 ~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g  285 (541)
                      +    ....++.++...+|+.+.....+........+++...-+++. ....+..++.+|-++..+++  .....+++..
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            1    124567888888888887776555555556677766666654 44567778888888776655  5666677777


Q ss_pred             cHHHHHHhh
Q 009184          286 VFPRLAEFL  294 (541)
Q Consensus       286 ~l~~L~~lL  294 (541)
                      ++..+..+.
T Consensus       362 GLrtiF~~F  370 (536)
T KOG2734|consen  362 GLRTIFPLF  370 (536)
T ss_pred             hHHHHHHHH
Confidence            666666554

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.52  E-value=0.076  Score=53.94  Aligned_cols=303  Identities=16%  Similarity=0.129  Sum_probs=171.7

Q ss_pred             CHHHHHHHHHHHHHHHccCCCC----cHHHHHhcCCHHHHHHhhcCCC------cHHHHHHHHHHHHHHhcCChhHH-HH
Q 009184           86 DSGVQYECTTQFRKLLSIERSP----PIEEVIRSGVVPRFVEFLLRED------YPQLQFEAAWALTNIASGTSEHT-KV  154 (541)
Q Consensus        86 ~~~~~~~a~~~l~~l~~~~~~~----~~~~~i~~g~i~~Lv~lL~~~~------~~~i~~~a~~~L~~l~~~~~~~~-~~  154 (541)
                      +.......+..+.+++......    ......+..++|.+.++.....      ++.+...+..++..+...-+... +.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4566677777777776643222    2334445568888888764321      14555666666666665433332 22


Q ss_pred             HHhCCChHHHHH-----hhC-CCC--HHHHHHHHHHH-HHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184          155 VIDHGAVPIFVK-----LLY-SPS--DDVREQAVWAL-GNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (541)
Q Consensus       155 i~~~g~i~~L~~-----lL~-~~~--~~v~~~a~~~L-~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~  225 (541)
                      +++ .+...+..     -+. ..+  ..........+ +-+++-++.+.-. -....+..++.+.....++..+..++.+
T Consensus       136 ~~~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~  213 (415)
T PF12460_consen  136 ILD-ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQL  213 (415)
T ss_pred             HHH-HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            221 12222220     000 000  11112222222 2222222222111 1112566677776666777888888888


Q ss_pred             HHhhhcCCCCCChhhhhchHHHHHHhh-ccC----ChhHHHHHHHHHHHhc-cCChHHHHHHHHhCcHHHHHHhhCCCCh
Q 009184          226 LSNFCRGKPQPPFDQVSPALPALAHLI-HSN----DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLMHPSP  299 (541)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~----d~~v~~~a~~~L~~l~-~~~~~~~~~~~~~g~l~~L~~lL~~~~~  299 (541)
                      ++.+.-.-+...  .....+..+...+ ...    ......-..|...-+. ++++.. .     .++..|+.++.+  +
T Consensus       214 la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~lL~~--~  283 (415)
T PF12460_consen  214 LASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLELLSS--P  283 (415)
T ss_pred             HHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHHHhCC--h
Confidence            887775532222  3344555554444 222    2334455556665554 333322 1     356778888877  5


Q ss_pred             hhHHHHHHHHhHhhcCCchh--------HHHHHhc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184          300 SVLIPALRTVGNIVTGDDMQ--------TQCVIEY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM  367 (541)
Q Consensus       300 ~v~~~al~~L~nl~~~~~~~--------~~~~~~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  367 (541)
                      .+...+.+.++-+....+..        .+.+...    .++|.|+...... +...+.....+|+++..+-|..+-   
T Consensus       284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl---  359 (415)
T PF12460_consen  284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL---  359 (415)
T ss_pred             hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH---
Confidence            57888888888888763321        2222222    3566666666666 556888889999999997665443   


Q ss_pred             hhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184          368 HVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  412 (541)
Q Consensus       368 ~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  412 (541)
                              .---..++|.|++.|..++.+++..++.+|..++...
T Consensus       360 --------~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  360 --------LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             --------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence                    2222369999999999999999999999999998854

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.50  E-value=0.13  Score=55.36  Aligned_cols=383  Identities=14%  Similarity=0.096  Sum_probs=207.1

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh--C
Q 009184           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--H  158 (541)
Q Consensus        81 ~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~  158 (541)
                      .++|+.--.+-.||+.+..+.+..-..+.   .-..++....+.|..++.-.++.+|+.+|..+.+..+.....+..  .
T Consensus       470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~---~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp  546 (1010)
T KOG1991|consen  470 EFQSPYGYLRARACWVLSQFSSIDFKDPN---NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVP  546 (1010)
T ss_pred             hhcCchhHHHHHHHHHHHHHHhccCCChH---HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhh
Confidence            44565667888899999998754311111   113345666667774444789999999999998855444333322  2


Q ss_pred             CChHHHHHhhCCCCHHHHHHHH-HHHHHhhCCChhhHHHHHhcCChHHHHHhhcC----C-ChhhHHHHHHHHHHhh---
Q 009184          159 GAVPIFVKLLYSPSDDVREQAV-WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----Q-PKLSMLRNATWTLSNF---  229 (541)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~-~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~----~-~~~~~~~~a~~~L~~l---  229 (541)
                      +.+..|+.+.+.-+.+....++ ..++..+..-.++...+.. .....+++++..    + .+.+=.-.|..+|..+   
T Consensus       547 ~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Ti  625 (1010)
T KOG1991|consen  547 PIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTI  625 (1010)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Confidence            4455666666553333333333 3344444333333333322 256667777742    1 1122223333333332   


Q ss_pred             hcCC---CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 009184          230 CRGK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPAL  306 (541)
Q Consensus       230 ~~~~---~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al  306 (541)
                      ...-   |.........++|.+-.+|.+.-.++-..++..+.+++....+....+.  |+++.+.+.+............
T Consensus       626 l~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~  703 (1010)
T KOG1991|consen  626 LLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMM  703 (1010)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHH
Confidence            2221   1111223355677777778877788888888888777654432222222  6788888888888778888888


Q ss_pred             HHHhHhhcCCchh-HH-HHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcH
Q 009184          307 RTVGNIVTGDDMQ-TQ-CVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANII  383 (541)
Q Consensus       307 ~~L~nl~~~~~~~-~~-~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l  383 (541)
                      -+|.|+++..... .. .....-++..+..+|.+.. ...=...||..+.-+.-....+++                ..+
T Consensus       704 ~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~d----------------q~i  767 (1010)
T KOG1991|consen  704 PALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLD----------------QYI  767 (1010)
T ss_pred             HHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHh----------------hHh
Confidence            8999887644321 10 0011123445555565531 222234567766666542222333                134


Q ss_pred             HHHHHHh----hc--CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc--------CCCChHHHHHHHHHHH
Q 009184          384 GPLVALL----EN--AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL--------VCPDPRIVTVCLEGLE  449 (541)
Q Consensus       384 ~~L~~~l----~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL--------~~~~~~~~~~~l~~L~  449 (541)
                      |.++++.    ..  .+...+..++..+.|............|-+.|....+..+.        +..|.++   ++-+|.
T Consensus       768 plf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKl---cvL~l~  844 (1010)
T KOG1991|consen  768 PLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKL---CVLGLL  844 (1010)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHH---HHHHHH
Confidence            4444432    22  45678888888888888776667777777777755543332        2234443   333455


Q ss_pred             HHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHH
Q 009184          450 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  498 (541)
Q Consensus       450 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~  498 (541)
                      .|+..++...         ...... .+...++..|..+=-..+..+|.
T Consensus       845 tli~l~~~~~---------~~~e~l-~~l~~~lv~L~~~Lp~ala~ra~  883 (1010)
T KOG1991|consen  845 TLISLGQDPQ---------LPSEVL-GQLGPALVELLLSLPEALAERAQ  883 (1010)
T ss_pred             HHHhccccCC---------chHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666542211         111111 14456666666555555555443

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.49  E-value=0.11  Score=55.05  Aligned_cols=227  Identities=15%  Similarity=0.137  Sum_probs=152.9

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHH
Q 009184          169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPAL  248 (541)
Q Consensus       169 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L  248 (541)
                      .+..|.+.-.++|+++..+...+..... .. .++...+..+..+..+.++..++.+++..|.  +........+++..|
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~-~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L  535 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQL-LQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL  535 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhH-HH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence            4466777778999999777543322222 11 1455566666567778888889998888883  333344456778888


Q ss_pred             HHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCChhhHHHHHHHHhHhhcCCchhHHHHHhc
Q 009184          249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY  326 (541)
Q Consensus       249 ~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~  326 (541)
                      .++......++..-...+|+..+..+++.. ...++.+.|.++.+.  .+++|.+...+--++-.++.....+  --...
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~--g~m~e  612 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY--GPMQE  612 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--cchHH
Confidence            888877888999999999999998877653 356667888887775  4456766666666655554311111  11223


Q ss_pred             CchHHHHHhhcCCCc----hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHH-hhcCchhHHHHH
Q 009184          327 QALPCLLNLLSGNYK----KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL-LENAEFDIKKEA  401 (541)
Q Consensus       327 ~~l~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a  401 (541)
                      ..+|.+++.|..+ .    .....-|+..|.-+.++.+.-..           ..+-.-++|.+.+. +.++|..+-..+
T Consensus       613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~-----------~~l~~~~FpaVak~tlHsdD~~tlQ~~  680 (1005)
T KOG2274|consen  613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLP-----------NLLICYAFPAVAKITLHSDDHETLQNA  680 (1005)
T ss_pred             HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCcc-----------HHHHHHHhHHhHhheeecCChHHHHhH
Confidence            5788999999876 4    55667777888878775444343           44444677888876 456778888889


Q ss_pred             HHHHHHhccCCCH
Q 009184          402 AWAISNATSGGTH  414 (541)
Q Consensus       402 ~~aL~nl~~~~~~  414 (541)
                      ..||..++..+.+
T Consensus       681 ~EcLra~Is~~~e  693 (1005)
T KOG2274|consen  681 TECLRALISVTLE  693 (1005)
T ss_pred             HHHHHHHHhcCHH
Confidence            9999988876433

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.46  E-value=0.00087  Score=52.03  Aligned_cols=67  Identities=16%  Similarity=0.354  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHh
Q 009184          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLS  199 (541)
Q Consensus       133 i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~  199 (541)
                      ++...+.+|+|++..++...+.+.+.|++|.++....  ..+|-+++.|++++.|++..+++.++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            3567889999999999999999999999999998653  478999999999999999999988777664

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.43  E-value=0.00041  Score=44.40  Aligned_cols=39  Identities=38%  Similarity=0.758  Sum_probs=35.6

Q ss_pred             hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009184          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (541)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  187 (541)
                      ++.+..+++.|+++.|++++.+++++++..++|+|+|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346778889999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0078  Score=62.46  Aligned_cols=141  Identities=12%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             hchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184          242 SPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (541)
Q Consensus       242 ~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  320 (541)
                      ...++.|..+|..+ .-+.......++..+....++...     .++..|+.++.+..  ...-+.++|+-+....+.. 
T Consensus       390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a-  461 (865)
T KOG1078|consen  390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA-  461 (865)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC-
Confidence            34455666666542 345566666677666654443322     34566666664432  2333444444443322211 


Q ss_pred             HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE  400 (541)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~  400 (541)
                        ......+..+...+.-. +..+|.+|..+|.++..+++....                .+...|.+.+.+.|.++|..
T Consensus       462 --~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~~----------------sI~vllkRc~~D~DdevRdr  522 (865)
T KOG1078|consen  462 --PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLLP----------------SILVLLKRCLNDSDDEVRDR  522 (865)
T ss_pred             --CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCccc----------------cHHHHHHHHhcCchHHHHHH
Confidence              01122344444444445 778999999999999865444333                46667888888899999999


Q ss_pred             HHHHHHHhc
Q 009184          401 AAWAISNAT  409 (541)
Q Consensus       401 a~~aL~nl~  409 (541)
                      |..+|.++.
T Consensus       523 Atf~l~~l~  531 (865)
T KOG1078|consen  523 ATFYLKNLE  531 (865)
T ss_pred             HHHHHHHhh
Confidence            999999886

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.33  E-value=0.043  Score=49.88  Aligned_cols=243  Identities=19%  Similarity=0.263  Sum_probs=140.0

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHH
Q 009184           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF  164 (541)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  164 (541)
                      ....-++.|+..|+++....   .         +..+.+...++. .-.+.+.+++|+....           ..+++.|
T Consensus        17 ~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~-----------~~Av~~l   72 (289)
T KOG0567|consen   17 QPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQD-----------EDAVPVL   72 (289)
T ss_pred             HHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhcc-----------chhhHHH
Confidence            34456778888888776432   1         333444444433 4566677777776654           2457777


Q ss_pred             HHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC---------
Q 009184          165 VKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---------  233 (541)
Q Consensus       165 ~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~---------  233 (541)
                      +..|..  ..+-+|..|..+|+++.  .+.         ..+.+-+.. +++-..+...+..++..+-...         
T Consensus        73 ~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~  140 (289)
T KOG0567|consen   73 VEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSS  140 (289)
T ss_pred             HHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccC
Confidence            777655  45777778888888775  221         223333333 4444455555444554443221         


Q ss_pred             ------CCCChhhhhchHHHHHHhhc-cCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 009184          234 ------PQPPFDQVSPALPALAHLIH-SNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (541)
Q Consensus       234 ------~~~~~~~~~~~l~~L~~lL~-~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a  305 (541)
                            |.+.  ....-+.-+...|. .+.+.. +..+...|.++.  .++         .+..+..-+..++.-++..+
T Consensus       141 p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~~~SalfrhEv  207 (289)
T KOG0567|consen  141 PYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLADDSALFRHEV  207 (289)
T ss_pred             ccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcccchHHHHHHH
Confidence                  1111  11222333333333 233332 445555655542  222         23445556677788889999


Q ss_pred             HHHHhHhhcCCchhHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHH
Q 009184          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIG  384 (541)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  384 (541)
                      ..++|.+-+-           -.++.|.+.|.. ..++.+|.+|+.+|+.++.  ++.                    ++
T Consensus       208 AfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~~--------------------~~  254 (289)
T KOG0567|consen  208 AFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--EDC--------------------VE  254 (289)
T ss_pred             HHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HHH--------------------HH
Confidence            9999987642           235566666543 3378999999999999974  443                    34


Q ss_pred             HHHHHhhcCchhHHHHHHHHHHHhc
Q 009184          385 PLVALLENAEFDIKKEAAWAISNAT  409 (541)
Q Consensus       385 ~L~~~l~~~~~~v~~~a~~aL~nl~  409 (541)
                      .|.+++.++++-|++.+..+|--+-
T Consensus       255 vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  255 VLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            5667777777777777777776543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.019  Score=59.77  Aligned_cols=284  Identities=15%  Similarity=0.136  Sum_probs=153.4

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 009184          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  197 (541)
                      .+.+=.++.+.. ..+..+|++++.++...++....     .++..|--+++++...+|-.|.++|..+|...|..-.. 
T Consensus       247 ~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~-  319 (865)
T KOG1078|consen  247 FPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV-  319 (865)
T ss_pred             HHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc-
Confidence            344444555555 67788888888877664433221     15666667777888888888888888888665531111 


Q ss_pred             HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHH
Q 009184          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (541)
Q Consensus       198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~  277 (541)
                          +-.-|-.++ .+.+..+   +..++..|..............-++..+.=+..+..-+..++..+|+...   +. 
T Consensus       320 ----cN~elE~lI-td~NrsI---at~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~-  387 (865)
T KOG1078|consen  320 ----CNLDLESLI-TDSNRSI---ATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PR-  387 (865)
T ss_pred             ----cchhHHhhh-cccccch---hHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cH-
Confidence                111122222 2223222   22333333322211111111222222222222222234455555554432   21 


Q ss_pred             HHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184          278 IQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (541)
Q Consensus       278 ~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (541)
                          ...+.+..|-.+|.. +..+.+...+.++..++...+....     .++..|...+.+.   +...-+...|.-+.
T Consensus       388 ----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlLG  455 (865)
T KOG1078|consen  388 ----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLLG  455 (865)
T ss_pred             ----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHHh
Confidence                112445556666644 4456777777777777776655442     2344555555544   34445566666665


Q ss_pred             cCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC
Q 009184          357 AGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP  436 (541)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~  436 (541)
                      ...+..              ......+..+...+.-.+..+|..|..+|.++..+.. .     ....+.-.|.+++.+.
T Consensus       456 ~EgP~a--------------~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-~-----l~~sI~vllkRc~~D~  515 (865)
T KOG1078|consen  456 KEGPKA--------------PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-V-----LLPSILVLLKRCLNDS  515 (865)
T ss_pred             ccCCCC--------------CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-C-----ccccHHHHHHHHhcCc
Confidence            432221              1112233444444444678899999999999984321 1     1234566778899999


Q ss_pred             ChHHHHHHHHHHHHHH
Q 009184          437 DPRIVTVCLEGLENIL  452 (541)
Q Consensus       437 ~~~~~~~~l~~L~~l~  452 (541)
                      |.+++..+--.|..+.
T Consensus       516 DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  516 DDEVRDRATFYLKNLE  531 (865)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence            9999999988888776

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.31  E-value=0.021  Score=56.03  Aligned_cols=145  Identities=16%  Similarity=0.157  Sum_probs=82.9

Q ss_pred             CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc----CChH--HHHHHHhhc
Q 009184          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA----GNRE--QIQVIMHVH  370 (541)
Q Consensus       297 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~--~~~~~~~~~  370 (541)
                      .+.-++..|+++++.++-+.........-......+...+.+. ....|..++|+++||+.    +.+.  ...      
T Consensus       403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~------  475 (728)
T KOG4535|consen  403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQ------  475 (728)
T ss_pred             HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHH------
Confidence            3444777889999888876655444444445666677777766 67889999999999986    2221  111      


Q ss_pred             hhhHHHHHhcCcHHHHHHHhh---cCchhHHHHHHHHHHHhccCCCH--HHHHHHHHcCChHHHhhhc-CCCChHHHHHH
Q 009184          371 AFSIIAVIEANIIGPLVALLE---NAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLL-VCPDPRIVTVC  444 (541)
Q Consensus       371 ~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL-~~~~~~~~~~~  444 (541)
                           .-+..-.+..++....   ....+|+..+..+|+|+...-.+  +........+.+..+.... -...-+++=.+
T Consensus       476 -----eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNa  550 (728)
T KOG4535|consen  476 -----ERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNA  550 (728)
T ss_pred             -----HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHH
Confidence                 1111123344444332   23578999999999998753210  0011111222233332222 22334566677


Q ss_pred             HHHHHHHHH
Q 009184          445 LEGLENILK  453 (541)
Q Consensus       445 l~~L~~l~~  453 (541)
                      +.++.||++
T Consensus       551 Cya~gNLfk  559 (728)
T KOG4535|consen  551 CYAMGNLFK  559 (728)
T ss_pred             HHHHHHhhc
Confidence            777777775

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.032  Score=57.84  Aligned_cols=316  Identities=15%  Similarity=0.181  Sum_probs=172.8

Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhh----CCChhhHH
Q 009184          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIA----GDSPRCRD  195 (541)
Q Consensus       121 Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~----~~~~~~r~  195 (541)
                      +.+-|.+++ .+.+.+|..-+..+.......-.      ++-.+++ .|-+.+.+++. .+...+.++    .+..-..+
T Consensus        25 ik~~Lek~~-~~~KIeamK~ii~~mlnGe~~p~------Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~dgkl~~E   96 (948)
T KOG1058|consen   25 IKEKLEKGD-DEVKIEAMKKIIALMLNGEDLPS------LLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSDGKLLHE   96 (948)
T ss_pred             HHHHHhcCC-hHHHHHHHHHHHHHHHcCCCchH------HHHHHhheeeccCchHHHH-HHHHHHHHccccCCCcccHHH
Confidence            334466666 67777776544443331111111      1112222 23445666665 455555555    22222333


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  275 (541)
                      +++-   ...+-+-| +++++-++-..+..|+.|-.      .+...+.+|.+...|.+.+.-|+.+|..|+..+-...+
T Consensus        97 MILv---cna~RkDL-QHPNEyiRG~TLRFLckLkE------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~  166 (948)
T KOG1058|consen   97 MILV---CNAYRKDL-QHPNEYIRGSTLRFLCKLKE------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE  166 (948)
T ss_pred             HHHH---HHHHhhhc-cCchHhhcchhhhhhhhcCc------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh
Confidence            3332   22333444 77888888888888876633      35778899999999999999999999999887765422


Q ss_pred             HHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCC--chhHHHHHHHHH
Q 009184          276 DKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY--KKSIKKEACWTV  352 (541)
Q Consensus       276 ~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L  352 (541)
                      .    ++ .++-+.+-..| ...++.....|+..|...   .++.        ++.+|...+..-+  ++.++-.....+
T Consensus       167 ~----L~-pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~I  230 (948)
T KOG1058|consen  167 H----LI-PDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPER--------ALNYLLSNIDQIPSFNDSLQLVIVELI  230 (948)
T ss_pred             h----hc-CChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH--------HHHHHHhhHhhccCccHHHHHHHHHHH
Confidence            1    11 14445555555 445777777777655432   2221        2223333332211  344555555555


Q ss_pred             HHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhh
Q 009184          353 SNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDL  432 (541)
Q Consensus       353 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l  432 (541)
                      ...+..++....                ..+..++.+|.+.++.++-+|+.+|.+++.  ++..++.     ....++++
T Consensus       231 rkv~~~~p~~~~----------------~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~alk~-----Aa~~~i~l  287 (948)
T KOG1058|consen  231 RKVCLANPAEKA----------------RYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTALKA-----AASTYIDL  287 (948)
T ss_pred             HHHHhcCHHHhh----------------HHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHHHH-----HHHHHHHH
Confidence            555554444333                356778888888888888888888888766  3444333     23344454


Q ss_pred             cC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 009184          433 LV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE  509 (541)
Q Consensus       433 L~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~  509 (541)
                      +. .+|..+....++-|..+-...+.              .+  .|.+-.+..+.++++-++++++..|.-..-....
T Consensus       288 ~~kesdnnvklIvldrl~~l~~~~~~--------------il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN  349 (948)
T KOG1058|consen  288 LVKESDNNVKLIVLDRLSELKALHEK--------------IL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN  349 (948)
T ss_pred             HHhccCcchhhhhHHHHHHHhhhhHH--------------HH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence            43 34444444444444433311111              11  1222334445677777777777777666555444

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.29  E-value=0.063  Score=54.80  Aligned_cols=231  Identities=17%  Similarity=0.141  Sum_probs=147.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC----cHHHHHHHHHHHHHHhcCChhHHHHHHh-
Q 009184           83 WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED----YPQLQFEAAWALTNIASGTSEHTKVVID-  157 (541)
Q Consensus        83 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~i~~-  157 (541)
                      .+.++.+..+|+++|++++-.. ....+.+.+.|..+.++..|+...    ++++..-..++|.-++...++.+..+++ 
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            3567899999999999998753 333456678999999999999871    3889999999999999988888877775 


Q ss_pred             CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc--------C
Q 009184          158 HGAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------G  212 (541)
Q Consensus       158 ~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~--------~  212 (541)
                      .+++..+...|..                 .+......++.++.|+..+.+..... .....++.++.++.        .
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~-~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPE-EFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccch-hhhHHHHHHHHHHHHHhccCCCC
Confidence            4777777776521                 13455667888999998655532220 12223444444432        1


Q ss_pred             CChhhHHHHHHHHHHhhhcCC-C-----------CCChhhhhchHHHHHHhhc----cC----ChhHHHHHHHHHHHhcc
Q 009184          213 QPKLSMLRNATWTLSNFCRGK-P-----------QPPFDQVSPALPALAHLIH----SN----DDEVLTDACWALSYLSD  272 (541)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~-~-----------~~~~~~~~~~l~~L~~lL~----~~----d~~v~~~a~~~L~~l~~  272 (541)
                      .+.......+..+|.|+--.. .           ..........+..|+.+|.    ..    -.+.....+.+|..++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence            223456777888888772111 0           0000111234445555543    21    13567778888888887


Q ss_pred             CChHHHHHHHHh-----------------CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184          273 GTNDKIQAVIEA-----------------GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (541)
Q Consensus       273 ~~~~~~~~~~~~-----------------g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  316 (541)
                      .+....+ .+..                 .+-.+|++++.++.+.++..+...+-.+|..+
T Consensus       280 ~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  280 AAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             hcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            6544333 3322                 34556777887777777777777777776433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.054  Score=59.19  Aligned_cols=239  Identities=13%  Similarity=0.102  Sum_probs=150.8

Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHH
Q 009184          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLV  197 (541)
Q Consensus       121 Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i  197 (541)
                      +.....+.++..+|..+..+|..++.. +.....+.+  ..+...|..-+++.....+...+.+|..|....+ +..+.+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            333344443489999999999999985 322222211  1233455555566666777778888888875444 333333


Q ss_pred             HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh--cCC----CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC--RGK----PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (541)
Q Consensus       198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~--~~~----~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  271 (541)
                      ..  .|+.++-.+ +..+...++++..+|..++  ...    ..+....+...++.+...+-.+...+....+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  344444445 7778888999999998888  221    11224445666666666554444444444355555554


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (541)
Q Consensus       272 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (541)
                      .........-.-.++++.+..+|.+.+..++..|+..+..++..-++..-......+++.+..+++.. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            33222112122236777888888999999999999999999988775543333445888888888877 78888888888


Q ss_pred             HHHHhc-CChHHHH
Q 009184          352 VSNITA-GNREQIQ  364 (541)
Q Consensus       352 L~nl~~-~~~~~~~  364 (541)
                      |--+++ -..+.++
T Consensus       893 lekLirkfg~~eLe  906 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELE  906 (1176)
T ss_pred             HHHHHHHhCHHHHH
Confidence            888877 3444455

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.25  E-value=0.013  Score=51.75  Aligned_cols=98  Identities=23%  Similarity=0.249  Sum_probs=76.7

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh
Q 009184          256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (541)
Q Consensus       256 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  335 (541)
                      ++.++..++.+++.++...+...+     ..++.+...|.++++.+|..|+.+|..+...+-..    ....++..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHH
Confidence            577899999999999876654333     57889999999999999999999999998754311    122344778888


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcC-ChHHH
Q 009184          336 LSGNYKKSIKKEACWTVSNITAG-NREQI  363 (541)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~-~~~~~  363 (541)
                      +.++ +++|+..|..++..+... .+..+
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~~~~~~i   99 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKKRNPNII   99 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHhccchHH
Confidence            8888 999999999999999875 44433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.25  E-value=0.018  Score=62.62  Aligned_cols=163  Identities=17%  Similarity=0.175  Sum_probs=122.8

Q ss_pred             HHHHhhhcCC-CCCChhhhhchHHHHHHhhc----cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CC
Q 009184          224 WTLSNFCRGK-PQPPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HP  297 (541)
Q Consensus       224 ~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~----~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~  297 (541)
                      .++..+|... -.........+.|.+++..+    .++++++..|.-+|+.+..-+.+.    ++ .-++.|+..|. ++
T Consensus       899 d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeksp  973 (1251)
T KOG0414|consen  899 DLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKSP  973 (1251)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcCC
Confidence            3444444443 11123344667888888884    458999999999999987665543    32 45788888885 88


Q ss_pred             ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHH
Q 009184          298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAV  377 (541)
Q Consensus       298 ~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l  377 (541)
                      ++.+|..++-++|.++-.-+...+     .+-+.|...|.+. ++.+|+.|..+|+++...+.-.++             
T Consensus       974 ~p~IRsN~VvalgDlav~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiKVK------------- 1034 (1251)
T KOG0414|consen  974 SPRIRSNLVVALGDLAVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIKVK------------- 1034 (1251)
T ss_pred             Cceeeecchheccchhhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhHhc-------------
Confidence            999999999999999876664442     3456788899988 999999999999999986554444             


Q ss_pred             HhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC
Q 009184          378 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  413 (541)
Q Consensus       378 ~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  413 (541)
                         |.++.+...+.+++.+++.-|-..+..+...++
T Consensus      1035 ---Gql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1035 ---GQLSEMALCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred             ---ccHHHHHHHhcCCcHHHHHHHHHHHHHhhhccc
Confidence               899999999999999999988877777766553

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.23  E-value=0.0008  Score=43.02  Aligned_cols=37  Identities=38%  Similarity=0.726  Sum_probs=33.8

Q ss_pred             hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHh
Q 009184          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT  356 (541)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~  356 (541)
                      ....+.+.|+++.|+.++.++ ++.++..++|+|.|++
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~   40 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence            556788999999999999987 9999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.20  E-value=0.014  Score=56.48  Aligned_cols=202  Identities=13%  Similarity=0.121  Sum_probs=140.3

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-----HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~  228 (541)
                      .+...+.+..|+..|..-+.+.+..+...++++.+.....     .+.+... .-..+..++....++++.-.+...|..
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            3445578889999998888999999999999998654332     3344332 123333333344567777777777777


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCChhhHHHH
Q 009184          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPA  305 (541)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~a  305 (541)
                      .++...........+.+-.+......++-++..+|..++..+..........++..   .++.....+|.+++.-++..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            77764333333345566667777888899999999999998776655554445444   466778889999999999999


Q ss_pred             HHHHhHhhcCCchh---HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          306 LRTVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       306 l~~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      +..||.+.......   ...+-+..-+..++.+|.+. +..++.+|..++--+++
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            99999998754432   23344566788999999998 89999999999888877

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.20  E-value=0.071  Score=54.81  Aligned_cols=292  Identities=12%  Similarity=0.091  Sum_probs=150.1

Q ss_pred             HHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 009184          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL  198 (541)
Q Consensus       119 ~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~  198 (541)
                      ..++...+ ++ +..+..|+..+.......|+..+..     +..++.++.+++..||.+|+..|..+|.+.++....  
T Consensus        26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--   96 (556)
T PF05918_consen   26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--   96 (556)
T ss_dssp             HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred             HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence            34444444 34 7899999999999999888887654     678999999999999999999999999988765444  


Q ss_pred             hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHH-hccCC
Q 009184          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSY-LSDGT  274 (541)
Q Consensus       199 ~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~-l~~~~  274 (541)
                         +...|..+| .+.++.-...+-++|..+...++       .+.+..+...+.   +.++.+++.++..|.. +..-.
T Consensus        97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence               356677777 66666666677777777766532       344555555544   5678889988877643 22221


Q ss_pred             hHHHH--HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----CchhHHHHHhcCchHHHHHhh------cCCCch
Q 009184          275 NDKIQ--AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG----DDMQTQCVIEYQALPCLLNLL------SGNYKK  342 (541)
Q Consensus       275 ~~~~~--~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL------~~~~~~  342 (541)
                      .+...  .-.+.-++..+.+.|.+-...-....+.+|..+-..    .....+.+     ++.+....      ... ++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~  239 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP  239 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence            11111  122223455566677653333333444555555441    22222222     23333222      112 33


Q ss_pred             hHHHHHHHHHHH----Hhc--CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHH
Q 009184          343 SIKKEACWTVSN----ITA--GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ  416 (541)
Q Consensus       343 ~v~~~a~~~L~n----l~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~  416 (541)
                      +.......++..    +..  .+...+.           ++. ..++|.+-.+    ..+.+...+.++..++.......
T Consensus       240 e~Idrli~C~~~Alp~fs~~v~Sskfv~-----------y~~-~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d  303 (556)
T PF05918_consen  240 ESIDRLISCLRQALPFFSRGVSSSKFVN-----------YMC-EKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQD  303 (556)
T ss_dssp             HHHHHHHHHHHHHGGG-BTTB--HHHHH-----------HHH-HHTCCCTT---------HHHHHHHHHHHHHTT----T
T ss_pred             HHHHHHHHHHHHhhHHhcCCCChHHHHH-----------HHH-HHhcCChhhC----ChHHHHHHHHHHHHHcCCCCccc
Confidence            333222222222    111  1222232           333 3566655554    44677788888888887654322


Q ss_pred             HHHHHHcCChHHHhhhcC----C--CCh----HHHHHHHHHHHHHHHhhHh
Q 009184          417 IKFLVIQGCIKPLCDLLV----C--PDP----RIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       417 ~~~l~~~~~i~~L~~lL~----~--~~~----~~~~~~l~~L~~l~~~~~~  457 (541)
                      ...     .++.+.++|.    .  ..+    ..++..|.+++.|....+.
T Consensus       304 ~~~-----~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  304 ARQ-----LLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHH-----HHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHH-----HHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            222     2334433332    1  122    3577778888888776554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.19  E-value=0.015  Score=60.71  Aligned_cols=222  Identities=15%  Similarity=0.142  Sum_probs=148.9

Q ss_pred             hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCC-hhHHHHHHHHHHHhc
Q 009184          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND-DEVLTDACWALSYLS  271 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~l~  271 (541)
                      -|...+..|+...|+++. ....+........+|..    .-..........++.+...+++.. .--...++.++.||+
T Consensus       496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            344556778889999887 44455666666666661    111111222444555555554332 223567888999998


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHH
Q 009184          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACW  350 (541)
Q Consensus       272 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~  350 (541)
                      ..++...+.+++...++.+-.++..+++..+..++..+.||..++.-....+.+ ...++.....+... +.....+++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence            777766677888888888888888999999999999999999988766666666 34566666666665 7777777777


Q ss_pred             HHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 009184          351 TVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL  429 (541)
Q Consensus       351 ~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  429 (541)
                      ++..|+......+.           ... .......+..++.+++.+++...+..+.|+.. +..+....+.....+..+
T Consensus       650 a~a~I~sv~~n~c~-----------~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l  717 (748)
T KOG4151|consen  650 ALAAITSVVENHCS-----------RILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELL  717 (748)
T ss_pred             cccchhhcchhhhh-----------hHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHH
Confidence            77767664444443           211 23567788888899999999999999999544 445555555555555544


Q ss_pred             hhh
Q 009184          430 CDL  432 (541)
Q Consensus       430 ~~l  432 (541)
                      ...
T Consensus       718 ~~~  720 (748)
T KOG4151|consen  718 SGL  720 (748)
T ss_pred             HHH
Confidence            443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.19  E-value=0.017  Score=48.75  Aligned_cols=131  Identities=13%  Similarity=0.090  Sum_probs=103.8

Q ss_pred             HHHHHHhCcHHHHHHhhCCCC------hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHH
Q 009184          278 IQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACW  350 (541)
Q Consensus       278 ~~~~~~~g~l~~L~~lL~~~~------~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~  350 (541)
                      ...++..+++..|++++.++.      ..+...++.++..+..... .....+...++..+...+.... +..+...|..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            345788899999999997654      3677788888888887543 2345666778888888888664 6789999999


Q ss_pred             HHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHH
Q 009184          351 TVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL  420 (541)
Q Consensus       351 ~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l  420 (541)
                      .|-+++..++...+           .+.+.=-++.|+..|...+++++..|+..+..+...++....+.+
T Consensus        83 ILEs~Vl~S~~ly~-----------~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   83 ILESIVLNSPKLYQ-----------LVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHHhCCHHHHH-----------HHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            99999998777665           555666789999999999999999999999999887776655543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.18  E-value=0.0028  Score=49.23  Aligned_cols=92  Identities=15%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             HHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcC
Q 009184          302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEAN  381 (541)
Q Consensus       302 ~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~  381 (541)
                      |..++.+|..++.+-.......+ ..+++.++..+.+. +.+||..||.+|.|++......+-           . .-..
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l-----------~-~f~~   68 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEIL-----------P-YFNE   68 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHH-----------H-HHHH
Confidence            56677777777766655544444 36889999999999 999999999999999874333322           2 1235


Q ss_pred             cHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184          382 IIGPLVALLENAEFDIKKEAAWAISNA  408 (541)
Q Consensus       382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl  408 (541)
                      +++.|.+++.+.++.||..| ..|-++
T Consensus        69 IF~~L~kl~~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   69 IFDALCKLSADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence            88899999999999988766 444444

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.18  E-value=0.029  Score=54.17  Aligned_cols=192  Identities=20%  Similarity=0.213  Sum_probs=123.8

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHH--hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC--Ch
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--TS  149 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~--~~  149 (541)
                      .+...+..+.......|..++..+.+++...  ...+.+-  ...++..+...++.+. .+-+..|+.+++-++-.  ..
T Consensus        44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g  120 (309)
T PF05004_consen   44 KLKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAG  120 (309)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCC
Confidence            4678888888778999999999999998753  2223322  2346888888898887 56667777776666542  22


Q ss_pred             hHHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhh---CCChhhHHHHHhcCChHHHHHh--hc---------CC
Q 009184          150 EHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIA---GDSPRCRDLVLSQGGLVPLLAQ--LN---------GQ  213 (541)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~---~~~~~~r~~i~~~g~i~~Ll~~--l~---------~~  213 (541)
                      .....+++ .+.|.|.+.+...  ...+|..|+.+|+-++   +..+......++  .+..+...  +.         ..
T Consensus       121 ~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  121 EDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAE  197 (309)
T ss_pred             ccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCC
Confidence            33444443 3578888888763  4567777777777664   333222111111  22222111  11         12


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184          214 PKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (541)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  271 (541)
                      +++.+...|+.+++-|...-+... .......+|.|..+|.++|.+|+..|..+|.-+.
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            245688888877777775544322 2345778999999999999999999998887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.082  Score=54.91  Aligned_cols=280  Identities=17%  Similarity=0.127  Sum_probs=155.4

Q ss_pred             cCCHHHHHHhhcCC-------CcHHHHHHHHHHHHHHhc--CChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 009184          115 SGVVPRFVEFLLRE-------DYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGN  185 (541)
Q Consensus       115 ~g~i~~Lv~lL~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  185 (541)
                      .|+++.++..|...       +++.-.+.|++.+.++.+  ..+.....+.+.-+++.++..++++.--++..|+..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            57888899888432       124455677778877766  333444445555567777778888888899999999999


Q ss_pred             hhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC--hhhhhchHHHHHHhhccCChhHHHHH
Q 009184          186 IAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEVLTDA  263 (541)
Q Consensus       186 l~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~lL~~~d~~v~~~a  263 (541)
                      +..+   +.+..+-..+.+...+.+ ++.+..++..|+.++..+..+.....  ...+.+.++.|+.+-..-+.++...+
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v  562 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV  562 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence            8543   333333344567777778 55778888889999988887752111  11223444444444444456666665


Q ss_pred             HHHHH-HhccC----ChHHHHHHHHhCcHHHHHHhhCCCC------hhhHHHHHHHHhHhhc---C--CchhHHHHHhcC
Q 009184          264 CWALS-YLSDG----TNDKIQAVIEAGVFPRLAEFLMHPS------PSVLIPALRTVGNIVT---G--DDMQTQCVIEYQ  327 (541)
Q Consensus       264 ~~~L~-~l~~~----~~~~~~~~~~~g~l~~L~~lL~~~~------~~v~~~al~~L~nl~~---~--~~~~~~~~~~~~  327 (541)
                      +..+. +.+..    ..+....+++ .++.....++.+++      .+-+..|.++|..+.+   .  +....-.-+...
T Consensus       563 Me~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s  641 (970)
T COG5656         563 MESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS  641 (970)
T ss_pred             HHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            55542 22221    1111111111 22223333343321      1223334444433322   1  111111122334


Q ss_pred             chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc-hhHHHHHHHHHH
Q 009184          328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE-FDIKKEAAWAIS  406 (541)
Q Consensus       328 ~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~aL~  406 (541)
                      ..|.+--.|.+. -...-.+|+..+-+.+-...+ +            .-+.-|+.+.+.+++.+.. .....++.-++.
T Consensus       642 lypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I------------~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~  707 (970)
T COG5656         642 LYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-I------------EPIMWGIFELLLNLLIDEITAVYSEEVADALD  707 (970)
T ss_pred             HHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-h------------hhhhhHHHHHHHhcccccchhhhHHHHHHHHH
Confidence            455555555655 556667777777666543222 1            1122256666666666655 467888999999


Q ss_pred             HhccCCC
Q 009184          407 NATSGGT  413 (541)
Q Consensus       407 nl~~~~~  413 (541)
                      |++..|.
T Consensus       708 nfityG~  714 (970)
T COG5656         708 NFITYGK  714 (970)
T ss_pred             HHHHhCc
Confidence            9998774

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.11  E-value=0.0061  Score=64.30  Aligned_cols=186  Identities=17%  Similarity=0.137  Sum_probs=127.2

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC-------------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (541)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~  227 (541)
                      ...|+.+|+.  +++-..+..++.-+..|++.+             |+.+.. .++|.+++.+ .......+.+.+.+|+
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~-~ivP~l~~~~-~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC-DIVPILVSKF-ETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH-hhHHHHHHHh-ccCCccchhHHHHHHH
Confidence            3455666654  344455667777666665532             222222 3577888877 4556667778888888


Q ss_pred             hhhcCCCCCC-hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---hhhHH
Q 009184          228 NFCRGKPQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLI  303 (541)
Q Consensus       228 ~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~~  303 (541)
                      +...+-|... ......++|.|++.|.-+|..++..++.++.-+....+.....-++ -++|.++.+=.+++   ..+|.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHH
Confidence            8887655432 2234678888888899999999999999998877554433222222 46677777665554   57899


Q ss_pred             HHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (541)
Q Consensus       304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (541)
                      .|+.+|+.+....+...-......++..|.+.|.++ ...||++|..+=
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTR 1019 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHh
Confidence            999999999985554433445567888999999998 888999998653

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.89  E-value=0.048  Score=48.11  Aligned_cols=92  Identities=17%  Similarity=0.175  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC-ChHHHHHh
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG-GLVPLLAQ  209 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g-~i~~Ll~~  209 (541)
                      |.++..++.+++.++.-.+...+     ..++.+...|.++++.+|.+|+.+|..+...+.     +.-.| .+..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHH
Confidence            78999999999999886554443     347889999999999999999999999985432     11122 23667777


Q ss_pred             hcCCChhhHHHHHHHHHHhhhcCC
Q 009184          210 LNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      + .++++.++..|..++..+....
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKKR   94 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHhc
Confidence            7 8889999999999999998773

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.88  E-value=0.22  Score=48.44  Aligned_cols=204  Identities=13%  Similarity=0.093  Sum_probs=143.5

Q ss_pred             HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh-----HHHHHh--cCchHHHHHhhcCCCchhHHHHHHHH
Q 009184          279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ-----TQCVIE--YQALPCLLNLLSGNYKKSIKKEACWT  351 (541)
Q Consensus       279 ~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (541)
                      +.+...+++..|+..|..-+.+.+..+..+.+++.......     .+.+..  ..++..|+....   ++++-..+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence            34667799999999999989899999999999998754322     223332  234555555544   44565666666


Q ss_pred             HHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc--CChHHH
Q 009184          352 VSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--GCIKPL  429 (541)
Q Consensus       352 L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--~~i~~L  429 (541)
                      |..++.. +...+           .++....+..+++.+..++.++...|...+..+......-...++..+  ..+..+
T Consensus       147 lRec~k~-e~l~~-----------~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~  214 (335)
T PF08569_consen  147 LRECIKH-ESLAK-----------IILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY  214 (335)
T ss_dssp             HHHHTTS-HHHHH-----------HHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHhh-HHHHH-----------HHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            6666654 55566           777788888899999999999999999999998875433334444332  456788


Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184          430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       430 ~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~  505 (541)
                      ..+|.+++.=++.++++.|..|+..-....        .....+.+..-+..+-.|..++...|+--|..+..-|-
T Consensus       215 ~~Ll~s~NYvtkrqslkLL~ellldr~n~~--------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV  282 (335)
T PF08569_consen  215 NKLLESSNYVTKRQSLKLLGELLLDRSNFN--------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV  282 (335)
T ss_dssp             HHHCT-SSHHHHHHHHHHHHHHHHSGGGHH--------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             HHHccCCCeEeehhhHHHHHHHHHchhHHH--------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence            889999999899999999999986543322        24566777777888888889999999988887776443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.85  E-value=0.19  Score=45.92  Aligned_cols=224  Identities=20%  Similarity=0.271  Sum_probs=139.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      +..+.+....+.......++.++..+-            ....+|.|+..|...+ .|.++.+|+.+|+++..  +    
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~------------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~----   99 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQ------------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P----   99 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhc------------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence            445555555544445556666665542            2446888988887543 37889999999999873  2    


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---------------hhhHHHHHhcCChHHHHHhhcCCChhhH
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS---------------PRCRDLVLSQGGLVPLLAQLNGQPKLSM  218 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~---------------~~~r~~i~~~g~i~~Ll~~l~~~~~~~~  218 (541)
                           ..++.+-++.+.+-..+++.|..++..+--.+               |...   ...+-+..+-..|.+.+.+..
T Consensus       100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~  171 (289)
T KOG0567|consen  100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLF  171 (289)
T ss_pred             -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHH
Confidence                 34677777777788888888888877663110               1000   011123344444433333333


Q ss_pred             -HHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC--
Q 009184          219 -LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--  295 (541)
Q Consensus       219 -~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~--  295 (541)
                       +..+.+.|.|+-.          ...+..|..-+..++.-.+..+..+++.|-..           -.++.|.+.|.  
T Consensus       172 ~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~  230 (289)
T KOG0567|consen  172 ERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDE  230 (289)
T ss_pred             HHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhh
Confidence             2334444444322          33456666667667777889999999887432           24566666663  


Q ss_pred             CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       296 ~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      ..++-+|..|+.+||.++.           ...++.|...+.+. .+-|++.+..+|.-+-.
T Consensus       231 ~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~-~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  231 TEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDE-ERVVRESCEVALDMLEY  280 (289)
T ss_pred             hcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence            3568899999999998874           22355677778777 77777777777765544

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.83  E-value=0.0079  Score=46.76  Aligned_cols=64  Identities=19%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCChHHHH
Q 009184          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQ  364 (541)
Q Consensus       301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~  364 (541)
                      ++...+++|+|++..+....+.+.+.|+++.+++...-+ .+|-+|..|.|++.|++.++++..+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~   66 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE   66 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence            466789999999999998888999999999999876533 2789999999999999999888776

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PRK14707 hypothetical protein; Provisional

Probab=96.79  E-value=1.7  Score=51.09  Aligned_cols=382  Identities=18%  Similarity=0.124  Sum_probs=211.7

Q ss_pred             HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhc-CCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (541)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  166 (541)
                      .....+++.-+.+...  ..+.+++-.. -+..|++-++ .+++.+.+..+......++.+ +..+..+ +...|..++.
T Consensus       138 ~c~~a~a~i~~~~~~~--~~~~~~l~~~-~~~lllNafSKw~~~~~c~~aa~~la~~~~~~-d~~~~~~-~~q~ia~~lN  212 (2710)
T PRK14707        138 RCERAVARLARHLRRE--DKARQTLNAQ-NISLALNAFSKWSDNPDCQAVAPRFAALVASD-DRLRSAM-DAQGVATVLN  212 (2710)
T ss_pred             HHHHHHHHHHHHhccc--cchhhhhccc-cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-hhhhccc-chHHHHHHHH
Confidence            3444444444444432  2333333222 2334444333 344577777777777777664 3444433 4445666777


Q ss_pred             hhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh-hhcCCCCCChhhh-h
Q 009184          167 LLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN-FCRGKPQPPFDQV-S  242 (541)
Q Consensus       167 lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~-~  242 (541)
                      .++.  +++..+. +...|.....+....+..+-.. .+...++.|.+-++.....++...+.. +..+. ....... .
T Consensus       213 a~sKWp~~~~c~~-aa~~la~~l~~~~~l~~~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~l~~al~~q  289 (2710)
T PRK14707        213 ALCKWPDTPDCGN-AVSALAERLADESRLRNELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDP-GLRKALDPI  289 (2710)
T ss_pred             HHhcCCCChhHHH-HHHHHHHHHcCcHHHHHhCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-HHHHhcCHH
Confidence            7766  4455544 4444444333334455554444 466777777777777666666665553 44332 2222222 2


Q ss_pred             chHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184          243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (541)
Q Consensus       243 ~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~  321 (541)
                      .+-..|..+-+-++..+...+...|..=...+.+..+. .+.-.+...+.-| +=++..+...|...|..-....++..+
T Consensus       290 ~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~  368 (2710)
T PRK14707        290 NVTQALNALSKWADLPVCAEAAIALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK  368 (2710)
T ss_pred             HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc
Confidence            33333444445577777777776665433334433332 2223344444444 335545555555554444444444443


Q ss_pred             HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA  401 (541)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a  401 (541)
                       -++..++..+++.|+.=++..+...|+..|..=..++.+..+           .+--.|+-..|-.+-+.++..+...+
T Consensus       369 -~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~-----------~~~~Q~van~lnalsKWPd~~~C~~a  436 (2710)
T PRK14707        369 -DLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRK-----------GLDPQGVSNALNALAKWPDLPICGQA  436 (2710)
T ss_pred             -ccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhh-----------hcchhhHHHHHHHhhcCCcchhHHHH
Confidence             334556666666665533555556666665555556666665           44444554444445556888888888


Q ss_pred             HHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHH
Q 009184          402 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK  481 (541)
Q Consensus       402 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  481 (541)
                      +.+|.--+.. +.+.++.|--.++...|-.+-+++|..+...+.+.|..=+.....           .+.-|.-.+....
T Consensus       437 a~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~-----------l~~a~~~q~~~~~  504 (2710)
T PRK14707        437 VSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR-----------LRKALKPQEVVIA  504 (2710)
T ss_pred             HHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH-----------HHhhcCHHHHHHH
Confidence            8888766653 566666666667777777777899988776666655443332222           3555555666778


Q ss_pred             HHHHhcCCCHHHHHHHHHHHH
Q 009184          482 IESLQTHDNAEIYEKSVKLLE  502 (541)
Q Consensus       482 l~~L~~~~~~~i~~~a~~il~  502 (541)
                      |..|...++...+..|..-|.
T Consensus       505 L~aLSK~Pd~~~c~~A~~~lA  525 (2710)
T PRK14707        505 LHSLSKWPDTPICAEAASALA  525 (2710)
T ss_pred             HHHhhcCCCcHHHHHHHHHHH
Confidence            888888888777666554443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.78  E-value=0.082  Score=48.46  Aligned_cols=184  Identities=13%  Similarity=0.163  Sum_probs=117.1

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHH-------hhCCCC--h---hhHHHHHHHHhHhhcCCchhHHH
Q 009184          256 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAE-------FLMHPS--P---SVLIPALRTVGNIVTGDDMQTQC  322 (541)
Q Consensus       256 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~-------lL~~~~--~---~v~~~al~~L~nl~~~~~~~~~~  322 (541)
                      +++.++.|+.-|+.--+..++..-.+..+ |.+..|++       .+..+.  .   .-...|+..+.-+++ .++....
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            56667777777766555444444444444 65555543       233332  1   233455555666666 5556668


Q ss_pred             HHhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184          323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI  397 (541)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  397 (541)
                      ++++.+.-.|.+.|....    -+.+|-....+++.+.. ++++.+.           .+.+.+++|..++.++.++.-.
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~-----------fLl~tEiiplcLr~me~GselS  155 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVIS-----------FLLQTEIIPLCLRIMEFGSELS  155 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHH-----------HHHCTTHHHHHHHHHHHS-HHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHH-----------HHHhhchHHHHHHHHHhccHHH
Confidence            899999888888887652    24688888999999988 5777888           8889999999999999999889


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHc--------CChHHHh-hhcCCCChHHHHHHHHHHHHHHH
Q 009184          398 KKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPLC-DLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~~L~-~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      |..|...+..+..  +.....++++.        .++..++ .+.+.+++.+...++.+...|.+
T Consensus       156 KtvAtfIlqKIL~--dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd  218 (262)
T PF04078_consen  156 KTVATFILQKILL--DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD  218 (262)
T ss_dssp             HHHHHHHHHHHHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHc--chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            9999999999987  34555554321        1222222 23345667777777777666654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.25  Score=51.42  Aligned_cols=169  Identities=18%  Similarity=0.187  Sum_probs=106.5

Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM  367 (541)
Q Consensus       288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  367 (541)
                      +.+-+++.+.++-+|.....+++---.+..       +.+++..|++.--++.+.+||+.|..+|+-++..+++++-   
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~---  591 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLP---  591 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhhch---
Confidence            445566677777777776655543222221       1345666777644444889999999999999998887654   


Q ss_pred             hhchhhHHHHHhcCcHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHH
Q 009184          368 HVHAFSIIAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE  446 (541)
Q Consensus       368 ~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~  446 (541)
                                       ..+.+|. +.++.||.-++.+|+-.+.+.....        ++..|-.+.+++..-|+..++-
T Consensus       592 -----------------s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlI  646 (929)
T KOG2062|consen  592 -----------------STVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALI  646 (929)
T ss_pred             -----------------HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHH
Confidence                             3445554 4589999999999998887542211        3444444555555567888888


Q ss_pred             HHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009184          447 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  503 (541)
Q Consensus       447 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~  503 (541)
                      ++..|+.-....       .++-.     .|+.+.++.+....+++.-.+--.||..
T Consensus       647 a~amIm~Q~t~~-------~~pkv-----~~frk~l~kvI~dKhEd~~aK~GAilAq  691 (929)
T KOG2062|consen  647 ALAMIMIQQTEQ-------LCPKV-----NGFRKQLEKVINDKHEDGMAKFGAILAQ  691 (929)
T ss_pred             HHHHHHHhcccc-------cCchH-----HHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            887776432221       11112     2334667777777777776666666654

>PRK14707 hypothetical protein; Provisional

Probab=96.70  E-value=2  Score=50.54  Aligned_cols=402  Identities=16%  Similarity=0.096  Sum_probs=215.6

Q ss_pred             CHHHHHHhhcC--CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           74 NLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        74 ~l~~l~~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      .+..+++.+..  ++...+..+.. |...+..+ ....+.+-..|+...|-.+-+.+++++.+..+...-..++. .+..
T Consensus       164 ~~~lllNafSKw~~~~~c~~aa~~-la~~~~~~-d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        164 NISLALNAFSKWSDNPDCQAVAPR-FAALVASD-DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             cHHHHHHHhhcCCCCchHHHHHHH-HHHHhcCC-hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            34555665553  44444444444 44444332 23333443344444444455566657777655555555555 3444


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      +..+ +...+...+..|+. ++.....++..+|..=..+.+..++.+-.. .+.-.++-|.+-++..+...+...|..=.
T Consensus       241 ~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl  318 (2710)
T PRK14707        241 RNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL  318 (2710)
T ss_pred             HHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence            4333 33345556666655 555555555555544333555565554433 35556666667777777776666655433


Q ss_pred             cCCCCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHH
Q 009184          231 RGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRT  308 (541)
Q Consensus       231 ~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~  308 (541)
                      .+++....... .++-..|..+-+-+|..+...+..+|..=...+++..+.+- ...+..++.-| +=++......|...
T Consensus       319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            33332222222 33333344444456777777777777544334444434332 33445555555 33555555555555


Q ss_pred             HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA  388 (541)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~  388 (541)
                      |..-..+..+.. .-++...+..+++.|..=++..+...++..|.--..++.+..+           .+--.++...|--
T Consensus       398 LA~~l~~d~~l~-~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~-----------~~~p~~va~~Lna  465 (2710)
T PRK14707        398 LAEHVVDDLELR-KGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCK-----------ALDPINVTQALDA  465 (2710)
T ss_pred             HHHHhccChhhh-hhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHh-----------hcChHHHHHHHHH
Confidence            554444455554 3445566666666666543666666777766666666677665           4444454444444


Q ss_pred             HhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH-HHHHHHHHHhhHhhhhcCCCCcc
Q 009184          389 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC-LEGLENILKVGEAEKNLGNTDVN  467 (541)
Q Consensus       389 ~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~-l~~L~~l~~~~~~~~~~~~~~~~  467 (541)
                      +-+.+|..+...++..|..=+.. +++..+.|--+++...|-.+-+.+|......+ .++-..+..-. .          
T Consensus       466 lSKWPd~p~c~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-~----------  533 (2710)
T PRK14707        466 LSKWPDTPICGQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-Q----------  533 (2710)
T ss_pred             hhcCCCChhHHHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-h----------
Confidence            44567877877777777655443 45566666556677777777777775533322 23333333111 1          


Q ss_pred             hhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          468 VFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       468 ~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                       ....|..-+....+..|..+++.+....+..-|...+.
T Consensus       534 -l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~  571 (2710)
T PRK14707        534 -LRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLA  571 (2710)
T ss_pred             -hhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhh
Confidence             23333334445556667777777777777666665543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.70  E-value=0.3  Score=44.06  Aligned_cols=153  Identities=16%  Similarity=0.225  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-----CChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHH
Q 009184          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCL  332 (541)
Q Consensus       259 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L  332 (541)
                      -..+++..+..++.+++. ...++++.+--.+..+|..     +.+.+|..+++.||.++..++ +....++..+++|..
T Consensus        95 RVcnaL~LlQcvASHpdT-r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   95 RVCNALALLQCVASHPDT-RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             hHHHHHHHHHHHhcCcch-HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            345555555556665554 4568888887788888854     346689999999999998766 455567789999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh-hchhhHHHHHhcCcHHHH-HHHhhcCchhHHHHHHHHHHHhcc
Q 009184          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH-VHAFSIIAVIEANIIGPL-VALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~L-~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      ++.+..+ +...+..|.+++.-|...+. ...|+=. .+-|..   +. .++..+ .++.+.+++.+-+.++.+..+++.
T Consensus       174 Lrime~G-SelSKtvA~fIlqKIlldD~-GL~YiCqt~eRF~a---v~-~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  174 LRIMESG-SELSKTVATFILQKILLDDV-GLYYICQTAERFSA---VA-LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHHHhhccc-cHHHHHHhHHHHHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            9999999 88889999999998887433 2221100 112211   11 123333 334455789999999999999987


Q ss_pred             CCCHHHHHHH
Q 009184          411 GGTHEQIKFL  420 (541)
Q Consensus       411 ~~~~~~~~~l  420 (541)
                        ++..+..|
T Consensus       248 --nprar~aL  255 (293)
T KOG3036|consen  248 --NPRARAAL  255 (293)
T ss_pred             --CHHHHHHH
Confidence              44444433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.70  E-value=0.84  Score=47.19  Aligned_cols=179  Identities=16%  Similarity=0.172  Sum_probs=109.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.+..++...+ ++...+..|++.|.+.....  |...    ..++..++++..+.+ ..+|.+|+..|-.+|.++++..
T Consensus        23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~F--P~l~----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v   94 (556)
T PF05918_consen   23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHF--PDLQ----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHV   94 (556)
T ss_dssp             HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC---GGGH----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-H
T ss_pred             HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC--hhhH----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHH
Confidence            35567777766 47889999999999998764  3322    225888999999988 9999999999999999888887


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc--CCChhhHHHHHHHHHHhhh
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--GQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~--~~~~~~~~~~a~~~L~~l~  230 (541)
                      ..+.     ..|+++|.++++.-...+-++|..+...++.        +.+..++..+.  ...++.+++.++..|..-.
T Consensus        95 ~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl  161 (556)
T PF05918_consen   95 SKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKL  161 (556)
T ss_dssp             HHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred             hHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence            7664     7899999998888888888888887644442        23455555553  2457778888887775433


Q ss_pred             cCC-C-C--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184          231 RGK-P-Q--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       231 ~~~-~-~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  272 (541)
                      ..- + .  +..+...-++..+.+.|.+-..+--.-....|..+-.
T Consensus       162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             GGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             hhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            322 1 1  1133444555666666654222222333445555543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.69  E-value=1.6  Score=49.47  Aligned_cols=146  Identities=10%  Similarity=0.092  Sum_probs=98.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      -+..++..|..+...+|-.|+++|..+...++.--.+.-++.++...+    .++. ..+++.|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~----~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL----NDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh----ccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            356667777777889999999999999875321112333344444333    3344 79999999999988776666655


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      ...     ..+..-+.++...||..++..+..+|...|.+-... +  +...++... .++...++..++.++.++-...
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-~--~cakmlrRv-~DEEg~I~kLv~etf~klWF~p  962 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-D--MCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP  962 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-H--HHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence            444     334555556788999999999999998877643221 1  233333333 3444558999999999988776

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.59  E-value=0.02  Score=60.63  Aligned_cols=191  Identities=18%  Similarity=0.144  Sum_probs=129.1

Q ss_pred             ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC-------------ChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 009184          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-------------PFDQVSPALPALAHLIHSNDDEVLTDACWALS  268 (541)
Q Consensus       202 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  268 (541)
                      +...++..|.   ++++-..+..+++-+..+.+..             .......++|.++..+.+.+...+..-+.+|+
T Consensus       816 ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  816 IAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence            3455666662   2444455555555554443110             11223678899999988777778888888998


Q ss_pred             HhccCChHHHHHHHH--hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCc--hhH
Q 009184          269 YLSDGTNDKIQAVIE--AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK--KSI  344 (541)
Q Consensus       269 ~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~--~~v  344 (541)
                      ++..+-+.  +.+..  ..++|.|++.|+-++..++..++.++.-+..........-+ ..++|.++.+=.+..+  ..+
T Consensus       893 hVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~V  969 (1030)
T KOG1967|consen  893 HVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVV  969 (1030)
T ss_pred             HHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHH
Confidence            88776554  22322  26788888999999999999999999888765554332222 3467777776665522  579


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhc
Q 009184          345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNAT  409 (541)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~  409 (541)
                      |..|..+|..++..-|...-           .-....++..|+..|.++..-||++|..+=.+..
T Consensus       970 R~~ALqcL~aL~~~~P~~~l-----------~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  970 REDALQCLNALTRRLPTKSL-----------LSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHHHhccCCCccc-----------ccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            99999999999983333222           3344578888999998888899999988755543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.55  E-value=0.19  Score=52.10  Aligned_cols=109  Identities=20%  Similarity=0.208  Sum_probs=80.9

Q ss_pred             hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch
Q 009184          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (541)
Q Consensus       239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  318 (541)
                      ..+.+.+-.++....+++..|+..+|..|..+...... +...+-.++...+..-+.+..+.+|..|+.+|+.+=..+..
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d  159 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD  159 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence            35677777777878889999999999999999874332 22233347777888888899999999999999998632211


Q ss_pred             hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHH
Q 009184          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS  353 (541)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~  353 (541)
                      .     +..+...+..+++++++++||..|...+.
T Consensus       160 e-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  160 E-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             C-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            1     23466778889988879999998765444

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.52  E-value=2.1  Score=48.61  Aligned_cols=237  Identities=16%  Similarity=0.131  Sum_probs=130.0

Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh---CCC--------ChhhHHHHHHH
Q 009184          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL---MHP--------SPSVLIPALRT  308 (541)
Q Consensus       240 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL---~~~--------~~~v~~~al~~  308 (541)
                      ....+=..|.+++-.........|..|++.++..-......+.  .++....+.|   ++.        ........+.+
T Consensus      1118 fL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~--~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsift 1195 (1692)
T KOG1020|consen 1118 FLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVK--ACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFT 1195 (1692)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHH--HHHHHHHHHHHHHHhccccccchhhhHHHHHHHHH
Confidence            3344444555555555556666777777777653111111111  1222232222   222        22345667888


Q ss_pred             HhHhhcCCc---------h--hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHH
Q 009184          309 VGNIVTGDD---------M--QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAV  377 (541)
Q Consensus       309 L~nl~~~~~---------~--~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l  377 (541)
                      +|-++.+.+         .  +....+..+++..|.-..+.. +..+|..|+..++.+|...+.              ++
T Consensus      1196 lG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~-~~~lR~~al~~Lg~~ci~hp~--------------l~ 1260 (1692)
T KOG1020|consen 1196 LGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDK-DGELRRKALINLGFICIQHPS--------------LF 1260 (1692)
T ss_pred             HHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHhhCch--------------hh
Confidence            888886321         0  011234456777777777777 889999999999999985554              33


Q ss_pred             HhcCcHHHHHHHhhcCchhH--HHHHHHHHHHhccC---------------CCHHHHHHHH-------HcCC--------
Q 009184          378 IEANIIGPLVALLENAEFDI--KKEAAWAISNATSG---------------GTHEQIKFLV-------IQGC--------  425 (541)
Q Consensus       378 ~~~~~l~~L~~~l~~~~~~v--~~~a~~aL~nl~~~---------------~~~~~~~~l~-------~~~~--------  425 (541)
                      ....+...+...+.+.....  +..++..+.-+...               ...+..+.+.       ..|+        
T Consensus      1261 ~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlf 1340 (1692)
T KOG1020|consen 1261 TSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLF 1340 (1692)
T ss_pred             hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHH
Confidence            34444455555555432222  22222222222210               0122222222       1112        


Q ss_pred             hHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184          426 IKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       426 i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~  505 (541)
                      ++.+.+..-+.|..++..+++.+..+++-|-         .+|..       .+..|..|..++.+.++++|..++...+
T Consensus      1341 l~~ILe~cl~~d~~~r~~aikvl~liL~QGL---------VhP~~-------cvPtLIAL~Tdp~~~~r~~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1341 LDNILESCLDRDLQVRLVAIKVLKLILNQGL---------VHPVH-------CVPTLIALETDPSQAIRHVADELLKEID 1404 (1692)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHccC---------CCccc-------hhhhheeecCChHHHHHHHHHHHHHHHH
Confidence            2222222234677888899999988887552         22222       3677888889999999999999998877


Q ss_pred             CCCC
Q 009184          506 LDDE  509 (541)
Q Consensus       506 ~~~~  509 (541)
                      .-++
T Consensus      1405 ~kY~ 1408 (1692)
T KOG1020|consen 1405 EKYE 1408 (1692)
T ss_pred             HhhH
Confidence            6544

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.51  E-value=0.0066  Score=48.50  Aligned_cols=73  Identities=14%  Similarity=0.202  Sum_probs=60.9

Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS  406 (541)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~  406 (541)
                      .++..|+.+|..+.++.+..-||.-|+.++..-|....           .+-+.|+-..+++++.+++++|+.+|+.|+.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~-----------ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ  111 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN-----------IIEKLGAKERVMELMNHEDPEVRYEALLAVQ  111 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH-----------HHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH-----------HHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            46788999996655888889999999999997787776           6668899999999999999999999999998


Q ss_pred             Hhcc
Q 009184          407 NATS  410 (541)
Q Consensus       407 nl~~  410 (541)
                      .+..
T Consensus       112 klm~  115 (119)
T PF11698_consen  112 KLMV  115 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.09  Score=52.90  Aligned_cols=151  Identities=17%  Similarity=0.213  Sum_probs=99.4

Q ss_pred             HHHHhhccCChhHHHHHHHHHHH--hccCChHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCCchhHHHH
Q 009184          247 ALAHLIHSNDDEVLTDACWALSY--LSDGTNDKIQAVIEAGVFPRLAEF-LMHPSPSVLIPALRTVGNIVTGDDMQTQCV  323 (541)
Q Consensus       247 ~L~~lL~~~d~~v~~~a~~~L~~--l~~~~~~~~~~~~~~g~l~~L~~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~~  323 (541)
                      .+.+++.+.|+-.+.....++..  ...++         .|++..++.. .++.+.+++..|+-+||-++....      
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------  584 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------  584 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence            55666766777677666555432  22222         2567777777 677889999999999998886443      


Q ss_pred             HhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHH
Q 009184          324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAW  403 (541)
Q Consensus       324 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~  403 (541)
                         ..+...+.+|..+.++.||...+.+|+-.|+++-.+..                  +..|-.++.+...-||+.|+.
T Consensus       585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a------------------~diL~~L~~D~~dfVRQ~AmI  643 (926)
T COG5116         585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVA------------------TDILEALMYDTNDFVRQSAMI  643 (926)
T ss_pred             ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHH------------------HHHHHHHhhCcHHHHHHHHHH
Confidence               34556677777776899999999999998886554332                  233444456667788999999


Q ss_pred             HHHHhccCCCHHHHHHHHHcCChHHHhhhcCC
Q 009184          404 AISNATSGGTHEQIKFLVIQGCIKPLCDLLVC  435 (541)
Q Consensus       404 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~  435 (541)
                      +++-+...++++.-...  .++++.+.+++..
T Consensus       644 a~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~  673 (926)
T COG5116         644 AVGMILMQCNPELNPNV--KRIIKKFNRVIVD  673 (926)
T ss_pred             HHHHHHhhcCcccChhH--HHHHHHHHHHHhh
Confidence            99988876654322111  2344455554443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.47  E-value=0.13  Score=43.46  Aligned_cols=126  Identities=13%  Similarity=0.103  Sum_probs=97.4

Q ss_pred             hHHHHHhcCChHHHHHhhcCCCh-----hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHH
Q 009184          193 CRDLVLSQGGLVPLLAQLNGQPK-----LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACW  265 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~  265 (541)
                      +...++..+++..|++++.....     .++...++.++..|.++.-.........++..++......  |..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            34566788899999999965543     4778888999999988753333334456677777776643  6889999999


Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch
Q 009184          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (541)
Q Consensus       266 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  318 (541)
                      .|-++..+++...+.+.+.=-++.|+..|..++..++..|+..+..+....++
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999988887777676666789999999999999999999988888765553

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.46  E-value=0.24  Score=51.48  Aligned_cols=194  Identities=13%  Similarity=0.170  Sum_probs=136.1

Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh
Q 009184          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (541)
Q Consensus       240 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  319 (541)
                      +...++|.|++++...|..++...+.-+-.....   ..+..++..+++.+..-+.+.++.++...+.++..++..-...
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            5578999999999999999988766655544433   2234677789999999999999999999999999888643322


Q ss_pred             HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK  399 (541)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~  399 (541)
                         .++...+..+.++-.+. +..+|-...-+|+.++.......+              +.-......+.+.++-...|.
T Consensus       404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~R--------------~~vL~~aftralkdpf~paR~  465 (690)
T KOG1243|consen  404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASVR--------------KRVLASAFTRALKDPFVPARK  465 (690)
T ss_pred             ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhhh--------------ccccchhhhhhhcCCCCCchh
Confidence               34444555555555544 778888888888888764322111              112233455556667778888


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhh
Q 009184          400 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE  458 (541)
Q Consensus       400 ~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~  458 (541)
                      .+.+++......-....    +...+++.++.+.-+++..++..+..++...+...++.
T Consensus       466 a~v~~l~at~~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  466 AGVLALAATQEYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             hhhHHHhhcccccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            88888876654322221    45578889999988889889999988888887765554

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.45  E-value=0.016  Score=55.99  Aligned_cols=113  Identities=15%  Similarity=0.180  Sum_probs=84.9

Q ss_pred             CchHHHH-HhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHH
Q 009184          327 QALPCLL-NLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI  405 (541)
Q Consensus       327 ~~l~~L~-~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL  405 (541)
                      +++..|+ +.+++. ++.+|..|..+||-++--+.+...                ..++.+...+..++..++..|+.++
T Consensus        26 ~ll~~lI~P~v~~~-~~~vR~~al~cLGl~~Lld~~~a~----------------~~l~l~~~~~~~~~~~v~~~al~~l   88 (298)
T PF12719_consen   26 SLLDSLILPAVQSS-DPAVRELALKCLGLCCLLDKELAK----------------EHLPLFLQALQKDDEEVKITALKAL   88 (298)
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhChHHHH----------------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4454444 788888 899999999999999885554433                3466778888778999999999999


Q ss_pred             HHhccCCCHHHHHHHH-------HcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184          406 SNATSGGTHEQIKFLV-------IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       406 ~nl~~~~~~~~~~~l~-------~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~  456 (541)
                      ..+.............       ...+++.+...+.+.+++++..+.+++.+|+-.+.
T Consensus        89 ~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~  146 (298)
T PF12719_consen   89 FDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR  146 (298)
T ss_pred             HHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence            9987533222222211       24578888999999999999999999999986553

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.44  E-value=0.023  Score=61.78  Aligned_cols=143  Identities=14%  Similarity=0.189  Sum_probs=112.0

Q ss_pred             cHHHHHHhhCC----CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184          286 VFPRLAEFLMH----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (541)
Q Consensus       286 ~l~~L~~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (541)
                      +.|.++...+.    .+|.++..|.-+|+.++.-+.+..     ..-++.|+..|...+++.+|..+.-+++.++...+.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            34455555533    568899999999999987665544     345788999998655999999999999999987776


Q ss_pred             HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHH
Q 009184          362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV  441 (541)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  441 (541)
                      .++                -.-+.|.+.|.+.++.+|+.|.-.|.+|+..+      .+.-.|.+.....+|.++++.+.
T Consensus       995 lie----------------~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen  995 LIE----------------PWTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred             ccc----------------hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHH
Confidence            665                46678999999999999999999999998842      22347999999999999999988


Q ss_pred             HHHHHHHHHHHHhh
Q 009184          442 TVCLEGLENILKVG  455 (541)
Q Consensus       442 ~~~l~~L~~l~~~~  455 (541)
                      ..+=..+..|...+
T Consensus      1053 dlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1053 DLAKSFFKELSSKG 1066 (1251)
T ss_pred             HHHHHHHHHhhhcc
Confidence            77765555555444

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.44  E-value=0.23  Score=49.07  Aligned_cols=147  Identities=13%  Similarity=0.192  Sum_probs=101.9

Q ss_pred             ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHH-HHhccCChHHHHH
Q 009184          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQA  280 (541)
Q Consensus       202 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L-~~l~~~~~~~~~~  280 (541)
                      ++..++..|.++.+...+..|+.+|..+|+..+..-+....-.+..+++.-.+.++++...|..+. .-++...+..   
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~---  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ---  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence            355667777666889999999999999999987666655566666666666666666655554443 3344444422   


Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                           -+..+..++...+......++..+..++..-+...-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus       407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                 133444555556666777788888888865543322233357899999999998 89999999999998875

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.41  E-value=0.37  Score=51.95  Aligned_cols=198  Identities=15%  Similarity=0.210  Sum_probs=116.1

Q ss_pred             HHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCchhHHHHH-hcCchHHHHHhhcCCCchh
Q 009184          266 ALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLSGNYKKS  343 (541)
Q Consensus       266 ~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~  343 (541)
                      ++.+++...++....+++.|++..+...+.. .+..+...++..++|++........... +.--...+..++..-.+.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            6777788888888999999999999999964 5677899999999999975533221111 1101122333443331335


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc
Q 009184          344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  423 (541)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  423 (541)
                      .-..|+..|+.+...+++...           ..               ....+......++........    .. .-.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~-----------~~---------------~r~~~~~~l~e~i~~~~~~~~----~~-~~~  622 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTE-----------CV---------------FRNSVNELLVEAISRWLTSEI----RV-IND  622 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcc-----------cc---------------chHHHHHHHHHHhhccCccce----ee-hhh
Confidence            666677777777664333211           00               011222223333333322211    11 111


Q ss_pred             CChHH-HhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc-CCCHHHHHHHHHH
Q 009184          424 GCIKP-LCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT-HDNAEIYEKSVKL  500 (541)
Q Consensus       424 ~~i~~-L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~-~~~~~i~~~a~~i  500 (541)
                      ..+.+ +..++. +..+..+..+++++.+++...+.           |+..+.+.|++..++++.. +...++...+..+
T Consensus       623 ~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (699)
T KOG3665|consen  623 RSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE-----------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLV  691 (699)
T ss_pred             hhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh-----------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence            22222 444443 34556777888888888865433           6788888999999988842 2366777777777


Q ss_pred             HHHhC
Q 009184          501 LETYW  505 (541)
Q Consensus       501 l~~~~  505 (541)
                      ++...
T Consensus       692 i~~~~  696 (699)
T KOG3665|consen  692 IESCE  696 (699)
T ss_pred             hhccc
Confidence            76553

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.41  E-value=0.26  Score=47.59  Aligned_cols=192  Identities=19%  Similarity=0.208  Sum_probs=116.5

Q ss_pred             HHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh--hhhchHHHHHHhhccCChhHHHHHHHHHHHhccC--ChHHHH
Q 009184          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD--QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQ  279 (541)
Q Consensus       204 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~--~~~~~~  279 (541)
                      ...+..+ .......+..++..+..+........+.  ....+++.+.+.++.+..+-+.-|+.++.-++-.  ......
T Consensus        46 ~~~Id~l-~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   46 KEAIDLL-TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHH-HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            3344444 4455778888888888888765433322  2355778888888877766566666666665532  222233


Q ss_pred             HHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHhhcC---CchhHHHHHhcCchHH--HHHhhcCC---------Cchh
Q 009184          280 AVIEAGVFPRLAEFLMHPS--PSVLIPALRTVGNIVTG---DDMQTQCVIEYQALPC--LLNLLSGN---------YKKS  343 (541)
Q Consensus       280 ~~~~~g~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~---~~~~~~~~~~~~~l~~--L~~lL~~~---------~~~~  343 (541)
                      .+++ .+.+.|.+.+.+..  ..+|..++.+|+-++..   ........++  .+..  .....+..         .++.
T Consensus       125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~  201 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAA  201 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccH
Confidence            4444 57788888886654  45666777777766542   2222221111  2331  11222221         1356


Q ss_pred             HHHHHHHHHHHHhcCChH-HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184          344 IKKEACWTVSNITAGNRE-QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       344 v~~~a~~~L~nl~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  411 (541)
                      +...|+.+.+-+...-+. .+.           ..++ ..+|.|..+|.+.+.+||..|..+|.-+...
T Consensus       202 l~~aAL~aW~lLlt~~~~~~~~-----------~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  202 LVAAALSAWALLLTTLPDSKLE-----------DLLE-EALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHH-----------HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            888888777777763333 233           3332 4689999999999999999999999877553

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.27  Score=48.86  Aligned_cols=268  Identities=15%  Similarity=0.131  Sum_probs=144.3

Q ss_pred             CChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          159 GAVPIFVKLL----YSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       159 g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      |.+..++..+    .+++..++..|+.+|+|.+...| +++...  .-.+..++..|.+..+.+|+..++.+|..+....
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            4554444443    34778999999999999998744 333332  2256777777767778889888888888776654


Q ss_pred             CCCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH-HHH--hCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184          234 PQPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA-VIE--AGVFPRLAEFLMHPSPSVLIPALRTV  309 (541)
Q Consensus       234 ~~~~~~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~-~~~--~g~l~~L~~lL~~~~~~v~~~al~~L  309 (541)
                      ...... ...++.-.+..+..+.+++++..+...++.|+.......+. +.+  .+-...++-.++++++.+ ..||+..
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~  410 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSE  410 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHH
Confidence            332221 22344445777788899999999998888876432221111 121  122233444456666543 4556665


Q ss_pred             hHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHH-HHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK-EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA  388 (541)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~  388 (541)
                      ...+.-+- ..+.+  .+.++.   .++.. -+..+. ..-| ...+....++...           .+.     .....
T Consensus       411 ~~~c~p~l-~rke~--~~~~q~---~ld~~-~~~~q~Fyn~~-c~~L~~i~~d~l~-----------~~~-----t~~~~  466 (533)
T KOG2032|consen  411 LRTCYPNL-VRKEL--YHLFQE---SLDTD-MARFQAFYNQW-CIQLNHIHPDILM-----------LLL-----TEDQH  466 (533)
T ss_pred             HHhcCchh-HHHHH--HHHHhh---hhHHh-HHHHHHHHHHH-HHHHhhhCHHHHH-----------HHH-----Hhchh
Confidence            55543221 11111  112221   11111 111111 1111 1112222233222           111     12222


Q ss_pred             HhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184          389 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       389 ~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      ++++.-+.++..+...-.++...-.+..+.+.--.-+...+..+...+-+++...+.+++..++.
T Consensus       467 ~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  467 IFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             heecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            33444445566555555565554444444443334456677778888889999999998887764

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.19  Score=53.16  Aligned_cols=218  Identities=10%  Similarity=0.109  Sum_probs=134.1

Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHH
Q 009184          212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLA  291 (541)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~  291 (541)
                      .++.+.++..++..+..+.+...........+++......+.+.|+-|--+|+..+..||+..++        .+++.+.
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~  808 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLS  808 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHH
Confidence            44556788899999999998765555566688999999999999999989999988888765443        4566666


Q ss_pred             H-hhCCC---ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH
Q 009184          292 E-FLMHP---SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM  367 (541)
Q Consensus       292 ~-lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  367 (541)
                      . .....   .++.+...-.++++++..-.+......+ -++...++.+..+ +...|..++..++++|.-..-...   
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~vs---  883 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQVS---  883 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhhhh---
Confidence            5 33221   1233444445555555433322222222 4566677777776 788899999999999873332222   


Q ss_pred             hhchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHHH--HHcCChHHHhhhcCCCChH-HHHH
Q 009184          368 HVHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFL--VIQGCIKPLCDLLVCPDPR-IVTV  443 (541)
Q Consensus       368 ~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l--~~~~~i~~L~~lL~~~~~~-~~~~  443 (541)
                              ..+ ..++..++.+... +.+-+|+.|+..+..+..+...+....+  .-.+....+..+....+.+ +...
T Consensus       884 --------d~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klh  954 (982)
T KOG4653|consen  884 --------DFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLH  954 (982)
T ss_pred             --------HHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence                    111 1244445555443 5689999999999999886544333322  1223444445554443332 3334


Q ss_pred             HHHHHHHH
Q 009184          444 CLEGLENI  451 (541)
Q Consensus       444 ~l~~L~~l  451 (541)
                      +..++..+
T Consensus       955 aql~leei  962 (982)
T KOG4653|consen  955 AQLCLEEI  962 (982)
T ss_pred             HHHHHHHH
Confidence            44444443

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.31  E-value=0.0086  Score=47.85  Aligned_cols=71  Identities=15%  Similarity=0.260  Sum_probs=60.7

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  187 (541)
                      ++..|+++|..++++....-|+.-|+.++...|..+..+-+.|+=..++.++.+++++|+..|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            58889999966555888889999999999988999998888899999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.31  E-value=0.52  Score=45.46  Aligned_cols=172  Identities=16%  Similarity=0.118  Sum_probs=114.2

Q ss_pred             hchHHHHH-HhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hh
Q 009184          242 SPALPALA-HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQ  319 (541)
Q Consensus       242 ~~~l~~L~-~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~  319 (541)
                      .+++..++ +.+++.+..++..++.+|+-.+--+.+...     ..++.+...+..++..++..|++++..+..... ..
T Consensus        25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            36665544 778899999999999999988855543222     346677777777788999999999998875322 11


Q ss_pred             HHH-------HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          320 TQC-------VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       320 ~~~-------~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      ...       .-...+++.+.+.+.+. +++++..|+..++.+...+.-.-               ...++..|+-...+
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---------------~~~vL~~Lll~yF~  163 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---------------PPKVLSRLLLLYFN  163 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---------------HHHHHHHHHHHHcC
Confidence            111       11245788889999998 89999999999999876321111               01244445444433


Q ss_pred             ----CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC
Q 009184          393 ----AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP  436 (541)
Q Consensus       393 ----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~  436 (541)
                          ++.++|+.-...+-.++.. .+.+. ..+....++.+..+.+..
T Consensus       164 p~t~~~~~LrQ~L~~Ffp~y~~s-~~~~Q-~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  164 PSTEDNQRLRQCLSVFFPVYASS-SPENQ-ERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             cccCCcHHHHHHHHHHHHHHHcC-CHHHH-HHHHHHHHHHHHHHHhCc
Confidence                2467888777777777775 44443 445556666666666553

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.49  Score=49.92  Aligned_cols=198  Identities=17%  Similarity=0.094  Sum_probs=130.4

Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-hhhHHHHHHHHhHhhcCCch
Q 009184          240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDM  318 (541)
Q Consensus       240 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~v~~~al~~L~nl~~~~~~  318 (541)
                      .-.++...|+.+.....+........+|..-...+....     ..+++.+.+.+.... ..-...++.++.|+++.++.
T Consensus       501 Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-----~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s  575 (748)
T KOG4151|consen  501 IKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-----YEVVKPLDSALHNDEKGLENFEALEALTNLASISES  575 (748)
T ss_pred             ccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-----hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchh
Confidence            446788888888877766666666666652111111111     134455555554333 22345689999999998888


Q ss_pred             hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHh-cCcHHHHHHHhhcCchhH
Q 009184          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIE-ANIIGPLVALLENAEFDI  397 (541)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v  397 (541)
                      ..+.+.....++.+-.++... ++..+..++..+.|+.-+..-...           .+.+ ..-++.....+...+...
T Consensus       576 ~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~-----------si~e~~~~l~~w~~~~e~~~E~~  643 (748)
T KOG4151|consen  576 DRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYER-----------SIVEYKDRLKLWNLNLEVADEKF  643 (748)
T ss_pred             hHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHH-----------HhhccccCchHHHHHHHhhhhHH
Confidence            777888888888888888877 899999999999999986443333           4444 345555555566666677


Q ss_pred             HHHHHHHHHHhccCCCHHHHH-HHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184          398 KKEAAWAISNATSGGTHEQIK-FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~~~~~~~-~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~  455 (541)
                      ..+++.++.-++.. ...++. .+--......+..++.++++.+....+..+.++...+
T Consensus       644 ~lA~a~a~a~I~sv-~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~  701 (748)
T KOG4151|consen  644 ELAGAGALAAITSV-VENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL  701 (748)
T ss_pred             hhhccccccchhhc-chhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence            77777776655543 334444 2233566788888999999988887777776655443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.27  E-value=1  Score=49.01  Aligned_cols=241  Identities=17%  Similarity=0.193  Sum_probs=142.3

Q ss_pred             hchHHHHHHhhcc-----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh----CCCC----hhhHHHHHHH
Q 009184          242 SPALPALAHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL----MHPS----PSVLIPALRT  308 (541)
Q Consensus       242 ~~~l~~L~~lL~~-----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL----~~~~----~~v~~~al~~  308 (541)
                      .+++..++.++.+     .+.+....++..|.+++.- ..+.+.+++.|+++.|+..+    ..+.    ..+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            4566666666653     2345666667777776655 44567788899999998877    3333    5677777777


Q ss_pred             HhHhhcCCchhHHHH----H--------hcCchHHHHHhhcCCC---chhHHHHHHHHHHHHhcCChHHHHHHHhhchhh
Q 009184          309 VGNIVTGDDMQTQCV----I--------EYQALPCLLNLLSGNY---KKSIKKEACWTVSNITAGNREQIQVIMHVHAFS  373 (541)
Q Consensus       309 L~nl~~~~~~~~~~~----~--------~~~~l~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~  373 (541)
                      +..+...........    .        +...+..+++.+.+..   ++.+....+.+|.+++.++.+.++         
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~---------  265 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD---------  265 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH---------
Confidence            776665332111000    0        1123666777666542   578889999999999999999888         


Q ss_pred             HHHHHhcCcHHHHHHHh--hcCchhHHHHHHHHHHHhccCC-----CHHHHHHHHHcCChHHHhhhcCCCCh--------
Q 009184          374 IIAVIEANIIGPLVALL--ENAEFDIKKEAAWAISNATSGG-----THEQIKFLVIQGCIKPLCDLLVCPDP--------  438 (541)
Q Consensus       374 ~~~l~~~~~l~~L~~~l--~~~~~~v~~~a~~aL~nl~~~~-----~~~~~~~l~~~~~i~~L~~lL~~~~~--------  438 (541)
                        .+++  .+.+.+++=  ...+..--...+.+++.++.+-     .......+++.|++...+++|...-|        
T Consensus       266 --~Lv~--~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~  341 (802)
T PF13764_consen  266 --ALVE--HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSP  341 (802)
T ss_pred             --HHHH--HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCH
Confidence              5554  122222211  1111111122355555555422     13455667788998888887743211        


Q ss_pred             H--------HHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH-hcCCCHHHHHHHHHHHHHhCCCC
Q 009184          439 R--------IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL-QTHDNAEIYEKSVKLLETYWLDD  508 (541)
Q Consensus       439 ~--------~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L-~~~~~~~i~~~a~~il~~~~~~~  508 (541)
                      +        -...+|..|.-+......            .+.+...+++..+..| +.+....|-..|.++|+.+-+.+
T Consensus       342 eWk~~l~~psLp~iL~lL~GLa~gh~~------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  342 EWKEFLSRPSLPYILRLLRGLARGHEP------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHhcCHH------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence            1        233455555555544332            2222346677777777 44557888889989888776533

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.14  Score=54.19  Aligned_cols=228  Identities=13%  Similarity=0.113  Sum_probs=143.9

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        71 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      +.+.+...+..+..+.+.++-.|+..+++++..  ......+...+++...++.|++.+ +-+-..|+..+..+|.-.+ 
T Consensus       725 ~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~--r~~~~~~~~ekvl~i~ld~Lkded-syvyLnaI~gv~~Lcevy~-  800 (982)
T KOG4653|consen  725 DIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK--RKKATLIQGEKVLAIALDTLKDED-SYVYLNAIRGVVSLCEVYP-  800 (982)
T ss_pred             cHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHHhcccC-ceeeHHHHHHHHHHHHhcc-
Confidence            445567777788888888999999999999864  244445557889999999999998 8888889988888876433 


Q ss_pred             HHHHHHhCCChHHHHHhh-CC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHH
Q 009184          151 HTKVVIDHGAVPIFVKLL-YS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL-~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L  226 (541)
                             ..++|.|...- +.   ..++.+-.+-.++.+++....+....-.. -.+..+++.+ ++++...+..++..+
T Consensus       801 -------e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gv-repd~~~RaSS~a~l  871 (982)
T KOG4653|consen  801 -------EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGV-REPDHEFRASSLANL  871 (982)
T ss_pred             -------hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhc-CCchHHHHHhHHHHH
Confidence                   34678787743 32   21344444556777776332221111111 2456677777 567888899999999


Q ss_pred             HhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhC-CCChhh
Q 009184          227 SNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLM-HPSPSV  301 (541)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~-~~~~~v  301 (541)
                      .++|+-....-......++..++.+...+ ..-++..|.-.+..+..+.....-.+...   +....+.+... +++..+
T Consensus       872 g~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~  951 (982)
T KOG4653|consen  872 GQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGL  951 (982)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence            99997653333334556666677776654 45678888888887775544222222211   23333444443 344455


Q ss_pred             HHHHHHHHhH
Q 009184          302 LIPALRTVGN  311 (541)
Q Consensus       302 ~~~al~~L~n  311 (541)
                      +..|+.++-.
T Consensus       952 klhaql~lee  961 (982)
T KOG4653|consen  952 KLHAQLCLEE  961 (982)
T ss_pred             HHHHHHHHHH
Confidence            5566555543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.25  E-value=0.6  Score=50.69  Aligned_cols=210  Identities=15%  Similarity=0.176  Sum_probs=128.2

Q ss_pred             hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---CCCh----hhHHHHHHH
Q 009184          157 DHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPK----LSMLRNATW  224 (541)
Q Consensus       157 ~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~~~~----~~~~~~a~~  224 (541)
                      +.|++..++.++.+     ....+....+..|..+|. -+.+|..+++.|+++.|+..+.   ....    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            46889989888866     234555556666655554 4668999999999999998884   2222    566666666


Q ss_pred             HHHhhhcCCCCCChh-------------hhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcH
Q 009184          225 TLSNFCRGKPQPPFD-------------QVSPALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF  287 (541)
Q Consensus       225 ~L~~l~~~~~~~~~~-------------~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l  287 (541)
                      ++-.+..........             ....-+..++..+.+    .++.+....++.|-+|+.+..+..+.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            665554432111110             123345666666654    368899999999999999998887776652  2


Q ss_pred             HHHHHhh--CCCChhhHHHHHHHHhHhhcCC------chhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC
Q 009184          288 PRLAEFL--MHPSPSVLIPALRTVGNIVTGD------DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN  359 (541)
Q Consensus       288 ~~L~~lL--~~~~~~v~~~al~~L~nl~~~~------~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  359 (541)
                      ...+++=  +.....--...+.+++.++.+-      ....+.+++.|++...+..|... -|..           ....
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~~  339 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNTD  339 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccCC
Confidence            2222221  1111111123356666666543      24567788999999888888766 4433           1112


Q ss_pred             hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      ++...           .++....+|.++.+|..
T Consensus       340 s~eWk-----------~~l~~psLp~iL~lL~G  361 (802)
T PF13764_consen  340 SPEWK-----------EFLSRPSLPYILRLLRG  361 (802)
T ss_pred             CHHHH-----------HHhcCCcHHHHHHHHHH
Confidence            33334           56667778887777753

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.24  E-value=0.21  Score=45.90  Aligned_cols=187  Identities=14%  Similarity=0.141  Sum_probs=121.6

Q ss_pred             CHHHHHHHHHHHHHHHccCCCCcHHHHH--hcCCHHHHHHhh-------cCCC-c---HHHHHHHHHHHHHHhcCChhHH
Q 009184           86 DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFL-------LRED-Y---PQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        86 ~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL-------~~~~-~---~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +++.+..|+..|.+--..  .+....++  .-|.+..|++=+       +.+. +   ..-...|+..|..+++ .|+.+
T Consensus         8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred             CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence            578899999999876432  34444333  467777776533       2221 1   1333455666667777 69999


Q ss_pred             HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHH
Q 009184          153 KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L  226 (541)
                      ..++++.+.-.|..+|..     +.+.+|-.++..+|.+.. ++++.-..+++.+++|..++.+ ..+++-.+..|+.++
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m-e~GselSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM-EFGSELSKTVATFIL  163 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH-HHS-HHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH-HhccHHHHHHHHHHH
Confidence            999999877777777754     237788899999999984 5667778888999999999999 555666677778777


Q ss_pred             HhhhcCCCC--------CChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhccCChH
Q 009184          227 SNFCRGKPQ--------PPFDQVSPALPALAH-LIHSNDDEVLTDACWALSYLSDGTND  276 (541)
Q Consensus       227 ~~l~~~~~~--------~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~~~~~  276 (541)
                      ..+..++..        ..+..+..++..++. +...+++.+...+++|...|++++..
T Consensus       164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra  222 (262)
T PF04078_consen  164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA  222 (262)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred             HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence            776655311        112223333443333 34567888999999999999987654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=2  Score=45.18  Aligned_cols=300  Identities=15%  Similarity=0.091  Sum_probs=168.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CChhhHHHHHhcCChHH
Q 009184          136 EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--------PSDDVREQAVWALGNIAG--DSPRCRDLVLSQGGLVP  205 (541)
Q Consensus       136 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~nl~~--~~~~~r~~i~~~g~i~~  205 (541)
                      .|+.++..+.+..++.+  +  .|+++.+...|..        +++.-.+.|++.++++..  ..+....-+++.-+++.
T Consensus       389 aal~fl~~~~sKrke~T--f--qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         389 AALFFLIISKSKRKEET--F--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHHhcccchhh--h--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            45555555555333332  1  3788988888832        345556778888888764  22222222334334555


Q ss_pred             HHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (541)
Q Consensus       206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  285 (541)
                      ++..+ ++..--++..+|..++.+..+  -++......+.+...+++.+++-.|+..|+-|+..+..+..  ......+.
T Consensus       465 v~P~f-~s~ygfL~Srace~is~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sah  539 (970)
T COG5656         465 VIPAF-RSNYGFLKSRACEFISTIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAH  539 (970)
T ss_pred             hhHhh-cCcccchHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhh
Confidence            55555 667778899999999999544  33334456677777888888888899999989887765442  33344444


Q ss_pred             cHHHHHHhh---CCCChhhHHHHHHHH-hHhhcCCchhHHHHH---hcCchHHHHHhhcCCC-----chhHHHHHHHHHH
Q 009184          286 VFPRLAEFL---MHPSPSVLIPALRTV-GNIVTGDDMQTQCVI---EYQALPCLLNLLSGNY-----KKSIKKEACWTVS  353 (541)
Q Consensus       286 ~l~~L~~lL---~~~~~~v~~~al~~L-~nl~~~~~~~~~~~~---~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~  353 (541)
                      +.+.+-++|   +.-+.++...++..+ +..+..-......+.   -..++.....++.+++     ..+-+..|...|.
T Consensus       540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~  619 (970)
T COG5656         540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR  619 (970)
T ss_pred             hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence            444444444   333333333333322 222211111111111   1123333444444331     1133445555555


Q ss_pred             HHhc------CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 009184          354 NITA------GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK  427 (541)
Q Consensus       354 nl~~------~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~  427 (541)
                      .+.+      ..+...+            -+.....|.+--+++..-.++-.+|+..+-+.+...  ..+. =+.=|+.+
T Consensus       620 T~~smiLSlen~p~vLk------------~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s--keI~-pimwgi~E  684 (970)
T COG5656         620 TIESMILSLENRPLVLK------------YLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS--KEIE-PIMWGIFE  684 (970)
T ss_pred             HHHHHHHhcccchHHHH------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH--HHhh-hhhhHHHH
Confidence            5543      2333332            233355666666677777788888888887765421  1111 12236677


Q ss_pred             HHhhhcCCCCh-HHHHHHHHHHHHHHHhhHhhh
Q 009184          428 PLCDLLVCPDP-RIVTVCLEGLENILKVGEAEK  459 (541)
Q Consensus       428 ~L~~lL~~~~~-~~~~~~l~~L~~l~~~~~~~~  459 (541)
                      .+.+++..+++ ...+.+..++.+++.+|....
T Consensus       685 ll~~~l~~~~t~~y~ee~~~al~nfityG~~ef  717 (970)
T COG5656         685 LLLNLLIDEITAVYSEEVADALDNFITYGKTEF  717 (970)
T ss_pred             HHHhcccccchhhhHHHHHHHHHHHHHhCcccc
Confidence            77777777764 667777889999999886543

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.20  E-value=1.9  Score=44.56  Aligned_cols=287  Identities=13%  Similarity=0.096  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH
Q 009184           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK  166 (541)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~  166 (541)
                      -..+..|+..++..+...+-.++..     +...--+++....+++.|..+...|..++...........     ..+.+
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence            3467778888887776543333332     2444445666665578899999999888875433111111     11222


Q ss_pred             hhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC--------------------------CChhhHH
Q 009184          167 LLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------------------QPKLSML  219 (541)
Q Consensus       167 lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~--------------------------~~~~~~~  219 (541)
                      .+. ...++-...-+.+|..|+.++.....  .+.+..+.+...+..                          +.+....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            222 23333344556666667666554411  355566666655511                          0123344


Q ss_pred             HHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhh
Q 009184          220 RNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFL  294 (541)
Q Consensus       220 ~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL  294 (541)
                      ...+..+.++.+.. .......+.+++..+..+.. +.++.....++..+-.+...   +.+...     .++..|....
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~  226 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV  226 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence            45555666666555 33444555666666666543 33344444444444333321   222211     2333444443


Q ss_pred             CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-----CchhHHHHHHHHHHHHhcCChHH-HHHHHh
Q 009184          295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-----YKKSIKKEACWTVSNITAGNREQ-IQVIMH  368 (541)
Q Consensus       295 ~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~  368 (541)
                      ...  +....+-+++.||+...-.+       ..+..|..+|..+     .+..+.+-|+..+..+..+..+. +.    
T Consensus       227 ~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~----  293 (464)
T PF11864_consen  227 NSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYP----  293 (464)
T ss_pred             ccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcc----
Confidence            222  67778888888888643322       2345677777322     14456677888888877754222 21    


Q ss_pred             hchhhHHHHHhc--CcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          369 VHAFSIIAVIEA--NIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       369 ~~~~~~~~l~~~--~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                             .+--.  -+++.+...++..+..+-.+++..+.++..
T Consensus       294 -------~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  294 -------SLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             -------eecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence                   22122  378888889988888888888888888874

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.07  E-value=0.5  Score=42.66  Aligned_cols=145  Identities=14%  Similarity=0.155  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC----CcHHHHHHHHHHHHHHhcCC-hhHHHHHHhCCCh
Q 009184           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----DYPQLQFEAAWALTNIASGT-SEHTKVVIDHGAV  161 (541)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~----~~~~i~~~a~~~L~~l~~~~-~~~~~~i~~~g~i  161 (541)
                      +.-...|+..+.-++|.  .+....+.++.+=-.|-.+|...    ..+.+|..++.+++.+...+ .+....+...+++
T Consensus        93 snRVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIV  170 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIV  170 (293)
T ss_pred             cchHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhH
Confidence            34456777777777765  56666777776544555555432    23779999999999998844 4555666788999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc-------CChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-------GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-------g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      |..++.+...++.-+..|..++..|..++....-.....       -.+..++..+.+.++..+..+++.+..+|+.+.
T Consensus       171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999999987775432221111       123444444446778888889999988888763

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.03  E-value=0.45  Score=47.05  Aligned_cols=174  Identities=11%  Similarity=0.108  Sum_probs=106.4

Q ss_pred             hhhHHHHHHH-HHHhhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009184          215 KLSMLRNATW-TLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (541)
Q Consensus       215 ~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~  292 (541)
                      ..+-+..|+. ...-+|.+.-.........++..++..|.. .+..++.-|++.|..++...+....--.+ -.+..++.
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence            3344455555 333444443333344456777788888876 67778999999999999776643221111 23444444


Q ss_pred             hhCCCChhhHHHHHHH-HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhc
Q 009184          293 FLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVH  370 (541)
Q Consensus       293 lL~~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~  370 (541)
                      .-.+....+...|... +.-+++..+...        +..+..++.+. +...-..++..+..++.. +.+...      
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~------  443 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELL------  443 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHH------
Confidence            4455555555555444 334444444332        33345555555 555555666677777763 333332      


Q ss_pred             hhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       371 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                           .++ ..+.|.+++...+.+..||+.|+++|..+..
T Consensus       444 -----~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  444 -----NLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             -----Hhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence                 333 3799999999999999999999999998864

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.84  E-value=0.68  Score=42.87  Aligned_cols=103  Identities=15%  Similarity=0.081  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~  209 (541)
                      ......|+.+|.-++--.|..+..+.....+..|+.+|.. ..+.++..++.+|..+..+++.....+-+.+++..+..+
T Consensus       105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            3455668889999888889999999999999999999954 678999999999999999999888888899999999999


Q ss_pred             hcC-CChhhHHHHHHHHHHhhhcCC
Q 009184          210 LNG-QPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       210 l~~-~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      ++. +.+.+++-.++..|.-+....
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHccc
Confidence            953 456778778887777666544

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.75  E-value=0.084  Score=38.32  Aligned_cols=66  Identities=26%  Similarity=0.379  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHHHHHc
Q 009184          345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKFLVIQ  423 (541)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~  423 (541)
                      .+.|.|+++++++ ++..+.           .+.+.++++.++++... +...+|-.|.++|+-++.  +.+..+.|-+.
T Consensus         4 lKaaLWaighIgs-s~~G~~-----------lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQ-----------LLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHH-----------HHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHc
Confidence            5789999999988 456666           66678999999999875 568999999999999887  56666666555


Q ss_pred             C
Q 009184          424 G  424 (541)
Q Consensus       424 ~  424 (541)
                      |
T Consensus        70 g   70 (73)
T PF14668_consen   70 G   70 (73)
T ss_pred             C
Confidence            4

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.75  E-value=0.52  Score=46.74  Aligned_cols=275  Identities=17%  Similarity=0.139  Sum_probs=141.1

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHH-HHHhhhcCCCCCCh
Q 009184          161 VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPF  238 (541)
Q Consensus       161 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~-~L~~l~~~~~~~~~  238 (541)
                      +.+++.-+.+ ....+|..++.-|+.-+.+.. +|..+...|....+++.+...++..+...++. ++.-++++.+....
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~-Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQ-FRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHH-HHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            4555555553 556788888888888887554 89999999999999999955554434444444 44445555454444


Q ss_pred             hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh---------CCCChhhHHHHHHH
Q 009184          239 DQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL---------MHPSPSVLIPALRT  308 (541)
Q Consensus       239 ~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL---------~~~~~~v~~~al~~  308 (541)
                      ......+..+..++... ...+......       ..........+ +.+..+...+         .+...+-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~-------~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSDS-------SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchhh-------hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            34455666667777611 0000000000       00000011111 1222222222         11233445566666


Q ss_pred             HhHhhc--------------CCchhHHHHHhcCchHHHHHhhcC----CC-----------chhHHHHHHHHHHHHhcCC
Q 009184          309 VGNIVT--------------GDDMQTQCVIEYQALPCLLNLLSG----NY-----------KKSIKKEACWTVSNITAGN  359 (541)
Q Consensus       309 L~nl~~--------------~~~~~~~~~~~~~~l~~L~~lL~~----~~-----------~~~v~~~a~~~L~nl~~~~  359 (541)
                      +-.++.              ..+...+.+...|+++.++..+..    ..           +...-..++.+|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            666631              111223455667889999888852    10           1122344566677776654


Q ss_pred             hHHHHHHHhhchhhHHHHH--hcCcHHHHHHH----hhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH----
Q 009184          360 REQIQVIMHVHAFSIIAVI--EANIIGPLVAL----LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL----  429 (541)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~--~~~~l~~L~~~----l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L----  429 (541)
                      .+...           +++  ..+.++.+...    .......+...++..+.|++.. ++..+..+...++...+    
T Consensus       254 ~~nq~-----------~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s~~l~~~~~~i~  321 (361)
T PF07814_consen  254 EENQS-----------YLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFASPKLGQQLGLIV  321 (361)
T ss_pred             ccchH-----------HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhhhHhccchHHHH
Confidence            54444           333  22333333332    2223355567889999999875 44444444433222211    


Q ss_pred             ---hhhcCC-------CChHHHHHHHHHHHHHHHhhH
Q 009184          430 ---CDLLVC-------PDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       430 ---~~lL~~-------~~~~~~~~~l~~L~~l~~~~~  456 (541)
                         ..++..       ..-+++..+++++.|+....+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  322 TSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             HhhcccccccccccccccchHHHHHHHhHHHheeeCc
Confidence               111111       112566677777777776543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.70  E-value=2  Score=42.02  Aligned_cols=167  Identities=17%  Similarity=0.159  Sum_probs=115.6

Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--Cc--------hhH
Q 009184          329 LPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AE--------FDI  397 (541)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~--------~~v  397 (541)
                      ++.+.+.|... +..+...+...|..++. .+......++...+|..      ..++.+...=..  .+        +.+
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~------~~l~kll~~~~~~~~~~~~~~~~~~si  130 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSL------KSLPKLLTPRKKEKEKDSESSKSKPSI  130 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCch------hhHHHHhccccccccccccccccCcCH
Confidence            77888899888 77788899999999998 66565552222222221      233334322111  11        289


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHH-cCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhc
Q 009184          398 KKEAAWAISNATSGGTHEQIKFLVI-QGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA  476 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~  476 (541)
                      |...+..+..+...+++.....+.+ .+.+..+..-+..++++++..+|.+|..=+-..+..+..       ....+-..
T Consensus       131 R~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~-------~K~~~fn~  203 (330)
T PF11707_consen  131 RTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS-------TKCKLFNE  203 (330)
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh-------hhhhhcCH
Confidence            9999999999988888887777775 577999999999888899999999888533333222211       12233335


Q ss_pred             chHHHHHHHhcCCCH----HHHHHHHHHHHHhCCCCC
Q 009184          477 EGLEKIESLQTHDNA----EIYEKSVKLLETYWLDDE  509 (541)
Q Consensus       477 ~~~~~l~~L~~~~~~----~i~~~a~~il~~~~~~~~  509 (541)
                      ..+.+|..|....++    .+.+.+...+..++..-.
T Consensus       204 ~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  204 WTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             HHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence            578888889888888    999999999998876433

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.69  E-value=0.84  Score=46.50  Aligned_cols=108  Identities=18%  Similarity=0.202  Sum_probs=79.6

Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  317 (541)
                      ...+.+.+-.++..+.+.|..|+..+|..|..+.+.-.+ +...+-.|++..|.+-+-+..+.+|..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            445677777888888899999999999999988865332 3445556888889888888999999999999998864322


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (541)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (541)
                      ..-     ..+...|..+++++++.+||..|..-
T Consensus       165 nee-----n~~~n~l~~~vqnDPS~EVRr~alln  193 (885)
T COG5218         165 NEE-----NRIVNLLKDIVQNDPSDEVRRLALLN  193 (885)
T ss_pred             ChH-----HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            111     12344677788877688899876543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.64  E-value=0.14  Score=43.94  Aligned_cols=144  Identities=15%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             HHHHHhhC--CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHH
Q 009184          288 PRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV  365 (541)
Q Consensus       288 ~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (541)
                      +.++..|.  ...++++..++-++..+.   +... .-....+-+.+-.++... +.+-...++.+++.+.-+.++... 
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~-~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~-   79 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAAR-EEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS-   79 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH-
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhH-HHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH-
Confidence            44444443  356678999988888884   2111 222233445566666665 666778899999999888888877 


Q ss_pred             HHhhchhhHHHHH-hcCcHHHHHHHhh--cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChH-H
Q 009184          366 IMHVHAFSIIAVI-EANIIGPLVALLE--NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPR-I  440 (541)
Q Consensus       366 ~~~~~~~~~~~l~-~~~~l~~L~~~l~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~-~  440 (541)
                                .++ ..|+++.++.++.  +.+..++..++.+|..-+.  +...+. .+...+++.|.++++. ++.. +
T Consensus        80 ----------~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~-~I~~~~~~~L~~~~~~~~~~~~i  146 (157)
T PF11701_consen   80 ----------ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRT-FISKNYVSWLKELYKNSKDDSEI  146 (157)
T ss_dssp             ----------HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHH-CCHHHCHHHHHHHTTTCC-HH-C
T ss_pred             ----------HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHH-HHHHHHHHHHHHHHccccchHHH
Confidence                      666 7799999999998  7788999999999988776  334444 4555678899999854 4444 5


Q ss_pred             HHHHHHHHHH
Q 009184          441 VTVCLEGLEN  450 (541)
Q Consensus       441 ~~~~l~~L~~  450 (541)
                      +..++-+|.+
T Consensus       147 r~~A~v~L~K  156 (157)
T PF11701_consen  147 RVLAAVGLCK  156 (157)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            5555555543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.1  Score=52.49  Aligned_cols=151  Identities=22%  Similarity=0.304  Sum_probs=103.7

Q ss_pred             HhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 009184          123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL-LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQG  201 (541)
Q Consensus       123 ~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g  201 (541)
                      +++.+.+ +-++...+..++.--.++.       +.|++..|+.. .+..+.++++.|..+|+-+|.+++.         
T Consensus       523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------  585 (926)
T COG5116         523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------  585 (926)
T ss_pred             HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence            3444444 6777776666655444322       23667778777 6678899999999999999977653         


Q ss_pred             ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHH
Q 009184          202 GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  281 (541)
Q Consensus       202 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~  281 (541)
                      .+...+.+|..+.+..++...+.+|...|.+..      ...++..|-.++.....-|+..|+.+++.+..........-
T Consensus       586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G------~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~  659 (926)
T COG5116         586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTG------DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN  659 (926)
T ss_pred             hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc------cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence            456667777678889999999999998888742      23456667777777888899999999988764333221111


Q ss_pred             HHhCcHHHHHHhhCCC
Q 009184          282 IEAGVFPRLAEFLMHP  297 (541)
Q Consensus       282 ~~~g~l~~L~~lL~~~  297 (541)
                      + .++...+.+.+.+.
T Consensus       660 v-~~I~k~f~~vI~~K  674 (926)
T COG5116         660 V-KRIIKKFNRVIVDK  674 (926)
T ss_pred             H-HHHHHHHHHHHhhh
Confidence            1 15666677776543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.59  E-value=1  Score=45.54  Aligned_cols=259  Identities=14%  Similarity=0.138  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-
Q 009184           92 ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-  170 (541)
Q Consensus        92 ~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-  170 (541)
                      .+...|.+++......+....++...+..|+.++.++| +.-|...-.+|.++-......+..+.. .+...|.+++.. 
T Consensus       109 ~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~  186 (409)
T PF01603_consen  109 LVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYET  186 (409)
T ss_dssp             HHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCc
Confidence            34455555554322222333556667899999999999 999999999999988766667766654 345666677654 


Q ss_pred             CCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHH
Q 009184          171 PSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALA  249 (541)
Q Consensus       171 ~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~  249 (541)
                      ....-...++..++.+..+-. +.++..... ....++.+.....-.........++..++..+|.    ....++..++
T Consensus       187 ~~~~gI~elLeil~sii~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~ll  261 (409)
T PF01603_consen  187 ERHNGIAELLEILGSIINGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLL  261 (409)
T ss_dssp             S--STHHHHHHHHHHHHTT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHhccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHH
Confidence            445555668888888875422 232221111 1233344443333444566777777777765432    2233334444


Q ss_pred             HhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh---
Q 009184          250 HLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE---  325 (541)
Q Consensus       250 ~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~---  325 (541)
                      +.--..+..-..--+.-+..+... ++.....+ ...++..+...+.+++..|.+.|+..+.|     +... .++.   
T Consensus       262 k~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~-~li~~~~  334 (409)
T PF01603_consen  262 KHWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFL-SLISQNS  334 (409)
T ss_dssp             HHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHH-HHHHCTH
T ss_pred             HhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHH-HHHHhCh
Confidence            333234444333344444454443 23333322 23577888888999999999999877643     2222 2222   


Q ss_pred             cCchHHHHHhhcCCC----chhHHHHHHHHHHHHhcCChHHHH
Q 009184          326 YQALPCLLNLLSGNY----KKSIKKEACWTVSNITAGNREQIQ  364 (541)
Q Consensus       326 ~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~~~~~~~~  364 (541)
                      ..++|.+...|....    +..++..|..++.-+..-+++..+
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHH
Confidence            236777777765421    568999999998888877676554

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.53  E-value=0.019  Score=33.96  Aligned_cols=29  Identities=45%  Similarity=0.697  Sum_probs=25.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 009184          160 AVPIFVKLLYSPSDDVREQAVWALGNIAG  188 (541)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  188 (541)
                      ++|.++++++++++++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.40  E-value=0.026  Score=33.40  Aligned_cols=29  Identities=28%  Similarity=0.429  Sum_probs=25.7

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~  146 (541)
                      ++|.+++++++++ +++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            4789999999998 9999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.37  E-value=0.49  Score=47.03  Aligned_cols=144  Identities=15%  Similarity=0.191  Sum_probs=104.8

Q ss_pred             CcHHHHHh-cCCHHHHHHhhcCCC--cHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC-C---CCHHHHHHH
Q 009184          107 PPIEEVIR-SGVVPRFVEFLLRED--YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-S---PSDDVREQA  179 (541)
Q Consensus       107 ~~~~~~i~-~g~i~~Lv~lL~~~~--~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~v~~~a  179 (541)
                      ...+.+++ ..+...|...+++..  -+.+-..|+.+++.+....|.....+.+.|+++.++..+. .   ++.++....
T Consensus        96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l  175 (379)
T PF06025_consen   96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL  175 (379)
T ss_pred             cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence            34556666 666777777787654  2688899999999999988999999999999999999887 3   677888888


Q ss_pred             HHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChh------hHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHh
Q 009184          180 VWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL------SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHL  251 (541)
Q Consensus       180 ~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~l  251 (541)
                      -.+|+.||-+.. ..+.+.+.+.++.+++++......      +.....-..+-.|.++.|.-.......++..+-++
T Consensus       176 P~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l  252 (379)
T PF06025_consen  176 PNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRL  252 (379)
T ss_pred             HHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            889999997766 556677788999999988432211      34455556677788887655544444444444333

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.33  E-value=0.16  Score=43.72  Aligned_cols=147  Identities=12%  Similarity=0.062  Sum_probs=90.1

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      .+++.|+++|+.+.++.++.+++++|+.|..-+|...+.+...  .+.-.  -...+........... ++....    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCch----H
Confidence            4678899999988779999999999999998776655533221  11000  0111122222222111 111111    2


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  271 (541)
                      ......++..|++.|.+..-..-...++.++.++..............++|.++..+++.+...++..++-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2223336788888885444444455677777777755544556777899999999999777788887777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.23  E-value=0.14  Score=45.57  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=79.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC--------CcHHHHHHHHHHHHHHh
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE--------DYPQLQFEAAWALTNIA  145 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~--------~~~~i~~~a~~~L~~l~  145 (541)
                      ....+++.+.+.....  ..+..|+..+......-++.+++.|++..|+++|..-        .+...+.+++.||..|.
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3456777787654432  5666666666543223377888889999999988531        23678999999999998


Q ss_pred             cCChhHHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 009184          146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIA  187 (541)
Q Consensus       146 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  187 (541)
                      . +......++. .+++..|+..|.+++..++..++..|..+|
T Consensus       145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8 4555666665 689999999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.17  E-value=0.15  Score=43.89  Aligned_cols=146  Identities=17%  Similarity=0.144  Sum_probs=99.5

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        75 l~~l~~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +..++..|..  ..++++-.++-++.+++...     ..-...-+-+.+-.++..++ .+-...++.+++.+--+.++..
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-----~~~~~~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~~dv~   78 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAA-----REEFKEKISDFIESLLDEGE-MDSLIIAFSALTALFPGPPDVG   78 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTTHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCCHHHH
Confidence            3455665553  56778889999988886321     11111222333344454444 5567788889999988888888


Q ss_pred             HHHH-hCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhh-HHHHHHHHHHh
Q 009184          153 KVVI-DHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSN  228 (541)
Q Consensus       153 ~~i~-~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~-~~~~a~~~L~~  228 (541)
                      ..++ ..|.++.++.++.  ..+..++..++.+|..-|.+.. +|..+.+. +++-|-..+..+++.. ++..|+-+|+.
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~-~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS-CRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH-HHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH-HHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            8777 5688899999998  6888888888888887766654 88888777 5777777775566565 77777666654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.03  E-value=0.1  Score=37.93  Aligned_cols=66  Identities=21%  Similarity=0.319  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC
Q 009184          134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG  201 (541)
Q Consensus       134 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g  201 (541)
                      ...|+|+++++++ ++.....+.+.++++.++++... +...+|-.|.++|+-++.... ..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~-G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE-GAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH-HHHHHHHcC
Confidence            4679999999998 56666666678999999998875 788999999999999986654 445544443

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.97  E-value=0.49  Score=43.79  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHccCCCCcHHH-HHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh
Q 009184           89 VQYECTTQFRKLLSIERSPPIEE-VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (541)
Q Consensus        89 ~~~~a~~~l~~l~~~~~~~~~~~-~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (541)
                      ....|++.|.-++--  +|+.+. +-+...+..|+++|.....+.++..++.+|..+..+++.+...+-+.+++..++.+
T Consensus       107 li~~aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  107 LIALALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            455677888877765  455554 44788999999999655458999999999999999999999999999999999999


Q ss_pred             hCC--CCHHHHHHHHHHHHHhhCCC
Q 009184          168 LYS--PSDDVREQAVWALGNIAGDS  190 (541)
Q Consensus       168 L~~--~~~~v~~~a~~~L~nl~~~~  190 (541)
                      +++  .+.+++-.++.+|.-...+.
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHccc
Confidence            987  46778888887777665443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.92  E-value=2.6  Score=39.73  Aligned_cols=204  Identities=12%  Similarity=0.107  Sum_probs=131.3

Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHhhcCCCh-hhHHHHHHHHHHhh
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLNGQPK-LSMLRNATWTLSNF  229 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~--g~i~~Ll~~l~~~~~-~~~~~~a~~~L~~l  229 (541)
                      ..+.++|.+..|++.+..-+-+-+..++....|+-+.....|....+.  .-.+.+-.++....+ +++.-.+...+...
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc  152 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC  152 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            345678999999999988777888888888888864333222221111  012333333422332 45555555555544


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCc----HHHHHHhhCCCChhhHHHH
Q 009184          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV----FPRLAEFLMHPSPSVLIPA  305 (541)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----l~~L~~lL~~~~~~v~~~a  305 (541)
                      .+...-.........+......++.+.-++..+|..++..+.......+..+.....    .+.--.++.+++.-++..+
T Consensus       153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs  232 (342)
T KOG1566|consen  153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS  232 (342)
T ss_pred             HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence            444332223333445555666666677788899999988876554444444444432    3335567788999999999


Q ss_pred             HHHHhHhhcCCc---hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          306 LRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       306 l~~L~nl~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      +..+|.+.-+.+   ..++.+-...-+..++.+|+.+ ...++.+|.....-..+
T Consensus       233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdk-skniQ~eAFhvFKvfvA  286 (342)
T KOG1566|consen  233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDK-SKNIQLEAFHVFKVFVA  286 (342)
T ss_pred             HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCc-cccchHHHHHHHHHHhc
Confidence            999999986554   2334454557788999999998 88999999988877777

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.88  E-value=3.2  Score=38.40  Aligned_cols=202  Identities=21%  Similarity=0.163  Sum_probs=117.4

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 009184          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV  197 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  197 (541)
                      ++.|+.-+....++..+...+.+|..++.........     ++..|..+...+....+..+...+..+-...+..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            4555554444445999999999999999854222222     34666667777777776667777777765444211   


Q ss_pred             HhcCChHHHHHhh---------cCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHH
Q 009184          198 LSQGGLVPLLAQL---------NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI-HSNDDEVLTDACWAL  267 (541)
Q Consensus       198 ~~~g~i~~Ll~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L  267 (541)
                         +.+..++..+         ..+...+.......++..+|...|.    .....++.+..++ .+.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444441         1122344555556788889988765    4466778888888 777888899999999


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCCchh-HHHHHhcCchHHHHHhhcCC
Q 009184          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQ-TQCVIEYQALPCLLNLLSGN  339 (541)
Q Consensus       268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~-~~~~~~~~~l~~L~~lL~~~  339 (541)
                      ..++....-  . +.  .....+.+-|..+ .+.+....+..++.+..+.-+. ........++..+-++..+.
T Consensus       147 ~~Lc~~~vv--d-~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEVV--D-FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhhc--c-HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            999833211  1 11  2233444444333 3455554444444444332211 11223445566666666555

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.74  E-value=1.2  Score=46.49  Aligned_cols=258  Identities=13%  Similarity=0.120  Sum_probs=159.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKV  154 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~  154 (541)
                      -.+++.++..+.+.+..=...|.+.+..    --+.++...++|.|+..+..++ ..++.. .+.-++..... .+    
T Consensus       257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~lt-pl~k~~k~ld~-~e----  326 (690)
T KOG1243|consen  257 LLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLT-PLFKLGKDLDE-EE----  326 (690)
T ss_pred             HHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhh-HHHHhhhhccc-cc----
Confidence            3444555556666665555555543321    2234555667777777766554 122222 22222222221 22    


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (541)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  234 (541)
                       ...+++|.|++++...+..+|-..+.-+-+....   ..+.+++..+++.+...+ .++++.++...+.++..|+..-.
T Consensus       327 -yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~  401 (690)
T KOG1243|consen  327 -YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLS  401 (690)
T ss_pred             -cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhc
Confidence             4557899999999999999987766666655543   334556666888888888 88899999999999888876532


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                      ..  ......+..+..+=..++..++.+..-|++.++......   +.+.-+...+.+-+.++-..-|..++..+.....
T Consensus       402 ~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  402 KR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             hh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence            11  222344555554444456778888888888877553221   1222223344555677777778888877766554


Q ss_pred             CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      ..+.   .-+...+++.+..+..+. +..+|..|..++...-.
T Consensus       477 ~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  477 YFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             ccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence            4332   223457888888888887 88888888777665544

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.72  E-value=0.85  Score=49.57  Aligned_cols=194  Identities=14%  Similarity=0.066  Sum_probs=132.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  241 (541)
                      +.|..-+.+++..-|..|+..+..+..... ........|.+..++.....+.+..+...++.+|..++..-........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            344444455667777778888877775544 1111223344566666666788899999999999999887644445566


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch-hH
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QT  320 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~  320 (541)
                      ...+|.++.-+......++..+..++-.++....       -....+.+...+++.++.++..+...+.......+. ..
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            7888888888887777776666665544443111       124567888899999999999988888887765541 11


Q ss_pred             HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHH
Q 009184          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQ  364 (541)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~  364 (541)
                      ..---.+.++.++....+. +..||..|..+++-+.. .+...+.
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~  451 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFK  451 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            1111246778888888888 89999999999988876 3444444

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.63  E-value=0.52  Score=48.87  Aligned_cols=142  Identities=15%  Similarity=0.211  Sum_probs=106.1

Q ss_pred             hHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCCch
Q 009184          244 ALPALAHLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDM  318 (541)
Q Consensus       244 ~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~  318 (541)
                      .-|.......+    +|++++..|..+|..+..-+.+.    +. .-+|.++..|. +++|.+|..|+-.+|.++-.-..
T Consensus       893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f----c~-ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~  967 (1128)
T COG5098         893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF----CS-EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT  967 (1128)
T ss_pred             hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH----HH-HHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence            34445555544    67888888888887765544332    22 45788888885 89999999999999988765443


Q ss_pred             hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHH
Q 009184          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK  398 (541)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~  398 (541)
                      ..+     ..-..|.+-|.+. +..||+.+..++.++.-.+.-.++                |-++.+...|.++|.++.
T Consensus       968 ~~d-----e~t~yLyrrL~De-~~~V~rtclmti~fLilagq~KVK----------------Gqlg~ma~~L~deda~Is 1025 (1128)
T COG5098         968 TAD-----EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQLKVK----------------GQLGKMALLLTDEDAEIS 1025 (1128)
T ss_pred             hhH-----HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccceeec----------------cchhhhHhhccCCcchHH
Confidence            332     2334677788887 899999999999999875444444                888999999999999999


Q ss_pred             HHHHHHHHHhccCC
Q 009184          399 KEAAWAISNATSGG  412 (541)
Q Consensus       399 ~~a~~aL~nl~~~~  412 (541)
                      ..|-..+..++...
T Consensus      1026 dmar~fft~~a~Kd 1039 (1128)
T COG5098        1026 DMARHFFTQIAKKD 1039 (1128)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999988754

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.62  E-value=3.3  Score=41.30  Aligned_cols=124  Identities=18%  Similarity=0.288  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhcc---CChHHHHHHHH-hCcHHHHHHhhCCCC---hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHH
Q 009184          259 VLTDACWALSYLSD---GTNDKIQAVIE-AGVFPRLAEFLMHPS---PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC  331 (541)
Q Consensus       259 v~~~a~~~L~~l~~---~~~~~~~~~~~-~g~l~~L~~lL~~~~---~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~  331 (541)
                      .+...+..+..+..   +..+...-+++ ..++..|..++.+..   +.+...|+.++..+....+.....+.+.|+.+.
T Consensus        76 llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~  155 (379)
T PF06025_consen   76 LLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDA  155 (379)
T ss_pred             HHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHH
Confidence            33444445554444   33344455666 566777777887754   678889999999999988888878889999999


Q ss_pred             HHHhhc-CC--CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc
Q 009184          332 LLNLLS-GN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE  394 (541)
Q Consensus       332 L~~lL~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~  394 (541)
                      ++..+. ..  ...++-...-.+++.||- +....+           .+.+.+.++.+++++.+++
T Consensus       156 ~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~-----------~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  156 FLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLE-----------KVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHH-----------HHHhcChHHHHHHHhCCHH
Confidence            999998 33  134555555667777776 466677           8888899999999987654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=94.61  E-value=1.5  Score=43.56  Aligned_cols=139  Identities=19%  Similarity=0.188  Sum_probs=82.0

Q ss_pred             HHHHHHhhccCC-hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC------CCChhhHHHHHHHHhHhhcCCc
Q 009184          245 LPALAHLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM------HPSPSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       245 l~~L~~lL~~~d-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~------~~~~~v~~~al~~L~nl~~~~~  317 (541)
                      .+.+..-+...| ...+..|+..+..++.........++    ...+..++.      ..+|.-+..|+..++.++....
T Consensus       212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~  287 (370)
T PF08506_consen  212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGS  287 (370)
T ss_dssp             HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS-
T ss_pred             HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhc
Confidence            344444444333 34567777788888754332222111    122333332      3567788899999999987553


Q ss_pred             h------------hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-hHHHHHHHhhchhhHHHHHhcCcHH
Q 009184          318 M------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-REQIQVIMHVHAFSIIAVIEANIIG  384 (541)
Q Consensus       318 ~------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~~~~~~l~~~~~l~  384 (541)
                      .            ....++...++|-|. - ..+..|-++..|++.+..+-..- +++..                +++|
T Consensus       288 t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~~~l~----------------~~~~  349 (370)
T PF08506_consen  288 TTKSGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPKEQLL----------------QIFP  349 (370)
T ss_dssp             -BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-HHHHH----------------HHHH
T ss_pred             cccCCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCHHHHH----------------HHHH
Confidence            2            123344445555554 1 22227889999999999987743 33322                5899


Q ss_pred             HHHHHhhcCchhHHHHHHHHH
Q 009184          385 PLVALLENAEFDIKKEAAWAI  405 (541)
Q Consensus       385 ~L~~~l~~~~~~v~~~a~~aL  405 (541)
                      .++..|.+++.-|...|+.++
T Consensus       350 ~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  350 LLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHhCCCCcchhhhhhhhC
Confidence            999999999988999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.58  E-value=9.7  Score=43.78  Aligned_cols=147  Identities=16%  Similarity=0.167  Sum_probs=92.2

Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (541)
Q Consensus       285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (541)
                      +++|.|..-|.+++..+|..|+..+|.+......+.. --........+.-+.+. +..||.++.....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7889999889999999999999999999876653321 00123455566666677 889999999999998886665444


Q ss_pred             HHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184          365 VIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  444 (541)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~  444 (541)
                                 ..   ++...+....  .|++++.....++..+..   ....-.++.. ++....+-+.+....|+..|
T Consensus       337 -----------~~---~~~~~l~~~~--~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~A  396 (1266)
T KOG1525|consen  337 -----------AS---TILLALRERD--LDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQA  396 (1266)
T ss_pred             -----------HH---HHHHHHHhhc--CChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHH
Confidence                       21   2222222222  344443322222211111   0111112223 56666667777888999999


Q ss_pred             HHHHHHHHH
Q 009184          445 LEGLENILK  453 (541)
Q Consensus       445 l~~L~~l~~  453 (541)
                      +..|..+.+
T Consensus       397 m~~LaqlYk  405 (1266)
T KOG1525|consen  397 MNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHH
Confidence            998888877

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=2.5  Score=44.16  Aligned_cols=225  Identities=14%  Similarity=0.123  Sum_probs=132.8

Q ss_pred             HHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhh----hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHH
Q 009184          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV----SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ  279 (541)
Q Consensus       205 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~----~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~  279 (541)
                      .|.+-| +-.+..++.+|+..+.++.--. |.......    ..-...+..+|.++-+.|+..|...++.+...-    -
T Consensus       178 ~l~R~L-~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----W  252 (1005)
T KOG1949|consen  178 ILWRGL-KARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF----W  252 (1005)
T ss_pred             HHHHhh-ccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----H
Confidence            344445 6778999999999999886433 44333333    344556888999999999998887776654321    1


Q ss_pred             HHHHh----CcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          280 AVIEA----GVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       280 ~~~~~----g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                      .++-.    .++..+..-+ .+...++|......|..+........  +++ .++|.+-..|.+. ...||.++...|..
T Consensus       253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~--~le-~~Lpal~~~l~D~-se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP--LLE-QLLPALRYSLHDN-SEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh--HHH-HHHHhcchhhhcc-chhHHHHHHHHHHH
Confidence            11111    2334444434 23456899999999988887554332  332 4566777777777 88999999999988


Q ss_pred             HhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC------HHHHHHHHHc--CCh
Q 009184          355 ITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT------HEQIKFLVIQ--GCI  426 (541)
Q Consensus       355 l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~------~~~~~~l~~~--~~i  426 (541)
                      |-.....              .+.+---...++..|..++.++.+..+..|.+.....+      -+.+.+|++.  .+.
T Consensus       329 ik~vra~--------------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv~~n~~A~  394 (1005)
T KOG1949|consen  329 IKAVRAA--------------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLVQMNHAAA  394 (1005)
T ss_pred             HHhhhhh--------------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHccCHHHH
Confidence            8553222              22222234455556666666666666666666553221      1234445543  234


Q ss_pred             HHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184          427 KPLCDLLVCPDPRIVTVCLEGLENIL  452 (541)
Q Consensus       427 ~~L~~lL~~~~~~~~~~~l~~L~~l~  452 (541)
                      ..+++++.......+..++..++.++
T Consensus       395 ~rf~~~l~~~~~~~~~~~~hlI~~fl  420 (1005)
T KOG1949|consen  395 RRFYQYLHEHTATNIAKLIHLIRHFL  420 (1005)
T ss_pred             HHHHHHhcccchhhHHHHHHHHHHHH
Confidence            55666665544222333444444443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.49  E-value=2.9  Score=43.78  Aligned_cols=104  Identities=17%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHH
Q 009184          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQI  363 (541)
Q Consensus       285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~  363 (541)
                      |.+..+++...+++..+|..+|.+|..++....+.-+.+ -.++...+..-+.+. .+.||.+|+.+|+.+-. ...+.+
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~v-fn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~dee~  162 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDV-FNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDEEC  162 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHH-HHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCCcc
Confidence            677788888888899999999999998887443332223 346666777777777 89999999999999974 222223


Q ss_pred             HHHHhhchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHH
Q 009184          364 QVIMHVHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISN  407 (541)
Q Consensus       364 ~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~n  407 (541)
                                       .++..+..+++. ++++||+.|+..|.+
T Consensus       163 -----------------~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  163 -----------------PVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             -----------------cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence                             255667777765 578999977665543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.42  E-value=4.4  Score=40.51  Aligned_cols=190  Identities=11%  Similarity=0.045  Sum_probs=111.6

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc--HHHHHhcCCHHHHHHhhcCCC----cH--HHHHHHHHHHHHHhcCC
Q 009184           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPP--IEEVIRSGVVPRFVEFLLRED----YP--QLQFEAAWALTNIASGT  148 (541)
Q Consensus        77 ~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~i~~g~i~~Lv~lL~~~~----~~--~i~~~a~~~L~~l~~~~  148 (541)
                      .+...+.....+.++.|+-...++....+-..  .+.+.+.-+.+.+-.+|.+.+    .|  -.+.-++.+|+.+|.. 
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-   93 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-   93 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence            45556666777889999999999987653322  334667777888888887643    12  2445566777777773 


Q ss_pred             hhHH--HHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHH
Q 009184          149 SEHT--KVVIDHGAVPIFVKLLYS-PS------DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML  219 (541)
Q Consensus       149 ~~~~--~~i~~~g~i~~L~~lL~~-~~------~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~  219 (541)
                      ++..  ..++  +.||.|+.+++. .+      -.+.+.+-.+|..+++..+. ...++..|+++.+.+.-....-..-.
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhH
Confidence            4432  2233  458999998865 22      34788899999999988664 45566788999888654222111111


Q ss_pred             HHHHHHHHhhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 009184          220 RNATWTLSNFCRGKP--QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (541)
Q Consensus       220 ~~a~~~L~~l~~~~~--~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  270 (541)
                      ..++.++.-+...-.  .........++..+..-+...+.......|..|..+
T Consensus       171 alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  171 ALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            222222222221110  111111222344444444455667778888888744

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.42  E-value=0.18  Score=51.99  Aligned_cols=132  Identities=14%  Similarity=0.137  Sum_probs=98.5

Q ss_pred             CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHH
Q 009184          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIA  376 (541)
Q Consensus       297 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~  376 (541)
                      .++.++..|.-+|..+.+-+.+..     ..-+|.++..+...++|.+|..|+-.++.++......++            
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d------------  970 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD------------  970 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH------------
Confidence            577888888888888876554433     346888999998544999999999999998875443333            


Q ss_pred             HHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184          377 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       377 l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~  455 (541)
                          ..-..|.+-|.+.+..||+.|.-.+.+++..|-      +.-.|-+..+..+|.++|..+...|-..+..+....
T Consensus       971 ----e~t~yLyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         971 ----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             ----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence                234578888888999999999999999987542      122577788888899988887777666666555443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.40  E-value=1.7  Score=47.43  Aligned_cols=186  Identities=16%  Similarity=0.120  Sum_probs=129.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i  155 (541)
                      +.+-..+.+.++..+.+|+..+...++..+  ....-...|.+-.++.....+.+..+...|+.+|..|+..........
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~  333 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY  333 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence            444456678899999999999999987542  111111245566666666555558899999999999998653332222


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC-
Q 009184          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-  234 (541)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-  234 (541)
                       ..+..|.|+.-+......+++.+..++-.++...+       -....+.++..+ ++.++.++..+...+....+... 
T Consensus       334 -~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  334 -AKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             -HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence             23677889998888888888887777776664222       112466677777 78888888776666655555432 


Q ss_pred             -CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184          235 -QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       235 -~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  272 (541)
                       .........++|.++....+.+.+|+..+..++.-+..
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence             23334567889999999989999999999998877653

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.34  E-value=6.1  Score=39.25  Aligned_cols=92  Identities=22%  Similarity=0.242  Sum_probs=59.3

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHH-HHhhCCChhhHH
Q 009184          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWAL-GNIAGDSPRCRD  195 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L-~nl~~~~~~~r~  195 (541)
                      +..+++=|.++.+..+|..++--|+.-+. +++++..+...|....+++.+.. ++..+...++.++ .-++.+.. ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            44555556644447888888888888777 69999999999999999999854 3332444443344 34444443 344


Q ss_pred             HHHhcCChHHHHHhhc
Q 009184          196 LVLSQGGLVPLLAQLN  211 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~  211 (541)
                      .+.+.+....+++++.
T Consensus       101 l~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhhchhHHHHHHHHhc
Confidence            4445555555566663

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=94.24  E-value=4  Score=41.27  Aligned_cols=254  Identities=13%  Similarity=0.036  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHhcCChhH-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC
Q 009184          134 QFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG  212 (541)
Q Consensus       134 ~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~  212 (541)
                      ...+...|..+....+.. ....++...+..|+.++.++++.-|+....+|.++.+.-...|..+... +...+.+.+..
T Consensus       107 L~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e  185 (409)
T PF01603_consen  107 LQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYE  185 (409)
T ss_dssp             HHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcC
Confidence            344555555555532221 1223344567889999999999999999999999887666677776544 56667777756


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccCCh-hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009184          213 QPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (541)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L  290 (541)
                      .....-...++.++..+..+...+- .....-....++.|.....- ..-.....++......++.....     ++..+
T Consensus       186 ~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~l  260 (409)
T PF01603_consen  186 TERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGL  260 (409)
T ss_dssp             TS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHH
T ss_pred             cccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHH
Confidence            6677778888888998888764333 23333344556666655532 23344444555444444433332     23334


Q ss_pred             HHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc
Q 009184          291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH  370 (541)
Q Consensus       291 ~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~  370 (541)
                      ++.--..+..-...-+.-+..+....+...-.-+...++..+...+.+. +..|-..|+..+.|=     ...       
T Consensus       261 lk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~~~-------  327 (409)
T PF01603_consen  261 LKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----YFL-------  327 (409)
T ss_dssp             HHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----HHH-------
T ss_pred             HHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----HHH-------
Confidence            4444334444444455556666554332211222335677788888888 888877777654432     111       


Q ss_pred             hhhHHHHHhc---CcHHHHHHHhhc-----CchhHHHHHHHHHHHhccC
Q 009184          371 AFSIIAVIEA---NIIGPLVALLEN-----AEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       371 ~~~~~~l~~~---~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~~  411 (541)
                           .++..   .++|.++..+..     -+..|+..|..++.-+...
T Consensus       328 -----~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  328 -----SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             -----HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred             -----HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence                 22211   256666666533     2567888888887777653

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=94.23  E-value=4.4  Score=37.47  Aligned_cols=204  Identities=16%  Similarity=0.095  Sum_probs=116.5

Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009184          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (541)
Q Consensus       203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  282 (541)
                      ++.++..+.+..++..+...+.+|..++..+.    .....++..+..+...+..+...-+...+..+....+...    
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            34455556678899999999999999998861    3335566777777777776665566666666665544322    


Q ss_pred             HhCcHHHHHHh-----h---C--CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh-cCCCchhHHHHHHHH
Q 009184          283 EAGVFPRLAEF-----L---M--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWT  351 (541)
Q Consensus       283 ~~g~l~~L~~l-----L---~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~a~~~  351 (541)
                        +.+..++..     .   .  +..+........++..++...++..     ...++.+..+| .+. ++.++..++.+
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~-~~~~~alale~  145 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSC-DEVAQALALEA  145 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence              233333333     1   1  1223444444567777777666532     23567788888 666 88888999999


Q ss_pred             HHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhccCC-CHHHHHHHHHcCChHHH
Q 009184          352 VSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGG-THEQIKFLVIQGCIKPL  429 (541)
Q Consensus       352 L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L  429 (541)
                      +..++..  +.++            +.  .....+..-+..+ .+.+.+..+..+..+..+. +.+.... ....++..+
T Consensus       146 l~~Lc~~--~vvd------------~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~-~~~~~l~~l  208 (234)
T PF12530_consen  146 LAPLCEA--EVVD------------FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEE-LKRQILQLL  208 (234)
T ss_pred             HHHHHHH--hhcc------------HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhH-HHHHHHHHH
Confidence            9999842  2221            00  1222233333332 4555555444444443332 2222222 344567777


Q ss_pred             hhhcCCCChH
Q 009184          430 CDLLVCPDPR  439 (541)
Q Consensus       430 ~~lL~~~~~~  439 (541)
                      -++..+.+.+
T Consensus       209 W~~~~~~~~~  218 (234)
T PF12530_consen  209 WEYTSSSDVN  218 (234)
T ss_pred             Hhhccccccc
Confidence            7777666643

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.14  E-value=6.9  Score=39.09  Aligned_cols=264  Identities=14%  Similarity=0.122  Sum_probs=137.6

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCC-cHHHHHhcCCHHHHHHhhc----C------CCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           84 SNDSGVQYECTTQFRKLLSIERSP-PIEEVIRSGVVPRFVEFLL----R------EDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~-~~~~~i~~g~i~~Lv~lL~----~------~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.+...+..|...|.+.+....+. ..+.+.+  -++.++++++    +      +.+..+..+|+.+|+.+.. +++..
T Consensus         4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~   80 (372)
T PF12231_consen    4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV   80 (372)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence            445566677777777666654332 3333322  2445555443    1      1136788999999999887 34444


Q ss_pred             HHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---C-CChhhHHHHHH
Q 009184          153 KVVIDHG---AVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---G-QPKLSMLRNAT  223 (541)
Q Consensus       153 ~~i~~~g---~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~-~~~~~~~~~a~  223 (541)
                      ..+-+.-   ++...+..+..  .+..+....+|+|..=-     +...++....+..++..+.   + -++..+....+
T Consensus        81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~-----f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL  155 (372)
T PF12231_consen   81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQK-----FSPKIMTSDRVERLLAALHNIKNRFPSKSIISERL  155 (372)
T ss_pred             hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCCcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence            4333211   34445555544  45677777777776422     2122333334455554442   2 45677788888


Q ss_pred             HHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc--cCChH-HHHH---HHHh----C-----cHH
Q 009184          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS--DGTND-KIQA---VIEA----G-----VFP  288 (541)
Q Consensus       224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~--~~~~~-~~~~---~~~~----g-----~l~  288 (541)
                      .++.+|....|..-......-+|.++..+-+....++..|...+..+.  -.... ....   ..+.    +     +.+
T Consensus       156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  235 (372)
T PF12231_consen  156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCE  235 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHH
Confidence            888888877554433334446677777766667777666555544433  11111 1111   1111    2     333


Q ss_pred             HHHHhhCCCChhhHHHHHHH-HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          289 RLAEFLMHPSPSVLIPALRT-VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       289 ~L~~lL~~~~~~v~~~al~~-L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      ++..++.+.+.....+-+|. +.-+. +......--.-...+...-..+.++ ++.+|.+|..+...+..
T Consensus       236 ~L~~mi~~~~~~~~a~~iW~~~i~LL-~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy  303 (372)
T PF12231_consen  236 RLKEMIKSKDEYKLAMQIWSVVILLL-GSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIY  303 (372)
T ss_pred             HHHHHHhCcCCcchHHHHHHHHHHHh-CCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            45556655332222222222 22222 2221110111124555566677777 89999988877666654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.03  E-value=6.6  Score=38.49  Aligned_cols=156  Identities=17%  Similarity=0.145  Sum_probs=108.8

Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHhHhhc-CCchhHHHHHhc--CchHHHHHhhcCCC----c--------hhHHHHHHHH
Q 009184          287 FPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEY--QALPCLLNLLSGNY----K--------KSIKKEACWT  351 (541)
Q Consensus       287 l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~--~~l~~L~~lL~~~~----~--------~~v~~~a~~~  351 (541)
                      ++.+.+.|......+..++++.|..++. ........++..  --.+.+.+++....    .        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7888889998888899999999999999 554666666543  12344555553321    1        2788777766


Q ss_pred             HHHHhc-CChHHHHHHHhhchhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC---HHHHHHHHHcCCh
Q 009184          352 VSNITA-GNREQIQVIMHVHAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGT---HEQIKFLVIQGCI  426 (541)
Q Consensus       352 L~nl~~-~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~---~~~~~~l~~~~~i  426 (541)
                      +..+.. +++....           .++ +.+.+..+++-|..+++++....+.+|..-+....   ....-.+.....+
T Consensus       138 ~Lsfl~~~~~~~~~-----------~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L  206 (330)
T PF11707_consen  138 WLSFLSSGDPELKR-----------DLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTL  206 (330)
T ss_pred             HHHHHccCCHHHHH-----------HHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHH
Confidence            555555 6666666           555 56778899999998889999999999986443221   2233334456678


Q ss_pred             HHHhhhcCCCCh----HHHHHHHHHHHHHHH
Q 009184          427 KPLCDLLVCPDP----RIVTVCLEGLENILK  453 (541)
Q Consensus       427 ~~L~~lL~~~~~----~~~~~~l~~L~~l~~  453 (541)
                      ..|..+....++    .+...+-+.|..++.
T Consensus       207 ~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT  237 (330)
T PF11707_consen  207 SQLASLYSRDGEDEKSSVADLVHEFLLALCT  237 (330)
T ss_pred             HHHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence            899998888777    677777777766663

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.65  E-value=6.8  Score=46.87  Aligned_cols=265  Identities=11%  Similarity=0.109  Sum_probs=141.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCC---ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHH
Q 009184          170 SPSDDVREQAVWALGNIAGD---SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP  246 (541)
Q Consensus       170 ~~~~~v~~~a~~~L~nl~~~---~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~  246 (541)
                      +++..+...|+..|..++..   .++....-.+..++.++..++....+.++++.++.++.++......    .+..+..
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence            34566777777777676631   1111111223446788888887778889999999999988765421    2223444


Q ss_pred             HHHHhh----ccCChhHHHHHHHHHHHhccCChHHHHHHHH--h----CcHHHHHHhhCCC-ChhhHHHHHHHHhHhhc-
Q 009184          247 ALAHLI----HSNDDEVLTDACWALSYLSDGTNDKIQAVIE--A----GVFPRLAEFLMHP-SPSVLIPALRTVGNIVT-  314 (541)
Q Consensus       247 ~L~~lL----~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~--~----g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~-  314 (541)
                      .+..++    ...++.+...+..++..+....-   ..+..  .    .++..+..+.... +.++-..|+..|.+++. 
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            444444    34567777777777776653211   11110  1    2334444444333 35566666666664421 


Q ss_pred             ---CCc-----------------------hhH-----HHHHhcCchHHHHH---hhcCCCchhHHHHHHHHHHHHhcC--
Q 009184          315 ---GDD-----------------------MQT-----QCVIEYQALPCLLN---LLSGNYKKSIKKEACWTVSNITAG--  358 (541)
Q Consensus       315 ---~~~-----------------------~~~-----~~~~~~~~l~~L~~---lL~~~~~~~v~~~a~~~L~nl~~~--  358 (541)
                         +.-                       ...     .......+++.|..   +..+. +++||..|+.+|-.+...  
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhh
Confidence               000                       000     00001234444443   34555 899999999999888752  


Q ss_pred             ---ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC------------------c--------hhHHHHHHHHHHHhc
Q 009184          359 ---NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA------------------E--------FDIKKEAAWAISNAT  409 (541)
Q Consensus       359 ---~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~------------------~--------~~v~~~a~~aL~nl~  409 (541)
                         +++...           .++. +++-+++..+...                  +        .+....|+..+.++.
T Consensus      1380 ~~Fs~~~W~-----------~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf 1447 (1780)
T PLN03076       1380 HLFSLPLWE-----------RVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF 1447 (1780)
T ss_pred             ccCCHHHHH-----------HHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence               222222           3333 4555555554321                  0        122333444444443


Q ss_pred             cCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184          410 SGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       410 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~  456 (541)
                      .. --+.+..+. .+++..|..++..++..+......+|.+|+..+.
T Consensus      1448 t~-fFd~L~~~L-~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076       1448 VK-FYPTVNPLL-KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred             HH-HHHHHHHHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence            31 111112211 2566677777778888888889999999886543

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.63  E-value=1  Score=42.24  Aligned_cols=146  Identities=16%  Similarity=0.173  Sum_probs=105.2

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  321 (541)
                      ...+...+..|.+.|.+...+.+..+..|+....+.....+. .++-.+++-+++....+...||.+++.+.+.-.....
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677788899999999999999998776655444443 5677778888888899999999999999876654443


Q ss_pred             HHHhcCchHHHHHhh-cCC--CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHH
Q 009184          322 CVIEYQALPCLLNLL-SGN--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK  398 (541)
Q Consensus       322 ~~~~~~~l~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~  398 (541)
                      ..     ++.++..| ...  .+.-++..|-.+|..+..+-..+                  .+++.|+..+....+.++
T Consensus       166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------------------~~L~~L~~~~~~~n~r~r  222 (334)
T KOG2933|consen  166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------------------KLLRKLIPILQHSNPRVR  222 (334)
T ss_pred             HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------------------HHHHHHHHHHhhhchhhh
Confidence            32     23333333 221  14568899999999888743332                  246777777888889999


Q ss_pred             HHHHHHHHHhccC
Q 009184          399 KEAAWAISNATSG  411 (541)
Q Consensus       399 ~~a~~aL~nl~~~  411 (541)
                      ..++.++.++...
T Consensus       223 ~~a~~~~~~~v~r  235 (334)
T KOG2933|consen  223 AKAALCFSRCVIR  235 (334)
T ss_pred             hhhhcccccccee
Confidence            9998888887653

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=93.61  E-value=4.2  Score=42.31  Aligned_cols=320  Identities=14%  Similarity=0.175  Sum_probs=162.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      ++..+=+.+.++++.++--|+-.+.-..++-.++ .     ..++-.|.+.+++++ ..++..|+.-|+-.-+++  +++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            4555555666666655555554443222221111 0     113556677788877 788888887777665543  233


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      .+..     .|..++.+  ...++...|..+|+.+...+..  ..+ .+.++..++..=.........+-....|..+.-
T Consensus       487 ~V~~-----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVLE-----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHHH-----HHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            3321     34455555  3356777788888887644321  111 111344444432111223333333334444433


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC---hhhHHHHHHH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS---PSVLIPALRT  308 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~---~~v~~~al~~  308 (541)
                      +..        ..+...+.-+..-...+...+-..+..++.....+.-.+-+    ..+..+-....   ..-...|+.-
T Consensus       559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence            321        12222222222222233332222222222221111111111    22222222221   1223356666


Q ss_pred             HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA  388 (541)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~  388 (541)
                      ++-++.+.+-..+..     +..+-++|..+ ++.+|+..=.+++-++..+|. .                 +++..|-+
T Consensus       627 iAliAMgeeig~eM~-----lR~f~h~l~yg-e~~iRravPLal~llsvSNPq-~-----------------~vlDtLsk  682 (878)
T KOG2005|consen  627 IALIAMGEEIGSEMV-----LRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQ-V-----------------NVLDTLSK  682 (878)
T ss_pred             hhhhhhhhhhhhHHH-----HHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCc-c-----------------hHHHHHHH
Confidence            666666666444433     44677788888 999999999999988876654 3                 36778888


Q ss_pred             HhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc-CCCChHHHHHHHHHHHHH
Q 009184          389 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VCPDPRIVTVCLEGLENI  451 (541)
Q Consensus       389 ~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~~~~~~~~~~l~~L~~l  451 (541)
                      .....|.++...++.+++-+-.+.+...+..     +++.|.++- +.++.-.+..+..+|..+
T Consensus       683 ~shd~D~eva~naIfamGLiGAGTnNARla~-----mLrqlaSYyyKd~~~Lf~vriAQGL~hl  741 (878)
T KOG2005|consen  683 FSHDGDLEVAMNAIFAMGLIGAGTNNARLAQ-----MLRQLASYYYKDSKALFVVRIAQGLVHL  741 (878)
T ss_pred             hccCcchHHHHHHHHHhccccCCcchHHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence            8888899999999999998877655444333     334444432 223333333444555443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.42  E-value=2.1  Score=38.00  Aligned_cols=146  Identities=16%  Similarity=0.157  Sum_probs=93.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      -++.+++...+++..++..|+..+..++..+=..|.+      .+|.|+.+..+++ +.++..|...+..+....+....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence            3678888888999999999999999988765334443      5999999999988 99999999999999886555544


Q ss_pred             HHHhCCChHHHHHh---hCCCCH-HH---HHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-------ChhhHH
Q 009184          154 VVIDHGAVPIFVKL---LYSPSD-DV---REQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-------PKLSML  219 (541)
Q Consensus       154 ~i~~~g~i~~L~~l---L~~~~~-~v---~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-------~~~~~~  219 (541)
                      .-...| +..-..+   +..+.. ..   ....+..+..+...+...|..+     +..+++.+...       ....-.
T Consensus        82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l  155 (187)
T PF12830_consen   82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL  155 (187)
T ss_pred             HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence            433333 2222222   222111 11   4455666667776555556554     45566655322       123345


Q ss_pred             HHHHHHHHhhhcC
Q 009184          220 RNATWTLSNFCRG  232 (541)
Q Consensus       220 ~~a~~~L~~l~~~  232 (541)
                      ...+++..||+.-
T Consensus       156 ~~~~Fla~nLA~l  168 (187)
T PF12830_consen  156 DFLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHHhcC
Confidence            5555566666544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.31  E-value=1.7  Score=45.56  Aligned_cols=210  Identities=14%  Similarity=0.133  Sum_probs=123.8

Q ss_pred             hhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009184          215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (541)
Q Consensus       215 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL  294 (541)
                      ++.-+..-+..|..+.-+.|  .......++|.|+..+.+  ....-..+-.+..++...+.   ......+++.|..++
T Consensus       286 dn~qKs~Flk~Ls~~ip~fp--~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s~---~~~~~~~~p~l~pi~  358 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTFP--ARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLSQ---NEFGPKMLPALKPIY  358 (700)
T ss_pred             CcHHHHHHHHHHHHhhccCC--HHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccch---hhhhhhhhHHHHHHh
Confidence            33334444445555554432  223446778887777733  22333333333344433321   123346778888888


Q ss_pred             CCCC-hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhh
Q 009184          295 MHPS-PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS  373 (541)
Q Consensus       295 ~~~~-~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~  373 (541)
                      +..+ ..+....+.-+.-|....+   ..-+...+++.|...+++. +..++..++..+..++..-+.            
T Consensus       359 ~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD~------------  422 (700)
T KOG2137|consen  359 SASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDS-DVQIQELALQILPTVAESIDV------------  422 (700)
T ss_pred             ccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhccH------------
Confidence            6432 2222222222222222111   1223457888999999998 999999999999988762121            


Q ss_pred             HHHHHhcCcHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184          374 IIAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  452 (541)
Q Consensus       374 ~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~  452 (541)
                        ..+..-++|.|..+.. ..+..++..++-|+..++..     +....--..+.++....+..|+.++...+.+..++.
T Consensus       423 --~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  423 --PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             --HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence              4556678888888743 45789999999999988732     111112234667777778889998888888887776


Q ss_pred             Hh
Q 009184          453 KV  454 (541)
Q Consensus       453 ~~  454 (541)
                      -.
T Consensus       496 ~~  497 (700)
T KOG2137|consen  496 LI  497 (700)
T ss_pred             hh
Confidence            43

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.29  E-value=3.5  Score=44.52  Aligned_cols=170  Identities=19%  Similarity=0.210  Sum_probs=92.0

Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccC---Ch
Q 009184          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS----NDDEVLTDACWALSYLSDG---TN  275 (541)
Q Consensus       203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~----~d~~v~~~a~~~L~~l~~~---~~  275 (541)
                      +..+..++.. ....-. .+.+.|..+......+.    ...+..+..++.+    .++.+...|+-+++.+...   ..
T Consensus       397 v~~i~~~I~~-~~~~~~-ea~~~l~~l~~~~~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~  470 (618)
T PF01347_consen  397 VKFIKDLIKS-KKLTDD-EAAQLLASLPFHVRRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNS  470 (618)
T ss_dssp             HHHHHHHHHT-T-S-HH-HHHHHHHHHHHT---------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHc-CCCCHH-HHHHHHHHHHhhcCCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecc
Confidence            4455555533 222212 23344444444332333    3344555555543    3556777777777766521   10


Q ss_pred             ------HHHHHHHHhCcHHHHHHhhC----CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC--Cchh
Q 009184          276 ------DKIQAVIEAGVFPRLAEFLM----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--YKKS  343 (541)
Q Consensus       276 ------~~~~~~~~~g~l~~L~~lL~----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~~  343 (541)
                            ......+...+++.+...+.    ..+..-+..++++|||+...           ..++.|..++...  ....
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~  539 (618)
T PF01347_consen  471 DSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHF  539 (618)
T ss_dssp             ----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HH
T ss_pred             cccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchH
Confidence                  00011122245666666654    45667788899999999641           2455666666544  2678


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--CchhHHHHHHHHHHHh
Q 009184          344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNA  408 (541)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl  408 (541)
                      +|..|+|+|..++...++.+.                   +.|+.++.+  .++++|..|..+|...
T Consensus       540 ~R~~Ai~Alr~~~~~~~~~v~-------------------~~l~~I~~n~~e~~EvRiaA~~~lm~~  587 (618)
T PF01347_consen  540 IRVAAIQALRRLAKHCPEKVR-------------------EILLPIFMNTTEDPEVRIAAYLILMRC  587 (618)
T ss_dssp             HHHHHHHTTTTGGGT-HHHHH-------------------HHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcCcHHHH-------------------HHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence            999999999999776665444                   556666665  3688999998877764

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.18  E-value=14  Score=39.57  Aligned_cols=273  Identities=11%  Similarity=0.103  Sum_probs=132.9

Q ss_pred             HHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh--CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hH
Q 009184          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID--HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CR  194 (541)
Q Consensus       119 ~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~r  194 (541)
                      ..++++++..++--++..+++.+.-...+-.-..+.+..  .+....+.+++.. ..-+.+...+..|+.+.....+ .+
T Consensus       529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~  608 (978)
T KOG1993|consen  529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA  608 (978)
T ss_pred             HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence            345566666644566677777776666543222222221  1233344445544 4456667777777777643222 11


Q ss_pred             HHHHhcCChHHHHHhh-cCC-ChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChh---HHHHHHHHHHH
Q 009184          195 DLVLSQGGLVPLLAQL-NGQ-PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTDACWALSY  269 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l-~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~~L~~  269 (541)
                      ....   .+-.++..+ ..+ +.+-++...+.++.++...-.........-++|.+-....-+.++   ..+++...-.-
T Consensus       609 P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~  685 (978)
T KOG1993|consen  609 PYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLT  685 (978)
T ss_pred             HHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHH
Confidence            1111   111122222 222 344456666778888877643333333333334333333222222   34443322222


Q ss_pred             hccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc-CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHH
Q 009184          270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT-GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA  348 (541)
Q Consensus       270 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a  348 (541)
                      ...+.+.....++  +++|.+...+......++ .++.++....- .+.... .-...|++..+..++.+- ..+-....
T Consensus       686 ~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dv-r~egl~av  760 (978)
T KOG1993|consen  686 TLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDV-RNEGLQAV  760 (978)
T ss_pred             HHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence            2222221111122  567777777755443322 23333322221 122111 112346777788887665 44455556


Q ss_pred             HHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc--CchhHHHHHHHHHHHhccC
Q 009184          349 CWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN--AEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       349 ~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~  411 (541)
                      +.++..+...++ ...           .+...++++.+...+-.  +.|.+-..-+..++.+...
T Consensus       761 Lkiveili~t~~-il~-----------~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~  813 (978)
T KOG1993|consen  761 LKIVEILIKTNP-ILG-----------SLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR  813 (978)
T ss_pred             HHHHHHHHhhhH-HHH-----------hhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence            666666665444 444           66677888888776533  3466777777777777665

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=93.05  E-value=4.4  Score=43.24  Aligned_cols=136  Identities=19%  Similarity=0.191  Sum_probs=82.7

Q ss_pred             hchHHHHHHhhccC----ChhHHHHHHHHHHHhcc----CChHHHHHHHHhCcHHHHHHhh----CCCChhhHHHHHHHH
Q 009184          242 SPALPALAHLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVFPRLAEFL----MHPSPSVLIPALRTV  309 (541)
Q Consensus       242 ~~~l~~L~~lL~~~----d~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~l~~L~~lL----~~~~~~v~~~al~~L  309 (541)
                      ...+..+..++.++    ...+...++-+++.+..    ..+..-..+ -..+++.+...|    ...+...+..++++|
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  470 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKAL  470 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence            34566666666643    45566777777766652    221100111 123555555554    334555677889999


Q ss_pred             hHhhcCCchhHHHHHhcCchHHHHHhhcC--CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSG--NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      ||+....           .++.+...+..  .....+|..|+|+|..++...+..++                   +.|+
T Consensus       471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~-------------------~~l~  520 (574)
T smart00638      471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ-------------------EVLL  520 (574)
T ss_pred             hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH-------------------HHHH
Confidence            9987532           23344444441  12568999999999999875555444                   4566


Q ss_pred             HHhhc--CchhHHHHHHHHHHHh
Q 009184          388 ALLEN--AEFDIKKEAAWAISNA  408 (541)
Q Consensus       388 ~~l~~--~~~~v~~~a~~aL~nl  408 (541)
                      .++.+  .++++|..|+.+|...
T Consensus       521 ~i~~n~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      521 PIYLNRAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             HHHcCCCCChHHHHHHHHHHHhc
Confidence            66655  4689999998888765

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.86  E-value=3.8  Score=43.12  Aligned_cols=136  Identities=15%  Similarity=0.181  Sum_probs=95.0

Q ss_pred             hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCc
Q 009184          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~  317 (541)
                      .....++|.|..-+.+.+..++..++..+...++.-+.   .+++.-++|++..+. .+.+..++..++-|++.++..-+
T Consensus       385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD  461 (700)
T KOG2137|consen  385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD  461 (700)
T ss_pred             HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence            34567888888888888999999999999888765542   255667888887764 56778899999999999983222


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc
Q 009184          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE  394 (541)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~  394 (541)
                      ..  .++  ..+..+....+.. ++.+......+..++....... .           .++..+++|.++-+...+.
T Consensus       462 ~~--~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~-----------ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  462 KA--AVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-V-----------EVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HH--HhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-e-----------eeehhhhhhhhhhhhhccc
Confidence            11  121  2344555556666 8888877777777776633332 2           4555688898888877664

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=92.75  E-value=14  Score=38.28  Aligned_cols=258  Identities=12%  Similarity=0.061  Sum_probs=131.0

Q ss_pred             hhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 009184           81 GVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (541)
Q Consensus        81 ~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g  159 (541)
                      .+.. ...+.|..++..+..+.........  ..    =..+...+.....++.-..-+.+|..++.+..+.  ...+.+
T Consensus        36 Li~~~~p~e~R~~~~~ll~~~i~~~~~~~~--~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~  107 (464)
T PF11864_consen   36 LIDPNQPSEARRAALELLIACIKRQDSSSG--LM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYE  107 (464)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHccccccH--HH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccc
Confidence            3443 3467888888888888765422111  11    1122233343322332223334444444433333  224567


Q ss_pred             ChHHHHHhhCCC---------------------------CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC
Q 009184          160 AVPIFVKLLYSP---------------------------SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG  212 (541)
Q Consensus       160 ~i~~L~~lL~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~  212 (541)
                      +.+.|...+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+..+
T Consensus       108 i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~  187 (464)
T PF11864_consen  108 IGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKS  187 (464)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Confidence            778777776321                           12223344445555554332211111112244444445434


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH
Q 009184          213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE  292 (541)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~  292 (541)
                      +.++.....++.++-.+......+ ......++..|......  .+....+-.++.+|+......       ..+..|..
T Consensus       188 Ts~~~di~~~L~vldaii~y~~iP-~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~  257 (464)
T PF11864_consen  188 TSSEDDIEACLSVLDAIITYGDIP-SESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCD  257 (464)
T ss_pred             cCcHHHHHHHHHHHHHHHHcCcCC-hHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHH
Confidence            445555556666665555443111 12223334443333222  244455556777777543322       24566777


Q ss_pred             hhCC------CChhhHHHHHHHHhHhhcCCchhHHHHHh-c--CchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          293 FLMH------PSPSVLIPALRTVGNIVTGDDMQTQCVIE-Y--QALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       293 lL~~------~~~~v~~~al~~L~nl~~~~~~~~~~~~~-~--~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      +|.+      .+..+..-|+..++.+..+..+....-+. .  -+++.+...++.. ++.+-.+....+.++..
T Consensus       258 iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  258 ILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence            7732      23456778899999888777332222221 1  2778888888887 77777788888887773

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=92.58  E-value=6.6  Score=36.95  Aligned_cols=218  Identities=15%  Similarity=0.127  Sum_probs=120.6

Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 009184          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVL  198 (541)
Q Consensus       121 Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~  198 (541)
                      |=..|.+++ +.+|..|+.+|+.+...-+...   +...-+..|+.++.+  .+......++.++..+.....-..... 
T Consensus         4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-   78 (262)
T PF14500_consen    4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-   78 (262)
T ss_pred             hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence            445678887 9999999999999887544321   222224555555433  455555556777777763332111110 


Q ss_pred             hcCChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCChH
Q 009184          199 SQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-NDDEVLTDACWALSYLSDGTND  276 (541)
Q Consensus       199 ~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~  276 (541)
                       ..++..+..... +......+..+...+..+...........-...+..+++.+.. .||+-+.-+...+..+...-+-
T Consensus        79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence             012223332221 1223445666677777776653211122224566667777664 4787666666666655433220


Q ss_pred             HHHHHHHhCcHHHHHHhhC--------C-C-Ch--hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhH
Q 009184          277 KIQAVIEAGVFPRLAEFLM--------H-P-SP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI  344 (541)
Q Consensus       277 ~~~~~~~~g~l~~L~~lL~--------~-~-~~--~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v  344 (541)
                             ....+.+...+.        . + ++  -.+..--..|.+....++...     .-.+|.|+.-|.++ .+.+
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~~  224 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPSV  224 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcHH
Confidence                   123333333331        1 1 21  233344445555555444333     34688999999998 8889


Q ss_pred             HHHHHHHHHHHhc
Q 009184          345 KKEACWTVSNITA  357 (541)
Q Consensus       345 ~~~a~~~L~nl~~  357 (541)
                      |..++.+|..++.
T Consensus       225 K~D~L~tL~~c~~  237 (262)
T PF14500_consen  225 KLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999887

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.42  E-value=2.5  Score=45.71  Aligned_cols=195  Identities=20%  Similarity=0.212  Sum_probs=120.2

Q ss_pred             HHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHH--HHHHhhccCCh-h
Q 009184          182 ALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP--ALAHLIHSNDD-E  258 (541)
Q Consensus       182 ~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~--~L~~lL~~~d~-~  258 (541)
                      +|+++....+.....+++.|+...+...+......+++..++..+.+++...+..........+.  .+..++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            67788888888888888999999999999777888999999999999998764433333222222  33334444444 7


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHH-HHHhhc
Q 009184          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC-LLNLLS  337 (541)
Q Consensus       259 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~-L~~lL~  337 (541)
                      ....++..|+.+....++.......               +.+......++........   ..... ..+.. +.+++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~~~---~~~~~-~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTSEI---RVIND-RSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCccce---eehhh-hhcchhHHHHhc
Confidence            7777887777776544321111111               1122222233333322221   11111 22222 555665


Q ss_pred             CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHH
Q 009184          338 GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAIS  406 (541)
Q Consensus       338 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~  406 (541)
                      .+..+..+.-|.|++.+++...++..+           .+.+.++++.+.+.-... ..+++.++...+-
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCK-----------LVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhh-----------hhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence            554678889999999999998787776           677888888877764332 4455555554443

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.40  E-value=4.7  Score=42.26  Aligned_cols=230  Identities=13%  Similarity=0.071  Sum_probs=131.1

Q ss_pred             HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC---CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc--
Q 009184          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK---PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD--  272 (541)
Q Consensus       198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~--  272 (541)
                      ++.|++..++..-..-+...+....-.+|+.+....   .........-.-|.|..-|+-.+..|+.+|+..+.++--  
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            356667766655433333334444444455554432   111122223344667777888999999999999988752  


Q ss_pred             CCh---HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcC----chHHHHHhhcCCCchhHH
Q 009184          273 GTN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ----ALPCLLNLLSGNYKKSIK  345 (541)
Q Consensus       273 ~~~---~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~----~l~~L~~lL~~~~~~~v~  345 (541)
                      +++   +..+.+++ .-...+.++|.++.+.+|..|..-++.+.+.-    ..++-..    ++..+..-+..+...+||
T Consensus       206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR  280 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVR  280 (1005)
T ss_pred             CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence            222   22333444 34678899999999999999988777766421    1222222    333444444444356788


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCC
Q 009184          346 KEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC  425 (541)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~  425 (541)
                      ......|..+......  .           .+++ .++|.|=..|.+....||..+...|..+-..    ....+.+---
T Consensus       281 ~svf~gl~~~l~np~s--h-----------~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v----ra~~f~~I~~  342 (1005)
T KOG1949|consen  281 CSVFKGLPMILDNPLS--H-----------PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV----RAAKFWKICP  342 (1005)
T ss_pred             hhHhcCcHHHHcCccc--h-----------hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh----hhhhhhcccc
Confidence            8888888877763221  1           2222 3556666677777888998888888776331    1111122223


Q ss_pred             hHHHhhhcCCCChHHHHHHHHHHHH
Q 009184          426 IKPLCDLLVCPDPRIVTVCLEGLEN  450 (541)
Q Consensus       426 i~~L~~lL~~~~~~~~~~~l~~L~~  450 (541)
                      ++.++.-|..++..+....+..|-+
T Consensus       343 ~d~~l~~L~~d~~~v~rr~~~li~~  367 (1005)
T KOG1949|consen  343 MDHILVRLETDSRPVSRRLVSLIFN  367 (1005)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHH
Confidence            4555566666666555544444433

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=92.35  E-value=9.9  Score=35.75  Aligned_cols=221  Identities=13%  Similarity=0.091  Sum_probs=131.6

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184          163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (541)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  241 (541)
                      .|-..|.++++.+|..|+.+|+.+...-+.   ..+...-+..|+..+. +-.|......++.++..|.... .......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~---~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPP---DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCH---hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence            355678889999999999999998765542   1122223455555542 1235555666677777777443 2222223


Q ss_pred             hchHHHHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCch
Q 009184          242 SPALPALAHLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM  318 (541)
Q Consensus       242 ~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~  318 (541)
                      ..++..+.+-..  +--...+..+...+..+.....+..+ -...+++..++..+.. .+|.-...+...+..+...-+.
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            334444433222  22345677788888877765443332 1223677788888854 5777777777777777654431


Q ss_pred             hHHHHHhcCchHHHHHhhc--------CCC-ch--hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          319 QTQCVIEYQALPCLLNLLS--------GNY-KK--SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~--------~~~-~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                             ....+-+...+.        .+. ++  -.+..-...|.++...++....                -.+|.|+
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~----------------~~~p~Ll  214 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP----------------FAFPLLL  214 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH----------------HHHHHHH
Confidence                   122223333321        111 22  2445555666666655454333                5789999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhccC
Q 009184          388 ALLENAEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       388 ~~l~~~~~~v~~~a~~aL~nl~~~  411 (541)
                      +-|.++.+.+|..++.+|..++..
T Consensus       215 eKL~s~~~~~K~D~L~tL~~c~~~  238 (262)
T PF14500_consen  215 EKLDSTSPSVKLDSLQTLKACIEN  238 (262)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999988753

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=92.35  E-value=2.8  Score=36.78  Aligned_cols=155  Identities=14%  Similarity=0.190  Sum_probs=95.0

Q ss_pred             hHHHHHHHHhHhhcCCchh-H----HHHH------hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhh
Q 009184          301 VLIPALRTVGNIVTGDDMQ-T----QCVI------EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV  369 (541)
Q Consensus       301 v~~~al~~L~nl~~~~~~~-~----~~~~------~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  369 (541)
                      +|..|+.+|..++...+.. .    ..++      ..+.-+.|+..+..+.++++|..|+.++..+..+......+--+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            6778888888887762211 1    1111      112333444444333399999999999999999866544322111


Q ss_pred             ----chhhH----HHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHH
Q 009184          370 ----HAFSI----IAVIEANIIGPLVALLENA-EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI  440 (541)
Q Consensus       370 ----~~~~~----~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  440 (541)
                          .+|.-    ...+=..+...|+..+..+ +..+....+.++..++........+.=.-..++..+..++.+.|+++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                13310    0111113455667777665 67888899999999988765444332111234556666777899999


Q ss_pred             HHHHHHHHHHHHHhh
Q 009184          441 VTVCLEGLENILKVG  455 (541)
Q Consensus       441 ~~~~l~~L~~l~~~~  455 (541)
                      +..++.++..++...
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999998887644

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.17  E-value=0.69  Score=43.38  Aligned_cols=144  Identities=17%  Similarity=0.168  Sum_probs=92.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  241 (541)
                      ...+..|.+.+.+....++..+..++...++.....+.. .+..+++-+ ++....+.+.|+.++..+............
T Consensus        91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvksl-KNlRS~VsraA~~t~~difs~ln~~i~~~l  168 (334)
T KOG2933|consen   91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSL-KNLRSAVSRAACMTLADIFSSLNNSIDQEL  168 (334)
T ss_pred             HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555666666666667777777776555544443333 456666667 777888999999999888876432222222


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                      .+++-.|+.--..++.-|++++-.+|..+......       ..+++.|...+++.++.++..++.+..+...
T Consensus       169 d~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~  234 (334)
T KOG2933|consen  169 DDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI  234 (334)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence            22222222222233455889999999887755332       2467788888999999999888887776653

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.01  E-value=7.3  Score=39.72  Aligned_cols=165  Identities=12%  Similarity=0.071  Sum_probs=110.4

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC----hhhHHHHHHHHhHhhcCCchhH
Q 009184          245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS----PSVLIPALRTVGNIVTGDDMQT  320 (541)
Q Consensus       245 l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~----~~v~~~al~~L~nl~~~~~~~~  320 (541)
                      ...+...+.+++...+..+...+..++.. ......++....+..|.+++.++.    ..+...+++++..+....- ..
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-vs  162 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-VS  162 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-ee
Confidence            34566777777777777788888887754 445667888888999999997654    3566666777666654332 11


Q ss_pred             HHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHH
Q 009184          321 QCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK  399 (541)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~  399 (541)
                      ...+...++.....+..-. .+..+-..|+..|-++..++....+           .+.+.--+..|+..+...+..++.
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~-----------~v~eev~i~~li~hlq~~n~~i~~  231 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQ-----------LVAEEVPIETLIRHLQVSNQRIQT  231 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHH-----------HHHhcCcHHHHHHHHHhcchHHHH
Confidence            1111122233333333211 1456777888888888887776666           677778889999999999999999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHH
Q 009184          400 EAAWAISNATSGGTHEQIKFLVI  422 (541)
Q Consensus       400 ~a~~aL~nl~~~~~~~~~~~l~~  422 (541)
                      .|...+..+...+....+..+.+
T Consensus       232 ~aial~nal~~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  232 CAIALLNALFRKAPDDKRFEMAK  254 (713)
T ss_pred             HHHHHHHHHHhhCChHHHHHHHH
Confidence            98888888877666555555443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.90  E-value=9.7  Score=41.10  Aligned_cols=195  Identities=18%  Similarity=0.134  Sum_probs=107.5

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIAG----  188 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----  188 (541)
                      .+..+.+++.+..  --..+|++.|..+..........     .+..+..++.+    .++.++..|+.+++.+..    
T Consensus       396 av~~i~~~I~~~~--~~~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK--LTDDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC--CCHHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            4666677777644  22233555555554432222222     24555666654    567888889988888862    


Q ss_pred             CC-----hhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC---Ch
Q 009184          189 DS-----PRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN---DD  257 (541)
Q Consensus       189 ~~-----~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~---d~  257 (541)
                      ..     ............++.+...+.   ...+..-+..++.+|.|+-.          ...++.+...+...   ..
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence            21     001111222335666666664   34566778888999999853          34678888887755   57


Q ss_pred             hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh
Q 009184          258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (541)
Q Consensus       258 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  335 (541)
                      .++..|+|+|..++...++.        +.+.+++++.+  .+.++|..|+.+|..  + .+..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~-~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMR--C-NPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH--T----H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh--c-CCCH-------HHHHHHHHH
Confidence            78999999999887666543        33566677644  457788888776643  2 2211       234456667


Q ss_pred             hcCCCchhHHH
Q 009184          336 LSGNYKKSIKK  346 (541)
Q Consensus       336 L~~~~~~~v~~  346 (541)
                      +....+..|..
T Consensus       601 l~~E~~~QV~s  611 (618)
T PF01347_consen  601 LWNEPSNQVAS  611 (618)
T ss_dssp             HTT-S-HHHHH
T ss_pred             HhhCchHHHHH
Confidence            76654455543

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=91.85  E-value=5.4  Score=35.04  Aligned_cols=141  Identities=18%  Similarity=0.144  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHhcC-Ch----hHHHHHHh------CCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 009184          133 LQFEAAWALTNIASG-TS----EHTKVVID------HGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (541)
Q Consensus       133 i~~~a~~~L~~l~~~-~~----~~~~~i~~------~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~  200 (541)
                      +|..|+.+|..++.. .+    .+...++.      .+.-+.|+ -++.++++.+|..|+.++..+-.+...+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            566777777777764 11    11122221      12334444 45677899999999999998875543221111110


Q ss_pred             C-------------------ChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC--hhhhhchHHHHHHhhccCChhH
Q 009184          201 G-------------------GLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP--FDQVSPALPALAHLIHSNDDEV  259 (541)
Q Consensus       201 g-------------------~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~l~~L~~lL~~~d~~v  259 (541)
                      .                   .-..|+..|....+..+....+.++..|....|...  ......++..+..++.+.|.++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence            0                   123445555566788889999999999999875443  3445666777778888899999


Q ss_pred             HHHHHHHHHHhccC
Q 009184          260 LTDACWALSYLSDG  273 (541)
Q Consensus       260 ~~~a~~~L~~l~~~  273 (541)
                      +..++.+++.+...
T Consensus       162 ~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  162 RVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999888877643

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.74  E-value=1.8  Score=37.57  Aligned_cols=111  Identities=18%  Similarity=0.185  Sum_probs=77.9

Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhc---CC
Q 009184          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITA---GN  359 (541)
Q Consensus       285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~  359 (541)
                      ....++..+|.++++.-+..++..++.++..++..  .+.+  ...+..++..|+.++.+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e--~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWE--ILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            56778889999999999999999999988766422  2222  34788899999987677889999999999886   44


Q ss_pred             hHHHHHHHhhchhhHHHHHhc---CcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          360 REQIQVIMHVHAFSIIAVIEA---NIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       360 ~~~~~~~~~~~~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      ++..+           .+...   ++++.++.+++.  ......++.+|..+..
T Consensus       103 p~l~R-----------ei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  103 PTLTR-----------EIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             CchHH-----------HHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence            44343           33321   345555555543  4666777777777765

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.50  E-value=1.7  Score=38.50  Aligned_cols=83  Identities=11%  Similarity=0.209  Sum_probs=63.0

Q ss_pred             CChhHHHHHHhCCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhh
Q 009184          147 GTSEHTKVVIDHGAVPIFVKLLYS---------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS  217 (541)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~lL~~---------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~  217 (541)
                      .+..+.+.+++.|++..|+.+|..         .+..+...++.||..|..........+-..+.+..|...| .+++..
T Consensus        95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~  173 (187)
T PF06371_consen   95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIK  173 (187)
T ss_dssp             S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHH
T ss_pred             CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHH
Confidence            345677888888899999988842         4567888899999998877665555555667888888888 788899


Q ss_pred             HHHHHHHHHHhhh
Q 009184          218 MLRNATWTLSNFC  230 (541)
Q Consensus       218 ~~~~a~~~L~~l~  230 (541)
                      ++..++.+|..+|
T Consensus       174 ~r~~~leiL~~lc  186 (187)
T PF06371_consen  174 TRKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=91.50  E-value=13  Score=35.29  Aligned_cols=203  Identities=11%  Similarity=0.093  Sum_probs=137.9

Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC-C--Chhhh---hchHHHHHHhhccC-ChhHHHHHHHHH
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-P--PFDQV---SPALPALAHLIHSN-DDEVLTDACWAL  267 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~--~~~~~---~~~l~~L~~lL~~~-d~~v~~~a~~~L  267 (541)
                      ..+...|.+..++..+ ..-+-+.+..++.+..++-+..-. .  .....   ..++..++.-  .. .+++...+-..+
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHH
Confidence            3455677888888888 666777888888888888876521 1  12222   2333444333  12 244444444444


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCc----hHHHHHhhcCCCchh
Q 009184          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA----LPCLLNLLSGNYKKS  343 (541)
Q Consensus       268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~----l~~L~~lL~~~~~~~  343 (541)
                      ..... .+.....+..+.-+......+..+.-++..-|..+...+.+........++....    .++.-.++.+. +.-
T Consensus       150 rEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyv  227 (342)
T KOG1566|consen  150 RECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYV  227 (342)
T ss_pred             HHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-cee
Confidence            44333 3334566777778888888888888889999999999888877666555554332    44466778887 899


Q ss_pred             HHHHHHHHHHHHhcCC--hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184          344 IKKEACWTVSNITAGN--REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  412 (541)
Q Consensus       344 v~~~a~~~L~nl~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  412 (541)
                      ++..+...++.+..+.  .....          .++-...-+..+..+|..+...++-+|-....-++...
T Consensus       228 tkrqs~kllg~llldr~N~~~M~----------kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAVMT----------KYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHHHH----------HHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            9999999999988642  22222          04445577888999999999999999998888877654

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.50  E-value=36  Score=40.43  Aligned_cols=130  Identities=15%  Similarity=0.126  Sum_probs=79.5

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChh
Q 009184          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFD  239 (541)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~  239 (541)
                      +..++..+..+++..+-.+..+++.++..-+.. ..  -.+..+.+++.+....++-.+.-...++..+-+.. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            445555666788888888888888887433211 11  11235566677755566666655566666666665 444455


Q ss_pred             hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009184          240 QVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (541)
Q Consensus       240 ~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL  294 (541)
                      .....+..+..+.+.+ ++.|+..++.++..+.+.........++ ..+..+..+|
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lL 1009 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLL 1009 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHc
Confidence            5566777777777654 5689999999999988654433332232 2334444444

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=91.32  E-value=0.97  Score=40.12  Aligned_cols=108  Identities=16%  Similarity=0.070  Sum_probs=72.0

Q ss_pred             CCCHHHHHHHHHHHHHhhCCChhhHHHHH---------------hcCChHHHHHhhcC-----CChhhHHHHHHHHHHhh
Q 009184          170 SPSDDVREQAVWALGNIAGDSPRCRDLVL---------------SQGGLVPLLAQLNG-----QPKLSMLRNATWTLSNF  229 (541)
Q Consensus       170 ~~~~~v~~~a~~~L~nl~~~~~~~r~~i~---------------~~g~i~~Ll~~l~~-----~~~~~~~~~a~~~L~~l  229 (541)
                      .+.......++..|+|++.....++..+-               +...+..|+..+.+     .....-....+.++.|+
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            34455677788889999876664443321               12246667776644     22355678889999999


Q ss_pred             hcCCCCCChhhh--hc--hHHHHHHhhccCChhHHHHHHHHHHHhccCChHH
Q 009184          230 CRGKPQPPFDQV--SP--ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK  277 (541)
Q Consensus       230 ~~~~~~~~~~~~--~~--~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~  277 (541)
                      ++....+.+...  ..  .+..|+.++.+.+..-+.-++.+|.|+|-..+..
T Consensus        86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H  137 (192)
T PF04063_consen   86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH  137 (192)
T ss_pred             cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence            988644443332  22  3777888888887777888899999998655543

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=91.31  E-value=2.5  Score=37.57  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=74.1

Q ss_pred             hCCCChhhHHHHHHHHhHhhcCCchhHHHHH----------------hcCchHHHHHhhcCCC-----chhHHHHHHHHH
Q 009184          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVI----------------EYQALPCLLNLLSGNY-----KKSIKKEACWTV  352 (541)
Q Consensus       294 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~----------------~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L  352 (541)
                      +.+++......++..|+|++...... ..++                ....+..|+.++..+.     ...-....+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            34455567778888889988744322 2222                2235677777776611     234456778899


Q ss_pred             HHHhcCChHHHHHHHhhchhhHHHHHhc--Cc--HHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 009184          353 SNITAGNREQIQVIMHVHAFSIIAVIEA--NI--IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI  422 (541)
Q Consensus       353 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~--~~--l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~  422 (541)
                      +|++.. ++..+           .+++.  +.  +..|+..+++.+..-|.-++.+|.|++-.  .+.-.+|..
T Consensus        83 ~NlS~~-~~gR~-----------~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~  142 (192)
T PF04063_consen   83 ANLSQL-PEGRQ-----------FFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS  142 (192)
T ss_pred             HHhcCC-HHHHH-----------HHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence            999874 66666           66643  34  77888888888666677799999999884  333345443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=91.27  E-value=1.7  Score=37.40  Aligned_cols=146  Identities=13%  Similarity=0.118  Sum_probs=79.3

Q ss_pred             CcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHH
Q 009184          285 GVFPRLAEFLMHP-SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (541)
Q Consensus       285 g~l~~L~~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (541)
                      .+++.|..+|+.+ ++.+|.+++++||.|.+-++...+.+...  .+.-.  -... ........... .+......   
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~-~~~~~~~~l~~-~~~~~~~e---   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENS-NDESTDISLPM-MGISPSSE---   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccc-cccchhhHHhh-ccCCCchH---
Confidence            5677888888664 68999999999999998777554322211  00000  0000 11111111111 11111111   


Q ss_pred             HHHHhhchhhHHHHHhcCcHHHHHHHhhcCc-hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHH
Q 009184          364 QVIMHVHAFSIIAVIEANIIGPLVALLENAE-FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVT  442 (541)
Q Consensus       364 ~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~  442 (541)
                                  ...-.-++..|+++|.++. ..-...++.++.++...-......++-  .+++.++..+...++..++
T Consensus        81 ------------e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e  146 (160)
T PF11865_consen   81 ------------EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLRE  146 (160)
T ss_pred             ------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHH
Confidence                        2222246677888777653 233345666666665322222233332  3788888888876667787


Q ss_pred             HHHHHHHHHHH
Q 009184          443 VCLEGLENILK  453 (541)
Q Consensus       443 ~~l~~L~~l~~  453 (541)
                      ..+.-|..|+.
T Consensus       147 ~~~~qL~~lv~  157 (160)
T PF11865_consen  147 FYFQQLADLVS  157 (160)
T ss_pred             HHHHHHHHHHH
Confidence            77777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=91.24  E-value=27  Score=42.13  Aligned_cols=263  Identities=13%  Similarity=0.069  Sum_probs=140.8

Q ss_pred             CCHHHHHHHHHHHHHHHccC--CCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChH
Q 009184           85 NDSGVQYECTTQFRKLLSIE--RSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP  162 (541)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~--~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  162 (541)
                      .+..+...|+..|++++...  ..+....-.+..++..|..++.+..+.+++...+.|+.++.....+    -+..| =+
T Consensus      1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-Wk 1223 (1780)
T PLN03076       1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-WK 1223 (1780)
T ss_pred             cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-cH
Confidence            45678888999888876532  1111112234557888888887666689999999999998763222    22233 33


Q ss_pred             HHHHhh----CCCCHHHHHHHHHHHHHhhCCChh-h----HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh----
Q 009184          163 IFVKLL----YSPSDDVREQAVWALGNIAGDSPR-C----RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF----  229 (541)
Q Consensus       163 ~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~-~----r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l----  229 (541)
                      .+..++    ..+++.+.+.|..++..|+.+.-. .    .+.+.+  .+..+........+.++--.++..|+++    
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence            344444    346788899999988888644211 0    011111  3444444443333344444444444433    


Q ss_pred             hcCCC-----------------------C------CCh---hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC----
Q 009184          230 CRGKP-----------------------Q------PPF---DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG----  273 (541)
Q Consensus       230 ~~~~~-----------------------~------~~~---~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~----  273 (541)
                      +.+..                       .      ...   ...-.++..|..+......+|+..|+.+|..+...    
T Consensus      1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence            11100                       0      000   11122333344445567889999999999777532    


Q ss_pred             -ChHHHHHHHHhCcHHHHHHhhCCC-------------------C-----h--hhHHHHHHHHhHhhcCCchhHHHHHhc
Q 009184          274 -TNDKIQAVIEAGVFPRLAEFLMHP-------------------S-----P--SVLIPALRTVGNIVTGDDMQTQCVIEY  326 (541)
Q Consensus       274 -~~~~~~~~~~~g~l~~L~~lL~~~-------------------~-----~--~v~~~al~~L~nl~~~~~~~~~~~~~~  326 (541)
                       +++.-..+.. +++-.+...++..                   +     |  .....|++.+..+....-.....++ .
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~ 1459 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-K 1459 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence             2223333333 4555554444210                   0     1  1223344444444332222222222 3


Q ss_pred             CchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          327 QALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       327 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      +++..|..++... +..+-..++.+|.++..
T Consensus      1460 ~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1460 KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            5566666666777 78888888888888876

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.16  E-value=21  Score=37.00  Aligned_cols=104  Identities=25%  Similarity=0.333  Sum_probs=76.8

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC--hhH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEH  151 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~--~~~  151 (541)
                      .+.-++.++.++|..+++.+++.|+.+...  ...+++.+-.|++..|.+-+-+.. +.++.+|+.+|+.+-..+  +++
T Consensus        92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          92 TFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChHH
Confidence            455667777889999999999999988643  667888888888888887776666 899999999999886533  333


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 009184          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS  190 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~  190 (541)
                      +       ....|..+++. |+.++|..|   +.||..+.
T Consensus       169 ~-------~~n~l~~~vqnDPS~EVRr~a---llni~vdn  198 (885)
T COG5218         169 R-------IVNLLKDIVQNDPSDEVRRLA---LLNISVDN  198 (885)
T ss_pred             H-------HHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence            2       23456666665 788898865   55665444

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=90.97  E-value=1  Score=34.64  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      .+...++.|.++.+.+|-.|+..|++++... ....  .--.+++..+...|++++ +-+-..|+.+|..++...++
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~~~~--~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-SEPV--IDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-Ccch--hhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence            4677888889999999999999999999764 3111  112567888899999998 89999999999999986554

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=89.96  E-value=22  Score=35.46  Aligned_cols=267  Identities=13%  Similarity=0.066  Sum_probs=134.6

Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHhc---CChHHHHHhhc-CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHH
Q 009184          172 SDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLN-GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA  247 (541)
Q Consensus       172 ~~~v~~~a~~~L~nl~~~~~~~r~~i~~~---g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~  247 (541)
                      +..+..+|+.+|+.+..+.. ....+-..   -++...+..+. ...+..+....+|+|+.=-.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            67899999999999875543 22222111   12344444442 344567778888887753222111122222333333


Q ss_pred             HHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCCCChhhHHHHHHHHhHhhc--CCc-hhH--
Q 009184          248 LAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVT--GDD-MQT--  320 (541)
Q Consensus       248 L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~--~~~-~~~--  320 (541)
                      +..+-. -+...+....+.++..+....+...  .... ..++.++..+-+....++..|..++..+..  +.. ...  
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M--~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQM--IKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            333332 3566788889999988887665432  2222 367777777767666777776655544432  111 111  


Q ss_pred             -HHHHh----cC-----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184          321 -QCVIE----YQ-----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL  390 (541)
Q Consensus       321 -~~~~~----~~-----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l  390 (541)
                       ....+    .+     +.+.|..++... +.....--+|...-..-+++. ..   .|      .. -...+...-..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~-~~---~w------~~-~n~wL~v~e~cF  283 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSR-LD---SW------EH-LNEWLKVPEKCF  283 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCch-hh---cc------Hh-HhHHHHHHHHHh
Confidence             11111    12     233356666663 222222223333222222221 11   00      11 113444444556


Q ss_pred             hcCchhHHHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHhhhcCCC-Ch----HHHHHHHHHHHHHHHh
Q 009184          391 ENAEFDIKKEAAWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCP-DP----RIVTVCLEGLENILKV  454 (541)
Q Consensus       391 ~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~-~~----~~~~~~l~~L~~l~~~  454 (541)
                      .++++.+|..|..+-..++...  +.........- +..+|...++.. ..    ++...++..+.+++-+
T Consensus       284 n~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  284 NSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            7789999999988887776422  11111111111 234555555442 22    5677777777777743

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=89.95  E-value=23  Score=35.66  Aligned_cols=193  Identities=19%  Similarity=0.247  Sum_probs=119.7

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCChHHHHHhhc------CCChhhHHHHHHHHHHhhhcC
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGLVPLLAQLN------GQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~r~~i~~~g~i~~Ll~~l~------~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..+..++...+.+-+-.++.....++..+.   ..+..+.+.-+++-+-+++.      .+++.-.+..++.+|.-+|+.
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            335566666777777788888888875442   24445666545555555552      233445567778888899998


Q ss_pred             CCCCChhhhhchHHHHHHhhccC-Chh------HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChh-hHHH
Q 009184          233 KPQPPFDQVSPALPALAHLIHSN-DDE------VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS-VLIP  304 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~-d~~------v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~-v~~~  304 (541)
                      ........+-.-+|.|...+... |++      +..++..+|..++..... .+.++..|.++.+.++-.-++.. -..-
T Consensus        94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            76555556677889998888643 333      688888999888877554 45688889999998775433322 2223


Q ss_pred             HHHHHhHhhcCCc---hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009184          305 ALRTVGNIVTGDD---MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (541)
Q Consensus       305 al~~L~nl~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  358 (541)
                      ++.++--.+.+.+   +....+..  ++..+..-+... +...+.+.|..|+.+...
T Consensus       173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~-~~a~KfElc~lL~~vl~~  226 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVL-HNALKFELCHLLSAVLSS  226 (698)
T ss_pred             HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHh-hhHHHHHHHHHHHHHHhC
Confidence            3333333333221   11112211  244444445555 677889999999977663

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.78  E-value=32  Score=37.02  Aligned_cols=315  Identities=14%  Similarity=0.121  Sum_probs=167.8

Q ss_pred             CHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHH--hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           74 NLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        74 ~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      ....+++.++.. |.-++..+++.++-++.+- +-..+.+.  -..+...+.+++..-..-+.+...+..|+.+.....+
T Consensus       527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~-nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e  605 (978)
T KOG1993|consen  527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDW-NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE  605 (978)
T ss_pred             HHHHHHHhcCccccceeehHHHHHHHHhhhhc-cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            345666777764 6778889999998877543 22222221  1334445555555432235566666666666553333


Q ss_pred             HHHHHHhCCChHHHHHhh------CCCCHHHHHHHHHHHHHhhC---C-ChhhHHHHHhcCChHHHHHhhcCC---Chhh
Q 009184          151 HTKVVIDHGAVPIFVKLL------YSPSDDVREQAVWALGNIAG---D-SPRCRDLVLSQGGLVPLLAQLNGQ---PKLS  217 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL------~~~~~~v~~~a~~~L~nl~~---~-~~~~r~~i~~~g~i~~Ll~~l~~~---~~~~  217 (541)
                      ....     ....+++++      ..+.+-++.+.+.+|.|+..   . +..+..      ++-+++.+-.+.   +..-
T Consensus       606 ~I~P-----~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~  674 (978)
T KOG1993|consen  606 HIAP-----YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVY  674 (978)
T ss_pred             hhhH-----HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceee
Confidence            3211     112222222      22556778888888888862   2 221111      223333333222   2233


Q ss_pred             HHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHH-HHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009184          218 MLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (541)
Q Consensus       218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L-~~l~~~~~~~~~~~~~~g~l~~L~~lL~~  296 (541)
                      +.+.+.........+.+... ...-+++|.++..+....+ ....++..+ +++.-.+....+ ....|++..+..++.+
T Consensus       675 L~EDgmeLW~~~L~n~~~l~-p~ll~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~d  751 (978)
T KOG1993|consen  675 LLEDGMELWLTTLMNSQKLT-PELLLLFPHLLYIIEQSTE-NLPTVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDD  751 (978)
T ss_pred             hhhhHHHHHHHHHhcccccC-HHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHH
Confidence            44555544444444433222 2345677888777764433 334444444 333333333222 3344888899999877


Q ss_pred             CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHH
Q 009184          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII  375 (541)
Q Consensus       297 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~  375 (541)
                      -..+-....++++..+...++ ........++++.+..-+- ....|.+...-..+++.+.-.+++..-           
T Consensus       752 vr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~m-----------  819 (978)
T KOG1993|consen  752 VRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFM-----------  819 (978)
T ss_pred             hhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHH-----------
Confidence            666667777888877776554 3334456778888766553 332567777777777777776666554           


Q ss_pred             HHHh-cC--------cHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHH
Q 009184          376 AVIE-AN--------IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHE  415 (541)
Q Consensus       376 ~l~~-~~--------~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~  415 (541)
                      .+++ ..        ++..-+.+... .+++-|+--+-|+..+...+++.
T Consensus       820 svlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~  869 (978)
T KOG1993|consen  820 SVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD  869 (978)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence            3331 11        12222222222 35666666666666666654443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=89.70  E-value=18  Score=33.99  Aligned_cols=214  Identities=18%  Similarity=0.132  Sum_probs=120.0

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHccCC--CCc-HHHHH-----------hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHH
Q 009184           79 VAGVWSNDSGVQYECTTQFRKLLSIER--SPP-IEEVI-----------RSGVVPRFVEFLLREDYPQLQFEAAWALTNI  144 (541)
Q Consensus        79 ~~~L~s~~~~~~~~a~~~l~~l~~~~~--~~~-~~~~i-----------~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l  144 (541)
                      +.+|.+..+..-..|+..+.++++.-+  .+. .+.+.           -.|+.+.+++-+.++.   ....++..|..+
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~---t~e~tl~lL~~L   89 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS---TYELTLRLLSRL   89 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC---cHHHHHHHHHHH
Confidence            456777777777778888877776421  111 11111           0233333334444433   445555666665


Q ss_pred             hcC-------ChhHHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC
Q 009184          145 ASG-------TSEHTKVVIDHGAVPIFVKLLYSPS----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ  213 (541)
Q Consensus       145 ~~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~  213 (541)
                      +.-       ..+.+-.+.-.+.+|.++..+..++    ......++..|+.+|....        ...+..++....+.
T Consensus        90 ~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~  161 (262)
T PF14225_consen   90 TPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKG  161 (262)
T ss_pred             hcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhc
Confidence            542       1222322222356788888887766    1344456688888873322        12344444444332


Q ss_pred             C---hhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009184          214 P---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (541)
Q Consensus       214 ~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L  290 (541)
                      .   ..+....++..|..-..  |    ......+..+..+|.+.-+.++..++..|..+....+-...  ...+++..+
T Consensus       162 ~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  162 RFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence            2   33444444444443221  2    12355677888999888889999999999888765443222  445788899


Q ss_pred             HHhhCCCChhhHHHHHHHHhHhhc
Q 009184          291 AEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       291 ~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                      .+++.++.   ...|+.+|-++.+
T Consensus       234 lrlL~t~~---~~eAL~VLd~~v~  254 (262)
T PF14225_consen  234 LRLLQTDL---WMEALEVLDEIVT  254 (262)
T ss_pred             HHHhCCcc---HHHHHHHHHHHHh
Confidence            99997766   4456666555543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.26  E-value=6  Score=37.45  Aligned_cols=146  Identities=19%  Similarity=0.184  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--C
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHG--AVPIFVKLLY----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQG--G  202 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~L~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~  202 (541)
                      ++.+.-++..+.-++. .+.....+...+  ....+..++.    +..+..+-.++++++|+..... .+..+....  .
T Consensus        77 ~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~  154 (268)
T PF08324_consen   77 PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSS  154 (268)
T ss_dssp             CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTC
T ss_pred             CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccch
Confidence            3556666666655555 444444443322  2333333332    2567888899999999987766 566665442  2


Q ss_pred             hHHHHHhhcCCC---hhhHHHHHHHHHHhhhcCC--CCCChhhhhchHHHHHHhhc--cCChhHHHHHHHHHHHhccCCh
Q 009184          203 LVPLLAQLNGQP---KLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLIH--SNDDEVLTDACWALSYLSDGTN  275 (541)
Q Consensus       203 i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l~~~~~  275 (541)
                      +...+..+....   +..++..++.++.|++-..  ..........++..+...+.  ..|+++...++-+++++...++
T Consensus       155 i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~  234 (268)
T PF08324_consen  155 ILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD  234 (268)
T ss_dssp             HHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence            333333332332   7888889999999987543  11122233445666666433  2689999999999999996665


Q ss_pred             HHH
Q 009184          276 DKI  278 (541)
Q Consensus       276 ~~~  278 (541)
                      ...
T Consensus       235 ~~~  237 (268)
T PF08324_consen  235 SAK  237 (268)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.91  E-value=28  Score=35.22  Aligned_cols=135  Identities=13%  Similarity=0.103  Sum_probs=80.8

Q ss_pred             HHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCCh
Q 009184          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSP  299 (541)
Q Consensus       221 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~  299 (541)
                      .-...++.+...............+..+..-..+++..++..|+++|.+.+...++....... -.+..++.-| +..+.
T Consensus       236 td~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~  314 (533)
T KOG2032|consen  236 TDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNE  314 (533)
T ss_pred             HHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCcc
Confidence            333444445444322222233444444444455677789999999999999885554332222 3445555444 44568


Q ss_pred             hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       300 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      +|...++.+|..+...-....-...--.+.-.+..+..+. +++.|..|...++.++.
T Consensus       315 ~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  315 EVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAK  371 (533)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHH
Confidence            8999999888877642211100000112344566777777 89999999999888876

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=88.84  E-value=2.2  Score=32.73  Aligned_cols=77  Identities=9%  Similarity=0.095  Sum_probs=57.7

Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  408 (541)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  408 (541)
                      +...+..+.++ .+.+|..+...|..+.....  ..           ..--.+++..+...++++|+-|--.|+.+|+.+
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~-----------~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~L   70 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EP-----------VIDIPKILDLFLSQLKDEDSYVYLNAIKGLAAL   70 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cc-----------hhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence            45566777777 78899999999999998544  11           122346788888999999999999999999999


Q ss_pred             ccCCCHHHHHH
Q 009184          409 TSGGTHEQIKF  419 (541)
Q Consensus       409 ~~~~~~~~~~~  419 (541)
                      +..........
T Consensus        71 a~~~p~~vl~~   81 (92)
T PF10363_consen   71 ADRHPDEVLPI   81 (92)
T ss_pred             HHHChHHHHHH
Confidence            87543333333

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=88.84  E-value=27  Score=34.81  Aligned_cols=157  Identities=11%  Similarity=0.053  Sum_probs=87.0

Q ss_pred             HHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhc----CC-CchhHHHHHHHHHHH
Q 009184          281 VIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS----GN-YKKSIKKEACWTVSN  354 (541)
Q Consensus       281 ~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~-~~~~v~~~a~~~L~n  354 (541)
                      +.+..-.+.+-.-+.. +...-+..|+..+..++.........++    ...+..++.    ++ .+..-+..|+..++.
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            3444444555445543 3355678888888888865444333332    123333333    22 266788899999999


Q ss_pred             HhcCChHHHHHHHh-hchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184          355 ITAGNREQIQVIMH-VHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  433 (541)
Q Consensus       355 l~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL  433 (541)
                      ++........-+.+ +..++...+....++|.|. --.+..+-++..|++.+..+-..-++++..     ++++.++.+|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~-----~~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL-----QIFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH-----HHHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHh
Confidence            98743210000000 1122233677777888776 222346788999999999987765554433     3788999999


Q ss_pred             CCCChHHHHHHHHH
Q 009184          434 VCPDPRIVTVCLEG  447 (541)
Q Consensus       434 ~~~~~~~~~~~l~~  447 (541)
                      .+++.-+..-|..+
T Consensus       356 ~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  356 QSSSYVVHTYAAIA  369 (370)
T ss_dssp             TSS-HHHHHHHHHH
T ss_pred             CCCCcchhhhhhhh
Confidence            98876665554433

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=88.01  E-value=35  Score=35.13  Aligned_cols=155  Identities=14%  Similarity=0.121  Sum_probs=107.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC---hhhHHHHHHHHHHhhhcCCCCCCh
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPF  238 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~  238 (541)
                      ..+...+.+++..-+..++..|..++.+.. +...++...++..|..++.+..   ...+....+.+++.+....-....
T Consensus        86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   86 KRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            455667777776666668888888877766 5555566667888888885433   456777777788777766431111


Q ss_pred             hhhhchHHHHHHhh--ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184          239 DQVSPALPALAHLI--HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (541)
Q Consensus       239 ~~~~~~l~~L~~lL--~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  316 (541)
                      .....++-....+.  ...+..+...|+..|-.+.-+++...+.+.+.--+..|+..++..+..+...|+..+..+....
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a  244 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA  244 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence            12223333333333  2335667888888888888777777777788788999999999999889888888887776655


Q ss_pred             c
Q 009184          317 D  317 (541)
Q Consensus       317 ~  317 (541)
                      +
T Consensus       245 ~  245 (713)
T KOG2999|consen  245 P  245 (713)
T ss_pred             C
Confidence            4

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=87.62  E-value=24  Score=38.86  Aligned_cols=129  Identities=16%  Similarity=0.148  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh
Q 009184          173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI  252 (541)
Q Consensus       173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL  252 (541)
                      +.++.++..+|+++|-.....     ....+|.+++-|..++...++.+..-+++-+|...    .......+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            678889999999999544432     22258899999988888888888888888887653    124467789999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184          253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       253 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                      ..+++-|+..++..|++|....--.    ....++-+++..|-+.+++++.-|=.+++.+..
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence            9999999999999999987543211    111233344444455666777777777766653

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=87.33  E-value=37  Score=34.67  Aligned_cols=260  Identities=11%  Similarity=0.097  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHH
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVP  205 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~i~~  205 (541)
                      +-+.....+++.-+-.+-......+++. ++..+....++ .++..-.....+++.+.+    ..+.... -++...+++
T Consensus        44 eylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~-~~E~~L~P~  121 (435)
T PF03378_consen   44 EYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVS-QFEEALFPP  121 (435)
T ss_dssp             HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHH-HHHHHHHHH
Confidence            4455545555444444333333333321 23333333444 455555555555555542    2221111 234446777


Q ss_pred             HHHhhcCCChhhHHHHHHHHHHhhhcCCC-CCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 009184          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  283 (541)
Q Consensus       206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~  283 (541)
                      +..+| ...-.+..-.+...++.|.+..+ .........++|.|+.- +-.....+ -...+.|.......+..   +..
T Consensus       122 f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~---i~~  196 (435)
T PF03378_consen  122 FQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSF---IVA  196 (435)
T ss_dssp             HHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG------
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchh---hcc
Confidence            77777 44445666666677776665544 22223445555554432 21111111 22222333222221111   111


Q ss_pred             h----CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchh-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-
Q 009184          284 A----GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-  357 (541)
Q Consensus       284 ~----g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-  357 (541)
                      .    +++..+-+++.+..  .-..+...|..+...-+.. .+..+ ..++..++.-|++....+..+.-+..++.++. 
T Consensus       197 ~~~l~~iLgvFQkLi~sk~--~D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~  273 (435)
T PF03378_consen  197 NNQLEPILGVFQKLIASKA--NDHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIK  273 (435)
T ss_dssp             -S-CHHHHHHHHHHHT-TT--CHHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCCC--cchHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence            1    33444445665543  2245667777776655432 11222 23555666666655356666666666666654 


Q ss_pred             CChHHHHHHHhhchhhHHHHH---hcCcHHHHHHHh-----hc-CchhHHHHHHHHHHHhccC
Q 009184          358 GNREQIQVIMHVHAFSIIAVI---EANIIGPLVALL-----EN-AEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~l~---~~~~l~~L~~~l-----~~-~~~~v~~~a~~aL~nl~~~  411 (541)
                      .+++..-           ..+   +.|++..++.-+     .. ..+.-|+-++-+++++...
T Consensus       274 ~g~~~li-----------~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  274 YGPDFLI-----------QTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             H-HHHHH-----------HHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHH-----------HHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            3343332           222   345555555421     11 1234466677777776643

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=87.29  E-value=41  Score=35.23  Aligned_cols=58  Identities=16%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~  146 (541)
                      +.++.+....+..+...+.   .-|.+.+...+++..+..-+.+.  |+.+..++.||+.++.
T Consensus       204 ~~~~SLi~ATLesllrfl~---wiPl~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi~~  261 (1053)
T COG5101         204 SRDESLIEATLESLLRFLE---WIPLDYIFETNIIELVLEHFNSM--PDTRVATLSCLTEIVD  261 (1053)
T ss_pred             cCChHHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHh
Confidence            5677777777777777663   56678888888888887766553  5777888888888876

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=87.26  E-value=16  Score=39.66  Aligned_cols=322  Identities=16%  Similarity=0.114  Sum_probs=158.3

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHH------hC
Q 009184           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI------DH  158 (541)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~------~~  158 (541)
                      +|..+...+++.|+.++..  +.....++..|++..|+..   +.....-.-...||..|.+ .......+.      -.
T Consensus       365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~v---pr~s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAV---PRVSETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcC---CCchhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence            3444566778888877754  5566677777777666554   3312333444456666665 222222221      12


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC-------C-----------ChhhHHH
Q 009184          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-------Q-----------PKLSMLR  220 (541)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~-------~-----------~~~~~~~  220 (541)
                      .++..-+.+|......-+.++...++-...... .-+.+-.+..+..|+.++..       +           .+..+..
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~fra-il~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~  517 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAAFVFRA-ILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF  517 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence            334445556655443333333333222111000 11222234456666666521       1           1223344


Q ss_pred             HHHHHHHhhhcCCC-----C-CChhhhhchHHHHHHhhccC------ChhHHHHHHHHHHHhccCCh-------HHHHHH
Q 009184          221 NATWTLSNFCRGKP-----Q-PPFDQVSPALPALAHLIHSN------DDEVLTDACWALSYLSDGTN-------DKIQAV  281 (541)
Q Consensus       221 ~a~~~L~~l~~~~~-----~-~~~~~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~-------~~~~~~  281 (541)
                      ..|.+|....+..-     . .......+..+..++-+...      ..+..+..+|-+-.+....+       .....+
T Consensus       518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf  597 (1516)
T KOG1832|consen  518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF  597 (1516)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence            45555543332210     0 00011112222222222211      12334555555544433322       122346


Q ss_pred             HHhCcHHHHHHhhCCC-C-------hhhHHHHHHHHhHhhcCCchhHHHHH----h---cCchHHHHHhhcCC---Cchh
Q 009184          282 IEAGVFPRLAEFLMHP-S-------PSVLIPALRTVGNIVTGDDMQTQCVI----E---YQALPCLLNLLSGN---YKKS  343 (541)
Q Consensus       282 ~~~g~l~~L~~lL~~~-~-------~~v~~~al~~L~nl~~~~~~~~~~~~----~---~~~l~~L~~lL~~~---~~~~  343 (541)
                      .+.+.+..++.+...+ +       .+....|+.+|.-+..-.+-+.+..-    .   ..++..++..-...   .+++
T Consensus       598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpe  677 (1516)
T KOG1832|consen  598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPE  677 (1516)
T ss_pred             HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHH
Confidence            6677778887776442 2       24566777777766655554432211    1   11333333332211   1789


Q ss_pred             HHHHHHHHHHHHhcCChHH----HHHHHhhch----h----------------hHHHHHhcCcHHHHHHHhhcCc-----
Q 009184          344 IKKEACWTVSNITAGNREQ----IQVIMHVHA----F----------------SIIAVIEANIIGPLVALLENAE-----  394 (541)
Q Consensus       344 v~~~a~~~L~nl~~~~~~~----~~~~~~~~~----~----------------~~~~l~~~~~l~~L~~~l~~~~-----  394 (541)
                      ++..|+.+|.|+....+..    +..+-..+.    |                .|-.+-..+.+..|+.+|+...     
T Consensus       678 i~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~a  757 (1516)
T KOG1832|consen  678 IIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTA  757 (1516)
T ss_pred             HHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcH
Confidence            9999999999998754332    211111110    0                2223345688999999998743     


Q ss_pred             hhHHHHHHHHHHHhccCCC
Q 009184          395 FDIKKEAAWAISNATSGGT  413 (541)
Q Consensus       395 ~~v~~~a~~aL~nl~~~~~  413 (541)
                      ..+|.-|+.+|.-|+...+
T Consensus       758 D~IRalAc~~L~GLaR~~t  776 (1516)
T KOG1832|consen  758 DCIRALACRVLLGLARDDT  776 (1516)
T ss_pred             HHHHHHHHHHHhccccCcH
Confidence            4689999999999988543

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=87.05  E-value=29  Score=35.39  Aligned_cols=229  Identities=10%  Similarity=0.030  Sum_probs=112.0

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC----CCCChhhhhchHH
Q 009184          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK----PQPPFDQVSPALP  246 (541)
Q Consensus       171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~l~  246 (541)
                      +++.+-....+.+.-+-..-......++.. .+..+....++..++..-.....+++.+.+..    +.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            456666666666655544444444444443 33333333344556776666666666665543    2222345577889


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChh---hHHHHHHHHhHhhcCCchhHHHH
Q 009184          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS---VLIPALRTVGNIVTGDDMQTQCV  323 (541)
Q Consensus       247 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~---v~~~al~~L~nl~~~~~~~~~~~  323 (541)
                      .+...|+.+=.+...++...++.+.+....  ..+- .-....+-.++...-|+   -.-+..+.|..+....+...   
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~p-~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---  194 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPLP-DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---  194 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCc-HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence            999999888788889998888888754441  0011 11222222223222121   22445556666655443322   


Q ss_pred             HhcC----chHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh-HHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhH
Q 009184          324 IEYQ----ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR-EQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDI  397 (541)
Q Consensus       324 ~~~~----~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v  397 (541)
                      ...+    ++...-+++.+. .  .-..+...|..+...-+ +..+           ..+. .++..++.-|++. ..+.
T Consensus       195 ~~~~~l~~iLgvFQkLi~sk-~--~D~~gF~LL~~iv~~~p~~~l~-----------~yl~-~I~~lll~RLq~skT~kf  259 (435)
T PF03378_consen  195 VANNQLEPILGVFQKLIASK-A--NDHYGFDLLESIVENLPPEALE-----------PYLK-QIFTLLLTRLQSSKTEKF  259 (435)
T ss_dssp             ---S-CHHHHHHHHHHHT-T-T--CHHHHHHHHHHHHHHS-HHHHG-----------GGHH-HHHHHHHHHHHHC--HHH
T ss_pred             cchhhHHHHHHHHHHHHCCC-C--cchHHHHHHHHHHHHCCHHHHH-----------HHHH-HHHHHHHHHHhhCCcHHH
Confidence            2222    333444566655 2  22567778887776433 3333           2222 3555666666543 4556


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHH
Q 009184          398 KKEAAWAISNATSGGTHEQIKFLV  421 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~~~~~~~~l~  421 (541)
                      .+.-+..++.++....++.....+
T Consensus       260 ~~~fv~F~~~~~~~~g~~~li~~i  283 (435)
T PF03378_consen  260 VKRFVVFLSLFAIKYGPDFLIQTI  283 (435)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHH
Confidence            666555556554433344433333

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=87.05  E-value=7.4  Score=47.57  Aligned_cols=265  Identities=15%  Similarity=0.187  Sum_probs=139.8

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCC-----CcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC
Q 009184           84 SNDSGVQYECTTQFRKLLSIERS-----PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~-----~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~  158 (541)
                      ..+++.+..+...++.++.....     +..-.. -..++..+..+-....++.++......+.      ..........
T Consensus       492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~-v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~  564 (2341)
T KOG0891|consen  492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQV-VKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQP  564 (2341)
T ss_pred             cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHH-HHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcCc
Confidence            45677777776666655543211     000000 11123333333222222555554443333      1122223344


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhhcCCCC
Q 009184          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQ  235 (541)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~  235 (541)
                      +.+..+...+..+.-.+++.+...+++++..+|.+.-.-+..    ..+..+.   .+.-.-+......-+..+....+.
T Consensus       565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~----~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRK----TLLELLTELEFSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHH----HHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence            556666777777888899999999999998776322221111    1111111   111111111111111111111111


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhc
Q 009184          236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       236 ~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~  314 (541)
                      .....+...+..++..+...+..+...+..++..|+..........++ ..++.+.+.+.. .+..-+..++++++++.+
T Consensus       641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence            112233455566777777788888888889999988655533443444 556666666543 455678889999999987


Q ss_pred             CCchhHHHHHh-cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184          315 GDDMQTQCVIE-YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (541)
Q Consensus       315 ~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (541)
                      ........... ..++..+...+.......++.++...++++....+
T Consensus       720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~  766 (2341)
T KOG0891|consen  720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDP  766 (2341)
T ss_pred             ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccch
Confidence            65443322222 24566666666666567788888888887766433

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.16  E-value=9  Score=34.35  Aligned_cols=144  Identities=15%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-----CChhhHHHHHHHHhHhhcCCch-hHHHHHhcCchHHHH
Q 009184          260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDM-QTQCVIEYQALPCLL  333 (541)
Q Consensus       260 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~  333 (541)
                      ...++..|.-++..+. ....++++.+--.+..+|..     ..+.+|..++..+|.++.+.+. ....+....++|.++
T Consensus       117 vcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            3444545555555444 44556777665556666633     2356888999999999987664 445666789999999


Q ss_pred             HhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh-hchhhHHHHHhcCcHHHHHHH-hhcCchhHHHHHHHHHHHhcc
Q 009184          334 NLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH-VHAFSIIAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       334 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      +++..+ +.--+--|++++.-+... ....+|+-+ .+-|   +-+. .++..++.. .+.+..++-+.++.+-..++.
T Consensus       196 rIme~g-SElSktvaifI~qkil~d-DvGLqYiCqT~eRF---yAv~-~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd  268 (315)
T COG5209         196 RIMELG-SELSKTVAIFIFQKILGD-DVGLQYICQTFERF---YAVN-LVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD  268 (315)
T ss_pred             HHHHhh-hHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence            999998 776777777777777653 333432111 1111   1111 122223222 333566777777777777665

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=85.85  E-value=30  Score=32.16  Aligned_cols=132  Identities=14%  Similarity=0.108  Sum_probs=71.5

Q ss_pred             HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCCh
Q 009184          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNR  360 (541)
Q Consensus       282 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~  360 (541)
                      .+...++.++.+++.++.    ..-..+|-.++..-...-..+-.|-++.|..++.++. +.-+|..|+.+|..++...+
T Consensus        70 re~~A~~~li~l~~~~~~----~~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~  145 (249)
T PF06685_consen   70 REERALPPLIRLFSQDDD----FLEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP  145 (249)
T ss_pred             hhhhhHHHHHHHHcCCcc----hHHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            334678899999976653    2223333333322222222334566777888887764 56789999999999998666


Q ss_pred             HHHHHHHhhchhhHHHHHhcCcHHHHHHH-hhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHh
Q 009184          361 EQIQVIMHVHAFSIIAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLC  430 (541)
Q Consensus       361 ~~~~~~~~~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~  430 (541)
                      ....           .+++  .+..++.. +...+..+-..-+..++.+-...-...++.+.+.|+++..+
T Consensus       146 ~~Re-----------~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~~  203 (249)
T PF06685_consen  146 ISRE-----------EVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPSF  203 (249)
T ss_pred             CCHH-----------HHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCccc
Confidence            5555           3333  34444444 33333332333333333332221234455556677776533

The function of this family is unknown.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.60  E-value=2.4  Score=38.45  Aligned_cols=83  Identities=14%  Similarity=0.199  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHccCCCCcHHHHHhc-------CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH-HhCC
Q 009184           88 GVQYECTTQFRKLLSIERSPPIEEVIRS-------GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV-IDHG  159 (541)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~-------g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i-~~~g  159 (541)
                      .-|..|+.+++|+.-.+  .+++.++..       .++..|+++|....++-.++-|+-.|.+++.++......+ .+.+
T Consensus       139 SPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            45788999999987553  333333322       3566778888877668999999999999999876665444 4678


Q ss_pred             ChHHHHHhhCCCC
Q 009184          160 AVPIFVKLLYSPS  172 (541)
Q Consensus       160 ~i~~L~~lL~~~~  172 (541)
                      .|..|+.+++...
T Consensus       217 ~i~~Li~FiE~a~  229 (257)
T PF12031_consen  217 CISHLIAFIEDAE  229 (257)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999996643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=85.41  E-value=20  Score=38.90  Aligned_cols=157  Identities=18%  Similarity=0.199  Sum_probs=106.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .+..++..|.|.+......+-..+...+..++.+   +     ++..|+++--+..+    ..|+.+|..+-.  |..+.
T Consensus         5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~---~-----l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K~   70 (668)
T PF04388_consen    5 SITELLSLLESNDLSVLEEIKALLQELLNSDREP---W-----LVNGLVDYYLSTNS----QRALEILVGVQE--PHDKH   70 (668)
T ss_pred             cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH---H-----HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHHH
Confidence            6788999999999988888888888877654222   2     36667766443331    345556665432  32222


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                            ++..|-..+..  +.-|-.++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|..|.=.-
T Consensus        71 ------~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i  142 (668)
T PF04388_consen   71 ------LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI  142 (668)
T ss_pred             ------HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence                  23444455543  4567889999999998887777888888899999999988888888888888888776554


Q ss_pred             CCCChhhhhchHHHHHHhh
Q 009184          234 PQPPFDQVSPALPALAHLI  252 (541)
Q Consensus       234 ~~~~~~~~~~~l~~L~~lL  252 (541)
                      |..-......++.....++
T Consensus       143 p~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  143 PSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             cchhhHHHHHHHHHHHHHH
Confidence            4333333344444444444

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.35  E-value=4.4  Score=36.24  Aligned_cols=138  Identities=8%  Similarity=0.110  Sum_probs=87.2

Q ss_pred             hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC----CchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHH
Q 009184          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSII  375 (541)
Q Consensus       301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~  375 (541)
                      -...|+..|.-+++. ++....++++.+--.+...|...    ....+|..+..+++.+.. ++++.+.           
T Consensus       116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~-----------  183 (315)
T COG5209         116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIK-----------  183 (315)
T ss_pred             HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHH-----------
Confidence            345566666666654 44444566665544555555432    145688899999999998 6777777           


Q ss_pred             HHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc--------CChHHHhh-hcCCCChHHHHHHHH
Q 009184          376 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPLCD-LLVCPDPRIVTVCLE  446 (541)
Q Consensus       376 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~~L~~-lL~~~~~~~~~~~l~  446 (541)
                      .+....++|.++++++.++.--+.-|+..+..+...  ....+++++.        .++..++. +.+.....+...++.
T Consensus       184 fLltTeivPLcLrIme~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iR  261 (315)
T COG5209         184 FLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIR  261 (315)
T ss_pred             HHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            788889999999999998877788888888888763  3444444431        22333322 223344555666555


Q ss_pred             HHHHHH
Q 009184          447 GLENIL  452 (541)
Q Consensus       447 ~L~~l~  452 (541)
                      +.-.+.
T Consensus       262 cYlRLs  267 (315)
T COG5209         262 CYLRLS  267 (315)
T ss_pred             Hheeec
Confidence            544443

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=85.32  E-value=6.2  Score=32.04  Aligned_cols=72  Identities=17%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc-CChHHHhhhcCCCCh--------HHHHHHHHHHHHHH
Q 009184          382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDP--------RIVTVCLEGLENIL  452 (541)
Q Consensus       382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~--------~~~~~~l~~L~~l~  452 (541)
                      ++..|..-|...++.|+..++.+|-.++..|.+.....+.+. ..|+.+..+-..+|+        .|+..|-+++..|+
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if  118 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF  118 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence            667888888888999999999999999999988887777653 456666655543333        46666666666655


Q ss_pred             H
Q 009184          453 K  453 (541)
Q Consensus       453 ~  453 (541)
                      .
T Consensus       119 ~  119 (122)
T cd03572         119 S  119 (122)
T ss_pred             c
Confidence            3

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=85.01  E-value=3.1  Score=34.97  Aligned_cols=74  Identities=8%  Similarity=0.030  Sum_probs=59.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~  146 (541)
                      +.+..+.+.|+++++.++..|+..|-.+...-..+...++.+.+++..|+.+++...++.++..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            57788888899999999999999998887653234455677888999999999854458899999988888775

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=84.99  E-value=7.4  Score=30.18  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=56.0

Q ss_pred             HcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 009184          422 IQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL  501 (541)
Q Consensus       422 ~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il  501 (541)
                      ....+..|+.-++.+++.....++..+..+++....            ...+.+.|+.+-+.++...-+++.+.....|+
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            446677888888888777888889999888765422            55777899999999999999999998888887


Q ss_pred             HH
Q 009184          502 ET  503 (541)
Q Consensus       502 ~~  503 (541)
                      +.
T Consensus        96 ~~   97 (98)
T PF14726_consen   96 DQ   97 (98)
T ss_pred             hc
Confidence            64

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=84.57  E-value=20  Score=31.07  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC--CChHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLLYS-PSDDVREQAVWALGNIA---GDS  190 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~---~~~  190 (541)
                      .+..+..+|++++ +.-+-.++..+...+..++  .+.+.+.  ..+..++.+|+. +.+.+.+.++.++..|.   .+.
T Consensus        26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4667788888887 7888878777777766431  2333332  356788888887 55778888888888886   444


Q ss_pred             hhhHHHHHhc---CChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184          191 PRCRDLVLSQ---GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (541)
Q Consensus       191 ~~~r~~i~~~---g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  234 (541)
                      ++....+...   +++..++.++.+   ......++.+|..+....|
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHP  146 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCC
Confidence            5433333222   234444444421   5566677777777766543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.45  E-value=37  Score=32.04  Aligned_cols=189  Identities=14%  Similarity=0.099  Sum_probs=104.0

Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcC--chHHHHHhhcCC---CchhHHHHHHHHHHHHhcCChHH
Q 009184          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN---YKKSIKKEACWTVSNITAGNREQ  362 (541)
Q Consensus       288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~--~l~~L~~lL~~~---~~~~v~~~a~~~L~nl~~~~~~~  362 (541)
                      ..+..++..=..+.+-+++-.+.-++...+.. ..+...+  +...+..++...   ..+..+.-++.+++|+..+... 
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~-  143 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALHPPAS-DLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG-  143 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHH-HHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC-
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhCccHH-HHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc-
Confidence            44445554434456778888876666544332 2222211  244444444332   2667888899999999985333 


Q ss_pred             HHHHHhhchhhHHHHH-hcC--cHHHHHHHhhcC---chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc-CC
Q 009184          363 IQVIMHVHAFSIIAVI-EAN--IIGPLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL-VC  435 (541)
Q Consensus       363 ~~~~~~~~~~~~~~l~-~~~--~l~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL-~~  435 (541)
                      .+           .+. ..+  ++..+.....+.   +..++..++..+.|++..........=....++..+...+ ..
T Consensus       144 ~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~  212 (268)
T PF08324_consen  144 RQ-----------LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE  212 (268)
T ss_dssp             HH-----------HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC
T ss_pred             HH-----------HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc
Confidence            33           333 222  233333333332   6889999999999997521000000000111345555533 22


Q ss_pred             -CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh-cCCCHHHHHHHHHH
Q 009184          436 -PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKL  500 (541)
Q Consensus       436 -~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~i~~~a~~i  500 (541)
                       .|++....++-+|++++..+...           .......|....+.... ....+.+.+.+.+|
T Consensus       213 ~~d~Ea~~R~LvAlGtL~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  213 ESDEEALYRLLVALGTLLSSSDSA-----------KQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HTSHHHHHHHHHHHHHHHCCSHHH-----------HHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhccChhH-----------HHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence             68899999999999999555442           33344455555655553 56777777776654

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=84.14  E-value=91  Score=36.32  Aligned_cols=73  Identities=11%  Similarity=0.186  Sum_probs=55.6

Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHH
Q 009184          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI  405 (541)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL  405 (541)
                      .+++|.|..-|.+. +..+|..|...+|.+.+....+.            .=-...+....+.-+.+.+++||.+++...
T Consensus       258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l------------~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~  324 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQL------------SETYDDLWSAFLGRFNDISVEVRMECVESI  324 (1266)
T ss_pred             HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhh------------cccchHHHHHHHHHhccCChhhhhhHHHHh
Confidence            47899999999998 89999999999999987433221            100223555666667778899999999999


Q ss_pred             HHhccC
Q 009184          406 SNATSG  411 (541)
Q Consensus       406 ~nl~~~  411 (541)
                      .++...
T Consensus       325 ~~~l~~  330 (1266)
T KOG1525|consen  325 KQCLLN  330 (1266)
T ss_pred             HHHHhc
Confidence            998875

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=84.09  E-value=63  Score=34.47  Aligned_cols=157  Identities=20%  Similarity=0.208  Sum_probs=89.7

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CChhhHHHHHhcCChHHHHHhhcC---CChhhHHHHHHHHHHhh
Q 009184          161 VPIFVKLLYS----PSDDVREQAVWALGNIAG----DSPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSNF  229 (541)
Q Consensus       161 i~~L~~lL~~----~~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~i~~Ll~~l~~---~~~~~~~~~a~~~L~~l  229 (541)
                      +..+..++.+    +.+.++..|+.+++++..    +.+.+...+. ...++.+...|..   ..+..-+..++.+|.|+
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            4556666654    457788888888887762    2221111111 2255666665532   33444556667777776


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHH
Q 009184          230 CRGKPQPPFDQVSPALPALAHLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIP  304 (541)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~  304 (541)
                      -..          ..++.+...+.   ..+..++..|+|+|..++...+..        +-+.++++..+  .++++|..
T Consensus       474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHH
Confidence            542          23455555554   224679999999999887655443        23556666644  45778888


Q ss_pred             HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHH
Q 009184          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK  346 (541)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~  346 (541)
                      |+..|...   .+..       ..+..+...+....+..|+.
T Consensus       536 A~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~s  567 (574)
T smart00638      536 AVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVAS  567 (574)
T ss_pred             HHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHH
Confidence            87776432   1211       23445666666553444443

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=83.87  E-value=13  Score=41.85  Aligned_cols=236  Identities=18%  Similarity=0.187  Sum_probs=128.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCC--------HHHHHHhhcCCCcHHHHHHHHHHHHHHh
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV--------VPRFVEFLLREDYPQLQFEAAWALTNIA  145 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~--------i~~Lv~lL~~~~~~~i~~~a~~~L~~l~  145 (541)
                      .+..+++.+.++.++.|.-++..++.++...........++.-+        +..+=+++...-...+++.++|+|..+.
T Consensus        78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l  157 (1549)
T KOG0392|consen   78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL  157 (1549)
T ss_pred             HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence            46778888889999999999999999887643222222222111        1122222222212468899999999887


Q ss_pred             cCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhcCCChhhHHHHHH
Q 009184          146 SGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNGQPKLSMLRNAT  223 (541)
Q Consensus       146 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~Ll~~l~~~~~~~~~~~a~  223 (541)
                      ....+...    ...+..+.+++..+..+++...+..+.....   ..++.+..  ..+++.++..| .+.+..++..+.
T Consensus       158 ~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~aa  229 (1549)
T KOG0392|consen  158 KHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVAA  229 (1549)
T ss_pred             HhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHHH
Confidence            74322211    1235667777777766666555444432221   11122110  01334444555 566778888888


Q ss_pred             HHHHhhhcCCCCCChhhhhchHHHHHHhhccCCh-hH-HHHHHHHHHHhccCChH--H-HHHHHHhCcHHHHHHhhCCCC
Q 009184          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD-EV-LTDACWALSYLSDGTND--K-IQAVIEAGVFPRLAEFLMHPS  298 (541)
Q Consensus       224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v-~~~a~~~L~~l~~~~~~--~-~~~~~~~g~l~~L~~lL~~~~  298 (541)
                      ..+.-.....+......+..++..+...+..-+. .- .......+..++.....  . .+.-.+.|+++.+..++.+.=
T Consensus       230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i  309 (1549)
T KOG0392|consen  230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI  309 (1549)
T ss_pred             HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence            8777666554333333334444444444332221 00 01111122222222210  0 111223489999999998887


Q ss_pred             hhhHHHHHHHHhHhhcCCc
Q 009184          299 PSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       299 ~~v~~~al~~L~nl~~~~~  317 (541)
                      ..++..++..+..+.+..+
T Consensus       310 ~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  310 SSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            7888899998888876544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=83.60  E-value=3.9  Score=34.45  Aligned_cols=74  Identities=12%  Similarity=0.071  Sum_probs=60.1

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~  146 (541)
                      +.+..+.+.|.+.++.+++.|+..|-.+...-+.....++.+..++..|+.+++...++.++..++..+...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            46778888888999999999999999888764334455777888999999999884448999999988888775

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=83.54  E-value=11  Score=31.62  Aligned_cols=72  Identities=11%  Similarity=0.047  Sum_probs=58.6

Q ss_pred             cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHH
Q 009184          382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILK  453 (541)
Q Consensus       382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~  453 (541)
                      ++..|..-+.++++.++..|+..|-.++.++.......+.+.+++..|..++.. .++.|...++..+..-..
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            566778888889999999999999999988777777777888999999998874 566788888777766554

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=83.20  E-value=11  Score=35.93  Aligned_cols=138  Identities=13%  Similarity=0.190  Sum_probs=77.5

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT-KVVIDHGAVPIFVK----LLY--------SPSDDVREQAVWAL  183 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~----lL~--------~~~~~v~~~a~~~L  183 (541)
                      ++|.++.++.+.. +.++..++.+|..+....+... ..+...|..+.+-.    ++.        .++..+...+.-++
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            6999999999987 9999999999999998544333 23555665544433    333        24566777777777


Q ss_pred             HHhhCC----ChhhHHHHHhcCChHHHHHhhcCCC---hhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC
Q 009184          184 GNIAGD----SPRCRDLVLSQGGLVPLLAQLNGQP---KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN  255 (541)
Q Consensus       184 ~nl~~~----~~~~r~~i~~~g~i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~  255 (541)
                      ..++.-    ....|......-.-..++.-+....   .+.+....+..+..+...-..........+++.+...+.++
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            777421    1111222111111111333222222   36666666666665555432333334456666666655544

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.14  E-value=13  Score=30.80  Aligned_cols=74  Identities=8%  Similarity=-0.060  Sum_probs=59.1

Q ss_pred             cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC---CChHHHHHHHHHHHHHHHhh
Q 009184          382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC---PDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~---~~~~~~~~~l~~L~~l~~~~  455 (541)
                      ++..|..-+.++++.++..|+..|-.++.++.......+.+...+..|..++..   .++.+...++..+.......
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            556777888889999999999999999988877777777777788889998875   46778888888777665543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=82.67  E-value=12  Score=31.57  Aligned_cols=71  Identities=8%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHH
Q 009184          382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENIL  452 (541)
Q Consensus       382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~  452 (541)
                      ++..|..-+.+.++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|...++..+....
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~  109 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA  109 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            556777778889999999999999999998888888888888999999999987 67788887777666654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=82.60  E-value=12  Score=36.93  Aligned_cols=218  Identities=18%  Similarity=0.119  Sum_probs=106.8

Q ss_pred             HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009184          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (541)
Q Consensus       113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  192 (541)
                      +...++..|..++..+.++......+.++..-...-    ..-+...++..+.+-+.+..+.+|..-+..++.+....+.
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            334467777777776655666666666666544311    0011123456666777776677999988888888751110


Q ss_pred             hHHHHHhcCChHHHHHhhcC---CChhhHH---HHHHHHHHhhhcCC-CCCCh-hh-----hhchHHH-H--HHhhcc-C
Q 009184          193 CRDLVLSQGGLVPLLAQLNG---QPKLSML---RNATWTLSNFCRGK-PQPPF-DQ-----VSPALPA-L--AHLIHS-N  255 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~~---~~~~~~~---~~a~~~L~~l~~~~-~~~~~-~~-----~~~~l~~-L--~~lL~~-~  255 (541)
                      ....-.-..+++.|+..+..   ++-...+   ..++.++..++... +.... ..     ..+-=|. +  -+++.. .
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~  174 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA  174 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence            00011112256667766631   1111111   11111111111111 00000 00     0000000 0  022222 3


Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHH
Q 009184          256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLL  333 (541)
Q Consensus       256 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~  333 (541)
                      +++-....+.++..+..........-.....-..++.++-++  .+.+|..|+.++..+....+..    +...++..+-
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~  250 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW  250 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence            444455556666555544332111111223556677777777  8999999999999998877753    2334455555


Q ss_pred             HhhcC
Q 009184          334 NLLSG  338 (541)
Q Consensus       334 ~lL~~  338 (541)
                      ..+..
T Consensus       251 ~~l~~  255 (339)
T PF12074_consen  251 KWLSS  255 (339)
T ss_pred             HHHHh
Confidence            55544

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=82.20  E-value=23  Score=36.39  Aligned_cols=143  Identities=16%  Similarity=0.118  Sum_probs=84.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-------cHHHHHHHHHHHHHHhc
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTNIAS  146 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-------~~~i~~~a~~~L~~l~~  146 (541)
                      -+.++.+.+-++++..+..|+..|+.      ++.++.+     +|.|+.++..+-       +-.+.......+..+..
T Consensus       208 Yy~~It~a~~g~~~~~r~eAL~sL~T------DsGL~~L-----lPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~  276 (576)
T KOG2549|consen  208 YYKEITEACTGSDEPLRQEALQSLET------DSGLQQL-----LPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD  276 (576)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcc------CccHHHH-----HHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence            56778888888899999999998752      4556554     888888886532       24555666666666665


Q ss_pred             CChhHHHHHHhCCChHHHHHhhCC----------CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCC-Ch
Q 009184          147 GTSEHTKVVIDHGAVPIFVKLLYS----------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQ-PK  215 (541)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~-~~  215 (541)
                       ++...-...-..++|.++.++-+          ....+|+.|+..+..+|.+-...-+. +...++..+.+.+.+. ..
T Consensus       277 -Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~  354 (576)
T KOG2549|consen  277 -NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKP  354 (576)
T ss_pred             -CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCC
Confidence             44443332223467777766532          34678888888888887544332222 2333455555555333 23


Q ss_pred             hhHHHHHHHHHHhh
Q 009184          216 LSMLRNATWTLSNF  229 (541)
Q Consensus       216 ~~~~~~a~~~L~~l  229 (541)
                      .....-++..|..|
T Consensus       355 ~st~YGai~gL~~l  368 (576)
T KOG2549|consen  355 LSTHYGAIAGLSEL  368 (576)
T ss_pred             chhhhhHHHHHHHh
Confidence            33333344444433

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.44  E-value=65  Score=37.21  Aligned_cols=60  Identities=17%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 009184          438 PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLET  503 (541)
Q Consensus       438 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~  503 (541)
                      .+.....+.+|..++.-.-+.-.    ..|.+....+  ..++-+..+..+.++++.-.|..-+++
T Consensus      1070 tet~~ltisgIaklf~e~fk~ll----nln~f~~vwe--~ll~flkrl~s~~s~e~slsai~~~qe 1129 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLL----NLNGFLDVWE--ELLQFLKRLHSDISPEISLSAIKALQE 1129 (1610)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHH----hcccHHHHHH--HHHHHHHHHHhcCChHhHHHHHHHHHH
Confidence            34555666777776653322211    1233333322  235556666677888887776665554

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=81.14  E-value=3.7  Score=37.32  Aligned_cols=79  Identities=22%  Similarity=0.230  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHhCC-------ChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh-hHHHHHhcCC
Q 009184          132 QLQFEAAWALTNIASGTSEHTKVVIDHG-------AVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR-CRDLVLSQGG  202 (541)
Q Consensus       132 ~i~~~a~~~L~~l~~~~~~~~~~i~~~g-------~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~g~  202 (541)
                      .-|..|+.+|+.++- ...+.+.++..+       ++..|++++.. +++-.||.|+-.|.++|..+.. +|....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            458889999999987 345555554443       33455566654 7899999999999999965554 5566678889


Q ss_pred             hHHHHHhhc
Q 009184          203 LVPLLAQLN  211 (541)
Q Consensus       203 i~~Ll~~l~  211 (541)
                      +..|+.++.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999994

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=80.89  E-value=5.6  Score=33.01  Aligned_cols=74  Identities=9%  Similarity=0.001  Sum_probs=56.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHH-HHHHHHHHHHHHhc
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-LQFEAAWALTNIAS  146 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~-i~~~a~~~L~~l~~  146 (541)
                      +.+..+.+.|+++++.++..|+..+-.+...-..+...++...+++..|+.+++...+.. ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            467778888889999999999999988887542334456667788999999888765333 88888877777665

Unpublished observations. Domain of unknown function.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=80.58  E-value=17  Score=30.36  Aligned_cols=72  Identities=10%  Similarity=-0.026  Sum_probs=57.7

Q ss_pred             cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC------CChHHHHHHHHHHHHHHH
Q 009184          382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILK  453 (541)
Q Consensus       382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~~l~~L~~l~~  453 (541)
                      ++..|..-+.++++.++..|+..|-.++.++.......+.+.+++..|+.++..      .++.|...++..+..-..
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            556677888899999999999999999988777777788888999999999853      456788877776665543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1988 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.07  E-value=63  Score=35.25  Aligned_cols=251  Identities=14%  Similarity=0.119  Sum_probs=149.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i  155 (541)
                      -.+=++++++....+.+++..+-++.... +.+  .++++ .+-.|.+.+..++ ..++...+++...-    ......+
T Consensus        27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiNs-~llrLaDaF~~Gn-~llRf~V~rv~~q~----g~hln~v   97 (970)
T KOG1988|consen   27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFINS-QLLRLADAFPVGN-NLLRFAVLRVDQQS----GKHLNKV   97 (970)
T ss_pred             HHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhhH-HHHHHHHHhccCc-HHHHHHHHHHHhhc----cccchhh
Confidence            34445788877777888888888876543 222  33333 3556677777777 78888887777631    2222233


Q ss_pred             Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184          156 ID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (541)
Q Consensus       156 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  234 (541)
                      .. ...+..+.....+.|+.-+..++..++.+..--|       +....+.++..-..+.++--.+.++.+...++....
T Consensus        98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk  170 (970)
T KOG1988|consen   98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK  170 (970)
T ss_pred             hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence            32 2334444445567889999999999998764433       334455555554355555556677777777765431


Q ss_pred             CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhH
Q 009184          235 QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGN  311 (541)
Q Consensus       235 ~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~n  311 (541)
                          ....++.-.+..++...+  .......+.+++.+......      -..+....++++ +++..+....-+.++.+
T Consensus       171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~  240 (970)
T KOG1988|consen  171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN  240 (970)
T ss_pred             ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence                122334444555555443  33456677777777644321      123445566666 34455555566777777


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      ++...-     ..-.+-++.|.+.++.+....++..+.|.+.+++.
T Consensus       241 Lasrs~-----~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~  281 (970)
T KOG1988|consen  241 LASRSL-----VAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK  281 (970)
T ss_pred             HHHHHH-----HHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            765322     12245567788888765466777778888888765

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.06  E-value=57  Score=38.91  Aligned_cols=231  Identities=16%  Similarity=0.070  Sum_probs=116.5

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDL  196 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (541)
                      +..++..|..++ |..+..+..+++.++..-++.  .++ .+....++.-+.+ .++-.|..-..+++.+-.+.......
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            334444555555 667766777776666521111  111 1123344444433 55555555555555553222111111


Q ss_pred             HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCC---hhHHHHHHH--------
Q 009184          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSND---DEVLTDACW--------  265 (541)
Q Consensus       197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d---~~v~~~a~~--------  265 (541)
                      -.....+..++.+..++.++.++..++.++..+...........+...+..+..+|.+..   .++...--+        
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            111123556666665667779999999999988776533335555666666666665432   222111111        


Q ss_pred             -----HHHHhccCChH--HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcC
Q 009184          266 -----ALSYLSDGTND--KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG  338 (541)
Q Consensus       266 -----~L~~l~~~~~~--~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~  338 (541)
                           +++.=...+..  ... ......+-...-++.++++-++..++.++.++-...+.+..   -.-++..|..++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence                 11111111110  111 11122223333345667888899999999888766654321   12345666777766


Q ss_pred             CCchhHHHHHHHHHHHHhc
Q 009184          339 NYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       339 ~~~~~v~~~a~~~L~nl~~  357 (541)
                      . ..-.|.....++..+..
T Consensus      1110 ~-~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred             h-hhhhhhhHHhhhhHHhH
Confidence            6 44455555555555554

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=80.06  E-value=42  Score=29.70  Aligned_cols=74  Identities=19%  Similarity=0.235  Sum_probs=56.5

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (541)
                      .++.++++..+++ ..++..|+.++.-+....--+-     ...+|.|+.+..++++.++..|...+..+....+.+-+.
T Consensus         9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen    9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence            3667777777777 8999999999988877431111     125799999999999999999999999998666544333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	541
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-137
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-130
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-130
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-128
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-128
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-126
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-126
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-126
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-126
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-117
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-112
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-112
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-112
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-112
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-112
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-111
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-111
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-111
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-111
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-111
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-111
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-111
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-111
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-111
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-110
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		8e-35
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		7e-34
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		2e-27
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		1e-26
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-26
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		2e-24
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		5e-23
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		5e-21

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/513 (78%), Positives = 452/513 (88%), Gaps = 12/513 (2%)
Query: 1   MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLA 60
           MSLRP+ + + RRN+YKVAVDA+EGRRRREDNMVEIRK++REESL KKRREGLQ Q P+ 
Sbjct: 3   MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVP 62
Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
               A G  KKLE+LP M+ GV+S+D+ +Q E TTQFRKLLSIERSPPIEEVI+SGVVPR
Sbjct: 63  ASA-ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPR 121
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGAVPIFVKLL S SDDVREQAV
Sbjct: 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAV 181
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ 240
           WALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLRNATWTLSNFCRGKPQP F+Q
Sbjct: 182 WALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ 241
Query: 241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPS 300
             PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGV PRL E L+HPSPS
Sbjct: 242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPS 301
Query: 301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR 360
           VLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N KKSIKKEACWT+SNITAGN+
Sbjct: 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK 361
Query: 361 EQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
           +QIQ           AVI A IIGPLV LL+ AEFDIKKEAAWAISNATSGG+H+QIK+L
Sbjct: 362 DQIQ-----------AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYL 410
Query: 421 VIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE 480
           V +GCIKPLCDLL+CPD RIVTVCLEGLENILKVGE +K L   DVNVF+QMID+AEGLE
Sbjct: 411 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLE 470
Query: 481 KIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 513
           KIE+LQ+HDN EIYEK+VK+LE YW+D+ED+TM
Sbjct: 471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM 503

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/473 (75%), Positives = 405/473 (85%), Gaps = 12/473 (2%)
Query: 41  REESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKL 100
           +E +  K  R+ + +   L  D +    A    +LP M+ GV+S+D+ +Q E TTQFRKL
Sbjct: 5   KETAAAKFERQHMDSPD-LGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKL 63
Query: 101 LSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA 160
           LSIERSPPIEEVI+SGVVPRFV+FL RED+PQLQFEAAWALTNIASGTSE+TKVVIDHGA
Sbjct: 64  LSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA 123
Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR 220
           VPIFVKLL S SDDVREQAVWALGN+AGDSP+CRDLVL+ G L+PLLAQLN   KLSMLR
Sbjct: 124 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLR 183
Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQA 280
           NATWTLSNFCRGKPQP F+Q  PALPALA LIHSND+EVLTDACWALSYLSDGTNDKIQA
Sbjct: 184 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 243
Query: 281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNY 340
           VIEAGV PRL E L+HPSPSVLIPALRTVGNIVTGDD QTQC+I++QALPCLL+LL+ N 
Sbjct: 244 VIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 303
Query: 341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE 400
           KKSIKKEACWT+SNITAGN++QIQ           AVI A IIGPLV LL+ AEFDIKKE
Sbjct: 304 KKSIKKEACWTISNITAGNKDQIQ-----------AVINAGIIGPLVNLLQTAEFDIKKE 352
Query: 401 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKN 460
           AAWAISNATSGG+H+QIK+LV +GCIKPLCDLL+CPD RIVTVCLEGLENILKVGE +K 
Sbjct: 353 AAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKT 412
Query: 461 LGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 513
           L   DVNVF+QMID+AEGLEKIE+LQ+HDN EIYEK+VK+LE YW+D+ED+TM
Sbjct: 413 LAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM 465

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  484 bits (1245), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 276/528 (52%), Positives = 355/528 (67%), Gaps = 30/528 (5%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRR-----EGLQNQQPL 59
           P  +  + +NK + +  ADE RRRR+   VE+RK KR+E+L K+R      +G  + +  
Sbjct: 14  PEYRRTNFKNKGRFS--ADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71
Query: 60  ANDVNAPGT--AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
            + V+A     ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131
Query: 118 VPRFVEFLLREDYPQ-LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           VPR VEF+ RE+ P+ LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+
Sbjct: 132 VPRLVEFM-RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQ 235
           EQA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRG KPQ
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQ 249
Query: 236 PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
           P +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L 
Sbjct: 250 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           H S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNI
Sbjct: 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNI 368
Query: 356 TAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH- 414
           TAGN EQIQ           AVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG   
Sbjct: 369 TAGNTEQIQ-----------AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR 417
Query: 415 -EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI 473
            + I++LV QGCIKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I
Sbjct: 418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 477
Query: 474 DDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDE---DETMPPGDA 518
           + A G+EKI + Q ++N +IYEK+ K++ETY+ ++E   DETM P +A
Sbjct: 478 EKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNA 525

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/438 (57%), Positives = 309/438 (70%), Gaps = 15/438 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ           
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQ----------- 309
Query: 376 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 435
            VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL  
Sbjct: 310 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 369
Query: 436 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 495
            D +IV V L GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+
Sbjct: 370 MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQ 429
Query: 496 KSVKLLETYW-LDDEDET 512
           K+  L+E Y+  +DED +
Sbjct: 430 KAFDLIEHYFGTEDEDSS 447

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  461 bits (1186), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/438 (57%), Positives = 309/438 (70%), Gaps = 15/438 (3%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFE 136
           M+  ++S     Q   T +FRKLLS E +PPI+EVI + GVV RFVEFL R++   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 137 AAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL 196
           +AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+EQAVWALGNIAGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN 255
           VL    L PLL   + Q +L+M RNA W LSN CRGK  PP F +VSP L  L+ L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTG 315
           D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 316 DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375
           DD+QTQ ++   AL   L  L  + K+SIKKEACWT+SNITAGNR QIQ           
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQ----------- 312
Query: 376 AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC 435
            VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQIK+LV  GCIKPLCDLL  
Sbjct: 313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 372
Query: 436 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 495
            D +IV V L GLENIL++GE E     T +N +  +I++A GL+KIE LQ+H+N EIY+
Sbjct: 373 MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQ 432
Query: 496 KSVKLLETYW-LDDEDET 512
           K+  L+E Y+  +DED +
Sbjct: 433 KAFDLIEHYFGTEDEDSS 450

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/451 (56%), Positives = 314/451 (69%), Gaps = 21/451 (4%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQ        
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQ-------- 290
Query: 373 SIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLC 430
              AVI+AN+I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLC
Sbjct: 291 ---AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 347
Query: 431 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 490
           DLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N
Sbjct: 348 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 407
Query: 491 AEIYEKSVKLLETYWLDDE---DETMPPGDA 518
            +IYEK+ K++ETY+ ++E   DETM P +A
Sbjct: 408 DKIYEKAYKIIETYFGEEEDAVDETMAPQNA 438

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/451 (56%), Positives = 314/451 (69%), Gaps = 21/451 (4%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 60
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
           VTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN EQIQ        
Sbjct: 240 VTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTEQIQ-------- 290
Query: 373 SIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLC 430
              AVI+AN+I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKPLC
Sbjct: 291 ---AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 347
Query: 431 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 490
           DLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N
Sbjct: 348 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 407
Query: 491 AEIYEKSVKLLETYWLDDE---DETMPPGDA 518
            +IYEK+ K++ETY+ ++E   DETM P +A
Sbjct: 408 DKIYEKAYKIIETYFGEEEDAVDETMAPQNA 438

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  450 bits (1157), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/435 (56%), Positives = 304/435 (69%), Gaps = 18/435 (4%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQ        
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ-------- 289
Query: 373 SIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLC 430
              AVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLC
Sbjct: 290 ---AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 346
Query: 431 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 490
           DLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q ++N
Sbjct: 347 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 406
Query: 491 AEIYEKSVKLLETYW 505
            +IYEK+ K++ETY+
Sbjct: 407 DKIYEKAYKIIETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  449 bits (1154), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/435 (56%), Positives = 304/435 (69%), Gaps = 18/435 (4%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ-L 133
           LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPEML 59
Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
           Q EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS   
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAHLI 252
           RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
           +S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
           VTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQ        
Sbjct: 239 VTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ-------- 289
Query: 373 SIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLC 430
              AVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++LV QGCIKPLC
Sbjct: 290 ---AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 346
Query: 431 DLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN 490
           DLL   D RI+ V L+ LENI+K+GEA+K     ++N     I+ A G+EKI + Q ++N
Sbjct: 347 DLLEIADNRIIEVTLDALENIIKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 406
Query: 491 AEIYEKSVKLLETYW 505
            +IYEK+ K++ETY+
Sbjct: 407 DKIYEKAYKIIETYF 421

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/437 (56%), Positives = 304/437 (69%), Gaps = 18/437 (4%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQ      
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ------ 291
Query: 371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKP 428
                AVI+AN+I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKP
Sbjct: 292 -----AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 346
Query: 429 LCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH 488
           LCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q +
Sbjct: 347 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 406
Query: 489 DNAEIYEKSVKLLETYW 505
           +N +IYEK+ K++ETY+
Sbjct: 407 ENDKIYEKAYKIIETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/437 (56%), Positives = 304/437 (69%), Gaps = 18/437 (4%)
Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR VEF+ RE+ P+
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM-RENQPE 59
Query: 133 -LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP 191
            LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WALGN+AGDS 
Sbjct: 60  MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 119
Query: 192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG-KPQPPFDQVSPALPALAH 250
             RD VL    + P+L   N   K S++R ATWTLSN CRG KPQP +  VS ALP LA 
Sbjct: 120 DYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 178
Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V  PALR VG
Sbjct: 179 LIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 238
Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH 370
           NIVTG+D+QTQ VI    LP L  LLS   K++IKKEACWT+SNITAGN EQIQ      
Sbjct: 239 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ------ 291
Query: 371 AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKP 428
                AVI+AN+I PLV LLE AE   KKEA WAISNA+SGG    + I++LV QGCIKP
Sbjct: 292 -----AVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP 346
Query: 429 LCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH 488
           LCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+EKI + Q +
Sbjct: 347 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 406
Query: 489 DNAEIYEKSVKLLETYW 505
           +N +IYEK+ K++ETY+
Sbjct: 407 ENDKIYEKAYKIIETYF 423

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/528 (45%), Positives = 329/528 (62%), Gaps = 36/528 (6%)
Query: 5   PNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGL---QNQQPLAN 61
           P ++ +  +NK K   D+ E RRRR +  VE+RK K++E + K+R           PL  
Sbjct: 10  PAARLNRFKNKGK---DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQE 66
Query: 62  DVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+
Sbjct: 67  NRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 123
Query: 121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAV 180
           FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAV
Sbjct: 124 FVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAV 183
Query: 181 WALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-P 234
           WALGNIAG     RDLV+  G + PLLA L   P LS      LRN TWTLSN CR K P
Sbjct: 184 WALGNIAGAGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNP 242
Query: 235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
            PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L
Sbjct: 243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL 302
Query: 295 MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN 354
                 ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SN
Sbjct: 303 GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSN 361
Query: 355 ITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 414
           ITAG ++QIQ            V+   ++  LV +L  A+F  +K AAWAI+N TSGGT 
Sbjct: 362 ITAGRQDQIQ-----------QVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV 410
Query: 415 EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMID 474
           EQI +LV  G I+PL +LL   D +I+ V L+ + NI +  E    LG T+    + MI+
Sbjct: 411 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIE 465
Query: 475 DAEGLEKIESLQTHDNAEIYEKSVKLLETYWL--DDEDETMPPGDASQ 520
           +  GL+KIE+LQ H+N  +Y+ S+ L+E Y+   ++ED+ + P   S+
Sbjct: 466 ECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSE 513

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/440 (49%), Positives = 288/440 (65%), Gaps = 24/440 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 168 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 226
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 227 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 286
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 287 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 338
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 339 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 394
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 395 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 449
Query: 492 EIYEKSVKLLETYWLDDEDE 511
            +Y+ S+ L+E Y+  +E+E
Sbjct: 450 SVYKASLNLIEKYFSVEEEE 469

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  400 bits (1029), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/440 (49%), Positives = 288/440 (65%), Gaps = 24/440 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 352
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 353 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 409 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 463
Query: 492 EIYEKSVKLLETYWLDDEDE 511
            +Y+ S+ L+E Y+  +E+E
Sbjct: 464 SVYKASLNLIEKYFSVEEEE 483

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/440 (49%), Positives = 288/440 (65%), Gaps = 24/440 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 352
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 353 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 409 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 463
Query: 492 EIYEKSVKLLETYWLDDEDE 511
            +Y+ S+ L+E Y+  +E+E
Sbjct: 464 SVYKASLNLIEKYFSVEEEE 483

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/440 (49%), Positives = 288/440 (65%), Gaps = 24/440 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 182 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 301 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 352
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 353 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 408
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 409 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 463
Query: 492 EIYEKSVKLLETYWLDDEDE 511
            +Y+ S+ L+E Y+  +E+E
Sbjct: 464 SVYKASLNLIEKYFSVEEEE 483

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  400 bits (1028), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/451 (48%), Positives = 293/451 (64%), Gaps = 26/451 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 138 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 196
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 197 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 256
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 308
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 309 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 364
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 365 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 419
Query: 492 EIYEKSVKLLETYWL--DDEDETMPPGDASQ 520
            +Y+ S+ L+E Y+   ++ED+ + P   S+
Sbjct: 420 SVYKASLNLIEKYFSVEEEEDQNVVPETTSE 450

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/451 (48%), Positives = 293/451 (64%), Gaps = 26/451 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 302
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 303 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 358
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 359 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 413
Query: 492 EIYEKSVKLLETYWL--DDEDETMPPGDASQ 520
            +Y+ S+ L+E Y+   ++ED+ + P   S+
Sbjct: 414 SVYKASLNLIEKYFSVEEEEDQNVVPETTSE 444

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 284/434 (65%), Gaps = 24/434 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 166 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 224
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 225 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 284
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 285 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 336
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 337 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 392
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 393 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 447
Query: 492 EIYEKSVKLLETYW 505
            +Y+ S+ L+E Y+
Sbjct: 448 SVYKASLNLIEKYF 461

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/455 (48%), Positives = 293/455 (64%), Gaps = 28/455 (6%)
Query: 58  PLANDVNAPGTAK-KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
           PL  + N  GT    +E++   V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G
Sbjct: 20  PLQENRNNQGTVNWSVEDI---VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 76
Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++P+FV FL + D   +QFE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + 
Sbjct: 77  LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 136
Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCR 231
           EQAVWALGNIAGD    RDLV+  G + PLLA L   P LS      LRN TWTLSN CR
Sbjct: 137 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCR 195
Query: 232 GK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL 290
            K P PP D V   LP L  L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L
Sbjct: 196 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 255
Query: 291 AEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACW 350
            + L      ++ PALR +GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA W
Sbjct: 256 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATW 314
Query: 351 TVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS 410
           T+SNITAG ++QIQ            V+   ++  LV +L  A+F  +KEAAWAI+N TS
Sbjct: 315 TMSNITAGRQDQIQ-----------QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 363
Query: 411 GGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT 470
           GGT EQI +LV  G I+PL +LL   D +I+ V L+ + NI +  E    LG T+    +
Sbjct: 364 GGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLS 418
Query: 471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW 505
            MI++  GL+KIE+LQ H+N  +Y+ S+ L+E Y+
Sbjct: 419 IMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 284/434 (65%), Gaps = 24/434 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 297
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 298 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 353
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 354 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 408
Query: 492 EIYEKSVKLLETYW 505
            +Y+ S+ L+E Y+
Sbjct: 409 SVYKASLNLIEKYF 422

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 284/434 (65%), Gaps = 24/434 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 301
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 302 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 357
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 358 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 412
Query: 492 EIYEKSVKLLETYW 505
            +Y+ S+ L+E Y+
Sbjct: 413 SVYKASLNLIEKYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 284/434 (65%), Gaps = 24/434 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 131 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 189
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 190 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 249
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 250 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 301
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 302 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 357
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 358 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 412
Query: 492 EIYEKSVKLLETYW 505
            +Y+ S+ L+E Y+
Sbjct: 413 SVYKASLNLIEKYF 426

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 284/434 (65%), Gaps = 24/434 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 302
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 303 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 358
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 359 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 413
Query: 492 EIYEKSVKLLETYW 505
            +Y+ S+ L+E Y+
Sbjct: 414 SVYKASLNLIEKYF 427

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 284/434 (65%), Gaps = 24/434 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 132 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 190
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 191 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 250
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 251 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 302
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 303 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 358
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 359 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 413
Query: 492 EIYEKSVKLLETYW 505
            +Y+ S+ L+E Y+
Sbjct: 414 SVYKASLNLIEKYF 427

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/434 (49%), Positives = 284/434 (65%), Gaps = 24/434 (5%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P LS      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 127 IKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 185
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GN
Sbjct: 186 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 245
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 246 IVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 297
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +
Sbjct: 298 ----QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN 353
Query: 432 LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNA 491
           LL   D +I+ V L+ + NI +  E    LG T+    + MI++  GL+KIE+LQ H+N 
Sbjct: 354 LLSAKDTKIIQVILDAISNIFQAAE---KLGETE--KLSIMIEECGGLDKIEALQRHENE 408
Query: 492 EIYEKSVKLLETYW 505
            +Y+ S+ L+E Y+
Sbjct: 409 SVYKASLNLIEKYF 422

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/444 (48%), Positives = 286/444 (64%), Gaps = 32/444 (7%)
Query: 78  MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEA 137
           +V G+ S++   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 138 AWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 198 LSQGGLVPLLAQLNGQPKLS-----MLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHL 251
           +  G + PLLA L   P +S      LRN TWTLSN CR K P PP D V   LP L  L
Sbjct: 133 IKYGAVDPLLALL-AVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRL 191
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN 311
           +H +D EVL D CWA+SYL+DG N++I  V++ GV P+L + L      ++ PALR +GN
Sbjct: 192 LHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGN 251
Query: 312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA 371
           IVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ       
Sbjct: 252 IVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ------- 303
Query: 372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCD 431
                V+   ++  LV++L  A+F  +KEA WA++N TSGGT EQI +LV  G I+PL +
Sbjct: 304 ----QVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMN 359
Query: 432 LLVCPDPRIVTVCLEGLENIL----KVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT 487
           LL   D +I+ V L+ + NI     K+GE EK          + MI++  GL+KIE+LQ 
Sbjct: 360 LLTAKDTKIILVILDAISNIFQAAEKLGETEK---------LSIMIEECGGLDKIEALQN 410
Query: 488 HDNAEIYEKSVKLLETYWLDDEDE 511
           H+N  +Y+ S+ L+E Y+  +E+E
Sbjct: 411 HENESVYKASLSLIEKYFSVEEEE 434

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  144 bits (364), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 128/225 (56%), Gaps = 8/225 (3%)
Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG---KPQPPFDQVSPALPALAHL 251
             V+  G L P L QL   P   +L+ A W LSN   G   + Q   D  + ALPAL  L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 252 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
           + S ++++L +A WALS ++ G N++ QAV EAG   +L +   H
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 233

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 97/259 (37%), Positives = 142/259 (54%), Gaps = 26/259 (10%)
Query: 245 LPALAHLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           LP +   ++S+D +    A    S  LSDG N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 364 QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 423
           Q           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  
Sbjct: 132 Q-----------AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDA 179
Query: 424 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE 483
           G +  L  LL  P+ +I+   L  L NI   G  +K           Q + +A  LEK+E
Sbjct: 180 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-----------QAVKEAGALEKLE 228
Query: 484 SLQTHDNAEIYEKSVKLLE 502
            LQ+H+N +I +++ + LE
Sbjct: 229 QLQSHENEKIQKEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/207 (38%), Positives = 111/207 (53%), Gaps = 13/207 (6%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 VIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG 424
                      AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G
Sbjct: 133 -----------AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAG 180
Query: 425 CIKPLCDLLVCPDPRIVTVCLEGLENI 451
               L  L   P+ +I     E LE I
Sbjct: 181 AEPALEQLQSSPNEKIQKEAQEALEKI 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  117 bits (294), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 112/207 (54%), Gaps = 13/207 (6%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP 304
           LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ 364
           AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 365 VIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQG 424
                      AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   G
Sbjct: 133 -----------AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAG 180
Query: 425 CIKPLCDLLVCPDPRIVTVCLEGLENI 451
            ++ L  L    + +I     E LE +
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 115/216 (53%), Gaps = 24/216 (11%)
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P++ + L  P    L  ALR +  I +G + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS 406
           EA W +SNI +G  EQIQ           AVI+A  +  LV LL +    I +EA WA+S
Sbjct: 73  EALWALSNIASGGNEQIQ-----------AVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 407 NATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDV 466
           N  SGG +EQI+ ++  G +  L  LL  P+ +I+   L  L NI   G  +K       
Sbjct: 122 NIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------- 173
Query: 467 NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 502
               Q + +A  LEK+E LQ+H+N +I +++ + LE
Sbjct: 174 ----QAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 15/208 (7%)
Query: 245 LPALAHLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
           LP +   ++S+D +    A    S  LSDG N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 364 QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 423
           Q           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + +   
Sbjct: 132 Q-----------AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEA 179
Query: 424 GCIKPLCDLLVCPDPRIVTVCLEGLENI 451
           G ++ L  L    + +I     E LE +
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 24/216 (11%)
Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
            P++ + L        + A R    I++  + Q Q VI+  ALP L+ LLS +  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS 406
           EA W +SNI +G  EQIQ           AVI+A  +  LV LL +    I +EA WA+S
Sbjct: 73  EALWALSNIASGGNEQIQ-----------AVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 407 NATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDV 466
           N  SGG +EQI+ ++  G +  L  LL  P+ +I+   L  L NI   G  +K       
Sbjct: 122 NIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------- 173
Query: 467 NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 502
               Q + +A  LEK+E LQ+H+N +I +++ + LE
Sbjct: 174 ----QAVKEAGALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 6/244 (2%)
Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V + V+ L   D  + Q EAA  L  IASG +   K ++D G V + VKLL S   +V++
Sbjct: 4   VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +A  AL NIA         ++  GG V +L +L       + + A   L+N   G P   
Sbjct: 63  EAARALANIASGPDEAIKAIVDAGG-VEVLVKLLTSTDSEVQKEAARALANIASG-PDEA 120
Query: 238 FDQVSPA--LPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM 295
              +  A  +  L  L+ S D EV  +A  AL+ ++ G ++ I+A+++AG    L + L 
Sbjct: 121 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 296 HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
                V   A R + NI +G     + +++   +  L  LL+ +    ++KEA   + NI
Sbjct: 181 STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT-STDSEVQKEAQRALENI 239
Query: 356 TAGN 359
            +G 
Sbjct: 240 KSGG 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	541
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	0.0
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-49
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-112
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-66
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-58
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-51
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-19
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-16
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-110
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-79
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-72
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-66
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-59
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-54
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-29
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-89
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-81
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-54
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-47
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-74
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	8e-63
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-71
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-28
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-66
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	9e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-12
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-12
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-58
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-27
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	8e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-17
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-57
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-51
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-31
3nmz_A	458	APC variant protein; protein-protein complex, arma	7e-23
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-47
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-36
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-20
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-39
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-37
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-19
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-38
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-20
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-07
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-14
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	2e-13
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	7e-13
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	3e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-11
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-10
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-10
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-09
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	5e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-06
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	7e-09
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	2e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	7e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-04
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	2e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  594 bits (1533), Expect = 0.0
 Identities = 268/532 (50%), Positives = 340/532 (63%), Gaps = 25/532 (4%)

Query: 7   SKADSRRNKYK--VAVDADEGRRRREDNMVEIRKNKREESLQKKRR-------EGLQNQQ 57
              + RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             + 
Sbjct: 12  FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEED 71

Query: 58  PLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGV 117
             +   +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GV
Sbjct: 72  ESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGV 131

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           VPR VEF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QA+WALGN+AGDS   RD VL    + P+L   N   K S++R ATWTLSN CRGK PQP
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTATWTLSNLCRGKKPQP 250

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            +  VS ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH 310

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
            S  V  PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNIT
Sbjct: 311 ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNIT 369

Query: 357 AGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH-- 414
           AGN EQIQ           AVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    
Sbjct: 370 AGNTEQIQ-----------AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP 418

Query: 415 EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMID 474
           + I++LV QGCIKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+
Sbjct: 419 DIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE 478

Query: 475 DAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFG 526
            A G+EKI + Q ++N +IYEK+ K++ETY+ ++ED           G  FG
Sbjct: 479 KAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTFG 530

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  564 bits (1455), Expect = 0.0
 Identities = 228/525 (43%), Positives = 307/525 (58%), Gaps = 29/525 (5%)

Query: 23  DEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV 82
             G   R   M E    K E         G  +      D+ +        ++  +V G+
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSN-QGTVNWSVEDIVKGI 66

Query: 83  WSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALT 142
            SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +QFE+AWALT
Sbjct: 67  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 126

Query: 143 NIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG 202
           NIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    RDLV+  G 
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186

Query: 203 LVPLLAQLNG----QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDD 257
           + PLLA L            LRN TWTLSN CR K P PP D V   LP L  L+H ND 
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +GNIVTG D
Sbjct: 247 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAV 377
            QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ            V
Sbjct: 307 EQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQ-----------QV 354

Query: 378 IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD 437
           +   ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL +LL   D
Sbjct: 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 414

Query: 438 PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKS 497
            +I+ V L+ + NI +  E        +    + MI++  GL+KIE+LQ H+N  +Y+ S
Sbjct: 415 TKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKAS 469

Query: 498 VKLLETYW--LDDEDETMPPGDASQPGFGFGGNGNPPAPSGGFNF 540
           + L+E Y+   ++ED+ + P   S+ GF F          G FNF
Sbjct: 470 LNLIEKYFSVEEEEDQNVVPETTSE-GFAFQV---QDGAPGTFNF 510

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  553 bits (1426), Expect = 0.0
 Identities = 253/456 (55%), Positives = 316/456 (69%), Gaps = 14/456 (3%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GV 117
               +N    A        M+  ++S     Q   T +FRKLLS E +PPI+EVI + GV
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V RFVEFL R++   LQFE+AW LTNIASG S  T++VI  GAVPIF++LL S  +DV+E
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQP 236
           QAVWALGNIAGDS  CRD VL    L PLL   + Q +L+M RNA W LSN CRGK P P
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F +VSP L  L+ L+  +D +VL DACWALSYLSDG NDKIQAVI+AGV  RL E LMH
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNIT 356
               V+ PALR VGNIVTGDD+QTQ ++   AL  LL+LLS + K+SIKKEACWT+SNIT
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS-SPKESIKKEACWTISNIT 304

Query: 357 AGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ 416
           AGNR QIQ            VI+ANI   L+++L+ AEF  +KEAAWAI+NATSGG+ EQ
Sbjct: 305 AGNRAQIQ-----------TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ 353

Query: 417 IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA 476
           IK+LV  GCIKPLCDLL   D +IV V L GLENIL++GE E     T +N +  +I++A
Sbjct: 354 IKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413

Query: 477 EGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET 512
            GL+KIE LQ+H+N EIY+K+  L+E Y+  +++++
Sbjct: 414 YGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  176 bits (447), Expect = 1e-49
 Identities = 61/365 (16%), Positives = 134/365 (36%), Gaps = 30/365 (8%)

Query: 143 NIASGTSEHTKVVI--DHGAVPIFVKLLYSPSDDVREQAVWALGNIA--GDSPRCRDLVL 198
            +    ++   + +          +++++S S + +  A      +     +P   +++ 
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDD 257
           + G +   +  L  +   ++   + W L+N   G          + A+P    L+ S  +
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGD 316
           +V   A WAL  ++  +      V++  + P L +     +  ++   A+  + N+  G 
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181

Query: 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIA 376
               +       L  L  LL       +  +ACW +S ++ G  ++IQ           A
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLF-VSDTDVLADACWALSYLSDGPNDKIQ-----------A 229

Query: 377 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 436
           VI+A +   LV LL + ++ +   A  A+ N  + G   Q + ++    ++ L  LL  P
Sbjct: 230 VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSP 288

Query: 437 DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK 496
              I       + NI     A+            Q + DA     + S+         ++
Sbjct: 289 KESIKKEACWTISNITAGNRAQI-----------QTVIDANIFPALISILQTAEFRTRKE 337

Query: 497 SVKLL 501
           +   +
Sbjct: 338 AAWAI 342

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  346 bits (888), Expect = e-112
 Identities = 72/448 (16%), Positives = 132/448 (29%), Gaps = 29/448 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 115

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 175

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 235

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E            
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA-------- 344

Query: 374 IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 433
             AV     +  +V LL         +A   +    +         L  QG I  L  LL
Sbjct: 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLL 403

Query: 434 VCPDPRIVTVCLEGLENILKVGEAEK------------NLGNTDVNVFTQMIDDAEGLEK 481
           V            G      V                  L     N    +I     +  
Sbjct: 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPL 461

Query: 482 IESLQTHDNAEIYEKSVKLLETYWLDDE 509
              L       I   +  +L     D E
Sbjct: 462 FVQLLYSPIENIQRVAAGVLCELAQDKE 489

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  226 bits (578), Expect = 1e-66
 Identities = 58/394 (14%), Positives = 133/394 (33%), Gaps = 31/394 (7%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + L  ED   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 123

Query: 228 NFCRGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +         +  L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 242

Query: 347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS 406
              WT+ N++    +Q                   ++G LV LL + + ++   AA  +S
Sbjct: 243 NCLWTLRNLSDAATKQEG--------------MEGLLGTLVQLLGSDDINVVTCAAGILS 288

Query: 407 NATSGGTHEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNT 464
           N T     +    +   G I+ L   ++       I    +  L ++           + 
Sbjct: 289 NLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS--------RHQ 339

Query: 465 DVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV 498
           +  +    +    GL  +  L    +     K+ 
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  204 bits (519), Expect = 3e-58
 Identities = 58/354 (16%), Positives = 112/354 (31%), Gaps = 29/354 (8%)

Query: 150 EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ 209
                 +   A+P   KLL      V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSY 269
           +     +   R    TL N    +        S  +PAL  ++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
           L         AV  AG   ++   L   +   L      +  +  G+      ++     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL 389
             L+N++     + +       +  + +                  A++EA  +  L   
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKP-----------AIVEAGGMQALGLH 232

Query: 390 LENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE 449
           L +    + +   W + N +   T +      ++G +  L  LL   D  +VT     L 
Sbjct: 233 LTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILS 288

Query: 450 NILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI--ESLQTHDNAEIYEKSVKLL 501
           N+       K            M+    G+E +    L+  D  +I E ++  L
Sbjct: 289 NLTCNNYKNK-----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  184 bits (469), Expect = 3e-51
 Identities = 60/375 (16%), Positives = 122/375 (32%), Gaps = 44/375 (11%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGL-HLTDPSQRLV 241

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP----ALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q +      LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 310 GNIVTGDDMQTQCVIEY---------------------QALPCLLNLLSGNYKKSIKKEA 348
                 + ++ + ++E                        +P  + LL  +  ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY-SPIENIQRVA 477

Query: 349 CWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 408
              +  + A ++E  + I                  PL  LL +    +   AA  +   
Sbjct: 478 AGVLCEL-AQDKEAAEAI-----------EAEGATAPLTELLHSRNEGVATYAAAVLFRM 525

Query: 409 TSGGTHEQIKFLVIQ 423
           +     +  K L ++
Sbjct: 526 SEDKPQDYKKRLSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 99.6 bits (248), Expect = 3e-22
 Identities = 32/229 (13%), Positives = 80/229 (34%), Gaps = 27/229 (11%)

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N +  A +     P L + L      V+  A   V  +   +  +   +   Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE 394
            +         +    T+ N+ + +RE +            A+ ++  I  LV +L +  
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLL-----------AIFKSGGIPALVKMLGSPV 111

Query: 395 FDIKKEAAWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVCPDPRIVTVCLEGLENILK 453
             +   A   + N       E  K  V   G ++ +  LL   + + + +  + L+ +  
Sbjct: 112 DSVLFYAITTLHNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169

Query: 454 VGEAEKNLGNTDVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLL 501
             +  K            +I  + G +  +  ++T+   ++   + ++L
Sbjct: 170 GNQESK-----------LIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 90.8 bits (225), Expect = 2e-19
 Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 28/188 (14%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG--------------------T 148
              +   G +PR V+ LL   +   Q   +   T                          
Sbjct: 387 HAPLREQGAIPRLVQ-LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR 445

Query: 149 SEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
             H ++VI     +P+FV+LLYSP ++++  A   L  +A D     + + ++G   PL 
Sbjct: 446 DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLT 504

Query: 208 AQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA 266
             L +    ++    A   L      KPQ    ++S  L   + L  +        A   
Sbjct: 505 ELLHSRNEGVA--TYAAAVLFRMSEDKPQDYKKRLSVEL--TSSLFRTEPMAWNETADLG 560

Query: 267 LSYLSDGT 274
           L   + G 
Sbjct: 561 LDIGAQGE 568

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 79.6 bits (196), Expect = 8e-16
 Identities = 34/185 (18%), Positives = 54/185 (29%), Gaps = 13/185 (7%)

Query: 89  VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT 148
           +   CT     L     +     +     +P FV+ LL      +Q  AA  L  +A   
Sbjct: 432 IVEGCTGALHILARDVHN--RIVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-D 487

Query: 149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA 208
            E  + +   GA     +LL+S ++ V   A   L  ++ D P+     LS      L  
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547

Query: 209 QLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALS 268
                   +    A   L    +G+P                  HS            + 
Sbjct: 548 --TEPMAWN--ETADLGLDIGAQGEPLG-----YRQDDPSYRSFHSGGYGQDALGMDPMM 598

Query: 269 YLSDG 273
               G
Sbjct: 599 EHEMG 603

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  337 bits (867), Expect = e-110
 Identities = 72/448 (16%), Positives = 132/448 (29%), Gaps = 29/448 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V  + + +      CT      LS  R      + +SG +P  V+ +L      + 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVK-MLGSPVDSVL 118

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           F A   L N+          V   G +   V LL   +          L  +A  +   +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            ++L+ GG   L+  +       +L   +  L          P    +  + AL   +  
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 255 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT 314
               ++ +  W L  LSD    +       G+   L + L     +V+  A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 315 GDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373
            +      V +   +  L+  +     ++ I + A   + ++T+ ++E            
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA-------- 347

Query: 374 IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL 433
             AV     +  +V LL         +A   +    +         L  QG I  L  LL
Sbjct: 348 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLL 406

Query: 434 VCPDPRIVTVCLEGLENILKVGEAEK------------NLGNTDVNVFTQMIDDAEGLEK 481
           V            G      V                  L     N    +I     +  
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLNTIPL 464

Query: 482 IESLQTHDNAEIYEKSVKLLETYWLDDE 509
              L       I   +  +L     D E
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKE 492

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  257 bits (659), Expect = 2e-79
 Identities = 82/443 (18%), Positives = 147/443 (33%), Gaps = 34/443 (7%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +   +   D  V  +      +L   E S     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
              A  L N+ S   E    +   G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V   GGL  ++A LN +  +  L   T  L     G  +     + S    AL +++ 
Sbjct: 137 MAVRLAGGLQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 314 TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS 373
              D  T+       L  L+ LL  +   ++   A   +SN+T  N +            
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKM--------- 302

Query: 374 IIAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTH--EQIKFLVIQGCIKPL 429
              V +   I  LV  +  A    DI + A  A+ + TS           + +   +  +
Sbjct: 303 --MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD 489
             LL  P    +     GL   L +  A               + +   + ++  L    
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANH-----------APLREQGAIPRLVQLLVRA 409

Query: 490 NAEIYEKSVKLLETYWLDDEDET 512
           + +   ++          +    
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRM 432

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  238 bits (608), Expect = 5e-72
 Identities = 74/454 (16%), Positives = 139/454 (30%), Gaps = 58/454 (12%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +P +V  + S    V +   T    L  + +      V  +G + + V  LL +   +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFL 160

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD-DVREQAVWALGNIAGDSPRC 193
                 L  +A G  E   +++  G     V ++ + +   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH 253
           +  ++  GG+  L   L   P   +++N  WTL N      +   + +   L  L  L+ 
Sbjct: 220 KPAIVEAGGMQALGLHLTD-PSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG 276

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI--PALRTVGN 311
           S+D  V+T A   LS L+         V + G    L   ++       I  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 312 IVTGDD---MQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQVIM 367
           + +      M    V  +  LP ++ LL   ++      +A   +    A        + 
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW--PLIKATVGLIRNLALCPANHAPL- 393

Query: 368 HVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG--------------- 412
                      E   I  LV LL  A  D ++  +   +                     
Sbjct: 394 ----------REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443

Query: 413 -----THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVN 467
                       +     I     LL  P   I  V    L  + +  EA          
Sbjct: 444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA---------- 493

Query: 468 VFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 501
              + I+       +  L    N  +   +  +L
Sbjct: 494 --AEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  221 bits (565), Expect = 9e-66
 Identities = 59/364 (16%), Positives = 116/364 (31%), Gaps = 32/364 (8%)

Query: 140 ALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS 199
           A+ N+ +         +   A+P   KLL      V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 200 QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV 259
              +  ++  +     +   R    TL N    +        S  +PAL  ++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
           L  A   L  L         AV  AG   ++   L   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIE 379
              ++       L+N++     + +       +  + +                  A++E
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKP-----------AIVE 225

Query: 380 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR 439
           A  +  L   L +    + +   W + N +   T +      ++G +  L  LL   D  
Sbjct: 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDIN 281

Query: 440 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL--QTHDNAEIYEKS 497
           +VT     L N+       K            M+    G+E +     +  D  +I E +
Sbjct: 282 VVTCAAGILSNLTCNNYKNK-----------MMVCQVGGIEALVRTVLRAGDREDITEPA 330

Query: 498 VKLL 501
           +  L
Sbjct: 331 ICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  203 bits (519), Expect = 4e-59
 Identities = 58/398 (14%), Positives = 138/398 (34%), Gaps = 32/398 (8%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
            +  + +  +P   + LL ++   +  +AA  +  ++   +    ++     V   V+ +
Sbjct: 10  DDAELATRAIPELTK-LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 68

Query: 169 YSPSD-DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
            + +D +        L N++         +   GG+  L+  L   P  S+L  A  TL 
Sbjct: 69  QNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG-SPVDSVLFYAITTLH 126

Query: 228 NFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
           N    +            L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK 346
              L   +   +   L+     V  +++        ++E   +  L   L+    + + +
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQ 245

Query: 347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS 406
              WT+ N++    +Q                   ++G LV LL + + ++   AA  +S
Sbjct: 246 NCLWTLRNLSDAATKQEG--------------MEGLLGTLVQLLGSDDINVVTCAAGILS 291

Query: 407 NATSGGTHEQIKFLVIQGCIKPLCDLLV--CPDPRIVTVCLEGLENILKVGEAEKNLGNT 464
           N T     +    +   G I+ L   ++       I    +  L ++           + 
Sbjct: 292 NLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT--------SRHQ 342

Query: 465 DVNVFTQMIDDAEGLEK-IESLQTHDNAEIYEKSVKLL 501
           +  +    +    GL   ++ L    +  + + +V L+
Sbjct: 343 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 380

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  190 bits (484), Expect = 4e-54
 Identities = 63/382 (16%), Positives = 120/382 (31%), Gaps = 45/382 (11%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 244

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +      +    Q        LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369
                 + ++ + ++E      L  L    + +                           
Sbjct: 422 TQQQFVEGVRMEEIVE-GCTGALHILARDVHNR--------------------------- 453

Query: 370 HAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 429
                I +   N I   V LL +   +I++ AA  +         E  + +  +G   PL
Sbjct: 454 -----IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPL 506

Query: 430 CDLLVCPDPRIVTVCLEGLENI 451
            +LL   +  + T     L  +
Sbjct: 507 TELLHSRNEGVATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  121 bits (306), Expect = 1e-29
 Identities = 49/287 (17%), Positives = 86/287 (29%), Gaps = 30/287 (10%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQL 133
           L  +V  + S+D  V          L +         V + G +   V  +LR  D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 134 QFEAAWALTNIASGTSEHTKV---VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              A  AL ++ S   E       V  H  +P+ VKLL+ PS     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
           P     +  QG +  L+  L  +      R  +   +     +     + V     AL  
Sbjct: 387 PANHAPLREQGAIPRLVQLLV-RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
           L     + +                     +      P   + L  P  ++   A   + 
Sbjct: 446 LARDVHNRI--------------------VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNIT 356
            +    +   + +    A   L  LL S N    +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELLHSRNEG--VATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  274 bits (703), Expect = 1e-89
 Identities = 93/259 (35%), Positives = 139/259 (53%), Gaps = 24/259 (9%)

Query: 244 ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
            LP +   ++S+D +    A    S +    N++IQAVI+AG  P L + L  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
            AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131

Query: 364 QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 423
           Q           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQI+ ++  
Sbjct: 132 Q-----------AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDA 179

Query: 424 GCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE 483
           G +  L  LL  P+ +I+   L  L NI   G  +K           Q + +A  LEK+E
Sbjct: 180 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-----------QAVKEAGALEKLE 228

Query: 484 SLQTHDNAEIYEKSVKLLE 502
            LQ+H+N +I +++ + LE
Sbjct: 229 QLQSHENEKIQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  272 bits (697), Expect = 1e-88
 Identities = 84/241 (34%), Positives = 133/241 (55%), Gaps = 4/241 (1%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           LP M   + S+D   Q   T +F ++LS + +  I+ VI +G +P  V+ L   +  Q+ 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQIL 71

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
            EA WAL+NIASG +E  + VID GA+P  V+LL SP++ + ++A+WAL NIA       
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV-SPALPALAHLIH 253
             V+  G L  L+  L+  P   +L+ A W LSN   G  +     + + ALPAL  L+ 
Sbjct: 132 QAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 190

Query: 254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           S ++++L +A WALS ++ G N++ QAV EAG   +L +   H +  +   A   +  + 
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250

Query: 314 T 314
           +
Sbjct: 251 S 251

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  251 bits (643), Expect = 4e-81
 Identities = 77/212 (36%), Positives = 112/212 (52%), Gaps = 13/212 (6%)

Query: 240 QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSP 299
                LP +   ++S D + L  A   LS ++ G N++IQAVI+AG  P L + L  P+ 
Sbjct: 9   HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE 68

Query: 300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN 359
            +L  AL  + NI +G + Q Q VI+  ALP L+ LLS +  + I +EA W +SNI +G 
Sbjct: 69  QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGG 127

Query: 360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 419
            EQIQ           AVI+A  +  LV LL +    I +EA WA+SN  SGG +EQ + 
Sbjct: 128 NEQIQ-----------AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQA 175

Query: 420 LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 451
           +   G ++ L  L    + +I     E LE +
Sbjct: 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  182 bits (463), Expect = 2e-54
 Identities = 67/206 (32%), Positives = 105/206 (50%), Gaps = 3/206 (1%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
                   +P+ V+ L   D  Q    A   L+ IASG +E  + VID GA+P  V+LL 
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF 229
           SP++ + ++A+WAL NIA         V+  G L  L+  L+  P   +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNI 123

Query: 230 CRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP 288
             G  +     +   ALPAL  L+ S ++++L +A WALS ++ G N++ QAV EAG   
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 289 RLAEFLMHPSPSVLIPALRTVGNIVT 314
           +L +   H +  +   A   +  + +
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  162 bits (413), Expect = 3e-47
 Identities = 77/256 (30%), Positives = 110/256 (42%), Gaps = 54/256 (21%)

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                 +P  V+ L SP     + A+  L  IA         V+  G             
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG------------- 54

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT 274
                                        ALPAL  L+ S ++++L +A WALS ++ G 
Sbjct: 55  -----------------------------ALPALVQLLSSPNEQILQEALWALSNIASGG 85

Query: 275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
           N++IQAVI+AG  P L + L  P+  +L  AL  + NI +G + Q Q VI+  ALP L+ 
Sbjct: 86  NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145

Query: 335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE 394
           LLS +  + I +EA W +SNI +G  EQ Q           AV EA  +  L  L  +  
Sbjct: 146 LLS-SPNEQILQEALWALSNIASGGNEQKQ-----------AVKEAGALEKLEQLQSHEN 193

Query: 395 FDIKKEAAWAISNATS 410
             I+KEA  A+    S
Sbjct: 194 EKIQKEAQEALEKLQS 209

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  251 bits (641), Expect = 1e-74
 Identities = 73/445 (16%), Positives = 137/445 (30%), Gaps = 36/445 (8%)

Query: 61  NDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPR 120
           +DV+     +  +            D   QY  T   R      R+    E +  G+   
Sbjct: 55  DDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIP 109

Query: 121 FVEFLLREDYP-QLQFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYSPSDDVREQ 178
             +F        Q   E +  L +       +     +   A+P   KLL      V  +
Sbjct: 110 STQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNK 169

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   +  ++        ++ S   +  ++  +     +   R  + TL N    +     
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
              S  +PAL +++ S  D VL  A   L  L         AV  AG   ++   L   +
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 289

Query: 299 PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG 358
              L      +  +  G+      ++       L+N++   Y           V  + + 
Sbjct: 290 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR-TYTYEKLLWTTSRVLKVLSV 348

Query: 359 NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIK 418
                            A++EA  +  L   L +    + +   W + N +   T +   
Sbjct: 349 CSSNKP-----------AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--- 394

Query: 419 FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG 478
              ++G +  L  LL   D  +VT     L N+       K            M+    G
Sbjct: 395 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK-----------MMVCQVGG 442

Query: 479 LEKIESL--QTHDNAEIYEKSVKLL 501
           +E +     +  D  +I E ++  L
Sbjct: 443 IEALVRTVLRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  218 bits (557), Expect = 8e-63
 Identities = 72/460 (15%), Positives = 139/460 (30%), Gaps = 53/460 (11%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
              +V  + +         T++  K+LS+  S     ++ +G +       L +   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRLV 377

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
               W L N++      TK     G +   V+LL S   +V   A   L N+  ++ + +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 195 DLVLSQGGLVPLLAQL-NGQPKLSMLRNATWTLSNFCRGKPQPPFDQV----SPALPALA 249
            +V   GG+  L+  +     +  +   A   L +           Q        LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H      L  A   L             + E G  PRL + L+              
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369
                 + ++ + ++                      EAC    +I A +     VI   
Sbjct: 555 TQQQFVEGVRMEEIV----------------------EACTGALHILARDIHNRIVI--- 589

Query: 370 HAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 429
                      N I   V LL +   +I++ AA  +         E  + +  +G   PL
Sbjct: 590 --------RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPL 639

Query: 430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD 489
            +LL   +  + T     L  + +    +     +              L + E +  ++
Sbjct: 640 TELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELT--------SSLFRTEPMTWNE 691

Query: 490 NAEIYEKSVKLLETYWLDDEDETMPPGDASQPGFGFGGNG 529
             ++        E      +D +     +   G    G  
Sbjct: 692 TGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMD 731

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  231 bits (591), Expect = 1e-71
 Identities = 55/350 (15%), Positives = 107/350 (30%), Gaps = 45/350 (12%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
            +          P +++              +          A   L  + S   EH   
Sbjct: 20  CETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDEEHRHA 68

Query: 155 VIDHGAVPIFVKLLYSPSD-----------DVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           + + G +    +LL    +            +R  A  AL N+       +  + S  G 
Sbjct: 69  MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHL-IHSNDDEVL 260
           +  L          + +     L N            +    ++ AL    +    +  L
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 261 TDACWALSYLS-DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP-------ALRTVGNI 312
                AL  LS   T +K       G    L   L + S +  +         LR V ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF 372
           +  ++   Q + E   L  LL  L  ++  +I   AC T+ N++A N +  +        
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQE-------- 299

Query: 373 SIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI 422
              A+ +   +  L  L+ +    I   +A A+ N  +    +     ++
Sbjct: 300 ---ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIM 346

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  113 bits (284), Expect = 9e-28
 Identities = 46/223 (20%), Positives = 76/223 (34%), Gaps = 14/223 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +VA + S    +Q    +  R L         + +   G V   +E  L        
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 135 FEAAWALTNIASGTSE-HTKVVIDHGAVPIFVKLLYSPSDD----VREQAVWALGNIAG- 188
                AL N+++  +E    +    GA+   V  L   S      + E     L N++  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 189 --DSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPA 244
              +   R ++     L  LL  L     L+++ NA  TL N     P  Q     +  A
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 306

Query: 245 LPALAHLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAG 285
           +  L +LIHS    +   +  AL  L        K   ++  G
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPG 349

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 98.4 bits (245), Expect = 1e-22
 Identities = 38/306 (12%), Positives = 87/306 (28%), Gaps = 51/306 (16%)

Query: 216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
           L  +R    T   +             P +    + + +  +  +  A   L  LS    
Sbjct: 13  LEQIRAYCETCWEWQEAH--------EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE 64

Query: 276 DKIQAVIEAGVFPRLAEFL-----------MHPSPSVLIPALRTVGNIVTGDDMQTQCVI 324
            +  A+ E G    +AE L            H S ++   A   + N+  GD      + 
Sbjct: 65  HR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 325 EYQ-ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANII 383
             +  +  L+  L     + +++     + N++       +            + E   +
Sbjct: 124 SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKK----------TLREVGSV 172

Query: 384 GPLVALLENAEF-DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP---- 438
             L+      +     K    A+ N ++  T  +     + G +  L   L         
Sbjct: 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 232

Query: 439 ---RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE 495
                    L  + +++   E  +           Q++ +   L+ +       +  I  
Sbjct: 233 AIIESGGGILRNVSSLIATNEDHR-----------QILRENNCLQTLLQHLKSHSLTIVS 281

Query: 496 KSVKLL 501
            +   L
Sbjct: 282 NACGTL 287

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  220 bits (560), Expect = 7e-66
 Identities = 60/387 (15%), Positives = 125/387 (32%), Gaps = 25/387 (6%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V+  L     + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQ-YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + ++ ALP LA  +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYK 341
             +G+   L  ++ +   +           +    ++  +   E       L   + N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 342 KSIKKEACWTVSNITAGNREQIQVIMH--VHAFSIIAVIEANIIGPLVALLENAEFDIKK 399
                  C++  +    N      +     +      +  ++ I   + L+  ++ D   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 400 EAA-WAISNATSG----GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454
           EA   A+ N T+      +       + +  +  +  LL   +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 455 GEAEKNLGNTDVNVFTQMIDDAEGLEK 481
               + +GN      T+++    G   
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTS 388

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  105 bits (262), Expect = 2e-24
 Identities = 46/319 (14%), Positives = 89/319 (27%), Gaps = 39/319 (12%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL------ 168
           SG              P++ F A   L N++S  +    +    G +   +  +      
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQPKLSMLR 220
               D   E  +  L N++            Q       A            +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRG-KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDK-- 277
           N    L       K              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 278 ---IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKSIKKE-----ACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL 389
           LL+ +   +   E     AC+TV N+ A   +  +               ++++  ++ L
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAK-----------QYFSSSMLNNIINL 427

Query: 390 LENAEFD-IKKEAAWAISN 407
             ++      + A   +S+
Sbjct: 428 CRSSASPKAAEAARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 83.7 bits (206), Expect = 2e-17
 Identities = 37/225 (16%), Positives = 77/225 (34%), Gaps = 10/225 (4%)

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVL 302
             +P     + S D++      + + +         Q V + G   +L + L  P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ 362
             A   + N+V               +   ++LL       I+K+    + N+++ +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121

Query: 363 IQVI---MHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 419
            ++I   + V A  +I        G      E  + ++   A   + N +S     +   
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD-AGRQTM 180

Query: 420 LVIQGCIKPLCDLL------VCPDPRIVTVCLEGLENILKVGEAE 458
               G I  L   +         D + V  C+  L N+    +AE
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE 225

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 78.7 bits (193), Expect = 9e-16
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 35/326 (10%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG 116
             LA+ V  P +     N  +        D  V +  T   R L S   +        SG
Sbjct: 130 PVLADRVIIPFSGWCDGNSNMSRE---VVDPEVFFNATGCLRNL-SSADAGRQTMRNYSG 185

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++   +   ++      + +       +    +   ++  +       +    + +    
Sbjct: 186 LIDSLMA-YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL-EYNARNAYTE 243

Query: 177 EQAVWALGNIAGD---------------SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           + +     N +                 +P+    +     +   L  +    K + L  
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 222 ATWTLSNFCRGKPQPPFD------QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN 275
               L N    K                 LP +A L+ S + +V+      LS +S   +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RH 361

Query: 276 DKIQAVIEAGVFPRLAEFL------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL 329
             +  V+   VFP +   L         S  +L  A  TV N++       +       L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 330 PCLLNLLSGNYKKSIKKEACWTVSNI 355
             ++NL   +      + A   +S++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDM 447

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 67.2 bits (163), Expect = 4e-12
 Identities = 30/285 (10%), Positives = 72/285 (25%), Gaps = 31/285 (10%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM 318
              A  AL  L   +                   L    +  +       + N+ + D++
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 319 QTQCVIEYQALPCLLNLLSGNYK---------------KSIKKEACWTVSNITAGNREQI 363
           +    +   ALP L + +   +                  +   A   + N+++ +  + 
Sbjct: 121 KE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 364 QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ 423
            +              + +I  L+A ++N     + +     +               + 
Sbjct: 179 TM-----------RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP 227

Query: 424 GCIKPLCDLLVCPDPRI-VTVCLEGLENILKVGEAEKNLGNTDVN 467
              + L             T C     + +     +  L   + N
Sbjct: 228 TRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN 272

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 66.8 bits (162), Expect = 6e-12
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 9/130 (6%)

Query: 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS 170
             ++   +P+    LL+     +    A  L+N++         V+ +   P   +LL S
Sbjct: 326 IGLKEKGLPQIAR-LLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTS 382

Query: 171 ------PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATW 224
                  S+D+   A + + N+    P+      S   L  ++              A  
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442

Query: 225 TLSNFCRGKP 234
            LS+    K 
Sbjct: 443 LLSDMWSSKE 452

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  203 bits (517), Expect = 1e-58
 Identities = 74/463 (15%), Positives = 148/463 (31%), Gaps = 68/463 (14%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L S+ +  P     R   +P  +  +L      ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIA-MLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            +P+ V LL  P  +V   A  AL NI+ G     +  + +  G+  L+  L     + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI------------------HSNDDEVL 260
               T TL N          + V  AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV----------- 309
           T+    L  +S   ++  + + E         F++           + V           
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 310 ---------------------GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEA 348
                                 N  T      + + + + +   ++LL  +   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 349 CWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA 408
              + N+ AG     + I         A+ +   +  +  LL N    + K A+ A+ N 
Sbjct: 330 AGAIQNLCAGRWTYGRYIRS-------ALRQEKALSAIADLLTNEHERVVKAASGALRNL 382

Query: 409 TSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNV 468
                  + K L+ +  I  L   L            E  + ++ +      +   ++  
Sbjct: 383 AV---DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE--DTVISILNTINEVIAENLE- 436

Query: 469 FTQMIDDAEGLEKIESLQTHDNAE--IYEKSVKLLETYWLDDE 509
             + + + +G+EK+  +    N        +  +L+T W   E
Sbjct: 437 AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  115 bits (287), Expect = 3e-27
 Identities = 60/401 (14%), Positives = 128/401 (31%), Gaps = 48/401 (11%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP--ALPAL 248
            + +  V    G+  L+  L+  PK  +   A   L N   G+ Q     +     +PAL
Sbjct: 80  DKVKTDVRKLKGIPVLVGLLD-HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 249 AHLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP---------- 297
             L+  + D ++       L  LS   + K++ V  A     L + ++ P          
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196

Query: 298 --------SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL-PCLLNLLS-----GNYKKS 343
                     SVL      + N+ +      + + E   L   L+ ++       +    
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256

Query: 344 IKKEACWTVSNITAGNREQIQVIMHV--------------HAFSIIAVIEANIIGPLVAL 389
           + +     + N++     +I                     A     + +  ++   ++L
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316

Query: 390 LENAE-FDIKKEAAWAISNATSGGTHEQI---KFLVIQGCIKPLCDLLVCPDPRIVTVCL 445
           L+ ++   I + +A AI N  +G           L  +  +  + DLL     R+V    
Sbjct: 317 LKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAAS 376

Query: 446 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ 486
             L N+      ++ +G   +    + +   +        +
Sbjct: 377 GALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE 417

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  101 bits (251), Expect = 9e-23
 Identities = 58/320 (18%), Positives = 109/320 (34%), Gaps = 38/320 (11%)

Query: 214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG 273
           P     R +  +L +  +G P PP  +  P LP +  ++    D V ++A   L +L   
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR 78

Query: 274 TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQC-VIEYQALPCL 332
            +     V +    P L   L HP   V + A   + NI  G D   +  +     +P L
Sbjct: 79  NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN 392
           + LL       + +    T+ N+++ +  +++++ H      +  +   +I P       
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA-----LHALTDEVIIPHSGWERE 193

Query: 393 AEFDIKKEA----------AWAISNATSGGTHEQIKFLVIQGCIKPLCDLL------VCP 436
              D K             A  + N +S  +  + K     G +  L  ++         
Sbjct: 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDS 253

Query: 437 DPRIVTVCLEGLENILKVGEAEK--------------NLGNTDVNVFTQMIDDAEGLEK- 481
           D ++V  C+  L N+      E               N   T      +++   E +   
Sbjct: 254 DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIY 313

Query: 482 IESLQTHDNAEIYEKSVKLL 501
           I  L+      I E S   +
Sbjct: 314 ISLLKESKTPAILEASAGAI 333

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 82.7 bits (203), Expect = 8e-17
 Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 41/234 (17%)

Query: 72  LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYP 131
           L NL   V            E             +   E + +  VV  ++  L     P
Sbjct: 265 LRNLSYQVHREIPQAER-YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323

Query: 132 QLQFEAAWALTNIASGTSEHT----KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA 187
            +   +A A+ N+ +G   +       +    A+     LL +  + V + A  AL N+A
Sbjct: 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383

Query: 188 GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPA 247
            D+      ++ +  +  L+  L G                                   
Sbjct: 384 VDARNKE--LIGKHAIPNLVKNLPG----------------------------------G 407

Query: 248 LAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
             +   +  ++ +      ++ +     +  + + E     +L       + S 
Sbjct: 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 82.3 bits (202), Expect = 9e-17
 Identities = 51/335 (15%), Positives = 109/335 (32%), Gaps = 68/335 (20%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------------- 129
           + D  +    T     L ++     I+  I    +    + ++                 
Sbjct: 145 ARDMDLTEVIT---GTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201

Query: 130 ---YPQLQFEAAWALTNIASGTSEHTKVVIDH-GAVPIFVKLLYS------PSDDVREQA 179
              +  +    A  L N++S  SE  + + +  G V   + ++ +          + E  
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261

Query: 180 VWALGNIAGD-------------------------SPRCRDLVLSQGGLVPLLAQLNGQP 214
           V  L N++                             R  +L+     +   ++ L    
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSP-----ALPALAHLIHSNDDEVLTDACWALSY 269
             ++L  +   + N C G+        S      AL A+A L+ +  + V+  A  AL  
Sbjct: 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381

Query: 270 LSDGTNDKIQAVIEAGVFPRLAEFL--------MHPSPSVLIPALRTVGNIVTGDDMQTQ 321
           L+   + + + +I     P L + L         + S   +I  L T+  ++  +    +
Sbjct: 382 LA--VDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAK 439

Query: 322 CVIEYQALPCLLNLL-SGNYKKSIKKEACWTVSNI 355
            + E Q +  L+ +  SGN  +   + A   +  I
Sbjct: 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 48.8 bits (115), Expect = 3e-06
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 12/126 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-------R 127
           L  +   + +    V    +   R L         +E+I    +P  V+ L         
Sbjct: 357 LSAIADLLTNEHERVVKAASGALRNLA---VDARNKELIGKHAIPNLVKNLPGGQQNSSW 413

Query: 128 EDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ--AVWALGN 185
                        +  + +   E  K + +   +   V +  S +   +E   A   L  
Sbjct: 414 NFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQT 473

Query: 186 IAGDSP 191
           I G   
Sbjct: 474 IWGYKE 479

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  197 bits (501), Expect = 3e-57
 Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 37/309 (11%)

Query: 126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDD 174
           +          A   L  + S   EH   + + G +    +LL              S  
Sbjct: 157 MPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSIT 215

Query: 175 VREQAVWALGNIA-GDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
           +R  A  AL N+  GD      L   +G +  L+AQL       + +     L N     
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRA 274

Query: 234 PQPPFDQV--SPALPALAHL-IHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVFPR 289
                  +    ++ AL    +    +  L     AL  LS   T +K       G    
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334

Query: 290 LAEFLMHPSPSVLIP-------ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342
           L   L + S +  +         LR V +++  ++   Q + E   L  LL  L  ++  
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK-SHSL 393

Query: 343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAA 402
           +I   AC T+ N++A N +  +           A+ +   +  L  L+ +    I   +A
Sbjct: 394 TIVSNACGTLWNLSARNPKDQE-----------ALWDMGAVSMLKNLIHSKHKMIAMGSA 442

Query: 403 WAISNATSG 411
            A+ N  + 
Sbjct: 443 AALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  180 bits (457), Expect = 7e-51
 Identities = 71/452 (15%), Positives = 150/452 (33%), Gaps = 76/452 (16%)

Query: 57  QPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR-S 115
              ++         K+E +  +++ + ++D   + + +   R LL++  S      +R S
Sbjct: 16  PRGSHMRLTSHLGTKVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQS 69

Query: 116 GVVPRFVEFLLRED-----------YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF 164
           G +P  ++ L   D             + +  A+ AL NI     +  +   +   + + 
Sbjct: 70  GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLL 129

Query: 165 VKL------------------------LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
            ++                        + +P +     AV  L  ++ D    R  +   
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNEL 188

Query: 201 GGLVPLLAQL----------NGQPKLSMLRNATWTLSNFCRGKP--QPPFDQVSPALPAL 248
           GGL  +   L          N    +++ R A   L+N   G    +     +   + AL
Sbjct: 189 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRAL 248

Query: 249 AHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPS-PSVLIPAL 306
              + S  +++       L  LS   +   +  + E G    L E  +     S L   L
Sbjct: 249 VAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVL 308

Query: 307 RTVGNI-VTGDDMQTQCVIEYQALPCLLNLLSGNYKKS---IKKEACWTVSNIT---AGN 359
             + N+     + +        AL  L+  L+   + +   I +     + N++   A N
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368

Query: 360 REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKF 419
            +  Q++            E N +  L+  L++    I   A   + N ++    +  + 
Sbjct: 369 EDHRQIL-----------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEA 416

Query: 420 LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 451
           L   G +  L +L+      I       L N+
Sbjct: 417 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  124 bits (312), Expect = 6e-31
 Identities = 57/404 (14%), Positives = 123/404 (30%), Gaps = 64/404 (15%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP------------S 172
           LL       + + +  L  + S + +    +   G +P+ ++LL+              S
Sbjct: 37  LLSMLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGS 95

Query: 173 DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG 232
            + R +A  AL NI    P        +  ++ LL Q+                   C  
Sbjct: 96  KEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIR-------------AYCETCWE 141

Query: 233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
             +       P +    + + +  +  +  A   L  LS     +  A+ E G    +AE
Sbjct: 142 WQE----AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAE 196

Query: 293 FL-----------MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ-ALPCLLNLLSGNY 340
            L            H S ++   A   + N+  GD      +   +  +  L+  L    
Sbjct: 197 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256

Query: 341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFD-IKK 399
           +  +++     + N++       +            + E   +  L+      + +   K
Sbjct: 257 ED-LQQVIASVLRNLSWRADVNSKK----------TLREVGSVKALMECALEVKKESTLK 305

Query: 400 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK 459
               A+ N ++  T  +     + G +  L   L           +E    IL      +
Sbjct: 306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL------R 359

Query: 460 NLGN--TDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLL 501
           N+ +         Q++ +   L+ +       +  I   +   L
Sbjct: 360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  100 bits (250), Expect = 7e-23
 Identities = 20/158 (12%), Positives = 50/158 (31%), Gaps = 7/158 (4%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED---YPQLQFEAAWA 140
                      +    L +       +     G +   V  L          +       
Sbjct: 298 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 357

Query: 141 LTNIAS---GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLV 197
           L N++S      +H +++ ++  +   ++ L S S  +   A   L N++  +P+ ++ +
Sbjct: 358 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417

Query: 198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ 235
              G +  L   ++      +   +   L N    +P 
Sbjct: 418 WDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRPA 454

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  165 bits (419), Expect = 4e-47
 Identities = 33/236 (13%), Positives = 72/236 (30%), Gaps = 3/236 (1%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           S  +P       +    Q +  A   L ++              G   +  + L + +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 175 VREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP 234
           +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A + +S   R + 
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 235 QPPFD-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                         L   +     ++   + + L  L  G  +    +   G+  +L   
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEAC 349
           +           L  + ++VT      +     +    L  LL    +   + E  
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  137 bits (345), Expect = 1e-36
 Identities = 50/314 (15%), Positives = 107/314 (34%), Gaps = 33/314 (10%)

Query: 202 GLVPLLAQLNGQPK-LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVL 260
           GLVP  + + GQ   +  +++    LS               P  P       + D +  
Sbjct: 12  GLVPRGSHMRGQRGEVEQMKSCLRVLSQ--------------PMPPTAGEAEQAADQQER 57

Query: 261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT 320
             A   L+ L +  ++       +G+   +  +L   +  +   A + +G          
Sbjct: 58  EGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ 117

Query: 321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA 380
           + V+   AL  LL LL  +   +++ +A + +S +       +              +  
Sbjct: 118 EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL-----------QFLRL 166

Query: 381 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI 440
           +    L+  ++     +K ++A+ + N   G   E    L   G ++ L  L+       
Sbjct: 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVALVRTEHSPF 225

Query: 441 VTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVK 499
               L  L +++                  +++       + + LQ H+   E  E   K
Sbjct: 226 HEHVLGALCSLVTDFPQGVRECREPELGLEELLR-----HRCQLLQQHEEYQEELEFCEK 280

Query: 500 LLETYWLDDEDETM 513
           LL+T +    D++M
Sbjct: 281 LLQTCFSSPADDSM 294

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.9 bits (225), Expect = 2e-20
 Identities = 31/237 (13%), Positives = 79/237 (33%), Gaps = 5/237 (2%)

Query: 30  EDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGV-WSNDSG 88
              M        + + Q++R   L+    L  +++      +L  + ++V     +  +G
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 89  VQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
           +++                 I E+V+  G + + +  L R+    ++ +A +A++ +   
Sbjct: 98  LRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 155

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL 207
                   +      + ++ +      ++ ++ + L N+    P  +  + S  G+V  L
Sbjct: 156 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-GMVQQL 214

Query: 208 AQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC 264
             L          +    L +     PQ   +   P L     L H        +  
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEY 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  150 bits (380), Expect = 7e-39
 Identities = 58/408 (14%), Positives = 120/408 (29%), Gaps = 42/408 (10%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH-TKVV 155
             ++         +       +  +++  L     + +     A+T + +G  +   +VV
Sbjct: 228 LARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVV 286

Query: 156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK 215
              G + + + +  +  +  +  A   L   +         +  QG  V +L +L     
Sbjct: 287 AREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VDILKRLYHSKN 343

Query: 216 LSMLRNATWTLSNFC-----RGKPQPPFDQVSPALPALAH---LIHSNDDEVLTDACWAL 267
             +   A   L             +P  D  +  L        +    D ++   A   L
Sbjct: 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGL 403

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
           +YL+     K + + +      L +     + S L   + T  N+    + Q        
Sbjct: 404 AYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM------ 457

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV 387
            LP ++ L     +   ++     V  I                  I  +    I   L 
Sbjct: 458 -LPEMIELAKFAKQHIPEEHELDDVDFINK---------------RITVLANEGITTALC 501

Query: 388 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEG 447
           AL +    + ++  A  ++     G  E    +V +G +K L  + +    +      + 
Sbjct: 502 ALAKTESHNSQELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQA 559

Query: 448 LENILKVGEAEKNLGNTDVNV-----FTQMIDDAEGLEKIESLQTHDN 490
           L  I      E +                +  D   LE  ESL    N
Sbjct: 560 LARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTN 607

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  146 bits (369), Expect = 2e-37
 Identities = 61/476 (12%), Positives = 130/476 (27%), Gaps = 99/476 (20%)

Query: 65  APGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEF 124
             G A KL             D  ++          L+++     + +     +   ++ 
Sbjct: 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMD- 428

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHT-------------------------------- 152
           L R       +       N+ +   +                                  
Sbjct: 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI 488

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
            V+ + G       L  + S + +E     L  + G     R  V+ +GG+  LL     
Sbjct: 489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALE 547

Query: 213 QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSP--ALPALAHLIHSNDDEVLT-DACWALS 268
             +    R+AT  L+       P+  F        +  L +L+  +   +   ++  AL+
Sbjct: 548 GTEKGK-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALT 606

Query: 269 YLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQA 328
            L+       Q +I+     ++  +LM     +                           
Sbjct: 607 NLASMNESVRQRIIKEQGVSKIEYYLMEDHLYL--------------------------- 639

Query: 329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA 388
                            + A   + N+                         + +  L  
Sbjct: 640 ----------------TRAAAQCLCNLVMSEDVIKMF-----------EGNNDRVKFLAL 672

Query: 389 LLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGL 448
           L E+ + +     A A++  TS       K L I   +  L  L+  P P +    +  +
Sbjct: 673 LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII 732

Query: 449 ENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY 504
            N++    A + +        T +++   GL ++         E+  + +   E Y
Sbjct: 733 LNMI---NAGEEIAKKLFE--TDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 92.2 bits (228), Expect = 1e-19
 Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 3/210 (1%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              +   +E       L S+  +  + + I        +E+ L ED+  L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASM--NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL 203
           +            ++  V     L     ++       AL  I   S +C + +L+    
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEVLTD 262
           + +L  L   P  ++       + N      +          +  L+ L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 263 ACWALSYLSDGTNDKIQAVIEAGVFPRLAE 292
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  140 bits (354), Expect = 1e-38
 Identities = 39/214 (18%), Positives = 66/214 (30%), Gaps = 20/214 (9%)

Query: 118 VPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           + R V  L  +   P     AA  + +     SE  K V     +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
                AL N+  +    +  V    G+  LL  L     L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 237 PFDQVSPALPALAHLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 280
               ++ AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 281 VIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIV 313
           +    G+   L  ++            +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 90.0 bits (223), Expect = 1e-20
 Identities = 36/222 (16%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 240 QVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
            +   L     ++ ++      ++ A   + +     ++  + V +     +L + L   
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
           +  V       + N+V  D+     V E   +P LL +L        KK+    + N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 358 GNREQIQVI---MHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH 414
            ++ +  +I   +     +II        G         +FDI       + N +S G  
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGAD 184

Query: 415 EQIKFLVIQGCIKPLCDLL------VCPDPRIVTVCLEGLEN 450
            +       G I  L   +        PD +    C+  L N
Sbjct: 185 GRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 62.3 bits (151), Expect = 4e-11
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 25/178 (14%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  ++  +   +  VQ       R  L  E +    EV     VPR ++ L +    + +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETK 112

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSP----------------SDDVREQ 178
            +    L N++S   +  K ++   A+    + +  P                  D+   
Sbjct: 113 KQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL------NGQPKLSMLRNATWTLSNFC 230
               L N++      R  +    GL+  L         + QP      N    L N  
Sbjct: 171 VTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 89.8 bits (222), Expect = 3e-20
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 21/197 (10%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           ++ +    L + +   L  E A A   +A    E  K +I     P+         +  +
Sbjct: 70  MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTK 124

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
               +AL  IA  +P     ++     + +L+  N + KL+ L        NF     + 
Sbjct: 125 INVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGEN 174

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
            F  V+P LP + +L+H  D+ V   A  AL +L+   +   + VI      +  E L  
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND 228

Query: 297 PSPSVLIPALRTVGNIV 313
            S  V       +  ++
Sbjct: 229 TSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 32/209 (15%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVR 176
           V+ + +E LL +D   +   A   +  IA    +  + ++      +F  L  S +  + 
Sbjct: 33  VLKKLIE-LLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 177 EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP 236
           ++   A G +A + P           ++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 237 PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH 296
               ++  +     ++ S + E    A   +  + + +   +   +     PR+   L  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 297 PSPSVLIPALRTVGNIVTGDDMQTQCVIE 325
               V   A+  + ++ T +D   + VI+
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVIK 221

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 28/293 (9%), Positives = 77/293 (26%), Gaps = 80/293 (27%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +   ++LL      V + A+  +  IA       + +L +     L + L     + + 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKK-----LFSLLKKSEAIPLT 87

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
           +          + KP    + V   +P L       D++   +  +AL  ++      + 
Sbjct: 88  QEIAKAFGQMAKEKP----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
           +++           L   +                                         
Sbjct: 144 SIVRD-----FMSMLSSKNRED-------------------------------------- 160

Query: 340 YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKK 399
                K  A   +  +   + + +                   +  ++ LL + +  ++ 
Sbjct: 161 -----KLTALNFIEAMGENSFKYV----------------NPFLPRIINLLHDGDEIVRA 199

Query: 400 EAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 452
            A  A+ +  +           ++  +    + L      +     EG+  +L
Sbjct: 200 SAVEALVHLATLNDK-------LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 73.7 bits (181), Expect = 1e-14
 Identities = 41/319 (12%), Positives = 85/319 (26%), Gaps = 68/319 (21%)

Query: 100 LLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG 159
           L +  +    +E+ R          LL +     +  +A  L                  
Sbjct: 16  LYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG-----------GQD 54

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
           AV + ++     +   R+   + LG I     +C D V +      L           + 
Sbjct: 55  AVRLAIEFCSDKNYIRRDIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVR 108

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A  + +  C+  P          +             V     +A+S ++D       
Sbjct: 109 ATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157

Query: 280 AVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN 339
                   P L   L  P+  V   A   +      +              C + +L   
Sbjct: 158 ----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK 204

Query: 340 YKKSIKKEACWTVSNITAGNREQIQVIMH-----------VHAFSIIAVIEANIIGPLVA 388
             + ++ EA   +S     ++  + V+             + A   +       +  L  
Sbjct: 205 N-EEVRIEAIIGLSYR--KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTL--LPVLDT 259

Query: 389 LLENAE-FDIKKEAAWAIS 406
           +L   +  +I   A   + 
Sbjct: 260 MLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 28/278 (10%), Positives = 70/278 (25%), Gaps = 63/278 (22%)

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
             + +A    G                      L +L          ++   L    RG 
Sbjct: 5   YQKRKASKEYGLYNQCKKLN----------DDELFRLLDDHNSLKRISSARVLQL--RGG 52

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF 293
                     A+          +        + L  +        +   +          
Sbjct: 53  QD--------AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVS 353
           L   S  V   A+ +       + + +  ++E         + + +   ++++   + +S
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVE------QSQITAFDKSTNVRRATAFAIS 153

Query: 354 NITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT 413
            I   ++  I                      L+ LL++   D++  AA+AI+      +
Sbjct: 154 VI--NDKATIP--------------------LLINLLKDPNGDVRNWAAFAININKYDNS 191

Query: 414 HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 451
                            ++L   +  +    + GL   
Sbjct: 192 D----------IRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.3 bits (179), Expect = 1e-13
 Identities = 68/443 (15%), Positives = 137/443 (30%), Gaps = 123/443 (27%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS---GTSEH 151
           +   +L     S          +V +FVE +LR +Y        + ++ I +     S  
Sbjct: 62  SGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMM 108

Query: 152 TKVVID-----HGAVPIFVKLLYSPSDDV-REQAVWALGN-IAGDSPRCRDLVL-SQGG- 202
           T++ I+     +    +F K       +V R Q    L   +    P  +++++    G 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPA-KNVLIDGVLGS 161

Query: 203 ----LVPLLAQLNGQPKLSMLRNATW-TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
               +   +   + + +  M     W  L N C   P    + V   L  L + I  N  
Sbjct: 162 GKTWVALDVCL-SYKVQCKMDFKIFWLNLKN-CN-SP----ETVLEMLQKLLYQIDPNWT 214

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-PSVLIPALRTVGNIVTGD 316
                        SD +   I+  I + +   L   L      + L+        ++   
Sbjct: 215 S-----------RSDHS-SNIKLRIHS-IQAELRRLLKSKPYENCLL--------VL--L 251

Query: 317 DMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIA 376
           ++Q         L C + L +    K +          ++A     I +  H    +   
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRF--KQV-------TDFLSAATTTHISLDHHSMTLT--- 299

Query: 377 VIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP 436
                +   L+  L+    D+ +E                                    
Sbjct: 300 --PDEVKSLLLKYLDCRPQDLPREV----------------------------LTT---- 325

Query: 437 DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA-EGLEKIESLQTHDNAEIYE 495
           +PR +++  E + + L   +   N  + + +  T +I+ +   LE  E  +  D   ++ 
Sbjct: 326 NPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382

Query: 496 KSVK----LLETYWLD-DEDETM 513
            S      LL   W D  + + M
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVM 405

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 76/438 (17%), Positives = 132/438 (30%), Gaps = 148/438 (33%)

Query: 2   SLRPNSKADSR-RNKYKVAVDADEGRRRREDNMVEIRKN-KREESLQKKRREGLQNQQP- 58
            ++   +  S     Y    D     R   DN V  + N  R +    K R+ L   +P 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRD-----RLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPA 150

Query: 59  ---------------LANDVNAPGTAKKLENLPVMVAGV-WSNDSGVQYECTT------Q 96
                          +A DV         +    M   + W N       C +       
Sbjct: 151 KNVLIDGVLGSGKTWVALDV-----CLSYKVQCKMDFKIFWLN-LK---NCNSPETVLEM 201

Query: 97  FRKLLS---------IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG 147
            +KLL           + S  I+  I S +       L  + Y          L      
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYEN-------CL------ 247

Query: 148 TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ-GGLVPL 206
                 +V+                 +V+    W   N+      C+ L+ ++   +   
Sbjct: 248 ------LVL----------------LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDF 280

Query: 207 LAQLNGQPKLSMLRNATWT-------LSNFCRGKPQ--PP-FDQVSP-ALPALAHLIHSN 255
           L+            + T T       L  +   +PQ  P      +P  L  +A  I   
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-- 338

Query: 256 DDEVLTDACWALSYLSDGTNDKIQAVIEAGV-----------FPRLAEFLMHPSPSVLIP 304
            D + T   W          DK+  +IE+ +           F RL+ F   P PS  IP
Sbjct: 339 -DGLAT---W--DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P-PSAHIP 388

Query: 305 A--LRTV-GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSI----KKEACWTVSNITA 357
              L  +  +++  D M             ++N L   +K S+     KE+  ++ +I  
Sbjct: 389 TILLSLIWFDVIKSDVMV------------VVNKL---HKYSLVEKQPKESTISIPSIYL 433

Query: 358 GNREQIQVIMHVHAFSII 375
             + +++    +H  SI+
Sbjct: 434 ELKVKLENEYALHR-SIV 450

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 11 SRRNKYK-VAVDADEGRRRREDNMVEIRKNKREESLQKKRR 50
          +R +++K    D+ E RRRR +  VE+RK K+++ + K+R 
Sbjct: 2  ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRN 42

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 70.2 bits (171), Expect = 7e-13
 Identities = 42/361 (11%), Positives = 110/361 (30%), Gaps = 51/361 (14%)

Query: 153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG 212
           K ++    +    + +++ S + ++Q V  + NI          +  QG +  +L     
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL----- 504

Query: 213 QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVL---TDACWALSY 269
                 L N                         AL  ++   +  ++     A  A+ +
Sbjct: 505 ----EYLANKQDIGEPIRIL-----------GCRALTRMLIFTNPGLIFKKYSALNAIPF 549

Query: 270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ-----CVI 324
           L +                   +   +        AL  + N+ + +    +      V 
Sbjct: 550 LFELLPRSTPVDDNPLHNDEQIKLTDN------YEALLALTNLASSETSDGEEVCKHIVS 603

Query: 325 EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIG 384
                  + NL+       +++     +SN+ +         +    F++          
Sbjct: 604 TKVYWSTIENLMLDENVP-LQRSTLELISNMMSHPLT-----IAAKFFNLENPQSLRNFN 657

Query: 385 PLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV--CPDPRIVT 442
            LV LL+ ++ + ++  A   +N  +       + L  +  I+    +      D  +  
Sbjct: 658 ILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQ 717

Query: 443 VCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI--ESLQTHDNAEIYEKSVKL 500
             L     +    E   + G  +V     ++ + + L+     SL+  D+   +  ++ +
Sbjct: 718 RLLMLFFGLF---EVIPDNGTNEVY---PLLQENQKLKDALNMSLKRGDSGPEFSAAIPV 771

Query: 501 L 501
           +
Sbjct: 772 I 772

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 55/403 (13%), Positives = 120/403 (29%), Gaps = 58/403 (14%)

Query: 109 IEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           I+E +R+ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
           +        E +V AL  ++  +     +  ++     LL  +  Q     L      ++
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402

Query: 228 NFCRGKPQPPFDQVSPALPALAHLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
           N      +                           E             D      + ++
Sbjct: 403 NLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYIL 454

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ--ALPCLLNLLSGN- 339
              +   L   + + SP+     +R + NI    +   Q     Q  A+  +L  L+   
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA---QQGAVKIILEYLANKQ 511

Query: 340 -YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK 398
              + I+   C  ++ +                F   + + A  I  L  LL  +     
Sbjct: 512 DIGEPIRILGCRALTRMLI-------FTNPGLIFKKYSALNA--IPFLFELLPRSTPVDD 562

Query: 399 K--------------EAAWAISNATSGGTHEQIK----FLVIQGCIKPLCDLLVCPDPRI 440
                          EA  A++N  S  T +  +     +  +     + +L++  +  +
Sbjct: 563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL 622

Query: 441 VTVCLEGLENIL--------KVGEAEKNLGNTDVNVFTQMIDD 475
               LE + N++        K    E      + N+  +++  
Sbjct: 623 QRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL 665

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 90  QYECTTQFRKLLSIERSPPIEEVIRSGVVPRF---VEFLLREDYPQLQFEAAWALTNIAS 146
            YE       L S E S   E          +   +E L+ ++   LQ      ++N+ S
Sbjct: 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635

Query: 147 GTSEHTKVVIDHG------AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
                     +           I VKLL     + +        NIA   P     +L++
Sbjct: 636 HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK 695

Query: 201 GGLVPLLAQL 210
             L+    Q+
Sbjct: 696 KELIENAIQV 705

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 47/260 (18%), Positives = 70/260 (26%), Gaps = 67/260 (25%)

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKL 216
           D   V +++K L   S  VR  A +ALG I     R           V  L +       
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERA----------VEPLIKALKDEDA 64

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND 276
            + R A   L                 A+  L   +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
                        L + L      V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 -------ERAVEPLIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 337 SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFD 396
                  +++ A   +  I  G                       +   +  L E     
Sbjct: 153 KDED-GWVRQSAADALGEI--GGER--------------------VRAAMEKLAETGTGF 189

Query: 397 IKKEAAWAISNATSGGTHEQ 416
            +K A   +    S   H  
Sbjct: 190 ARKVAVNYLETHKSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 46/245 (18%), Positives = 74/245 (30%), Gaps = 57/245 (23%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           V  +++  L++D   ++  AA+AL  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIK-NLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  ALG I  +              V  L +        + ++A   L     G  +  
Sbjct: 69  AAADALGQIGDER------------AVEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 112

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                 A+  L   +   D  V   A +AL  + D      +AV        L + L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G I  G +         +    +  L         +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLAE-TGTGFARKVAVNYLETHKS 203

Query: 358 GNREQ 362
            N   
Sbjct: 204 FNHHH 208

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 61.7 bits (149), Expect = 4e-10
 Identities = 53/331 (16%), Positives = 107/331 (32%), Gaps = 61/331 (18%)

Query: 111 EVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL 167
           +   + ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L
Sbjct: 360 QNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419

Query: 168 LYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVP----LLAQLNGQPKLSMLRNAT 223
           +   S  V+E   W +G IA       + +  Q  L       L  L   PK++   N +
Sbjct: 420 MNDQSLQVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCS 474

Query: 224 WTLSNFCRGKPQPPFDQVSPALPA-LAHLIHS-----NDDEVLTDACWALSYLSDGTNDK 277
           WT+ N      +     +    PA +  LI +     N+      A  AL+ + +   D 
Sbjct: 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT 534

Query: 278 IQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL----- 332
           +     + +   + + L           +    N +T +D Q+   ++   L  L     
Sbjct: 535 VAETSAS-ISTFVMDKLGQ--------TMSVDENQLTLEDAQSLQELQSNILTVLAAVIR 585

Query: 333 -----------------LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII 375
                              LL       I+ +  + +S + A   +  +  +        
Sbjct: 586 KSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-------- 637

Query: 376 AVIEANIIGPLVALLENAEFDIKKEAAWAIS 406
                     L+  L   +  +   A   I+
Sbjct: 638 ----ETFSPYLLKALNQVDSPVSITAVGFIA 664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 61.0 bits (147), Expect = 5e-10
 Identities = 34/220 (15%), Positives = 62/220 (28%), Gaps = 20/220 (9%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +  V R  ++P  +  L   L      ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT 225
           + L      VR    W L   A            +  +  LL ++    K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 226 LSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 285
            +             ++  L  L         + L     A+  L         +V    
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL-------ADSVGHHL 518

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE 325
             P   + LM        P L    N++  +D     ++E
Sbjct: 519 NKPEYIQMLM--------PPLIQKWNMLKDEDKDLFPLLE 550

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 54/379 (14%), Positives = 102/379 (26%), Gaps = 62/379 (16%)

Query: 161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG-LVPLLAQLNGQPKL--- 216
           +P+ V  +     D+        G   GD       +       + +LA +     L   
Sbjct: 301 IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHI 360

Query: 217 -----SMLRNATW--------TLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDA 263
                 +L +  W         L     G  Q     +   +P L   +      V +  
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSIT 420

Query: 264 CWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCV 323
           CW LS  +     +        +   L + ++  +  V   A      +    +     +
Sbjct: 421 CWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE---EEACTEL 477

Query: 324 IEY--QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEAN 381
           + Y    L  L+   S  Y+                   + I  +       +       
Sbjct: 478 VPYLAYILDTLVFAFS-KYQHKNLLILY-----------DAIGTLADSVGHHLNKPEYIQ 525

Query: 382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL-----VIQGCIKPLCDLLV-- 434
           ++ P +    N   D  K+    +   +S  T  Q  FL     V Q C+  +   L   
Sbjct: 526 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 585

Query: 435 -----------CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIE 483
                       PD   + V L+ L  + +                 Q++  +  L  + 
Sbjct: 586 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN----------IEQLVARSNILTLMY 635

Query: 484 SLQTHDNAEIYEKSVKLLE 502
                   E+ + S  LL 
Sbjct: 636 QCMQDKMPEVRQSSFALLG 654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 46/346 (13%), Positives = 100/346 (28%), Gaps = 25/346 (7%)

Query: 97  FRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVI 156
              L+ + ++   +  I    +      +  ++  +++  +     ++ S  +E    + 
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTE--IFIK 119

Query: 157 DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPK 215
               V + + LL      VR   V  L ++      + + ++L     V  L  L    +
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 216 LSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIH----SNDDEVLTDACWALSYL 270
             +  +    L    R             A   L  +I     S+   V+ D    L  L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV---------------LIPALRTVGNIVTG 315
               N       E     R+  +      +                L+  L +  N    
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299

Query: 316 DDMQTQCVIEYQALPCLLNL-LSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSI 374
                + + +   L  L  + ++      I  E   TVS +  G +        V+A S 
Sbjct: 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSN 359

Query: 375 IAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL 420
                A ++  +  + E   F ++    +            Q + +
Sbjct: 360 PPRP-AIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 61/349 (17%), Positives = 116/349 (33%), Gaps = 33/349 (9%)

Query: 107 PPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 166
           P +   +++ +   F   L  +D P ++  AA  L   A          +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L     D VR  AV A  NIA   P+     L    ++P L Q        +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEAL----VMPTLRQAAEDKSWRVRYMVADKF 266

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 285
           +     K   P    +  +PA  +L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQ--KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345
           + P + E +   +  V       +  +     +     IE+  LP  L  L         
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLSPI--LGKDNTIEH-LLPLFLAQL--------- 372

Query: 346 KEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI 405
           K+ C  V      N + +          I  + ++ ++  +V L E+A++ ++      +
Sbjct: 373 KDECPEVRLNIISNLDCV-----NEVIGIRQLSQS-LLPAIVELAEDAKWRVRLAIIEYM 426

Query: 406 SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454
                    E     +   C+  L D        I       L+ +++ 
Sbjct: 427 PLLAGQLGVEFFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEK 471

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 20/231 (8%)

Query: 109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVK 166
            ++     ++P F+   L+++ P+++      L  +    G  + ++ ++     P  V+
Sbjct: 356 GKDNTIEHLLPLFLA-QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLL-----PAIVE 409

Query: 167 LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTL 226
           L       VR   +  +  +A        +      L  L          ++   AT  L
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLA----GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNL 465

Query: 227 SNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 286
                   +      +  +P +  +    +        + ++ LS+      Q +    +
Sbjct: 466 KKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHM 520

Query: 287 FPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
            P +      P  +V     +++  I    D      ++ +  P L  L  
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQ 568

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 31/219 (14%), Positives = 58/219 (26%), Gaps = 53/219 (24%)

Query: 73  ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSG---------------- 116
           E + + +  +  +   V+        K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 117 ---VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               V   ++  L+++   ++  AA AL  I            D  AV   +K L     
Sbjct: 74  DERAVEPLIK-ALKDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 174 DVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK 233
            VR  A +ALG I  +              V  L +        + ++A   L       
Sbjct: 122 FVRIAAAFALGEIGDERA------------VEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD 272
                        A+  L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 40/274 (14%), Positives = 71/274 (25%), Gaps = 79/274 (28%)

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
           +      +     P            V +  +        + R A + L     GK    
Sbjct: 2   RGSHHHHHHT--DPE----------KVEMYIKNLQDDSYYVRRAAAYAL-----GKIGDE 44

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
                 A+  L   +   D  V   A  AL  + D                 L + L   
Sbjct: 45  -----RAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDE 88

Query: 298 SPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA 357
              V   A   +G I  GD+         +A+  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDEDW-FVRIAAAFALGEI-- 134

Query: 358 GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 417
           G+                       + PL+  L++ +  +++ AA A+      G     
Sbjct: 135 GDER--------------------AVEPLIKALKDEDGWVRQSAADALGEI---GGER-- 169

Query: 418 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI 451
                      +  L          V +  LE  
Sbjct: 170 -------VRAAMEKLAETGTGFARKVAVNYLETH 196

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 56.0 bits (134), Expect = 7e-09
 Identities = 44/240 (18%), Positives = 83/240 (34%), Gaps = 25/240 (10%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQG--GLVPLLAQLNGQPKL 216
           A+ + ++L     +  R +A  ALG I   +    R +VL +     +  L+Q N +  +
Sbjct: 34  ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTI 93

Query: 217 SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEV---LTDACWALSYLSDG 273
             LR   + + +   G           A   L  L+ S DD +     D    L  L D 
Sbjct: 94  KALRALGYLVKDVPMGS-----KTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS 148

Query: 274 --TNDKIQAVIEAGV-------FPRLAEFLMHPS-PSVLIPALRTVGNIVTGDDMQTQCV 323
                 I  ++ +         F      L   +    L   L  + +++  D+     +
Sbjct: 149 KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVEL 208

Query: 324 IEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANII 383
               AL  L   LS    +++K E       +      +   I+ + A  +  +I++ I 
Sbjct: 209 ----ALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSVIS 264

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 34/208 (16%), Positives = 66/208 (31%), Gaps = 13/208 (6%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L +++     +D   +        ++L    S     V+    +  F+   L ++  ++ 
Sbjct: 35  LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALSQENEKVT 92

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG--NIAGDSPR 192
            +A  AL  +       +K  +   A    V LL SP D +R + +  L       DS  
Sbjct: 93  IKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKL 150

Query: 193 CRDLVLSQGGLVPLLAQLNGQ------PKLSMLRNATWTLSNFCRGKPQPPFDQVS-PAL 245
            R  +        L  ++ G          S        + +      Q   + +   AL
Sbjct: 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELAL 210

Query: 246 PALAHLIHSNDDEVLTDACWALSYLSDG 273
             L   +     E +      +S + DG
Sbjct: 211 DVLEKALSFPLLENVKIELLKISRIVDG 238

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 43/397 (10%), Positives = 126/397 (31%), Gaps = 37/397 (9%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLS----IERSPPIEEVIRSGVVPRFVEFLLREDY 130
           +  +   + S+   ++   +   + ++           +   +   +  R    + +++ 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
             +Q EA   + ++ S              +   +  L SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH 250
             C ++V     +  LL++L+    +S  R     ++   R       + +   +P +  
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG 310
             + +DDE+      A          ++   +   +             ++ +  L    
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII-------------NICLKYLTYDP 309

Query: 311 NIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS------IKKEACWTVSNITAGNREQIQ 364
           N    D+ + +  ++              Y         +++ A   +  + +   E + 
Sbjct: 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP 369

Query: 365 VIMHVHAFSIIAVIE-------ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI 417
                 + ++I+  +       A++    ++LL+     ++       +          +
Sbjct: 370 EFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR-PVQSWLCDPDAMEQGETPLTML 428

Query: 418 KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV 454
           +  V    +K L   +     +    C   L  ++ V
Sbjct: 429 QSQVPN-IVKALHKQMKEKSVKTRQCCFNMLTELVNV 464

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 50.9 bits (120), Expect = 1e-06
 Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 123  EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            +         ++  A  +L  +        ++ +      + ++   SPS++V+  A +A
Sbjct: 824  DVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYA 879

Query: 183  LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLS-MLRNATWTLSNFCRGKPQPPFDQV 241
            LG+I+  +            L  +L ++  QPK   +L ++   + +        P+  V
Sbjct: 880  LGSISVGNLPEY--------LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPY--V 929

Query: 242  SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
                  L       ++         L         K+  +    + PRL  +L+  S   
Sbjct: 930  ENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLPRLKGYLISGSSYA 981

Query: 302  LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
                +  V   ++ D  Q    +    +   L  L      ++++ A  T ++ 
Sbjct: 982  RSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVALVTFNSA 1033

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 34/143 (23%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
            + ++   ++ + + AL+ +               A    ++ L +    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
           N      R           V  L +L       +   A  +L     G  +         
Sbjct: 68  NFQ--DERA----------VEPLIKLLEDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 245 LPALAHLIHSNDDEVLTDACWAL 267
             A+  L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPS 172
           +        +E  L  +  +++  AAW + N             D  AV   +KLL   S
Sbjct: 39  MGDEAFEPLLE-SLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 173 DDVREQAVWALGNIAGDS 190
             VR  A  +L  I G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 34/142 (23%)

Query: 160 AVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSML 219
            +      +   +  VR     AL  +  ++              PLL  L+      + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDEA------------FEPLLESLS-NEDWRIR 59

Query: 220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ 279
             A W + NF          Q   A+  L  L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 280 AVIEAGVFPRLAEFLMHPSPSV 301
            V  A     + +     +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 11/60 (18%)

Query: 125 LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
           LL +D   ++  AA +L  I                     KL  + +   R+ AV  L 
Sbjct: 81  LLEDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 27/164 (16%), Positives = 47/164 (28%), Gaps = 46/164 (28%)

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S  L      +   +  V  D   ALS + D      +A         L E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
              A   +GN    D+         +A+  L+ LL  +    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLLEDDS-GFVRSGAARSLEQI--GGER 104

Query: 362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAI 405
                               +   +  L E      +K A   +
Sbjct: 105 --------------------VRAAMEKLAETGTGFARKVAVNYL 128

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 54/357 (15%), Positives = 99/357 (27%), Gaps = 37/357 (10%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL---VLSQ 200
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +             Q
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 201 GGLVPLLAQLNGQPKLSML-----------------------RNATWTLSNFCRGKPQPP 237
           G      ++   +  L  L                       + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI 355
           S  V   A  TVG I     +       +    L CL+  LS      +    CW  S++
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAE--PRVASNVCWAFSSL 477

Query: 356 TAGNREQIQVIMHVHAFSIIAVIE--ANIIGPLVALLENAEFDIKKEAAWAISNATS 410
                E   V       +   +      I+  L+   +  +       + A  +   
Sbjct: 478 AEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 52/340 (15%), Positives = 113/340 (33%), Gaps = 35/340 (10%)

Query: 109 IEEVIRSGVVPRFVEFL---LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFV 165
           +       +VP  + F+   ++    + +  A  A   I  G        +   A+P  +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414

Query: 166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--QPKLSMLRNAT 223
           +L+  PS  VR+ A W +G I        +  ++   L PLL  L      +  +  N  
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 224 WTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 283
           W  S+      +   D          + + S+ + ++              N+   +  E
Sbjct: 472 WAFSSLAEAAYE-AADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530

Query: 284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKS 343
           +     L E + + S     PA++    ++             + L  +L + S     S
Sbjct: 531 S-----LMEIVKN-SAKDCYPAVQKTTLVIM------------ERLQQVLQMESHIQSTS 572

Query: 344 IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE--FDIKKEA 401
            + +     S + A     +Q ++          I   ++  L+ + ++      ++++A
Sbjct: 573 DRIQFNDLQSLLCAT----LQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDA 628

Query: 402 AWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV 441
             A+S        E +K++  +     L   L       V
Sbjct: 629 LMAVSTLVEVLGGEFLKYM--EAFKPFLGIGLKNYAEYQV 666

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 29/177 (16%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
               +  +L  D   L++  A+ +    +GT  ++ V        +    +   +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            AV ALG +                +  ++  L+      +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL 294
                 A+  L  L     D V   A  ALS +     +K+         P++A+  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN--------PQVADIN 690

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 47/282 (16%), Positives = 80/282 (28%), Gaps = 33/282 (11%)

Query: 84  SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTN 143
              + V+   T      L   ++   +E  R  ++    E     D  +++  A   L  
Sbjct: 185 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVK 243

Query: 144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS---- 199
           I S   ++ +  +      I ++ + S  D+V  Q +    N+  +              
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303

Query: 200 ---------------QGGLVPLLAQLN-------GQPKLSMLRNATWTLSNFCRGKPQPP 237
                             LVP+L Q              +  + A   L           
Sbjct: 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363

Query: 238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP 297
              V P +      I + D      A  A   + +G        +     P L E +  P
Sbjct: 364 VPHVLPFIKE---HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420

Query: 298 SPSVLIPALRTVGNIVT--GDDMQTQCVIEYQALPCLLNLLS 337
           S  V   A  TVG I     +       +    L CL+  LS
Sbjct: 421 SVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLS 461

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	541
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.84
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.77
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.77
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.76
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.74
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.73
3grl_A	651	General vesicular transport factor P115; vesicle t	99.73
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.68
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.64
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.63
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.6
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.6
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.58
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.57
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.56
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.54
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.54
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.5
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.42
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.41
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.4
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.4
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.4
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.39
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.29
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.15
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.11
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.05
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.98
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.95
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.9
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.85
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.83
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.8
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.73
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.66
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.59
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.57
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.54
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.52
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.46
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.4
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.38
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.34
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.32
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.31
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.31
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.26
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.26
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.17
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.15
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.14
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.12
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.08
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.99
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.89
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.85
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.72
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.54
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.52
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.45
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.43
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.3
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.19
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.19
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.13
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.08
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.0
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.94
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.93
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.83
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.41
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.23
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.12
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.08
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.92
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.74
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.52
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.38
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.24
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.17
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.95
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.8
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.73
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.53
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.25
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	93.86
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.74
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	93.32
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	92.57
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	92.41
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	89.41
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.01
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	88.96
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	88.75
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	88.17
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	87.94
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	84.25
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	81.62
2jak_A	392	Serine/threonine-protein phosphatase 2A 56 kDa RE	81.42
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	81.41

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1e-76  Score=621.22  Aligned_cols=518  Identities=46%  Similarity=0.748  Sum_probs=404.5

Q ss_pred             CCCCCCC-CchHhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCC-CccCCCCCchhhhcCCHHH
Q 009184            1 MSLRPNS-KADSRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQP-LANDVNAPGTAKKLENLPV   77 (541)
Q Consensus         1 ~~~~~~~-~~~~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~l~~   77 (541)
                      |+++++. .+++|+++||+ +.|++|+||||+++.++|||+||++.+.|||+.....++. .+..............++.
T Consensus         1 ~~~~~~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (529)
T 3tpo_A            1 MSTNENANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVED   80 (529)
T ss_dssp             -------------------------------------------CCSCSCCCCCC---------------CGGGSSCCHHH
T ss_pred             CCCCCCCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHH
Confidence            7887775 67899999998 8999999999999999999999999999999875422221 1111111111112247899


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009184           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (541)
Q Consensus        78 l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~  157 (541)
                      +++.++|+|++.++.|+..+|++++.+++++++.+++.|++|.|+++|+.++++.++..|+|+|+||+.++++.+..+++
T Consensus        81 lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~  160 (529)
T 3tpo_A           81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD  160 (529)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999998889999999999999999999987766999999999999999999999999999


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC----hhhHHHHHHHHHHhhhcCC
Q 009184          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~----~~~~~~~a~~~L~~l~~~~  233 (541)
                      .|++|.|+.+|.++++.++++|+|+|+||+.+++.+|+.+.+.|++++|+.+|....    ...+.+.++|++++++.+.
T Consensus       161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~  240 (529)
T 3tpo_A          161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  240 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999995332    2457889999999999987


Q ss_pred             -CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       234 -~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                       +........+++|.|+.++.+++++++..++|+|++++....+..+.+++.|+++.|+.+|.++++.++.+++++|+|+
T Consensus       241 ~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl  320 (529)
T 3tpo_A          241 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  320 (529)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence             6666777789999999999999999999999999999999988888899999999999999999999999999999999


Q ss_pred             hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      +++++.....+++.|+++.|+.+|.++ ++.++++|+|+|+|++.+++.+..           .+++.|++|.|+.++.+
T Consensus       321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~-----------~v~~~g~i~~Lv~lL~~  388 (529)
T 3tpo_A          321 VTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQ-----------QVVNHGLVPFLVGVLSK  388 (529)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHH-----------HHHHTTHHHHHHHHHHS
T ss_pred             HccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHH-----------HHHhcCcHHHHHHHhcC
Confidence            999999999999999999999999998 999999999999999999999998           99999999999999999


Q ss_pred             CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhH
Q 009184          393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQM  472 (541)
Q Consensus       393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  472 (541)
                      ++.+++.+|+|+|+|++.+++++++.+|++.|++++|+++|+++|++++..++++|.+|++.+++..     ..+.|+..
T Consensus       389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~  463 (529)
T 3tpo_A          389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIM  463 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-----ChHHHHHH
Confidence            9999999999999999998899999999999999999999999999999999999999999887643     35778999


Q ss_pred             hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC---CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009184          473 IDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET---MPPGDASQPGFGFGGNGNPPAPSGGFNF  540 (541)
Q Consensus       473 i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (541)
                      |+++||+++|+.||+|+|++||++|..||++||+++++|+   .|+.++  ++|.|+.++   .++|+|||
T Consensus       464 iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~f~f  529 (529)
T 3tpo_A          464 IEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS--EGFAFQVQD---GAPGTFNF  529 (529)
T ss_dssp             HHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--------------------------------------
T ss_pred             HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCC--cccccCCCC---CCCCCCCC
Confidence            9999999999999999999999999999999999776655   365543  379998665   46789999

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.9e-65  Score=532.81  Aligned_cols=486  Identities=46%  Similarity=0.761  Sum_probs=393.8

Q ss_pred             HHHHHHHHhhHHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHH
Q 009184           32 NMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE  111 (541)
Q Consensus        32 ~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~  111 (541)
                      -.++.|+++.+....+.++...+.+.....+.... ....-..++.+++.++|+|++.|+.|+..+|++++.+++|+++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~   95 (510)
T 3ul1_B           17 GMLETAAALFERNHMDSPDLGTDDDDLAMADIGSN-QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDN   95 (510)
T ss_dssp             -------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred             ccHHHHHHHHHhhccCCccccCCccccchhhhccc-cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHH
Confidence            34566666666666666655433222111111110 11111368999999999999999999999999999988999999


Q ss_pred             HHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh
Q 009184          112 VIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP  191 (541)
Q Consensus       112 ~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  191 (541)
                      +++.|++|.|+++|++++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++.+++++|+|+|+||+.+++
T Consensus        96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~  175 (510)
T 3ul1_B           96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS  175 (510)
T ss_dssp             HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            99999999999999877669999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCC----hhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHH
Q 009184          192 RCRDLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWA  266 (541)
Q Consensus       192 ~~r~~i~~~g~i~~Ll~~l~~~~----~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~  266 (541)
                      .+|+.+.+.|++++|+.++....    ...+++.++|++++++.+. +........+++|.|+.++.+++++++..++|+
T Consensus       176 ~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~a  255 (510)
T 3ul1_B          176 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA  255 (510)
T ss_dssp             HHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999995332    2457889999999999987 666667778999999999999999999999999


Q ss_pred             HHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHH
Q 009184          267 LSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKK  346 (541)
Q Consensus       267 L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~  346 (541)
                      |++++....+..+.+.+.|+++.|+.+|.+++..++.+++++|+|++++++..+..+++.|+++.|+.+|.++ ++.+++
T Consensus       256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~  334 (510)
T 3ul1_B          256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQK  334 (510)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHH
T ss_pred             HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHH
Confidence            9999999888888899999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCCh
Q 009184          347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCI  426 (541)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i  426 (541)
                      .|+|+|+|++.+++.+.+           .+++.|+++.|+.++.+++.+++++|+|+|+|++.+++.+++.+|++.|++
T Consensus       335 ~A~~aL~nl~a~~~~~~~-----------~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i  403 (510)
T 3ul1_B          335 EATWTMSNITAGRQDQIQ-----------QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII  403 (510)
T ss_dssp             HHHHHHHHHTTSCHHHHH-----------HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCcHHHHH-----------HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence            999999999999999998           999999999999999999999999999999999998899999999999999


Q ss_pred             HHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          427 KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       427 ~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                      ++|+++|+++|++++..++++|.+|++.+++..     ..+.|+.+|+++||+++|+.||+|+|++||++|..||++||+
T Consensus       404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-----~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-----chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999887643     357799999999999999999999999999999999999999


Q ss_pred             CCCCCC---CCCCCCCCCCcccCCCCCCCCCCCCCcC
Q 009184          507 DDEDET---MPPGDASQPGFGFGGNGNPPAPSGGFNF  540 (541)
Q Consensus       507 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (541)
                      +|++|+   .|+.++  ++|.|+.++   .++++|||
T Consensus       479 ~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~  510 (510)
T 3ul1_B          479 VEEEEDQNVVPETTS--EGFAFQVQD---GAPGTFNF  510 (510)
T ss_dssp             -------------------------------------
T ss_pred             CccccccccCCCCCc--cccccCCCC---CCCCCCCC
Confidence            877665   355443  379998765   47789999

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=7.8e-65  Score=533.03  Aligned_cols=501  Identities=80%  Similarity=1.253  Sum_probs=404.5

Q ss_pred             CCCCCCCCchHhhhhcCCCCCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCccCCCCCchhhhcCCHHHHHH
Q 009184            1 MSLRPNSKADSRRNKYKVAVDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLANDVNAPGTAKKLENLPVMVA   80 (541)
Q Consensus         1 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   80 (541)
                      |+++++.++++|+++||++++++|+||||+++.++|||+||++.+.|||++....+.. +............+.+|.+++
T Consensus         3 ~~~~~~~~~~~~~~~~k~~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~l~~lv~   81 (528)
T 4b8j_A            3 MSLRPSERVEVRRNRYKVAVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAP-VPASAATGVDKKLESLPAMIG   81 (528)
T ss_dssp             ------------------------CCCCC-----------------CCCC-----------------------CHHHHHH
T ss_pred             CCCCCCCChHHHHHhhcccCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccc-cccccccchhhhHHHHHHHHH
Confidence            7778888899999999999999999999999999999999999999999974322211 010111112223468999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCC
Q 009184           81 GVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA  160 (541)
Q Consensus        81 ~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~  160 (541)
                      .|.++++..+..|++.|+++++...+++++.++..|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.|+
T Consensus        82 ~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~  161 (528)
T 4b8j_A           82 GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGA  161 (528)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCc
Confidence            99999999999999999999987756889999999999999999998766899999999999999998999999999999


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhh
Q 009184          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (541)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  240 (541)
                      ++.|+.+|.++++.+++.|+|+|+||+.+.+.+++.+...|++++|+.++..+.+..++..++|+|++|+...+......
T Consensus       162 i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  241 (528)
T 4b8j_A          162 VPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ  241 (528)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH
Confidence            99999999999999999999999999999898999999999999999999777889999999999999999887777777


Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (541)
Q Consensus       241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  320 (541)
                      ..+++|.|+.++.+++++++..++|+|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|++++.+.+...
T Consensus       242 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~  321 (528)
T 4b8j_A          242 TRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT  321 (528)
T ss_dssp             HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHH
Confidence            89999999999999999999999999999999888888889999999999999999999999999999999999999888


Q ss_pred             HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE  400 (541)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~  400 (541)
                      +.+++.|+++.|+.+|.+..++.++.+|+|+|+|++.+++..+.           .+++.|+++.|+.+|.+++++++..
T Consensus       322 ~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~-----------~~~~~~~i~~L~~lL~~~~~~v~~~  390 (528)
T 4b8j_A          322 QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ-----------AVINAGIIGPLVNLLQTAEFDIKKE  390 (528)
T ss_dssp             HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH-----------HHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH-----------HHHHCCCHHHHHHHHhcCCHHHHHH
Confidence            89999999999999998765789999999999999998888888           8999999999999999999999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHH
Q 009184          401 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE  480 (541)
Q Consensus       401 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  480 (541)
                      |+|+|+|++..++++...++++.|+++.|+.+|..++++++..++++|.+|+..++......+...+.|+..++++||++
T Consensus       391 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  470 (528)
T 4b8j_A          391 AAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLE  470 (528)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHH
Confidence            99999999998788999999999999999999999999999999999999999887644322224677999999999999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCCC
Q 009184          481 KIESLQTHDNAEIYEKSVKLLETYWLDDEDETM  513 (541)
Q Consensus       481 ~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~~~  513 (541)
                      +|+.|++|++++++++|..|+++||+.+++++.
T Consensus       471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~  503 (528)
T 4b8j_A          471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM  503 (528)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCCcccccc
Confidence            999999999999999999999999998887764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.2e-59  Score=491.47  Aligned_cols=491  Identities=54%  Similarity=0.825  Sum_probs=424.8

Q ss_pred             CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhHHHHHhhhhcccc---CCCCCccCC---CCCchh-hhcCCHHHH
Q 009184            8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQ---NQQPLANDV---NAPGTA-KKLENLPVM   78 (541)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~---~~~~~~~~~---~~~~~~-~~~~~l~~l   78 (541)
                      +++.|++.||+ + +|++|+||||++..++|||+||++.+.|||+....   .+...+.+.   ...... ...+.++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l   92 (530)
T 1wa5_B           13 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   92 (530)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             chHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHH
Confidence            67889999999 8 89999999999999999999999999999987532   111000000   000000 123579999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC
Q 009184           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (541)
Q Consensus        79 ~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~  158 (541)
                      ++.|+++++..+..|+..|+++++....++++.+++.|++|.|+++|.+++++.++..|+|+|++++.++++.+..+++.
T Consensus        93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~  172 (530)
T 1wa5_B           93 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  172 (530)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC
Confidence            99999999999999999999999876567788899999999999999997339999999999999999889999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCC
Q 009184          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (541)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  237 (541)
                      |+++.|+.+|.++++.+++.|+|+|++++.+.+..++.+...|+++.|+.++ .+.+..++..++|+|++|+.+. +...
T Consensus       173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~  251 (530)
T 1wa5_B          173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  251 (530)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence            9999999999999999999999999999999888999999999999999999 5588999999999999999987 6667


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  317 (541)
                      .....+++|.|+.++.++++.++..++|+|++++...+.....+++.|+++.|+.+|.++++.++..|+++|++++.+.+
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~  331 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  331 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence            77779999999999999999999999999999998888778888999999999999999999999999999999999988


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI  397 (541)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  397 (541)
                      ...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++..++           .+++.|+++.|+.+|.++++++
T Consensus       332 ~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~-----------~~~~~~~l~~L~~lL~~~~~~v  399 (530)
T 1wa5_B          332 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ-----------AVIDANLIPPLVKLLEVAEYKT  399 (530)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH-----------HHHHTTCHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHCCCHHHHHHHHhcCCHHH
Confidence            8888889999999999999998 899999999999999998888888           8899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCH--HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhh
Q 009184          398 KKEAAWAISNATSGGTH--EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD  475 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~  475 (541)
                      +..|+|+|+|++..+.+  +...++++.|+++.|+.++..++++++..++++|.+++..++..........++|+..|.+
T Consensus       400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~  479 (530)
T 1wa5_B          400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK  479 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHH
Confidence            99999999999987666  7888999999999999999999999999999999999988765422101134678999999


Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCC
Q 009184          476 AEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDE  511 (541)
Q Consensus       476 ~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~  511 (541)
                      +||+++|+.|++|++++|++.|..+|++||..+++|
T Consensus       480 ~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          480 AGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             TTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            999999999999999999999999999999887764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=8.7e-47  Score=388.09  Aligned_cols=426  Identities=59%  Similarity=0.941  Sum_probs=386.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhc-CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~-g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      ++.+++.++++++.++..|+..|+++++...+++.+.+++. |++|.|+++|++++++.++..|+++|.+++.++++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78999999999999999999999999875446777888887 99999999999983499999999999999998888888


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      .+++.|+++.|+++|.++++.+++.|+|+|++++.+.+..++.+.+.|+++.++.++..+.+..++..++|+|.+++.+.
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            88999999999999999999999999999999999998899999999999999999955678999999999999999886


Q ss_pred             -CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          234 -PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       234 -~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                       +........+++|.|+.++.++++.++..++|+|.+++...++....+.+.|+++.|+.+|.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             5556666689999999999999999999999999999988777778888899999999999999999999999999999


Q ss_pred             hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      +.+.+...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+           .+++.|+++.|+.++.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~-----------~~~~~~~l~~L~~~l~~  329 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQ-----------TVIDANIFPALISILQT  329 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHH-----------HHHHTTHHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHCCCHHHHHHHHhc
Confidence            999888888888999999999999998 899999999999999998888888           88899999999999999


Q ss_pred             CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhH
Q 009184          393 AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQM  472 (541)
Q Consensus       393 ~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~  472 (541)
                      ++++++..|+|+|+|++..++++....+++.|+++.|+.+++.++++++..++++|.+++..++..........++|+..
T Consensus       330 ~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~  409 (450)
T 2jdq_A          330 AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCAL  409 (450)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHH
Confidence            99999999999999999876788888899999999999999999999999999999999987765432111134679999


Q ss_pred             hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCCC
Q 009184          473 IDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDEDET  512 (541)
Q Consensus       473 i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~~~  512 (541)
                      |.+.||+++|..|++|++.++++.|..+|++||+++++++
T Consensus       410 l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  449 (450)
T 2jdq_A          410 IEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS  449 (450)
T ss_dssp             HHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence            9999999999999999999999999999999998776653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=5.5e-40  Score=348.00  Aligned_cols=367  Identities=15%  Similarity=0.135  Sum_probs=317.8

Q ss_pred             CHHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCcHHHHH-hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh-
Q 009184           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS-  149 (541)
Q Consensus        74 ~l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~-  149 (541)
                      .++.+++.|.++  |++.+..|++.|..+...  .+....++ +.|++|.|+++|++++ +.+++.|+|+|+||+.+++ 
T Consensus       378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchh
Confidence            367788888887  899999999999999643  34444555 6899999999999987 9999999999999998652 


Q ss_pred             ----------------------------hH---HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 009184          150 ----------------------------EH---TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVL  198 (541)
Q Consensus       150 ----------------------------~~---~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~  198 (541)
                                                  ..   .+.+++.|++|.|+.++.++++.++++|+|+|+||+++. ++|..++
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv  533 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVV  533 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHH
Confidence                                        12   267889999999999999999999999999999999764 5999999


Q ss_pred             hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCCh--hhhhchHHHHHHhhccCC-hhHHHHHHHHHHHhccCC
Q 009184          199 SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHSND-DEVLTDACWALSYLSDGT  274 (541)
Q Consensus       199 ~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~l~~~~  274 (541)
                      +.|++++|+.+| .+.+...++.|+|+|.+++.+. +...+  ....+++|.|+.+|.++. ......++|+|+||+..+
T Consensus       534 ~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~  612 (810)
T 3now_A          534 QEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN  612 (810)
T ss_dssp             HTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence            999999999999 5667788999999999999764 22111  123568999999998653 344678999999999998


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                      ++..+.+++.|+++.|+.+|.++++.++.+|+++|+|++.+.+.....+...|.++.|+.++.+. +..++++|+|+|+|
T Consensus       613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALan  691 (810)
T 3now_A          613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAI  691 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999997765544332379999999999998 99999999999999


Q ss_pred             HhcCChHHHHHHHhhchhhHHHHHh-cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhc
Q 009184          355 ITAGNREQIQVIMHVHAFSIIAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLL  433 (541)
Q Consensus       355 l~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL  433 (541)
                      ++.+++.+++           .+++ .|+++.|++++.+++.++++.|+|+|.|++.+ +.++..++++.|++++|+.++
T Consensus       692 Lt~~s~~~~~-----------~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL  759 (810)
T 3now_A          692 ITSVSVKCCE-----------KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLG  759 (810)
T ss_dssp             HHHHCHHHHH-----------HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSC
T ss_pred             HhCCCHHHHH-----------HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHH
Confidence            9998888888           8998 89999999999999999999999999999984 678899999999999999999


Q ss_pred             CCC---ChHHHHHHHHHHHHHHHhhHhh
Q 009184          434 VCP---DPRIVTVCLEGLENILKVGEAE  458 (541)
Q Consensus       434 ~~~---~~~~~~~~l~~L~~l~~~~~~~  458 (541)
                      +.+   +++++..++++|.+++++|.-.
T Consensus       760 ~~~d~~~~~i~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          760 QLPDDTRAKAREVATQCLAAAERYRIIE  787 (810)
T ss_dssp             CCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred             hCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence            765   6899999999999999887543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=5e-40  Score=330.59  Aligned_cols=368  Identities=18%  Similarity=0.176  Sum_probs=295.7

Q ss_pred             hhhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcH-HHHHhcCCHHHHHHhhcCCCc-----------HHHHHH
Q 009184           69 AKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDY-----------PQLQFE  136 (541)
Q Consensus        69 ~~~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~-----------~~i~~~  136 (541)
                      ..+++.++.++..+.+.|+..      .++++++...++++ ..+++.|++|.|+++|...+.           ++++.+
T Consensus        28 ~~~~~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~  101 (458)
T 3nmz_A           28 GTKVEMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR  101 (458)
T ss_dssp             -----------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred             CchHHHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence            346678899999999888762      44445444445555 778899999999999997542           799999


Q ss_pred             HHHHHHHHhcCChhHHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCChh
Q 009184          137 AAWALTNIASGTSEHTKVVIDHGAV----------PIFVKLLYSPS--DD-----VRE-------QAVWALGNIAGDSPR  192 (541)
Q Consensus       137 a~~~L~~l~~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~  192 (541)
                      |+|+|+||+.+.++.+....+.|++          +.+++++.+..  .+     +++       +|+|+|+|++.+ ++
T Consensus       102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e  180 (458)
T 3nmz_A          102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE  180 (458)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence            9999999999999999998888888          66777776642  22     445       999999999766 77


Q ss_pred             hHHHHHhcCChHHHHHhhcC----------CChhhHHHHHHHHHHhhhcCCCCCChhh--hhchHHHHHHhhccCChhHH
Q 009184          193 CRDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPALAHLIHSNDDEVL  260 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~l~~L~~lL~~~d~~v~  260 (541)
                      +|+.+.+.|++++|+.+|..          ..++.+++.++|+|.|||.+.+......  ..|++|.|+.+|.+++++++
T Consensus       181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~  260 (458)
T 3nmz_A          181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ  260 (458)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence            99999999999999999931          2357789999999999998864222222  45679999999999999999


Q ss_pred             HHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCCchhHHHHH-hcCchHHHHHhhc
Q 009184          261 TDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTGDDMQTQCVI-EYQALPCLLNLLS  337 (541)
Q Consensus       261 ~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~  337 (541)
                      ..++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.+..++..|+.+|+||+.+++.....+. ..|+++.|+.+|.
T Consensus       261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~  340 (458)
T 3nmz_A          261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT  340 (458)
T ss_dssp             HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence            9999999999985 566778889999999999975 567889999999999999985655444555 7899999999999


Q ss_pred             CCCch---hHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184          338 GNYKK---SIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       338 ~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  411 (541)
                      +..+.   .+++.|+|+|.|++.   ++++..+           .+.+.|+++.|+.+|.+++.+++++|+|+|.|++.+
T Consensus       341 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~-----------~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~  409 (458)
T 3nmz_A          341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ-----------ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR  409 (458)
T ss_dssp             CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH-----------HHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence            87222   489999999999997   7888888           899999999999999999999999999999999874


Q ss_pred             CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184          412 GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       412 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~  455 (541)
                       ++++...+++.|++++|+.+|.++++.++..++++|.+|+...
T Consensus       410 -~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          410 -NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             -CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             -CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence             6888999999999999999999999999999999999999754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=9e-39  Score=327.04  Aligned_cols=365  Identities=19%  Similarity=0.209  Sum_probs=310.3

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDL  196 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (541)
                      .+|.|+.+|++++ ++++..|+++|.+++.+++..+..+++.|++|.|+++|.++++.+++.|+|+|.||+.++++.+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4899999999998 999999999999999888888889999999999999999999999999999999999988889999


Q ss_pred             HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc--------c--------CChhHH
Q 009184          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH--------S--------NDDEVL  260 (541)
Q Consensus       197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~--------~--------~d~~v~  260 (541)
                      +.+.|++++|+.+|..+.++.+++.++|+|+||+.+......... |++|.|+.++.        +        .+.++.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995478899999999999999998443333444 99999999993        2        246677


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcC------------------
Q 009184          261 TDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG------------------  315 (541)
Q Consensus       261 ~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~------------------  315 (541)
                      ..++|+|++++.. ++....+.+. |+++.|+.+|.+      .+..+...++.+|.|++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999987 6677888887 999999999975      4567888899889888631                  


Q ss_pred             --------------------------------CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH--
Q 009184          316 --------------------------------DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE--  361 (541)
Q Consensus       316 --------------------------------~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  361 (541)
                                                      .+...+.+++.|+++.|+.+|.+..++.++..|+|+|+|+++++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1123345667788999999998775789999999999999986533  


Q ss_pred             -HH-HHHHhhchhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCCh
Q 009184          362 -QI-QVIMHVHAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP  438 (541)
Q Consensus       362 -~~-~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~  438 (541)
                       .+ +           .++ +.|++|.|+++|.+++.+++++|+|+|.|++..   .....++..|++++|+++|...++
T Consensus       320 ~~~~~-----------~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL~~~~~  385 (457)
T 1xm9_A          320 SGMSQ-----------LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTG  385 (457)
T ss_dssp             HHHHH-----------HHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTTTSCCS
T ss_pred             HHHHH-----------HHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhccCCCC
Confidence             22 3           344 689999999999999999999999999999874   244566677899999999998653


Q ss_pred             ------HHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCC
Q 009184          439 ------RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIYEKSVKLLETYWLDDE  509 (541)
Q Consensus       439 ------~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~i~~~a~~il~~~~~~~~  509 (541)
                            +++..++.+|.+++..++.           +...+.++||++.|.+|+.|. +++++..|.++|..||...+
T Consensus       386 ~~~~~~~v~~~~l~~l~ni~~~~~~-----------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          386 NTSNSEDILSSACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             CCCCcHHHHHHHHHHHHHHHhcCHH-----------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence                  6888999999999865433           577888999999999999999 99999999999999997543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=7.7e-38  Score=326.94  Aligned_cols=367  Identities=25%  Similarity=0.375  Sum_probs=325.2

Q ss_pred             cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        72 ~~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      .+.+|.+++.|.+ +++.++..|+++|.+++++. ......+++.|++|.|+.+|.+++ +.++..|+|+|+||+.++++
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~~~~  195 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSA  195 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhccCHH
Confidence            4689999999975 56899999999999999764 556778899999999999999998 99999999999999999999


Q ss_pred             HHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~  225 (541)
                      .+..+++.|+++.|+.+|..++     ..+...++|+|++++.+...........++++.|+.++ .+.++.++..++|+
T Consensus       196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a~~a  274 (529)
T 3tpo_A          196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  274 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHHHHH
Confidence            9999999999999999998643     56788999999999987655555555567899999999 78899999999999


Q ss_pred             HHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHH
Q 009184          226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (541)
Q Consensus       226 L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~  304 (541)
                      |++++.+.+. .......+++|.|+.+|.+++..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..
T Consensus       275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~  354 (529)
T 3tpo_A          275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  354 (529)
T ss_dssp             HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHH
Confidence            9999987532 233345789999999999999999999999999999998888888999999999999999999999999


Q ss_pred             HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcH
Q 009184          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANII  383 (541)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l  383 (541)
                      |+++|+|++.++..+...+++.|+++.|+.+|.++ +..++++|+|+|+|++. ++++++.           .+++.|++
T Consensus       355 a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~-----------~l~~~g~i  422 (529)
T 3tpo_A          355 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIV-----------YLVHCGII  422 (529)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHH-----------HHHHTTCH
T ss_pred             HHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHH-----------HHHHCcCH
Confidence            99999999999999999999999999999999999 99999999999999997 6788888           89999999


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhccC----CCHHH-HHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184          384 GPLVALLENAEFDIKKEAAWAISNATSG----GTHEQ-IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       384 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~----~~~~~-~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      +.|+.+|.+.+++++..++++|.|+...    +..+. ...+.+.|+++.|..+..+++.++...+..+|...+.
T Consensus       423 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          423 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999742    23333 4445578999999999999999999999988887764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4.2e-38  Score=327.07  Aligned_cols=368  Identities=26%  Similarity=0.377  Sum_probs=324.6

Q ss_pred             cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        72 ~~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      .+.+|.|+++|.+ +++.+|..|+++|.+++++. .+..+.+++.|++|.|+.+|.+++ ++++..|+|+|+||+.++++
T Consensus        99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~  176 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  176 (510)
T ss_dssp             TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            3679999999985 56899999999999999864 667788999999999999999988 99999999999999998999


Q ss_pred             HHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~  225 (541)
                      .+..+.+.|+++.|+.++..++     ..+...++|+++|++.............++++.|+.++ .+.++.++..++|+
T Consensus       177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~a  255 (510)
T 3ul1_B          177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  255 (510)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHH
Confidence            9999999999999999998743     46788999999999987654445555567899999999 78889999999999


Q ss_pred             HHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHH
Q 009184          226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (541)
Q Consensus       226 L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~  304 (541)
                      |++|+.+.+. .......+++|.|+.+|.+.+..++..++++|++++..++.....+++.|+++.|+.+|.+++..++..
T Consensus       256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~  335 (510)
T 3ul1_B          256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  335 (510)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHH
T ss_pred             HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHH
Confidence            9999987532 223345789999999999999999999999999999999888888999999999999999999999999


Q ss_pred             HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcH
Q 009184          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANII  383 (541)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l  383 (541)
                      |+++|+|++.++..+...+++.|+++.|+.++.+. +..++++|+|+|+|++. ++.+++.           .+++.|++
T Consensus       336 A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~-----------~L~~~g~i  403 (510)
T 3ul1_B          336 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIV-----------YLVHCGII  403 (510)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHH-----------HHHHTTCH
T ss_pred             HHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHH-----------HHHHCCCH
Confidence            99999999999999999999999999999999999 99999999999999998 6778888           89999999


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhccC----CCHH-HHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          384 GPLVALLENAEFDIKKEAAWAISNATSG----GTHE-QIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       384 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~----~~~~-~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      +.|+.+|.+.+++++..++++|.|++..    +..+ ....+.+.|+++.|-.+..+++.++...+..+|.+.+..
T Consensus       404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~  479 (510)
T 3ul1_B          404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV  479 (510)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999752    2333 344455789999999999999999999999888877643

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.1e-36  Score=319.47  Aligned_cols=402  Identities=18%  Similarity=0.204  Sum_probs=341.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.+|.+++.|.++++.++..|++.|.++.... ......+.+.|++|.|+++|.+++ +.++..++.+|.+++.++++.+
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~  178 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHH
Confidence            68999999999999999999999999998764 455667778999999999999987 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      ..+.+.|+++.|+.++.+ .....+..++.+|.+++.. +..+..+.+.|+++.++.++ .+.+..+++.++|+|.+++.
T Consensus       179 ~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~  256 (529)
T 1jdh_A          179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhc
Confidence            999999999999999976 4567778899999999964 45788889999999999999 66689999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTV  309 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L  309 (541)
                      ..+..  ....+++|.|+.++.+++++++..++|+|++++..+++....+.+.|+++.|+.+|.+  .++.++..|+++|
T Consensus       257 ~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          257 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            86432  2346899999999999999999999999999998888788889999999999999965  3478999999999


Q ss_pred             hHhhcCCch---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL  386 (541)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L  386 (541)
                      +|++.+.+.   ....+.+.|+++.|+.+|.++.++.++..++|+|+|++.+... ..           .+.+.|+++.|
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~-~~-----------~~~~~~~i~~L  402 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HA-----------PLREQGAIPRL  402 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HH-----------HHHHTTHHHHH
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-hH-----------HHHHcCCHHHH
Confidence            999886543   3457788999999999999883469999999999999986444 46           88899999999


Q ss_pred             HHHhhcCchhHHHHHHHHHHH--hccCC------------------CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHH
Q 009184          387 VALLENAEFDIKKEAAWAISN--ATSGG------------------THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE  446 (541)
Q Consensus       387 ~~~l~~~~~~v~~~a~~aL~n--l~~~~------------------~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~  446 (541)
                      +.++.+++++++++|+|++.|  +..++                  .++....+.+.|+++.|+.++.+++++++..+.+
T Consensus       403 ~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~  482 (529)
T 1jdh_A          403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG  482 (529)
T ss_dssp             HHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHH
Confidence            999999889999988888877  33322                  2344566788999999999999999999999999


Q ss_pred             HHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184          447 GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  504 (541)
Q Consensus       447 ~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~  504 (541)
                      +|.++...            +.++..+.+.||++.|..|+.|++++|+..|..++.++
T Consensus       483 ~l~~l~~~------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          483 VLCELAQD------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHTTS------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            99997632            12577889999999999999999999999999999865

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=323.07  Aligned_cols=405  Identities=18%  Similarity=0.219  Sum_probs=343.3

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.++.+++.|.++++.++..|+++|.++++.. ......+++.|++|.|+++|++++ +.++..++.+|.+++.++++.+
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~  175 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  175 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHH
Confidence            57899999999999999999999999999864 556677788999999999999987 8899999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      ..+.+.|+++.|+.++.+. ...++..++.+|.|++.. +..+..+.+.|+++.|+.++ ...+..+++.++|+|.+++.
T Consensus       176 ~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~  253 (644)
T 2z6h_A          176 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  253 (644)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999874 477889999999999964 45888999999999999999 66789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTV  309 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L  309 (541)
                      ..+..  ....+++|.|+.++.+.+++++..++|+|++++..+......+.+.|+++.|+.+|.+.  .+.++..|+++|
T Consensus       254 ~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          254 AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            76332  34468999999999999999999999999999998888888899999999999999763  378999999999


Q ss_pred             hHhhcCCch--h-HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184          310 GNIVTGDDM--Q-TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL  386 (541)
Q Consensus       310 ~nl~~~~~~--~-~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L  386 (541)
                      +|++.....  . ...+++.|+++.|+.+|.+..++.++++|+|+|+|++.+...+ +           .+++.|+++.|
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~-----------~i~~~~~i~~L  399 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-A-----------PLREQGAIPRL  399 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-H-----------HHHHTTHHHHH
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-H-----------HHHHcCCHHHH
Confidence            999975442  2 3347789999999999998744799999999999999865544 6           88899999999


Q ss_pred             HHHhhcCchhHHHHHHHHH----------------------HHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184          387 VALLENAEFDIKKEAAWAI----------------------SNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  444 (541)
Q Consensus       387 ~~~l~~~~~~v~~~a~~aL----------------------~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~  444 (541)
                      ++++.+.++++|++|+|++                      .+++.  +......+.+.|+++.|+.+|.+.+++++..+
T Consensus       400 v~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a  477 (644)
T 2z6h_A          400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA  477 (644)
T ss_dssp             HHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHH
Confidence            9999886666555555554                      44544  23444577789999999999999999999999


Q ss_pred             HHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHH------------------HHH--HHHHHHHh
Q 009184          445 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEI------------------YEK--SVKLLETY  504 (541)
Q Consensus       445 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i------------------~~~--a~~il~~~  504 (541)
                      +.+|.++....            .++..|.+.|+++.|..++.+++++|                  |..  +..+++.|
T Consensus       478 ~~aL~~l~~~~------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~  545 (644)
T 2z6h_A          478 AGVLCELAQDK------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL  545 (644)
T ss_dssp             HHHHHHHHTSH------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCH------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHH
Confidence            99999987431            25778899999999999999999999                  544  67799999


Q ss_pred             CCCCC
Q 009184          505 WLDDE  509 (541)
Q Consensus       505 ~~~~~  509 (541)
                      |..+.
T Consensus       546 ~~~~~  550 (644)
T 2z6h_A          546 FRTEP  550 (644)
T ss_dssp             SCCSC
T ss_pred             HhCCC
Confidence            97763

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=5.4e-37  Score=325.16  Aligned_cols=404  Identities=15%  Similarity=0.134  Sum_probs=332.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCC-CCcHHHHHh---cCCHHHHHHhhcCC--CcHHHHHHHHHHHHHHhcC
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIER-SPPIEEVIR---SGVVPRFVEFLLRE--DYPQLQFEAAWALTNIASG  147 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~-~~~~~~~i~---~g~i~~Lv~lL~~~--~~~~i~~~a~~~L~~l~~~  147 (541)
                      ++|.++..++++++.++..|+..|+++.+... ++....+-+   ..+++.|+++|.++  + ++++..|+|+|.+++.+
T Consensus       331 gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~~  409 (810)
T 3now_A          331 GVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTLD  409 (810)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhCC
Confidence            35888888888888889999999999975322 111111111   23478899999988  5 89999999999999995


Q ss_pred             ChhHHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-----------------------------hhH---
Q 009184          148 TSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-----------------------------RCR---  194 (541)
Q Consensus       148 ~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----------------------------~~r---  194 (541)
                       ++.+..++ +.|++|.|+.+|+++++.++..|+|+|+||+.+.+                             ..+   
T Consensus       410 -~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~  488 (810)
T 3now_A          410 -AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRI  488 (810)
T ss_dssp             -HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHH
T ss_pred             -cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHH
Confidence             55555555 67999999999999999999999999999997541                             122   


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      +.+++.|+++.|+.++ .++++.++..++|+|.|++.+.+........|++|.|+.+|.++++..+..|+|+|++++...
T Consensus       489 ~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~  567 (810)
T 3now_A          489 TVLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITI  567 (810)
T ss_dssp             HHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCC
Confidence            5778899999999999 778999999999999999976555555566899999999999999999999999999998543


Q ss_pred             hHHHHH--HHHhCcHHHHHHhhCCCCh-hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184          275 NDKIQA--VIEAGVFPRLAEFLMHPSP-SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (541)
Q Consensus       275 ~~~~~~--~~~~g~l~~L~~lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (541)
                      +.....  ....|+++.|+.+|.++.. ..+..|+++|+|++.+++...+.+++.|+++.|+.+|.+. ++.++..|+|+
T Consensus       568 ~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~  646 (810)
T 3now_A          568 NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQC  646 (810)
T ss_dssp             CHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHH
T ss_pred             ChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHH
Confidence            321110  0113689999999986533 3456899999999999888888899999999999999998 99999999999


Q ss_pred             HHHHhcCChHHHHHHHhhchhhHHHHHh-cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHH-cCChHHH
Q 009184          352 VSNITAGNREQIQVIMHVHAFSIIAVIE-ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVI-QGCIKPL  429 (541)
Q Consensus       352 L~nl~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~-~~~i~~L  429 (541)
                      |+|++.+. +...           .+++ .|.++.|+.++.+++..++.+|+|+|.|++.+ ++..++.+++ .|++++|
T Consensus       647 L~NLa~~~-~~~~-----------~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~L  713 (810)
T 3now_A          647 LCNLVMSE-DVIK-----------MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDIL  713 (810)
T ss_dssp             HHHHTTSH-HHHH-----------HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHH
T ss_pred             HHHHhCCh-HHHH-----------HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHH
Confidence            99999864 4455           5554 79999999999999999999999999999985 5678888898 8999999


Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC---CCHHHHHHHHHHHHHhC
Q 009184          430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH---DNAEIYEKSVKLLETYW  505 (541)
Q Consensus       430 ~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~---~~~~i~~~a~~il~~~~  505 (541)
                      +.++.+++.+++..++++|.++...+..           ....+.+.|+++.|..|...   .+.++++.|...|+...
T Consensus       714 v~LL~s~d~~vq~~A~~aL~NL~~~s~e-----------~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          714 HTLIANPSPAVQHRGIVIILNMINAGEE-----------IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHTTCHH-----------HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHhCCHH-----------HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999975432           36778889999999999543   48999999999888765

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.6e-37  Score=313.71  Aligned_cols=361  Identities=15%  Similarity=0.173  Sum_probs=302.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc-HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP-IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~-~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      .+|.++..|.++++..+..|++.|++++..  ++. ...+++.|++|.|+++|++++ +.++..|+|+|.||+.++++++
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k   79 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            689999999999999999999999998754  444 458889999999999999988 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc--------CC-------Chh
Q 009184          153 KVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN--------GQ-------PKL  216 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~--------~~-------~~~  216 (541)
                      ..+++.|++|.|+++|. ++++++++.++|+|+||+.+ +..+..+.+ |++++|+.+|.        ..       .+.
T Consensus        80 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~  157 (457)
T 1xm9_A           80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccH
Confidence            99999999999999999 78999999999999999988 568888888 99999999992        11       356


Q ss_pred             hHHHHHHHHHHhhhcCCCCCChhhhh-chHHHHHHhhcc------CChhHHHHHHHHHHHhccCC---------------
Q 009184          217 SMLRNATWTLSNFCRGKPQPPFDQVS-PALPALAHLIHS------NDDEVLTDACWALSYLSDGT---------------  274 (541)
Q Consensus       217 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~---------------  274 (541)
                      .+++.++|+|+|||.+.......... |++|.|+.+|.+      .+..+...++++|.+++...               
T Consensus       158 ~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            78889999999999873222222233 999999999985      46678889999998886321               


Q ss_pred             -----------------------------------hHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCch
Q 009184          275 -----------------------------------NDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM  318 (541)
Q Consensus       275 -----------------------------------~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~  318 (541)
                                                         +...+.+.+.|+++.++.+|.+ .++.+++.|+++|+|++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               1112234556778899999965 4688999999999999987754


Q ss_pred             hH----HHHH-hcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC
Q 009184          319 QT----QCVI-EYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA  393 (541)
Q Consensus       319 ~~----~~~~-~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~  393 (541)
                      ..    +.++ +.|+++.|+.+|.++ +.+++++|+|+|+|++.+ + ..+           .++..|+++.|+++|..+
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~-~~~-----------~~i~~~~i~~Lv~lL~~~  383 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-P-LLH-----------RVMGNQVFPEVTRLLTSH  383 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-G-GGH-----------HHHHHHTHHHHHHTTTSC
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-H-HHH-----------HHHHHhhhHHHHHhccCC
Confidence            32    3344 689999999999999 999999999999999885 3 445           667778999999999986


Q ss_pred             ch------hHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHHh
Q 009184          394 EF------DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKV  454 (541)
Q Consensus       394 ~~------~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~  454 (541)
                      ++      ++...++++|.|++.. +++....+.+.|+++.|+.++.++ ++++...+.++|.+++..
T Consensus       384 ~~~~~~~~~v~~~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          384 TGNTSNSEDILSSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             CSCSTTHHHHHHHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence            43      6888999999999875 557788888999999999999998 899999999999988743

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.4e-35  Score=308.92  Aligned_cols=367  Identities=25%  Similarity=0.345  Sum_probs=324.7

Q ss_pred             cCCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           72 LENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        72 ~~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      .+.+|.+++.|.++ ++.++..|+++|.++++.. ......++..|+++.|+.+|.+++ +.++..|+|+|++++..+++
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~  206 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD  206 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCcc
Confidence            36899999999987 8999999999999998753 445667888999999999999887 99999999999999998889


Q ss_pred             HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  229 (541)
                      .+..+...|+++.|+.++.+.++.++..++|+|++++.+. +.. ......++++.|+.++ .+.++.++..++|+|.+|
T Consensus       207 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L  284 (530)
T 1wa5_B          207 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP-DWSVVSQALPTLAKLI-YSMDTETLVDACWAISYL  284 (530)
T ss_dssp             HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC-CHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999765 433 3445578999999999 677899999999999999


Q ss_pred             hcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184          230 CRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (541)
Q Consensus       230 ~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  308 (541)
                      +...+. .......+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus       285 ~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~a  364 (530)
T 1wa5_B          285 SDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT  364 (530)
T ss_dssp             HSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHH
Confidence            987532 2222335899999999999999999999999999998888888888999999999999999999999999999


Q ss_pred             HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-Ch--HHHHHHHhhchhhHHHHHhcCcHHH
Q 009184          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NR--EQIQVIMHVHAFSIIAVIEANIIGP  385 (541)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~~~~~~~~~~~~l~~~~~l~~  385 (541)
                      |++++.+++...+.+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+ .+  +...           .+++.|+++.
T Consensus       365 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~-----------~l~~~~~l~~  432 (530)
T 1wa5_B          365 ISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIR-----------YLVSQGCIKP  432 (530)
T ss_dssp             HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHH-----------HHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHH-----------HHHHCCCHHH
Confidence            9999998888888888999999999999988 899999999999999984 44  6777           8889999999


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          386 LVALLENAEFDIKKEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       386 L~~~l~~~~~~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      |+.++.+++++++..|+++|.+++..+..          .....+.+.|+++.|..++.++++++...+..+|.+++..
T Consensus       433 L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          433 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            99999999999999999999999874322          2456677889999999999999999999999999988754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=9.4e-36  Score=305.83  Aligned_cols=366  Identities=25%  Similarity=0.321  Sum_probs=322.5

Q ss_pred             CCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        73 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      +.+|.+++.|.++ ++.++..|+++|.++.... .+....+++.|++|.|+++|++++ +.++..|+++|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            4689999999998 8999999999999998753 455667788999999999999987 999999999999999988899


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  229 (541)
                      +..+++.|+++.|+.++.+ ++..++..++|+|++++.+. +..+.... .++++.|+.++ .+.+..++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999996 78999999999999999765 43333333 67899999999 677899999999999999


Q ss_pred             hcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 009184          230 CRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRT  308 (541)
Q Consensus       230 ~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~  308 (541)
                      +...+ ........+++|.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            98752 22233346899999999999999999999999999999888777778888999999999999999999999999


Q ss_pred             HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      |++++.+++...+.+++.|+++.|+.+|.++ ++.+|..|+|+|+|++.+ +++..+           .+++.|+++.|+
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~-----------~l~~~~~i~~L~  367 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIK-----------YLVELGCIKPLC  367 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHH-----------HHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHH-----------HHHHCCCHHHHH
Confidence            9999998888888888899999999999988 899999999999999985 677888           888999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          388 ALLENAEFDIKKEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       388 ~~l~~~~~~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      .++.+++++++..|+++|.+++..+..          .....+.+.|+++.|..++.+++.+++..++.+|.+++..
T Consensus       368 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          368 DLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             HGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            999999999999999999999874322          2345677889999999999988999999999999998853

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.3e-35  Score=309.12  Aligned_cols=366  Identities=24%  Similarity=0.321  Sum_probs=325.4

Q ss_pred             CCHHHHHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           73 ENLPVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        73 ~~l~~l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      +.+|.+++.|.+++ +.++..|+++|.++.+.. ......+++.|++|.|+.+|.+++ +.++..|+|+|++|+.+++..
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            68999999999877 999999999999998753 456677888999999999999987 999999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          152 TKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      +..+.+.|+++.|+.++ .++++.++..++|+|++++...+.... ....|+++.|+.++ .+.++.++..++|+|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF-EQTRPALPALARLI-HSNDEEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH-HHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999 568899999999999999987654333 34577899999999 7788999999999999999


Q ss_pred             cCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHH
Q 009184          231 RGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPALRT  308 (541)
Q Consensus       231 ~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al~~  308 (541)
                      .+.+.. ......+++|.|+.+|.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            775322 2334468999999999999999999999999999998888888899999999999999988 89999999999


Q ss_pred             HhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          309 VGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       309 L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      |+|++.+++.....+++.|+++.|+.+|.+. ++.++..|+|+|+|++.+ +++...           .+++.|+++.|+
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~-----------~l~~~~~i~~L~  420 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIK-----------YLVSEGCIKPLC  420 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHH-----------HHHHTTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHH-----------HHHHCCCHHHHH
Confidence            9999998888888899999999999999998 999999999999999985 788888           889999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhccCCCH----------HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          388 ALLENAEFDIKKEAAWAISNATSGGTH----------EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       388 ~~l~~~~~~v~~~a~~aL~nl~~~~~~----------~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      .++..++++++..++++|.+++..+..          .....+.+.|+++.|..+..++++++...+..+|..++..
T Consensus       421 ~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          421 DLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence            999999999999999999999864322          2466677889999999999999999999999999887754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.3e-35  Score=301.67  Aligned_cols=364  Identities=18%  Similarity=0.192  Sum_probs=302.5

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcC-ChhH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASG-TSEH  151 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~-~~~~  151 (541)
                      ..+|.+++.|.++++.++..|++.|++++... .+....+++.|+||.|+++|.+++ +.++..|+|+|.||+.+ ++++
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence            47999999999999999999999999998653 667788889999999999999988 99999999999999986 6999


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc-----------------CC
Q 009184          152 TKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN-----------------GQ  213 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~-----------------~~  213 (541)
                      +..+++.|+||.|+.+|.+ .+.+++++++++|+|++.. +..+..+.. +++++|+.++.                 ..
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999987 6889999999999999985 457777775 57999999762                 12


Q ss_pred             ChhhHHHHHHHHHHhhhcCCCC-CChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhccCChHH--------
Q 009184          214 PKLSMLRNATWTLSNFCRGKPQ-PPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDGTNDK--------  277 (541)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~-~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~~~~~--------  277 (541)
                      .++.++.+++|+|.||+...+. ..... ..|+++.|+.++++      .+...++.|+|+|.||+......        
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            3579999999999999987633 22222 35778899999874      46778999999999998652111        


Q ss_pred             -----------------HHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCCchh----HHHHHhcCchHHHHHh
Q 009184          278 -----------------IQAVIEAGVFPRLAEFLM-HPSPSVLIPALRTVGNIVTGDDMQ----TQCVIEYQALPCLLNL  335 (541)
Q Consensus       278 -----------------~~~~~~~g~l~~L~~lL~-~~~~~v~~~al~~L~nl~~~~~~~----~~~~~~~~~l~~L~~l  335 (541)
                                       ...+.+.++++.++.+|. +.++.+++.|+++|.|++.+....    ...+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             111233355678888995 567899999999999999876322    2244567899999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--------chhHHHHHHHHHHH
Q 009184          336 LSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--------EFDIKKEAAWAISN  407 (541)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--------~~~v~~~a~~aL~n  407 (541)
                      |.++ +..+++.|+|+|+||+.+..  .+           .++..|++|.|+.+|.++        ..+++..|+++|.|
T Consensus       364 L~s~-~~~v~~~A~~aL~nLs~~~~--~~-----------~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N  429 (584)
T 3l6x_A          364 LTNE-HERVVKAASGALRNLAVDAR--NK-----------ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE  429 (584)
T ss_dssp             GGCS-CHHHHHHHHHHHHHHHTTCS--CH-----------HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred             HcCC-CHHHHHHHHHHHHHHhCChh--HH-----------HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence            9999 89999999999999998643  23           455789999999999876        35789999999999


Q ss_pred             hccCCCHHHHHHHHHcCChHHHhhhcCCC--ChHHHHHHHHHHHHHHHhh
Q 009184          408 ATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       408 l~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l~~L~~l~~~~  455 (541)
                      ++.. +++..+.+.+.|+++.|+.++.+.  .+.++..+..+|.++....
T Consensus       430 L~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          430 VIAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             HHTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             HhcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence            9975 788899999999999999999986  7889999999999998643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.3e-33  Score=305.02  Aligned_cols=405  Identities=18%  Similarity=0.205  Sum_probs=339.6

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.++.+++.|.++++.++..|+++|.+++... ......+.+.|+++.|+.+|.+++ ..++..++.+|.+++.++++.+
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~  311 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  311 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHH
Confidence            67899999999999999999999999998763 445566668999999999999987 8999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          153 KVVIDHGAVPIFVKLLYSP-SDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      ..+.+.|+++.|+.++.+. ....++.++.+|.+++... ..+..+++.|+++.|+.++ .+.+..+++.++|+|.+|+.
T Consensus       312 ~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhc
Confidence            9999999999999999874 4566778999999999754 4788888999999999999 66788999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CC-hhhHHHHHHHH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-PSVLIPALRTV  309 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~-~~v~~~al~~L  309 (541)
                      ..+.  .....++++.|+.+|.+.+++++..++|+|++|+..++.....+++.|+++.|+.+|.+ .+ ..++..|+++|
T Consensus       390 ~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          390 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            7633  22347899999999999999999999999999999888888889999999999999976 33 48999999999


Q ss_pred             hHhhcCCch---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL  386 (541)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L  386 (541)
                      +||+.....   ....+...++++.|+.+|.+...+.++++|+|+|+|++.+... ..           .+.+.|+++.|
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~-----------~i~~~g~i~~L  535 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HA-----------PLREQGAIPRL  535 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HH-----------HHHHTTHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HH-----------HHHHCCCHHHH
Confidence            999876543   2346778999999999999883459999999999999986444 46           88899999999


Q ss_pred             HHHhhcCchhH----------------------HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184          387 VALLENAEFDI----------------------KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  444 (541)
Q Consensus       387 ~~~l~~~~~~v----------------------~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~  444 (541)
                      +.+|.++++++                      +..++.+|.+++.  ++.....+.+.|+++.|+.+|.++++.++..+
T Consensus       536 v~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a  613 (780)
T 2z6g_A          536 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVA  613 (780)
T ss_dssp             HHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence            99998765444                      4556666666664  44555667789999999999999999999999


Q ss_pred             HHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHH--------------------HHHHHHHh
Q 009184          445 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEK--------------------SVKLLETY  504 (541)
Q Consensus       445 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~--------------------a~~il~~~  504 (541)
                      +.+|.++...            ..++..|.+.|+++.|..|+.+++++|+..                    +..++..|
T Consensus       614 ~~aL~~L~~~------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l  681 (780)
T 2z6g_A          614 AGVLCELAQD------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL  681 (780)
T ss_dssp             HHHHHHHHTS------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcC------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHH
Confidence            9999998732            125778899999999999999999999544                    56677888


Q ss_pred             CCCCC
Q 009184          505 WLDDE  509 (541)
Q Consensus       505 ~~~~~  509 (541)
                      |..+.
T Consensus       682 ~~~~~  686 (780)
T 2z6g_A          682 FRTEP  686 (780)
T ss_dssp             -----
T ss_pred             HhCCC
Confidence            86553

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2e-34  Score=295.96  Aligned_cols=368  Identities=18%  Similarity=0.206  Sum_probs=303.7

Q ss_pred             hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Chh
Q 009184          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPR  192 (541)
Q Consensus       114 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~  192 (541)
                      ..+.+|.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+||.|+++|.++++.+++.|+|+|.||+.. +++
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            3678999999999988 99999999999999998999999999999999999999999999999999999999985 678


Q ss_pred             hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc------------------c
Q 009184          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------------------S  254 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~------------------~  254 (541)
                      .+..+.+.|++++|+.+|....+..+++.++++|++|+..... ......+++|.|+.++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999996557788999999999999986433 33334678999999762                  2


Q ss_pred             CChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCCch---------
Q 009184          255 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTGDDM---------  318 (541)
Q Consensus       255 ~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~~~~---------  318 (541)
                      .+++++..++++|.+|+..+++..+.+.+. |+++.|+.++.+      .+...++.|+++|.||+.....         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367899999999999998887766777775 777899999864      4667899999999999875311         


Q ss_pred             ----------------hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH---HHHHHHhhchhhHHHHHh
Q 009184          319 ----------------QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIAVIE  379 (541)
Q Consensus       319 ----------------~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~~~~~~l~~  379 (541)
                                      ....+.+.++++.|+.+|....++.+++.|+|+|.|++.+...   .++.          .+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~----------~v~~  353 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS----------ALRQ  353 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH----------HHTS
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH----------HHHH
Confidence                            1122334456788899996544899999999999999986522   2230          3446


Q ss_pred             cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC--------ChHHHHHHHHHHHHH
Q 009184          380 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--------DPRIVTVCLEGLENI  451 (541)
Q Consensus       380 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--------~~~~~~~~l~~L~~l  451 (541)
                      .+++|.|+.+|.+++.+++..|+|+|.|++.+...   +..+..|+++.|+.+|.+.        ..+++..++.+|.+|
T Consensus       354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~---~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL  430 (584)
T 3l6x_A          354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARN---KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV  430 (584)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH---HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999986432   2345789999999999876        357888999999999


Q ss_pred             HHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCC--CHHHHHHHHHHHHHhCCC
Q 009184          452 LKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~--~~~i~~~a~~il~~~~~~  507 (541)
                      +...+..           ...+.+.|++..|..|..+.  .+.+.+.|..+|..++..
T Consensus       431 ~a~~~~~-----------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          431 IAENLEA-----------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             HTTCHHH-----------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             hcCCHHH-----------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            8655442           55677899999999998764  899999999999998864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=284.24  Aligned_cols=328  Identities=17%  Similarity=0.172  Sum_probs=276.7

Q ss_pred             hhcCCHHHHHHhhcCC------------CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCH----------HHHHHhhcC
Q 009184           70 KKLENLPVMVAGVWSN------------DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVV----------PRFVEFLLR  127 (541)
Q Consensus        70 ~~~~~l~~l~~~L~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i----------~~Lv~lL~~  127 (541)
                      .+.+.+|.++++|+..            +++.+.+|+++|.+++++. .+..+...+.+++          +.+++++.+
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEWQEA  145 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence            3458999999999963            3799999999999999986 5666666677777          777888876


Q ss_pred             CC-cHH-----HHH-------HHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHHHHH
Q 009184          128 ED-YPQ-----LQF-------EAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-----------PSDDVREQAVWAL  183 (541)
Q Consensus       128 ~~-~~~-----i~~-------~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L  183 (541)
                      .. +.+     +++       +|+|+|.|++. ++++|+.+++.|+++.|+.+|..           .++.+++.|+|+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL  224 (458)
T 3nmz_A          146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL  224 (458)
T ss_dssp             TSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             hccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence            52 112     433       99999999977 59999999999999999999942           3478999999999


Q ss_pred             HHhhCCChhhHHHHH-hcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC--CCCChhhhhchHHHHHHhh-ccCChhH
Q 009184          184 GNIAGDSPRCRDLVL-SQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK--PQPPFDQVSPALPALAHLI-HSNDDEV  259 (541)
Q Consensus       184 ~nl~~~~~~~r~~i~-~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~l~~L~~lL-~~~d~~v  259 (541)
                      .|||.+++..+..+. ..|++++|+.+| .+.+++++..++|+|.||+...  .........|++|.|+.+| .+.+..+
T Consensus       225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v  303 (458)
T 3nmz_A          225 TNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST  303 (458)
T ss_dssp             HHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHH
T ss_pred             HHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHH
Confidence            999988876777665 456699999999 6788999999999999999852  2233444579999999975 5578899


Q ss_pred             HHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCCh----hhHHHHHHHHhHhhc---CCchhHHHHHhcCchHH
Q 009184          260 LTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSP----SVLIPALRTVGNIVT---GDDMQTQCVIEYQALPC  331 (541)
Q Consensus       260 ~~~a~~~L~~l~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~~~~~~~l~~  331 (541)
                      +..++.+|.+|+...++....+. ..|+++.|+.+|.+.+.    .++..|+++|.|++.   +++...+.+++.|+++.
T Consensus       304 ~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~  383 (458)
T 3nmz_A          304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT  383 (458)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence            99999999999985544444455 78999999999987654    489999999999997   78888889999999999


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184          332 LLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       332 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  411 (541)
                      |+.+|.+. +..++++|+|+|+|++.+++++.+           .+++.|+++.|+.++.+++.++++.|+|+|.|++..
T Consensus       384 Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~-----------~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          384 LLQHLKSH-SLTIVSNACGTLWNLSARNPKDQE-----------ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHH-----------HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHH-----------HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            99999998 899999999999999988899998           999999999999999999999999999999999986


Q ss_pred             C
Q 009184          412 G  412 (541)
Q Consensus       412 ~  412 (541)
                      .
T Consensus       452 ~  452 (458)
T 3nmz_A          452 R  452 (458)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=7.1e-33  Score=290.48  Aligned_cols=403  Identities=17%  Similarity=0.144  Sum_probs=337.5

Q ss_pred             CCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        73 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      +.++.+++.|.+ +++..+..|+..|+++...  ..+...+.+.|++|.|+++|++++ +.++..|+++|.+++..++..
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            468899999975 4899999999999998654  446778889999999999999988 999999999999999977788


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      +..+.+.|++|.|+.++.++++.++..++.+|.+++...++.+..+.+.|+++.++.++....+...+..++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888999999999999999999766677788889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      ...........++++.|+.++.+.+++++..++|+|.+++.......   ...|+++.|+.++.++++.++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            65444444457899999999999999999999999999997654321   123789999999999999999999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcCChH---HHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      ++.+++.....+.+.|+++.|+.+|.+. .++.++..|+++|+|++.+++.   ...           .+.+.|+++.|+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-----------~i~~~~~i~~L~  361 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN-----------AVRLHYGLPVVV  361 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH-----------HHHHTTCHHHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH-----------HHHHcCChhHHH
Confidence            9998888888899999999999999763 1478999999999999986433   345           677889999999


Q ss_pred             HHhhcCc-hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHH--------------------
Q 009184          388 ALLENAE-FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE--------------------  446 (541)
Q Consensus       388 ~~l~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~--------------------  446 (541)
                      .++.+++ +.++..++|+|.|++.+.  .....+.+.|+++.|+.++.+++++++..+.+                    
T Consensus       362 ~lL~~~~~~~v~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~  439 (529)
T 1jdh_A          362 KLLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC  439 (529)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHH
T ss_pred             HHhccccchHHHHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHH
Confidence            9999876 599999999999999743  33467889999999999998766666654444                    


Q ss_pred             --HHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          447 --GLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       447 --~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                        +|.++....            ..+..+.+.|+++.|..+..++++++...|...+..+..
T Consensus       440 ~~al~~L~~~~------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          440 TGALHILARDV------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             HHHHHHHTTSH------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCc------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence              444444321            124567779999999999999999999999998888753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.8e-32  Score=288.59  Aligned_cols=404  Identities=17%  Similarity=0.161  Sum_probs=341.3

Q ss_pred             CCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        73 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      +.++.+++.|.++ ++.++..|+..|+++...  ......+.+.|+++.|+++|++++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            3589999999875 899999999999987653  446778888999999999999988 999999999999999977788


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      +..+.+.|+++.|+.+|.++++.++..++.+|.+++...++.+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999987888899999999999999999666667888999999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.++++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6554444555789999999999999999999999999999764331   1123789999999999999999999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCC-chhHHHHHHHHHHHHhcCChH--HHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNY-KKSIKKEACWTVSNITAGNRE--QIQVIMHVHAFSIIAVIEANIIGPLVA  388 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~--~~~~~~~~~~~~~~~l~~~~~l~~L~~  388 (541)
                      ++.+++.....+.+.|+++.|+.+|.+.. .+.++..|+++|+|++...++  ..+.          .+.+.|+++.|++
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~----------~v~~~~~l~~L~~  359 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN----------AVRLHYGLPVVVK  359 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH----------HHHHTTHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH----------HHHHccChHHHHH
Confidence            99988888888999999999999998642 379999999999999975332  2330          4778899999999


Q ss_pred             HhhcCc-hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC----------------------hHHHHHHH
Q 009184          389 LLENAE-FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVCL  445 (541)
Q Consensus       389 ~l~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~----------------------~~~~~~~l  445 (541)
                      +|.+++ +.+++.|+|+|.|++.+.  .....+.+.|+++.|+.++...+                      .+++..++
T Consensus       360 lL~~~~~~~v~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~  437 (644)
T 2z6h_A          360 LLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCT  437 (644)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHH
T ss_pred             HhCccCchHHHHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHH
Confidence            999875 799999999999999853  33477889999999999987633                      45667778


Q ss_pred             HHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          446 EGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       446 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                      .+|.++.....            .+..+.+.|++..|..+..+.++++...|...+..+..
T Consensus       438 ~aL~~La~~~~------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          438 GALHILARDVH------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             HHHHHHTTSHH------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHH------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            88888775432            24567779999999999999999999999988777653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.7e-31  Score=290.40  Aligned_cols=402  Identities=17%  Similarity=0.162  Sum_probs=338.1

Q ss_pred             CCHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           73 ENLPVMVAGVWSN-DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        73 ~~l~~l~~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      +.++.+++.|.++ ++.++..|+.+|+++...  ..+...+.+.|+++.|+.+|++++ +.++..|+++|.+|+...++.
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            3688899999754 899999999999997654  445677888999999999999988 999999999999999987888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      +..+.+.|+++.|+.+|.+++..++..++.+|.+++...++.+..+...|+++.|+.++...........++.+|.+|+.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988888899989999999999999666666677888999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      ...........++++.|+.++.+.+..++..++|+|.+++......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6544444445789999999999999999999999999999765431   1123689999999999999999999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCCc-hhHHHHHHHHHHHHhcCChH---HHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYK-KSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      ++.+++.....+++.|+++.|+.+|.+..+ ..++..|+++|+||+...++   ...           .+...++++.|+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~-----------~v~~~~~l~~L~  494 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN-----------AVRLHYGLPVVV  494 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH-----------HHHHTTCHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH-----------HHHHcCCHHHHH
Confidence            999888888889999999999999986323 48999999999999875443   234           667889999999


Q ss_pred             HHhhcCch-hHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC----------------------hHHHHHH
Q 009184          388 ALLENAEF-DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD----------------------PRIVTVC  444 (541)
Q Consensus       388 ~~l~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~----------------------~~~~~~~  444 (541)
                      .+|.+++. .++..|+|+|+|++.+  +.....+.+.|+++.|+.+|.+.+                      .+++..+
T Consensus       495 ~lL~~~~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a  572 (780)
T 2z6g_A          495 KLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEAC  572 (780)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHH
Confidence            99998764 9999999999999973  444577889999999999987543                      3466677


Q ss_pred             HHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184          445 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       445 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~  505 (541)
                      +.+|.+|.... .           .+..+.+.|++..|..+..+.++++...|...|..+.
T Consensus       573 ~~aL~~La~~~-~-----------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          573 TGALHILARDI-H-----------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             HHHHHHHTTSH-H-----------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCh-h-----------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            78888776321 1           2456778999999999999999999999988777654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=9.8e-30  Score=248.58  Aligned_cols=274  Identities=19%  Similarity=0.176  Sum_probs=236.9

Q ss_pred             CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC----------CChhhHHHHHHHHHHhhhcCCC-CCCh
Q 009184          170 SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG----------QPKLSMLRNATWTLSNFCRGKP-QPPF  238 (541)
Q Consensus       170 ~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~----------~~~~~~~~~a~~~L~~l~~~~~-~~~~  238 (541)
                      .+......+|+|+|+|++.+ +++|+.+.+.|++++|+.+|..          ..++.+++.++|+|.|||.+.+ ....
T Consensus        43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~  121 (354)
T 3nmw_A           43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT  121 (354)
T ss_dssp             CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34456667899999999988 5799999999999999999931          2357899999999999998863 3222


Q ss_pred             h-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 009184          239 D-QVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPALRTVGNIVTG  315 (541)
Q Consensus       239 ~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al~~L~nl~~~  315 (541)
                      . ...|++|.|+.+|.+++++++..++|+|.+|+.. ++.....+.+.|+++.|+.+| .+.++.++..|+.+|+|++..
T Consensus       122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            2 2356799999999999999999999999999975 556778889999999999975 667889999999999999986


Q ss_pred             CchhHHHHH-hcCchHHHHHhhcCCCch----hHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          316 DDMQTQCVI-EYQALPCLLNLLSGNYKK----SIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       316 ~~~~~~~~~-~~~~l~~L~~lL~~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      ++.....+. ..|+++.|+.+|.+. ++    .+++.|+|+|.|++.   ++++..+           .+.+.|+++.|+
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~-----------~i~~~g~i~~Lv  269 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQ-----------ILRENNCLQTLL  269 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH-----------HHHTTTHHHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHH-----------HHHHcCCHHHHH
Confidence            665555555 789999999999876 43    589999999999997   6788888           899999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184          388 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       388 ~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~  457 (541)
                      .+|.+++.+++++|+|+|.|++.. ++++...+++.|+++.|+++|.+++++++..++++|.+|+...+.
T Consensus       270 ~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          270 QHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999864 678889999999999999999999999999999999999976433

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=3.2e-30  Score=252.04  Aligned_cols=275  Identities=18%  Similarity=0.152  Sum_probs=238.3

Q ss_pred             HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC----------CcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 009184           87 SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----------DYPQLQFEAAWALTNIASGTSEHTKVVI  156 (541)
Q Consensus        87 ~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~  156 (541)
                      ...+.+|+++|.++...  .+..+.+++.|+++.|+.+|..+          .++.++..|+|+|.|++.+++..+..+.
T Consensus        46 ~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34556899999999743  56778899999999999999521          1378999999999999998777887776


Q ss_pred             h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-
Q 009184          157 D-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGD-SPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-  233 (541)
Q Consensus       157 ~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-  233 (541)
                      . .|+||.|+.+|.++++++++.|+|+|+||+.. ++..+..+.+.|++++|+.+|..+.+..+++.++++|+||+... 
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            5 46699999999999999999999999999975 66789999999999999998756778899999999999999843 


Q ss_pred             CCCChhh-hhchHHHHHHhhccCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 009184          234 PQPPFDQ-VSPALPALAHLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPA  305 (541)
Q Consensus       234 ~~~~~~~-~~~~l~~L~~lL~~~d~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~a  305 (541)
                      ....... ..|++|.|+.+|.+.++    +++..++|+|.+++.   ..++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            3322333 58999999999987654    589999999999996   677788889999999999999999999999999


Q ss_pred             HHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184          306 LRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (541)
Q Consensus       306 l~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (541)
                      +++|+|++.+++++.+.+++.|+++.|+.+|.+. ++.+++.|+|+|.|++.+++..++
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~  341 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAKYK  341 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence            9999999988888888999999999999999998 999999999999999997776543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=6.2e-27  Score=220.38  Aligned_cols=241  Identities=28%  Similarity=0.421  Sum_probs=223.1

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      |.++.|+++|.+++ ++++..|+++|.+++...++.+..+++.|+++.|+.+|.++++.++..++++|++++.+.+..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999998 99999999999999998888999999999999999999999999999999999999999888999


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      .+.+.|+++.++.++ .++++.++..++|+|.+++... .........++++.|+.++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6788999999999999999754 33333445789999999999999999999999999999988


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88878899999999999999999999999999999999998888888899999999999999998 89999999999999


Q ss_pred             HhcCC
Q 009184          355 ITAGN  359 (541)
Q Consensus       355 l~~~~  359 (541)
                      ++...
T Consensus       239 l~~~~  243 (252)
T 4hxt_A          239 IKSGG  243 (252)
T ss_dssp             HHHTC
T ss_pred             HHcCC
Confidence            99853

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.95  E-value=4.2e-27  Score=223.84  Aligned_cols=236  Identities=16%  Similarity=0.167  Sum_probs=202.3

Q ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh
Q 009184          257 DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL  335 (541)
Q Consensus       257 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l  335 (541)
                      .+-+..|+..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++...+.+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3467788899999987544 5566888999999999 9999999999999999999999999888899999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHH
Q 009184          336 LSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE  415 (541)
Q Consensus       336 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~  415 (541)
                      |.++.+..+++.|+|+|+|++++++...+           .+.+.|+++.|+.+|.++++.++..|+|+|.+++.+ +++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~-----------~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~  200 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLL-----------QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPE  200 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGG
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHH-----------HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChH
Confidence            98643789999999999999999888888           899999999999999999999999999999999986 678


Q ss_pred             HHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCC-CHHHH
Q 009184          416 QIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD-NAEIY  494 (541)
Q Consensus       416 ~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~-~~~i~  494 (541)
                      .+..+++.|+++.|+.+|.+++++++..++.+|.+|+..++......+...+.+..++++     .++.++.++ +.++|
T Consensus       201 ~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~-----~~~~lq~~e~~~e~~  275 (296)
T 1xqr_A          201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH-----RCQLLQQHEEYQEEL  275 (296)
T ss_dssp             GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH-----HHHHHTTCGGGHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH-----HHHHccchHHHHHHH
Confidence            889999999999999999999999999999999999987654432211122446777774     478888776 89999


Q ss_pred             HHHHHHHHHhCCCCCC
Q 009184          495 EKSVKLLETYWLDDED  510 (541)
Q Consensus       495 ~~a~~il~~~~~~~~~  510 (541)
                      ++|..|+++||+++++
T Consensus       276 ~~~~~il~~~f~~~~~  291 (296)
T 1xqr_A          276 EFCEKLLQTCFSSPAD  291 (296)
T ss_dssp             HHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            9999999999976543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=5.1e-27  Score=221.13  Aligned_cols=239  Identities=36%  Similarity=0.551  Sum_probs=220.1

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      ..++.++.+|.+++ ++++..|+++|.++.+..++.+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            45889999999998 99999999999887776778888999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      .+.+.|+++.|+.+| .++++.++..++|+|.+++.+.+.. ......+++|.|+.++.++++.++..++|+|++++..+
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999886444 44556789999999999999999999999999999988


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                      +.....+.+.|+++.|+.+|.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.+. ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999998888888899999999999999998 99999999999999


Q ss_pred             Hhc
Q 009184          355 ITA  357 (541)
Q Consensus       355 l~~  357 (541)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=3e-26  Score=215.68  Aligned_cols=241  Identities=27%  Similarity=0.415  Sum_probs=222.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCC
Q 009184          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (541)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  237 (541)
                      |.++.|+.+|.+++++++..|+++|++++...+..+..+.+.|+++.|+.++ .+.+..++..++|+|.+++... ....
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            5689999999999999999999999999998888899999999999999999 6778999999999999999874 3334


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  317 (541)
                      .....++++.++.++.+++++++..++|+|.+++...+.....+.+.|+++.|+.++.++++.++..++++|++++.+.+
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            44457899999999999999999999999999998888888889999999999999999999999999999999999888


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI  397 (541)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  397 (541)
                      .....+.+.|+++.|+.++.++ ++.++..|+|+|+|++.+++...+           .+.+.|+++.|++++.++++++
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~-----------~l~~~~~i~~L~~ll~~~~~~v  228 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIK-----------AIVDAGGVEVLQKLLTSTDSEV  228 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHH-----------HHHHTTHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHCCCHHHHHHHHCCCcHHH
Confidence            8878899999999999999988 899999999999999998888888           8999999999999999999999


Q ss_pred             HHHHHHHHHHhccCC
Q 009184          398 KKEAAWAISNATSGG  412 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~  412 (541)
                      +..|+++|.|+....
T Consensus       229 ~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          229 QKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999999998654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.9e-26  Score=217.17  Aligned_cols=239  Identities=35%  Similarity=0.566  Sum_probs=217.7

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..++.+++.|++++++++..|++.|+++++. ..+..+.+++.|+++.|+++|++++ +.++..|+++|.+++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            4689999999999999999999999998886 3677888999999999999999998 9999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+.+.....+.+.|+++.|+.++ .+.+..++..++|+|.+++.+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988875448888999999999999 677899999999999999987


Q ss_pred             CCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          233 KPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       233 ~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      .+. .......+++|.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|+|
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            522 2233447899999999999999999999999999998888888889999999999999999999999999999999


Q ss_pred             hhc
Q 009184          312 IVT  314 (541)
Q Consensus       312 l~~  314 (541)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.8e-24  Score=220.56  Aligned_cols=322  Identities=10%  Similarity=0.120  Sum_probs=256.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHH-hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh--
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVI-RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE--  150 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~--  150 (541)
                      ..+.+.+.|.+++.+.+..|++.|..+...  ....+.+. +.|+++.|+++++...+..+.+.++.+|.|++...+.  
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence            456777788887777789999999988532  34444555 4678999999999633378999999999999984331  


Q ss_pred             ------------------------------------HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184          151 ------------------------------------HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (541)
Q Consensus       151 ------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (541)
                                                          .+..+.+.|++|.|+.++.++++.+++.++|+|.|++.+ +.+|
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R  491 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI  491 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence                                                355677899999999999999999999999999999977 5699


Q ss_pred             HHHHhcCChHHHHHhhcCCChh--hHHHHHHHHHHhhhcCC-CCCCh--hhhhchHHHHHHhhcc-CCh-----------
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKL--SMLRNATWTLSNFCRGK-PQPPF--DQVSPALPALAHLIHS-NDD-----------  257 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~--~~~~~a~~~L~~l~~~~-~~~~~--~~~~~~l~~L~~lL~~-~d~-----------  257 (541)
                      ..+++.|++++|+.++...+..  ..+..|+++|.+++... |...+  ....+++|.|+.+|.. +..           
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999544333  27899999999998653 21111  0114899999999983 221           


Q ss_pred             --hHHHHHHHHHHHhccCCh----HHHHHHHHh-CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhc----
Q 009184          258 --EVLTDACWALSYLSDGTN----DKIQAVIEA-GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY----  326 (541)
Q Consensus       258 --~v~~~a~~~L~~l~~~~~----~~~~~~~~~-g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~----  326 (541)
                        --...|+.+|.||+..++    +....++.. |+++.|..+|.+++..++..|+++++|++.......+.+.+.    
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              126799999999998762    334557774 999999999999999999999999999998555322234322    


Q ss_pred             --CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc-CcHHHHHHHhhc--CchhHHHHH
Q 009184          327 --QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA-NIIGPLVALLEN--AEFDIKKEA  401 (541)
Q Consensus       327 --~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~-~~l~~L~~~l~~--~~~~v~~~a  401 (541)
                        +.++.|+.++... +..+|.+|+|+|+|++..++...+           .+++. ++++.++.++..  ++.+++..+
T Consensus       652 ~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~-----------~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~  719 (778)
T 3opb_A          652 SLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAK-----------ELLTKKELIENAIQVFADQIDDIELRQRL  719 (778)
T ss_dssp             HHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHH-----------HHTTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             hhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHH-----------HHHHccccHHHHHHHHhccCCCHHHHHHH
Confidence              2388999999988 999999999999999887788777           88876 799999999999  899999999


Q ss_pred             HHHHHHhcc
Q 009184          402 AWAISNATS  410 (541)
Q Consensus       402 ~~aL~nl~~  410 (541)
                      +.++.|++.
T Consensus       720 ~~~l~NL~~  728 (778)
T 3opb_A          720 LMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999996

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.6e-23  Score=215.14  Aligned_cols=385  Identities=13%  Similarity=0.103  Sum_probs=291.7

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .++.+...+++  ..++..|+..|+++.+....... .+  ..+.+.++++|.+++ .+-+..|++.|..++. .++.+.
T Consensus       297 ~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~-si--~~La~~~~~~L~~~~-~~~~~~AvEgLaYLSl-~~~VKe  369 (778)
T 3opb_A          297 YLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCI-NL--KQLSEIFINAISRRI-VPKVEMSVEALAYLSL-KASVKI  369 (778)
T ss_dssp             HHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTC-CH--HHHHHHHHHHTTTCC-HHHHHHHHHHHHHHTT-SSHHHH
T ss_pred             HHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcC-cH--HHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC-CHHHHH
Confidence            34555666654  57888999999998876422211 11  126788899998876 6669999999999998 477777


Q ss_pred             HHHh-CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh--------------------------------------h
Q 009184          154 VVID-HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR--------------------------------------C  193 (541)
Q Consensus       154 ~i~~-~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~--------------------------------------~  193 (541)
                      .+.+ .|+++.|+.+++. .+..+...++.+|.|++...+.                                      .
T Consensus       370 ~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~  449 (778)
T 3opb_A          370 MIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN  449 (778)
T ss_dssp             HHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence            7775 5779999999985 7778899999999999863321                                      3


Q ss_pred             HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChh---HHHHHHHHHHHh
Q 009184          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDE---VLTDACWALSYL  270 (541)
Q Consensus       194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~---v~~~a~~~L~~l  270 (541)
                      +..+.+.|++++|+.++ .+.++.++..++|+|.+|+.....+......|+++.|+.++.+....   .+..|+++|.++
T Consensus       450 ~~~l~eaGvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          450 EKYILRTELISFLKREM-HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHTTTTTHHHHHHHHG-GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            45677899999999999 77889999999999999998766566666689999999999877543   789999999999


Q ss_pred             ccCChHHHHHHHH---hCcHHHHHHhhCC-CChh------------h-HHHHHHHHhHhhcCCc----hhHHHHHhc-Cc
Q 009184          271 SDGTNDKIQAVIE---AGVFPRLAEFLMH-PSPS------------V-LIPALRTVGNIVTGDD----MQTQCVIEY-QA  328 (541)
Q Consensus       271 ~~~~~~~~~~~~~---~g~l~~L~~lL~~-~~~~------------v-~~~al~~L~nl~~~~~----~~~~~~~~~-~~  328 (541)
                      +...+... .+-.   .|+++.|+.+|.. +...            . +.+|+.+|+|+++.++    .....++.. |+
T Consensus       529 lis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga  607 (778)
T 3opb_A          529 LIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY  607 (778)
T ss_dssp             HHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred             HhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence            84433211 1111   2889999999983 2211            1 6799999999999873    335667774 99


Q ss_pred             hHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHH-HHHHhhchhhHHHHHhc------CcHHHHHHHhhcCchhHHHHH
Q 009184          329 LPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI-QVIMHVHAFSIIAVIEA------NIIGPLVALLENAEFDIKKEA  401 (541)
Q Consensus       329 l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~~~~~~~~l~~~------~~l~~L~~~l~~~~~~v~~~a  401 (541)
                      ++.|..+|.++ +..+|++|+|+++|++.. ++.+ +           .+.+.      +-++.|+.++..++.++|..|
T Consensus       608 ~~~L~~LL~s~-n~~VrrAA~elI~NL~~~-~e~i~~-----------k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AA  674 (778)
T 3opb_A          608 WSTIENLMLDE-NVPLQRSTLELISNMMSH-PLTIAA-----------KFFNLENPQSLRNFNILVKLLQLSDVESQRAV  674 (778)
T ss_dssp             HHHHHHGGGCS-SHHHHHHHHHHHHHHHTS-GGGTGG-----------GTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHHhCC-cHHHHH-----------HHHhhcCchhhccHHHHHHHHcCCCHHHHHHH
Confidence            99999999998 899999999999999984 4443 3           33321      248899999999999999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHc-CChHHHhhhcCC--CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcch
Q 009184          402 AWAISNATSGGTHEQIKFLVIQ-GCIKPLCDLLVC--PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG  478 (541)
Q Consensus       402 ~~aL~nl~~~~~~~~~~~l~~~-~~i~~L~~lL~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  478 (541)
                      +|+|.|++.. .+..+..+++. ++++.++.++..  ++++++..++.++.++..+.+...     +...+....+....
T Consensus       675 agALAnLts~-~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~-----~~~~~~~~~~~~~l  748 (778)
T 3opb_A          675 AAIFANIATT-IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNG-----TNEVYPLLQENQKL  748 (778)
T ss_dssp             HHHHHHHHHH-CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTT-----TTSCCHHHHSCHHH
T ss_pred             HHHHHHhcCC-ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCC-----ChHHHHHHhcChHH
Confidence            9999999753 56667788876 799999999998  899999999999999997653322     12234555545555


Q ss_pred             HHHHHHHh
Q 009184          479 LEKIESLQ  486 (541)
Q Consensus       479 ~~~l~~L~  486 (541)
                      .+.+..+.
T Consensus       749 ~~~l~~~l  756 (778)
T 3opb_A          749 KDALNMSL  756 (778)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55665553

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=1.4e-22  Score=184.96  Aligned_cols=199  Identities=38%  Similarity=0.567  Sum_probs=185.1

Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (541)
Q Consensus       241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  320 (541)
                      ..+..+.|..+|.+++++++..++|+|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|+|++.+++...
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            36778899999999999999999999999998888888889999999999999999999999999999999999888888


Q ss_pred             HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184          321 QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE  400 (541)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~  400 (541)
                      ..+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+           .+++.|+++.|++++.+++++++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~-----------~~~~~~~i~~L~~ll~~~~~~v~~~  157 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ-----------AVIDAGALPALVQLLSSPNEQILQE  157 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH-----------HHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHH-----------HHHHcCcHHHHHHHHcCCCHHHHHH
Confidence            8899999999999999999 999999999999999998888888           8899999999999999999999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184          401 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  452 (541)
Q Consensus       401 a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~  452 (541)
                      |+++|.|++.. +++....+.+.|+++.|+.++.+++++++..++.+|.+|.
T Consensus       158 a~~aL~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          158 ALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            99999999985 5677788889999999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=1.4e-22  Score=184.98  Aligned_cols=199  Identities=34%  Similarity=0.529  Sum_probs=181.4

Q ss_pred             hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 009184          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC  193 (541)
Q Consensus       114 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  193 (541)
                      ..+..+.|+.+|++++ +.++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..|+|+|+|++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4678999999999988 999999999999999888999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184          194 RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       194 r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  272 (541)
                      +..+.+.|+++.|+.+| .++++.++..++|+|.+++.+.+. .......+++|.|+.++.+++++++..++|+|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999 777899999999999999986532 2233457899999999999999999999999999999


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                      .++.....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            878888889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=4.9e-22  Score=188.89  Aligned_cols=188  Identities=14%  Similarity=0.143  Sum_probs=169.9

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~  209 (541)
                      .+-+..|+..|.+++. +.++...+...|++|.|+. +|.++++.+++.|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678899999999998 5678888889999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcCCChhhHHHHHHHHHHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009184          210 LNGQPKLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (541)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~  288 (541)
                      |..+++..+++.++|+|++++++.+. .......+++|.|+.+|.+++..++..++|+|++++.++++....+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            96556789999999999999998633 33344478999999999999999999999999999988888889999999999


Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCCchh
Q 009184          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ  319 (541)
Q Consensus       289 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~  319 (541)
                      .|+.+|.+++..++..|+++|++++.+.+..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence            9999999999999999999999999885433

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.84  E-value=2.1e-20  Score=169.83  Aligned_cols=197  Identities=19%  Similarity=0.150  Sum_probs=170.6

Q ss_pred             CHHHHHHhhcCCCcH--HHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184          117 VVPRFVEFLLREDYP--QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~--~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (541)
                      .+|.|+++|.+++ +  +++..|+++|.+++.++++.+..+++.|+||.|+++|.++++++++.|+|+|.||+.++++.+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            4899999999988 6  899999999999999889999999999999999999999999999999999999999888899


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc----------------cCChh
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----------------SNDDE  258 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----------------~~d~~  258 (541)
                      ..+.+.|++++|+.+|..+.+..+++.++.+|++|+...... .....+++|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            999999999999999955678899999999999999765433 2334567898887653                13678


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcC
Q 009184          259 VLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAEFLMH------PSPSVLIPALRTVGNIVTG  315 (541)
Q Consensus       259 v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~------~~~~v~~~al~~L~nl~~~  315 (541)
                      ++.++..+|.+++..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776777777765 778999999854      2567899999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=6.4e-20  Score=166.65  Aligned_cols=197  Identities=16%  Similarity=0.187  Sum_probs=166.0

Q ss_pred             CCHHHHHHhhcCCCH--HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           73 ENLPVMVAGVWSNDS--GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      ..+|.+++.|.++++  +++..|++.++++.... .+....+++.|++|.|+++|++++ +++|..|+|+|.||+.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            378999999999988  88999999999987653 556778889999999999999988 99999999999999998899


Q ss_pred             HHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---------------CCC
Q 009184          151 HTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---------------GQP  214 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---------------~~~  214 (541)
                      ++..+.+.|+||.|+++|. +++.+++++++.+|+|++.... .+..+.+. ++++|+.++.               ...
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHhc-cHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999997 5789999999999999997655 67777664 6898887652               113


Q ss_pred             hhhHHHHHHHHHHhhhcCC-CCCChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 009184          215 KLSMLRNATWTLSNFCRGK-PQPPFDQ-VSPALPALAHLIHS------NDDEVLTDACWALSYLSDG  273 (541)
Q Consensus       215 ~~~~~~~a~~~L~~l~~~~-~~~~~~~-~~~~l~~L~~lL~~------~d~~v~~~a~~~L~~l~~~  273 (541)
                      ++.++.+++++|.||+... ..+.... ..|+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6789999999999999865 3333333 35788999999974      2567899999999999854

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.77  E-value=1.5e-17  Score=183.95  Aligned_cols=354  Identities=13%  Similarity=0.135  Sum_probs=259.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV  154 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~  154 (541)
                      -+.+++.|.++++.++..++.++..++........     .++++.|++.+++++ +.++..++.+|..++...+.....
T Consensus        92 k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~  165 (852)
T 4fdd_A           92 KSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDS  165 (852)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhch
Confidence            35566778888899999999999999876411111     457999999999888 899999999999998754433211


Q ss_pred             HH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          155 VI----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       155 i~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      -.    -..+++.|++++.++++.+|..|+++|++++...+....... ..+++.++..+ .++++.++..++++|..++
T Consensus       166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~  243 (852)
T 4fdd_A          166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVMLL  243 (852)
T ss_dssp             CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence            00    123577888888889999999999999998865442111111 13567777777 6788999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhh-----------CC
Q 009184          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFL-----------MH  296 (541)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL-----------~~  296 (541)
                      ...+..-.....++++.+..++.+.++.++..+++.+..++...... . .+..   .+++.++..+           .+
T Consensus       244 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d  321 (852)
T 4fdd_A          244 EVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-D-VLVRHLPKLIPVLVNGMKYSDIDIILLKGD  321 (852)
T ss_dssp             HHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-H-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred             HhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-H-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence            87543222344678888889998889999999999999998654211 1 1221   4566666666           33


Q ss_pred             -----------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHH
Q 009184          297 -----------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV  365 (541)
Q Consensus       297 -----------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  365 (541)
                                 .++.++..|..+|+.++...+..   ++ ..+++.+..++.+. ++.+|..|++++++++.+..+.+. 
T Consensus       322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~-  395 (852)
T 4fdd_A          322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMI-  395 (852)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHG-
T ss_pred             cccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHH-
Confidence                       34568999999999998654422   11 24678888888888 899999999999999997766554 


Q ss_pred             HHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHH
Q 009184          366 IMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCL  445 (541)
Q Consensus       366 ~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l  445 (541)
                                ..+ .++++.++..+.++++.||..|+|++++++........ .-.-.++++.|+..+.++++.++..++
T Consensus       396 ----------~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~~vr~~a~  463 (852)
T 4fdd_A          396 ----------PYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNKRVQEAAC  463 (852)
T ss_dssp             ----------GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             ----------HHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence                      322 36889999999999999999999999998763111000 001124678888888888999999999


Q ss_pred             HHHHHHHHhhH
Q 009184          446 EGLENILKVGE  456 (541)
Q Consensus       446 ~~L~~l~~~~~  456 (541)
                      ++|.++.....
T Consensus       464 ~aL~~l~~~~~  474 (852)
T 4fdd_A          464 SAFATLEEEAC  474 (852)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHHHHHhh
Confidence            99999987544

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.77  E-value=5.5e-17  Score=171.80  Aligned_cols=344  Identities=11%  Similarity=0.122  Sum_probs=247.1

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCR  194 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r  194 (541)
                      .++|.+..++++++ +.+|..|+.+|+.++.....   ......+++.++.++.++++.++..|+++|+.++...+ ..+
T Consensus       242 ~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  317 (588)
T 1b3u_A          242 LVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR  317 (588)
T ss_dssp             HTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred             HHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence            35666666666665 77777777777777652111   11223467888999999999999999999999985432 222


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      .......+++.+..++ .+.+..++..++++|..++..-..  ......++|.+..++.+++++++..++.++..+....
T Consensus       318 ~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          318 ENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence            1112233566777777 778899999999999999864211  1223567889999999889999999999988877432


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                      ...   .....+++.+..++.+.++.++..++.+++.++......   .....+++.+..++.+. +..+|..|+.+++.
T Consensus       395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~  467 (588)
T 1b3u_A          395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKK  467 (588)
T ss_dssp             CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHH
Confidence            211   122357888889999999999999999999987532211   12234678889999888 89999999999999


Q ss_pred             HhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC
Q 009184          355 ITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  434 (541)
Q Consensus       355 l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~  434 (541)
                      ++......              .....++|.|..++.++++.+|..++++++.++.....+    .....+++.|..+++
T Consensus       468 l~~~~~~~--------------~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~  529 (588)
T 1b3u_A          468 LVEKFGKE--------------WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAG  529 (588)
T ss_dssp             HHHHHCHH--------------HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGG
T ss_pred             HHHHhCch--------------hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCC
Confidence            98731111              112357888888888889999999999999997632111    123468899999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184          435 CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       435 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~  505 (541)
                      +++++++..++++|..+.......          +.    ....+..|..+...++++|+..|...+..+-
T Consensus       530 d~~~~Vr~~a~~~l~~l~~~~~~~----------~~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          530 DPVANVRFNVAKSLQKIGPILDNS----------TL----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGSCHH----------HH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             CCCchHHHHHHHHHHHHHHHhchh----------hh----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            999999999999999988643111          11    1334566777889999999999999988653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.76  E-value=1.5e-18  Score=191.89  Aligned_cols=358  Identities=14%  Similarity=0.154  Sum_probs=255.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHH-H---HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEE-V---IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~---i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~  148 (541)
                      +.++.+++.+.++++..+..++.+|..++... .+.... .   .-..++|.|++++++++ +.++..|+++|.++....
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~~~  205 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFIISR  205 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcc
Confidence            36788888999999999999999999987642 111110 0   01346888888888877 999999999999888754


Q ss_pred             hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (541)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~  228 (541)
                      +......+ ..+++.++.++.++++.++..++++|+.++...+..-...+. ++++.++..+ .+.++.++..+++++..
T Consensus       206 ~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~  282 (852)
T 4fdd_A          206 TQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT-QDQDENVALEACEFWLT  282 (852)
T ss_dssp             CHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHH
T ss_pred             cHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc-cCCcHHHHHHHHHHHHH
Confidence            43221111 246788888899999999999999999999766543222222 3567777777 67789999999999999


Q ss_pred             hhcCCCCCC--hhhhhchHHHHHHhhc-----------c-----------CChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009184          229 FCRGKPQPP--FDQVSPALPALAHLIH-----------S-----------NDDEVLTDACWALSYLSDGTNDKIQAVIEA  284 (541)
Q Consensus       229 l~~~~~~~~--~~~~~~~l~~L~~lL~-----------~-----------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~  284 (541)
                      +++......  ......++|.++..+.           .           .+..++..+..++..++....+.   ++ .
T Consensus       283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~  358 (852)
T 4fdd_A          283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-P  358 (852)
T ss_dssp             HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-H
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-H
Confidence            987631111  1123466777777762           2           12346778888888887543221   22 2


Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHH
Q 009184          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQ  364 (541)
Q Consensus       285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  364 (541)
                      .+++.+...+.++++.++..|++++++++.+....... .-.++++.++.++.++ ++.||..|+|++++++........
T Consensus       359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~  436 (852)
T 4fdd_A          359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPP  436 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchH
Confidence            46788888889999999999999999999887654432 2346889999999988 999999999999999873221111


Q ss_pred             HHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184          365 VIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  444 (541)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~  444 (541)
                                 ...-.++++.|+..+.+.++.++..|+++|.+++.........++  .++++.|..+++..+.+....+
T Consensus       437 -----------~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~  503 (852)
T 4fdd_A          437 -----------DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLIL  503 (852)
T ss_dssp             -----------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHH
Confidence                       111225788899999888999999999999999864332222222  3567778888877677666677


Q ss_pred             HHHHHHHHHh
Q 009184          445 LEGLENILKV  454 (541)
Q Consensus       445 l~~L~~l~~~  454 (541)
                      ++++..+...
T Consensus       504 ~~ai~~l~~~  513 (852)
T 4fdd_A          504 YDAIGTLADS  513 (852)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7888888754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.74  E-value=3.1e-16  Score=166.04  Aligned_cols=381  Identities=12%  Similarity=0.086  Sum_probs=281.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .++.+...+..+++.++..|+..+..+....  +.  ......++|.|..++++++ +.++..|+.+|..++...+..  
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~~--~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--EL--DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--CH--HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cH--HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence            3455566667888999999999999887642  11  1223567899999998887 899999999999988643321  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                       .....++|.+..++.+++..+|..++.+|+.++.....   .......++.++.++ .++++.++..++++|..++...
T Consensus       238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence             11234678888999999999999999999999743211   112233578888888 7788999999999999999875


Q ss_pred             CCCCh--hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          234 PQPPF--DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       234 ~~~~~--~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      +....  .....++|.+..++.+.++.++..+++++..++..-...   .....+++.+..++.++++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            33211  345778899999999999999999999999987432211   1223578889999999999999999999998


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALL  390 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l  390 (541)
                      ++......   .....+++.+..++.+. +..+|..++.+++.++.. ..+.               ....+++.++..+
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~---------------~~~~l~~~l~~~l  450 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF---------------FDEKLNSLCMAWL  450 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG---------------CCHHHHHHHHHGG
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHHH---------------HHHHHHHHHHHHh
Confidence            87643321   12235778888888887 899999999999999752 1111               1124678888999


Q ss_pred             hcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhh
Q 009184          391 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT  470 (541)
Q Consensus       391 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  470 (541)
                      .+++..+|..|+.++..++.....+.    ....+++.|..++.+++..++..++.++..+........         |.
T Consensus       451 ~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~---------~~  517 (588)
T 1b3u_A          451 VDHVYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------TT  517 (588)
T ss_dssp             GCSSHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------HH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH---------HH
Confidence            98899999999999999976433321    234578888888888899999999999998876532211         12


Q ss_pred             hHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       471 ~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                           ...+..|..+..+++++|+..+.+.+..++.
T Consensus       518 -----~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          518 -----KHMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             -----HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             -----HHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence                 2345667777788889999988888887764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.73  E-value=1.3e-15  Score=160.66  Aligned_cols=353  Identities=16%  Similarity=0.174  Sum_probs=256.5

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..++.+++.+.+++...+..+...+..++..  .+..  .  .-+++.+.+-|++++ +.++..|+.+|+++..  ++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~--~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDM--A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHH--H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchH--H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence            3678899999999999998888888877653  1111  1  224678888888888 9999999999999863  5544


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..+     ++.+.+++.++++.+|..|++++.+++...++.   +...+.++.+..+| .++++.++..|+++|..++..
T Consensus       120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            433     578899999999999999999999998765542   22245678888888 788999999999999999987


Q ss_pred             CCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          233 KPQP-PFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       233 ~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      .+.. ......+.++.|+..+...++..+..++.++..++..++...     ..+++.+..++++.++.++..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6533 233445667778888878888888899999988875544332     2567888889999999999999999999


Q ss_pred             hhcC---CchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHH----h--hc-------hhhH-
Q 009184          312 IVTG---DDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIM----H--VH-------AFSI-  374 (541)
Q Consensus       312 l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~----~--~~-------~~~~-  374 (541)
                      +...   +++....+. ..+.+.|+.++. + ++.+|..|+.+|+.++...++.+....    .  .+       ..+. 
T Consensus       266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L  342 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM  342 (591)
T ss_dssp             SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred             HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence            8753   233333332 355677776654 5 889999999999999864333221100    0  00       1111 


Q ss_pred             HHHHhc----CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHH
Q 009184          375 IAVIEA----NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLEN  450 (541)
Q Consensus       375 ~~l~~~----~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~  450 (541)
                      ..+.+.    .+++.|..++.+.+.+++..++++|++++... +...     ..+++.|++++...+..++..++.++..
T Consensus       343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~  416 (591)
T 2vgl_B          343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRD  416 (591)
T ss_dssp             HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            111222    25666777777789999999999999999853 3222     2367899999998888888888888888


Q ss_pred             HHHhhHh
Q 009184          451 ILKVGEA  457 (541)
Q Consensus       451 l~~~~~~  457 (541)
                      ++...+.
T Consensus       417 ii~~~p~  423 (591)
T 2vgl_B          417 IFRKYPN  423 (591)
T ss_dssp             HHHHSCS
T ss_pred             HHHHCcc
Confidence            8765443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.73  E-value=4.8e-15  Score=150.44  Aligned_cols=369  Identities=16%  Similarity=0.156  Sum_probs=273.0

Q ss_pred             CCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC-CcHHHHHHHHHHHHHHhcCChh
Q 009184           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE-DYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        73 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      +.++.+.+.+.+ .-.+.|..|+..|+.+....    . .-+.+++++.|+..|+.+ ++.++...++..|.++....++
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y----~-~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~   95 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY----R-LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE   95 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT----T-THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh----H-HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence            578999999986 45789999999999986432    1 233456799999999875 3488888999999988775432


Q ss_pred             -----------------HHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHhc-CChHHHHHhh
Q 009184          151 -----------------HTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR-CRDLVLSQ-GGLVPLLAQL  210 (541)
Q Consensus       151 -----------------~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~~~-g~i~~Ll~~l  210 (541)
                                       ..+.+. +.+.++.|+.+|++.+..+|..++.+|..++...+. .++.++.. ++++.|+.+|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence                             233443 467899999999999999999999999999987776 77777744 8899999999


Q ss_pred             cCCChhhHHHHHHHHHHhhhcCCCCCCh-hhhhchHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184          211 NGQPKLSMLRNATWTLSNFCRGKPQPPF-DQVSPALPALAHLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAG  285 (541)
Q Consensus       211 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~l~~L~~lL~~~d----~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  285 (541)
                       ++..+.++..++.+|.+|+.+.+..+. ....++++.|+.++..+.    ..+..+|+.++.+|...+..+...+.+.|
T Consensus       176 -~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          176 -ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             -GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             -hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence             677889999999999999999854443 445799999999998654    36899999999999999998888899999


Q ss_pred             cHHHHHHhhCCCChh------hHH---HHHHHHhHhhcCCc------hhHHHHHhcCchHHHHHhhcCCC-chhHHHHHH
Q 009184          286 VFPRLAEFLMHPSPS------VLI---PALRTVGNIVTGDD------MQTQCVIEYQALPCLLNLLSGNY-KKSIKKEAC  349 (541)
Q Consensus       286 ~l~~L~~lL~~~~~~------v~~---~al~~L~nl~~~~~------~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~a~  349 (541)
                      .++.|..+|..+...      ...   .++.++.-++..+.      .....+.++|+++.|++++.... ...++.+|+
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            999999999754321      122   25666766666522      34457789999999999987642 567999999


Q ss_pred             HHHHHHhcCChHHHHHHHhhchhhHHHHHhcC---------cHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHH
Q 009184          350 WTVSNITAGNREQIQVIMHVHAFSIIAVIEAN---------IIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKF  419 (541)
Q Consensus       350 ~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~---------~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~  419 (541)
                      .+++.+.++++....           .+.+..         ++..|+.++.+ ...++|..|+.++..+..+. .+....
T Consensus       335 ~tla~~irgN~~~Q~-----------~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~  402 (651)
T 3grl_A          335 NTVSEVIRGCQVNQD-----------YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGE  402 (651)
T ss_dssp             HHHHHHHTTCHHHHH-----------HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             HHHHHHHhCCHHHHH-----------HHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHH
Confidence            999999999888776           544322         33334444444 35899999999999999864 333333


Q ss_pred             HHHc----C------Ch---HHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhh
Q 009184          420 LVIQ----G------CI---KPLCDLLVCPDPRIVTVCLEGLENILKVGEAEK  459 (541)
Q Consensus       420 l~~~----~------~i---~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~  459 (541)
                      ++..    .      .+   ..|+.-+-+.|+.-.-.+.-++.+++...+..|
T Consensus       403 i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K  455 (651)
T 3grl_A          403 IVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQK  455 (651)
T ss_dssp             HHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHH
Confidence            3332    0      11   123444445566544445567777777665544

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=2e-14  Score=145.95  Aligned_cols=414  Identities=13%  Similarity=0.136  Sum_probs=291.0

Q ss_pred             CCHHHHHHhhcC--CCHHHHHHHHHHHHHHHccCCCC----------------cHHHHH-hcCCHHHHHHhhcCCCcHHH
Q 009184           73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSP----------------PIEEVI-RSGVVPRFVEFLLREDYPQL  133 (541)
Q Consensus        73 ~~l~~l~~~L~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~i-~~g~i~~Lv~lL~~~~~~~i  133 (541)
                      .+++.++..|+.  .|.++...++..|..+++....+                ..+.++ +.+.++.|+.+|++.+ ..+
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~v  138 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FHV  138 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HHH
Confidence            478999999986  57888888999998888754221                123444 4678999999999888 999


Q ss_pred             HHHHHHHHHHHhcCChh-HHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc
Q 009184          134 QFEAAWALTNIASGTSE-HTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (541)
Q Consensus       134 ~~~a~~~L~~l~~~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~  211 (541)
                      +..++.+|..++...++ ..+.+.. .++++.|+.+|+++.+.+|..++..|.+++.++++.++.+.-.|+++.|+.++.
T Consensus       139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~  218 (651)
T 3grl_A          139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT  218 (651)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999998877 6666775 499999999999999999999999999999999999999988899999999994


Q ss_pred             CCC---hhhHHHHHHHHHHhhhcCCC-CCChhhhhchHHHHHHhhccCChh------HHHH---HHHHHHHhccC-----
Q 009184          212 GQP---KLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDE------VLTD---ACWALSYLSDG-----  273 (541)
Q Consensus       212 ~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~------v~~~---a~~~L~~l~~~-----  273 (541)
                      ...   ...+...++.++.+|.+.++ +.......+++|.|.+++..+++.      ...+   ++.++.-++..     
T Consensus       219 ~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~  298 (651)
T 3grl_A          219 EEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPG  298 (651)
T ss_dssp             HHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred             hcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            322   34678999999999999973 444555678999999998754321      2333   44455555433     


Q ss_pred             -ChHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCCchhHHHHHhcC---------chHHHHHhhcCCCc
Q 009184          274 -TNDKIQAVIEAGVFPRLAEFLMHP--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQ---------ALPCLLNLLSGNYK  341 (541)
Q Consensus       274 -~~~~~~~~~~~g~l~~L~~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~---------~l~~L~~lL~~~~~  341 (541)
                       ...+...+.+.|++..+++++..+  ...++..|+.+++.+..+++...+.+....         ++..|+.++.+...
T Consensus       299 ~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~  378 (651)
T 3grl_A          299 ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP  378 (651)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence             123456688899999999998765  567899999999999999987666654322         44445555666546


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc----------C---cHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184          342 KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA----------N---IIGPLVALLENAEFDIKKEAAWAISNA  408 (541)
Q Consensus       342 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~----------~---~l~~L~~~l~~~~~~v~~~a~~aL~nl  408 (541)
                      ..+|.+|+.++..+..++++...           .+...          +   .-..|+..+.+.|+--.-.|+.++.++
T Consensus       379 ~~lR~Aa~~cl~ay~~~N~~~Q~-----------~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hl  447 (651)
T 3grl_A          379 FVLRCAVLYCFQCFLYKNQKGQG-----------EIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHA  447 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHH-----------HHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHH-----------HHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHH
Confidence            88999999999999998876544           22211          0   112345556666765556688888888


Q ss_pred             ccCCCHHHHHHHHH--------c---CChHHHhhhcCC-CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhc
Q 009184          409 TSGGTHEQIKFLVI--------Q---GCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDA  476 (541)
Q Consensus       409 ~~~~~~~~~~~l~~--------~---~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~  476 (541)
                      ... +++....+..        .   ..+..+..+|.. .++.+....|..|..-+.-+          ...+..++.+.
T Consensus       448 l~~-n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~----------p~AV~dFL~~~  516 (651)
T 3grl_A          448 LQE-NATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNC----------PIAVTHFLHNS  516 (651)
T ss_dssp             HTT-CHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTC----------HHHHHHHHHST
T ss_pred             HcC-CHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCC----------hHHHHHHHcCC
Confidence            885 4444333322        1   114444555543 44554444444333333322          33456777777


Q ss_pred             chHHHHHHHh-cC-C--CHHHHHHHHHHHHHhCCCCC
Q 009184          477 EGLEKIESLQ-TH-D--NAEIYEKSVKLLETYWLDDE  509 (541)
Q Consensus       477 ~~~~~l~~L~-~~-~--~~~i~~~a~~il~~~~~~~~  509 (541)
                      ..++.|.+.. ++ .  +.-|+-.+.-++--+|....
T Consensus       517 s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~  553 (651)
T 3grl_A          517 ANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFND  553 (651)
T ss_dssp             THHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             chHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccC
Confidence            7788887654 22 2  23467777777776555433

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.68  E-value=1.1e-15  Score=161.34  Aligned_cols=388  Identities=15%  Similarity=0.151  Sum_probs=251.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .++.+.+.|.++++.++..|++.+.++..   ....+     .+++.+.+++.+++ +.+|..|++++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            56677777888999999888888776631   22222     24778999999887 99999999999999987665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                         +.++++.|..+|.++++.++..|+++|+.++.+.+..+...+..+.+..|+..+ ...++-.+..++.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987764211111122456677776 3456667777777777776332


Q ss_pred             CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184          234 PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (541)
Q Consensus       234 ~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  310 (541)
                          ......+++.+..++++.++.|+..|++++.++...   +++..+.+. ..+.+.|+.++. +++.++..|+.+|+
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence                233467888899999999999999999999998742   233333333 245666776654 77888888888888


Q ss_pred             HhhcCCchh-----------------H-HHHH-------hc----CchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184          311 NIVTGDDMQ-----------------T-QCVI-------EY----QALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (541)
Q Consensus       311 nl~~~~~~~-----------------~-~~~~-------~~----~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (541)
                      .++...+..                 . ...+       +.    .+++.|..++.+. +..+|..+++++++++...+.
T Consensus       308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~  386 (591)
T 2vgl_B          308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ  386 (591)
T ss_dssp             HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence            887532111                 0 0000       11    2455666777777 889999999999999986543


Q ss_pred             HHHHH----Hhh---c-hh-------hHHHHHh------cCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCHHHHHH
Q 009184          362 QIQVI----MHV---H-AF-------SIIAVIE------ANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTHEQIKF  419 (541)
Q Consensus       362 ~~~~~----~~~---~-~~-------~~~~l~~------~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~  419 (541)
                      ....+    +..   . +.       ....++.      ..+++.|++.+.+ .+++++..++|+|+........     
T Consensus       387 ~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----  461 (591)
T 2vgl_B          387 SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----  461 (591)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----
T ss_pred             HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----
Confidence            32211    110   0 00       0011111      2356666666653 4567777777777777654321     


Q ss_pred             HHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHH-HHHh-cCCCHHHHHHH
Q 009184          420 LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKI-ESLQ-THDNAEIYEKS  497 (541)
Q Consensus       420 l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~L~-~~~~~~i~~~a  497 (541)
                        ...+++.+..-+...++.++..++.++.++....+..           .     ...+..+ .... .+.+++|+++|
T Consensus       462 --~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-----------~-----~~~i~~ll~~~~~d~~d~evrdRA  523 (591)
T 2vgl_B          462 --ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-----------T-----QELVQQVLSLATQDSDNPDLRDRG  523 (591)
T ss_dssp             --HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-----------T-----HHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             --HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-----------H-----HHHHHHHHHHhhhcCCChHHHHHH
Confidence              1244555555555566777777777777666432210           0     1223333 3333 46899999999


Q ss_pred             HHHHHHh
Q 009184          498 VKLLETY  504 (541)
Q Consensus       498 ~~il~~~  504 (541)
                      ...+.-+
T Consensus       524 ~~y~~ll  530 (591)
T 2vgl_B          524 YIYWRLL  530 (591)
T ss_dssp             HHHHTTT
T ss_pred             HHHHHHH
Confidence            9877544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.68  E-value=4.4e-15  Score=141.56  Aligned_cols=258  Identities=14%  Similarity=0.146  Sum_probs=200.7

Q ss_pred             HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 009184          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR  192 (541)
Q Consensus       113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  192 (541)
                      .+.+.++.|+..|.+++ +.++..|+++|+++..  +         +.++.|+.++.++++.++..|+++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            34667999999999887 9999999999999863  2         3578899999999999999999999998644332


Q ss_pred             hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  272 (541)
                      ...      .++.+...+..++++.++..++++|..+....+    ......++.|..++.++++.++..++++|+.+..
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111      233343333367889999999999999985432    1235678999999999999999999999998753


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (541)
Q Consensus       273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (541)
                                 .+.++.|+.++.++++.++..|+++|+.+....+         .+++.|..++.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2578999999999999999999999999853322         3567888999888 899999999999


Q ss_pred             HHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhh
Q 009184          353 SNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDL  432 (541)
Q Consensus       353 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~l  432 (541)
                      +++.  ++                    ..++.|+..+.++  +++..|+++|+.+..            ..+++.|..+
T Consensus       217 ~~~~--~~--------------------~~~~~L~~~l~d~--~vr~~a~~aL~~i~~------------~~~~~~L~~~  260 (280)
T 1oyz_A          217 SYRK--DK--------------------RVLSVLCDELKKN--TVYDDIIEAAGELGD------------KTLLPVLDTM  260 (280)
T ss_dssp             HHTT--CG--------------------GGHHHHHHHHTSS--SCCHHHHHHHHHHCC------------GGGHHHHHHH
T ss_pred             HHhC--CH--------------------hhHHHHHHHhcCc--cHHHHHHHHHHhcCc------------hhhhHHHHHH
Confidence            9985  22                    2566778888764  489999999999843            1467888888


Q ss_pred             cCC-CChHHHHHHHHHHH
Q 009184          433 LVC-PDPRIVTVCLEGLE  449 (541)
Q Consensus       433 L~~-~~~~~~~~~l~~L~  449 (541)
                      +.. ++++++..+++.|.
T Consensus       261 l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          261 LYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HTTSSCCHHHHHHHHHHT
T ss_pred             HhcCCCcHHHHHHHHHhh
Confidence            864 56777777777664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.64  E-value=9.4e-14  Score=147.05  Aligned_cols=324  Identities=16%  Similarity=0.120  Sum_probs=227.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      .....+++.+.+++...+.-+.-.+..++..  ++..-.    -+++.|.+-|++++ +.++..|+++|+++..  ++..
T Consensus        70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~----l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~--~~~~  140 (618)
T 1w63_A           70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHL----LMTNCIKNDLNHST-QFVQGLALCTLGCMGS--SEMC  140 (618)
T ss_dssp             GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHH----HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC--HHHH
T ss_pred             chHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHH----HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC--HHHH
Confidence            3678888999999999888888888887643  222111    14778888888888 9999999999999984  4433


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      .     .+++.+.+++.++++.+|..|+.++++++...|+..     .++++.+..++ .+.++.++..|+++|..++..
T Consensus       141 ~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          141 R-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLL-NEKNHGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             H-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTST-TCCCHHHHHHHHHHHHHHCCS
T ss_pred             H-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHh
Confidence            2     346888999999999999999999999987666422     24677777777 778899999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhcc---------------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC--
Q 009184          233 KPQPPFDQVSPALPALAHLIHS---------------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--  295 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~---------------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~--  295 (541)
                      .+.. ......++|.++.+|..               .++..+..++.+|+.++..++...     ..+++.|..++.  
T Consensus       210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~  283 (618)
T 1w63_A          210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNT  283 (618)
T ss_dssp             HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTS
T ss_pred             ChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhcc
Confidence            4321 22345677877777653               478888889999999987665432     244555555542  


Q ss_pred             ----CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhch
Q 009184          296 ----HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHA  371 (541)
Q Consensus       296 ----~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~  371 (541)
                          +.+..+...|++++..+... +..    . ..+++.|..++.+. ++.+|..|+.+|+.++...+..+.       
T Consensus       284 ~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~p~~~~-------  349 (618)
T 1w63_A          284 ETSKNVGNAILYETVLTIMDIKSE-SGL----R-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQTDHNAVQ-------  349 (618)
T ss_dssp             CCSSTHHHHHHHHHHHHHHHSCCC-HHH----H-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHHHHHHG-------
T ss_pred             ccccchHHHHHHHHHHHHHhcCCC-HHH----H-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhCHHHHH-------
Confidence                23457888999999887542 211    1 13567888888888 899999999999999875454333       


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHH
Q 009184          372 FSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI  451 (541)
Q Consensus       372 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l  451 (541)
                               ...+.++..+.+++..+|..|+.+|..++...+.+.        +++.|...+...+.+++..++.+|..+
T Consensus       350 ---------~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~~v~~I~~l  412 (618)
T 1w63_A          350 ---------RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKADCASGIFLA  412 (618)
T ss_dssp             ---------GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                     244566667777777777777777777766433211        234444445455555555555555555


Q ss_pred             HH
Q 009184          452 LK  453 (541)
Q Consensus       452 ~~  453 (541)
                      ..
T Consensus       413 a~  414 (618)
T 1w63_A          413 AE  414 (618)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.63  E-value=4.5e-14  Score=134.56  Aligned_cols=254  Identities=14%  Similarity=0.099  Sum_probs=198.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..++.+++.|.++++.++..|++.|.++..            .+.++.|+.++.+++ +.++..|+++|+.+..... ..
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-~~   88 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-CE   88 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-TH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-cc
Confidence            478999999999999999999999998741            235889999999888 9999999999999875322 11


Q ss_pred             HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          153 KVVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       153 ~~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      .     .+++.|. .++.++++.++..++++|+++....+...     ...++.++..+ .++++.++..++++|..+..
T Consensus        89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITA-FDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence            1     1234444 24677899999999999999974333221     22577888888 78899999999999998754


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                                ...+|.|..++.++++.++..++++|+.+....+         .+++.|..++.++++.++..|+++|+.
T Consensus       158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                      2478999999999999999999999999854332         356788899999999999999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE  391 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~  391 (541)
                      +.           +...++.|+.++.++ +  ++..|+++|+.+..  +                    .+++.|..++.
T Consensus       219 ~~-----------~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~--------------------~~~~~L~~~l~  262 (280)
T 1oyz_A          219 RK-----------DKRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K--------------------TLLPVLDTMLY  262 (280)
T ss_dssp             TT-----------CGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G--------------------GGHHHHHHHHT
T ss_pred             hC-----------CHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h--------------------hhhHHHHHHHh
Confidence            86           235678889999765 3  89999999998843  2                    25677888886


Q ss_pred             c-CchhHHHHHHHHHH
Q 009184          392 N-AEFDIKKEAAWAIS  406 (541)
Q Consensus       392 ~-~~~~v~~~a~~aL~  406 (541)
                      + .+.++...++.+|.
T Consensus       263 ~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          263 KFDDNEIITSAIDKLK  278 (280)
T ss_dssp             TSSCCHHHHHHHHHHT
T ss_pred             cCCCcHHHHHHHHHhh
Confidence            5 46788888877764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.60  E-value=9.7e-14  Score=153.72  Aligned_cols=355  Identities=14%  Similarity=0.185  Sum_probs=243.5

Q ss_pred             CHHHHHHhhcC-------CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184           74 NLPVMVAGVWS-------NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        74 ~l~~l~~~L~s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~  146 (541)
                      .+|.++..+..       +++..+..|..+|..+.........     ..+++.+.+.+++.+ +..+..|+++++.++.
T Consensus       325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence            45666666664       2357888888888887754211111     235677777888777 9999999999999998


Q ss_pred             CCh-hHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--HHHHHhcCChHHHHHhhcCCChhhHHHHHH
Q 009184          147 GTS-EHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--RDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (541)
Q Consensus       147 ~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~  223 (541)
                      +.. +.....+. .+++.|+..+.++++.+|..++|+++.++......  ....+ ...++.++..+ .+. +.++..++
T Consensus       399 ~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l-~~~-~~v~~~a~  474 (861)
T 2bpt_A          399 GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGL-QDH-PKVATNCS  474 (861)
T ss_dssp             SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHH-TSC-HHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHh-ccC-hHHHHHHH
Confidence            643 33333333 47889999999999999999999999998432110  00011 12467777777 443 88999999


Q ss_pred             HHHHhhhcCCC----CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-
Q 009184          224 WTLSNFCRGKP----QPPFDQVSPALPALAHLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-  296 (541)
Q Consensus       224 ~~L~~l~~~~~----~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-  296 (541)
                      |++.+++....    ..-......+++.|..++.+.+  +.++..++++++.++..........+. .+++.++..+.. 
T Consensus       475 ~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~  553 (861)
T 2bpt_A          475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQT  553 (861)
T ss_dssp             HHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHH
Confidence            99999987532    1112344677888888887544  789999999999988554433222222 355666655532 


Q ss_pred             --------------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCch-hHHHHHHHHHHHHhcCChH
Q 009184          297 --------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK-SIKKEACWTVSNITAGNRE  361 (541)
Q Consensus       297 --------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~~  361 (541)
                                    ....++..++.+|++++........... ..+++.++..+.+. +. .++..++++++.++.....
T Consensus       554 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~  631 (861)
T 2bpt_A          554 MSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGK  631 (861)
T ss_dssp             TTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGG
T ss_pred             HhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhh
Confidence                          1345778899999999876544322222 25778888888887 56 8999999999999874333


Q ss_pred             HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCC--hH
Q 009184          362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPD--PR  439 (541)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~--~~  439 (541)
                      ...           ..+. .++|.|+..+.+.+++++..++.++..++.........++  ..+++.+...+.+++  ++
T Consensus       632 ~~~-----------~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~  697 (861)
T 2bpt_A          632 GFE-----------KYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRE  697 (861)
T ss_dssp             GGH-----------HHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTT
T ss_pred             hHH-----------HHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHh
Confidence            232           2222 4889999999878889999999999988764332222222  346777778777654  78


Q ss_pred             HHHHHHHHHHHHHHhh
Q 009184          440 IVTVCLEGLENILKVG  455 (541)
Q Consensus       440 ~~~~~l~~L~~l~~~~  455 (541)
                      ++..++.++..+....
T Consensus       698 vr~~~~~~l~~l~~~~  713 (861)
T 2bpt_A          698 LKPAVLSVFGDIASNI  713 (861)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            9999999999998754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.60  E-value=1e-13  Score=153.46  Aligned_cols=357  Identities=15%  Similarity=0.169  Sum_probs=245.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCC----------------CCcHHHHHhcCCHHHHHHhhcCC------CcHH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIER----------------SPPIEEVIRSGVVPRFVEFLLRE------DYPQ  132 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~----------------~~~~~~~i~~g~i~~Lv~lL~~~------~~~~  132 (541)
                      ++.+...+.+.++.++..|+..+..++....                .......+ ..++|.++..+...      +++.
T Consensus       268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~  346 (861)
T 2bpt_A          268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWN  346 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCc
Confidence            4445556677889999999999988765310                00111111 45788888888752      2257


Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhc
Q 009184          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLN  211 (541)
Q Consensus       133 i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~  211 (541)
                      ++..|..+|..++....+.   ++ ..+++.+.+.+.+.+..+++.++++++.++.... ..-...+. .+++.++..+ 
T Consensus       347 ~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l-  420 (861)
T 2bpt_A          347 VSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLM-  420 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGG-
T ss_pred             HHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHc-
Confidence            8999999999988632211   11 1346777778888899999999999999996542 21112222 2577778877 


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh----HHHHHHHHhC
Q 009184          212 GQPKLSMLRNATWTLSNFCRGKPQ--PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN----DKIQAVIEAG  285 (541)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~----~~~~~~~~~g  285 (541)
                      .++++.++..++|++..++...+.  ........++|.++..+.++ +.++..++|++.+++....    ......+ ..
T Consensus       421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~  498 (861)
T 2bpt_A          421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-PA  498 (861)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-HH
Confidence            667899999999999999875321  12335678889999988765 8999999999998875311    1111112 25


Q ss_pred             cHHHHHHhhCCCC--hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC--------------CchhHHHHHH
Q 009184          286 VFPRLAEFLMHPS--PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN--------------YKKSIKKEAC  349 (541)
Q Consensus       286 ~l~~L~~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~--------------~~~~v~~~a~  349 (541)
                      +++.++..+.+.+  +.++..++.+++.++..........+. .+++.++..+...              ....++..++
T Consensus       499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  577 (861)
T 2bpt_A          499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNIL  577 (861)
T ss_dssp             HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHH
Confidence            6778888887543  789999999999998766544333332 3566666665421              1346788999


Q ss_pred             HHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCch-hHHHHHHHHHHHhccCCCHHHHHHHHHcCChHH
Q 009184          350 WTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEF-DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKP  428 (541)
Q Consensus       350 ~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~  428 (541)
                      .+|++++......+.           .... .+++.++..+...+. .++..+++++..++.........++-  .+++.
T Consensus       578 ~~l~~l~~~~~~~~~-----------~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~  643 (861)
T 2bpt_A          578 TVLAAVIRKSPSSVE-----------PVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPY  643 (861)
T ss_dssp             HHHHHHHHHCGGGTG-----------GGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHH
T ss_pred             HHHHHHHHHhhhhhH-----------HHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHH
Confidence            999999874443332           2222 577888888888766 89999999999987543323333332  37788


Q ss_pred             HhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184          429 LCDLLVCPDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       429 L~~lL~~~~~~~~~~~l~~L~~l~~~~  455 (541)
                      |...++.++++++..++.++..+....
T Consensus       644 l~~~l~~~~~~vr~~a~~~l~~l~~~~  670 (861)
T 2bpt_A          644 LLKALNQVDSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             HHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHh
Confidence            888888888889999999999888754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.58  E-value=2e-13  Score=151.55  Aligned_cols=359  Identities=17%  Similarity=0.189  Sum_probs=245.9

Q ss_pred             CHHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChh
Q 009184           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        74 ~l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      .++.++..+.++  ++..+..++.++..++..- .+..-.-.-..+++.+.+.+.+++ ++.++..|+.++..++.....
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc-CHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            567888888888  8999999999999988642 111100011346777888888762 389999999999998863222


Q ss_pred             HHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184          151 HTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       151 ~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  229 (541)
                      ... ......+++.+...+.+++.+++..++.+|..++...+..-...+...+++.++..+ .+.++.++..+++++..+
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l  286 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHH
Confidence            211 011112567778888888999999999999999865543222223334677777766 677889999999999888


Q ss_pred             hcCC----------------C---CCChh--hhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCChHHHHHH
Q 009184          230 CRGK----------------P---QPPFD--QVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAV  281 (541)
Q Consensus       230 ~~~~----------------~---~~~~~--~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~  281 (541)
                      +...                +   .....  ....++|.++..+..       ++..++..+..++..++....+.   +
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~  363 (876)
T 1qgr_A          287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---I  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---G
T ss_pred             HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---h
Confidence            7541                1   11111  235667777777752       34568888999998887543221   1


Q ss_pred             HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184          282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (541)
Q Consensus       282 ~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (541)
                      +. .+++.+...+.++++.++..|+.+++.++.+.. ......+ .++++.++..+.++ ++.+|..|+|++++++...+
T Consensus       364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~  440 (876)
T 1qgr_A          364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred             HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCc
Confidence            22 466777788888999999999999999998765 3333333 45889999999888 89999999999999997433


Q ss_pred             HHH--HHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC--------------HHHHHHHHHcC
Q 009184          361 EQI--QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT--------------HEQIKFLVIQG  424 (541)
Q Consensus       361 ~~~--~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~--------------~~~~~~l~~~~  424 (541)
                      ...  .           .. -..+++.|+..+.+. +.++..++++|.+++....              .....++  ..
T Consensus       441 ~~~~~~-----------~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~  505 (876)
T 1qgr_A          441 EAAIND-----------VY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--EL  505 (876)
T ss_dssp             GGTSST-----------TT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HH
T ss_pred             hhcccH-----------HH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HH
Confidence            211  1           11 125778888888764 8999999999999975310              0001111  23


Q ss_pred             ChHHHhhhcCCC---ChHHHHHHHHHHHHHHHhh
Q 009184          425 CIKPLCDLLVCP---DPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       425 ~i~~L~~lL~~~---~~~~~~~~l~~L~~l~~~~  455 (541)
                      +++.|..++...   +..++..+++++..+....
T Consensus       506 il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~  539 (876)
T 1qgr_A          506 IVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS  539 (876)
T ss_dssp             HHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence            567777777654   3567778889998888754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.57  E-value=6.8e-13  Score=147.21  Aligned_cols=275  Identities=20%  Similarity=0.212  Sum_probs=193.7

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCcH-HHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPI-EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        75 l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      ++.+...+.++  ++.++..|+.++..++..- .+.. .......+++.+.+.+.+++ ++++..++.+|..++...+..
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            34455666665  5889999999999887532 1111 01111236777888887776 899999999999999865554


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---------------------hhHHHHHhcCChHHHHHhh
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP---------------------RCRDLVLSQGGLVPLLAQL  210 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~---------------------~~r~~i~~~g~i~~Ll~~l  210 (541)
                      ....+...+++.++..+.+.++.++..++.++.+++....                     ....... ...++.++..+
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l  330 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTL  330 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHh
Confidence            4444444678888888888899999999999998874311                     0000011 22456677776


Q ss_pred             cC------CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh-HHHHHHHH
Q 009184          211 NG------QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE  283 (541)
Q Consensus       211 ~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-~~~~~~~~  283 (541)
                      ..      +.+..++..+..++..++...+   ......+++.+...+.+.++.++..++++++.++.... +...... 
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-  406 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-  406 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence            42      2345788889999988887543   13356678888888888899999999999999997654 3333333 


Q ss_pred             hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH-HHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC
Q 009184          284 AGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT-QCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG  358 (541)
Q Consensus       284 ~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  358 (541)
                      ..+++.++..+.++++.++..|++++++++....... ..-.-..+++.|+..+.+  ++.++..++|+|++++..
T Consensus       407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Confidence            3588999999999999999999999999997643311 000113567788888866  478999999999999863

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.56  E-value=4.1e-14  Score=144.97  Aligned_cols=357  Identities=15%  Similarity=0.112  Sum_probs=243.3

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCc-----------HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHH
Q 009184           75 LPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPP-----------IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWAL  141 (541)
Q Consensus        75 l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~-----------~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L  141 (541)
                      +..++..+.++  ++.+|..|+..|++++... ...           +..-....+-..|++.|.+++ +.+ ..++.++
T Consensus        37 ~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i  113 (462)
T 1ibr_B           37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHhcccc-chHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence            44556666553  6889999999999998542 100           001112234556778888877 778 8899999


Q ss_pred             HHHhcCC-hhHHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCC-hh
Q 009184          142 TNIASGT-SEHTKVVIDHGAVPIFVKLLYSP--SDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQP-KL  216 (541)
Q Consensus       142 ~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~-~~  216 (541)
                      +.|+... +..    .-.++++.|+..+.++  ++.+++.++.+|+.++.+. +..-.... ..+++.++..+.... +.
T Consensus       114 ~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~  188 (462)
T 1ibr_B          114 AGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN  188 (462)
T ss_dssp             HHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence            9998732 210    0146789999999887  8999999999999998543 22111111 125677777784432 78


Q ss_pred             hHHHHHHHHHHhhhcCCC-C-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh
Q 009184          217 SMLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL  294 (541)
Q Consensus       217 ~~~~~a~~~L~~l~~~~~-~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL  294 (541)
                      .++..+++++.++..... . ........+++.+...+.+.+++++..+++++..++..........+..++++.++..+
T Consensus       189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (462)
T 1ibr_B          189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (462)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764321 0 01111122467777777788999999999999998865443222122226677777788


Q ss_pred             CCCChhhHHHHHHHHhHhhcCCch---------------------hHHHHHhcCchHHHHHhhcCC------CchhHHHH
Q 009184          295 MHPSPSVLIPALRTVGNIVTGDDM---------------------QTQCVIEYQALPCLLNLLSGN------YKKSIKKE  347 (541)
Q Consensus       295 ~~~~~~v~~~al~~L~nl~~~~~~---------------------~~~~~~~~~~l~~L~~lL~~~------~~~~v~~~  347 (541)
                      .+.++.++..|+..++.++.....                     ..... -..+++.++..+...      .+..+|..
T Consensus       269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r~~  347 (462)
T 1ibr_B          269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKA  347 (462)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH-hhhccHHHHHHHHhcccccccccchHHHH
Confidence            888899999999999988754210                     01001 134567777777532      14578999


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChH
Q 009184          348 ACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK  427 (541)
Q Consensus       348 a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~  427 (541)
                      |+.+|..++....+.+              + ..+++.+...+.+.++.+|..|+.+++.++.+..++...... ..+++
T Consensus       348 a~~~L~~l~~~~~~~~--------------~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~  411 (462)
T 1ibr_B          348 AGVCLMLLATCCEDDI--------------V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMP  411 (462)
T ss_dssp             HHHHHHHHHHHTTTTH--------------H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHH
T ss_pred             HHHHHHHHHHhccHHH--------------H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHH
Confidence            9999999987433221              1 146778888888899999999999999999865422111111 45788


Q ss_pred             HHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184          428 PLCDLLVCPDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       428 ~L~~lL~~~~~~~~~~~l~~L~~l~~~~~  456 (541)
                      .++.++.++++.++..++++|.++.....
T Consensus       412 ~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          412 TLIELMKDPSVVVRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999987653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.54  E-value=5.2e-13  Score=136.67  Aligned_cols=401  Identities=11%  Similarity=0.057  Sum_probs=267.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHH
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      +..++..+.++|...+..|-..|..+....         ..+++..|+.++.+++ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            557777888999999999999998864310         1345677888887652 489999999999998754311110


Q ss_pred             H-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCC--hhhHHH
Q 009184          154 V-----V------IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP--KLSMLR  220 (541)
Q Consensus       154 ~-----i------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~--~~~~~~  220 (541)
                      .     .      ....+-..|+..+.++++.+ ..++.+++.++...... .  .-.+.++.++..+ .+.  ++.++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANV-TNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence            0     0      00122355777788877778 88999999997432110 0  0123677788888 444  788999


Q ss_pred             HHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHHhhCC
Q 009184          221 NATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAEFLMH  296 (541)
Q Consensus       221 ~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~lL~~  296 (541)
                      .++.+|..++... +.........+++.+..++.++  +..++..++++++.+...-..... .....-+++.+...+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999999753 2222334466888889999877  789999999999987643322111 01111246666777788


Q ss_pred             CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh--------
Q 009184          297 PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH--------  368 (541)
Q Consensus       297 ~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--------  368 (541)
                      +++.++..++.+++.++...+......+..++++.++..+.+. ++.++..|++.++.++........ ...        
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~  306 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAI-EASEAAEQGRP  306 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHH-HHCCTTCSSSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHH-hcccccccCCC
Confidence            8999999999999999876554322222226788888888887 899999999999999763211000 000        


Q ss_pred             --hchhhHHHHHhcCcHHHHHHHhhc-------CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChH
Q 009184          369 --VHAFSIIAVIEANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPR  439 (541)
Q Consensus       369 --~~~~~~~~l~~~~~l~~L~~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~  439 (541)
                        .....++.-.-..++|.++..+..       +++.+|..|+.+|..++........     ..+++.+...+.++++.
T Consensus       307 ~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHH
T ss_pred             ccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChH
Confidence              000001010113467777777753       2467899999999998764321111     24567788888899999


Q ss_pred             HHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184          440 IVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       440 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~  507 (541)
                      ++..++.+|..+.......         .+...+  ...+..|..+..++++.|+..|.+.+.++...
T Consensus       382 ~r~aal~~l~~l~~~~~~~---------~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          382 YRDAAVMAFGCILEGPEPS---------QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HHHHHHHHHHHTSSSSCTT---------TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcHH---------HHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999988632110         011111  34567788888889999999999999988653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.54  E-value=2.3e-13  Score=144.01  Aligned_cols=287  Identities=16%  Similarity=0.134  Sum_probs=198.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .+..+.+.|.++++.++..|++++.++..    +   .+. ..+++.+..+|.+++ +.++..|+.++.++...+++...
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~----~---~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS----S---EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCC----H---HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCC----H---HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH
Confidence            45667777778888888888888887742    1   122 346888999999988 99999999999999987776432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC--------------CChhhHH
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG--------------QPKLSML  219 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~--------------~~~~~~~  219 (541)
                           ++++.+..++.+.++.++..|+++|+.++..++.....+.  ..++.++..|.+              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 5788888999999999999999999999977664322222  367777776632              2467777


Q ss_pred             HHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009184          220 RNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (541)
Q Consensus       220 ~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~------~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l  293 (541)
                      ..++.+|..++...+    ......++.|..++.      +.+..+...+++++..+... +.    +.. .+++.|..+
T Consensus       252 ~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~~  321 (618)
T 1w63_A          252 VRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGRF  321 (618)
T ss_dssp             HHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHHH
Confidence            788888888886542    122334445555443      22456788888888876542 21    111 356677777


Q ss_pred             hCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhh
Q 009184          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS  373 (541)
Q Consensus       294 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~  373 (541)
                      +.++++.++..|+.+|+.++...+...     ....+.++.++.++ +..+|..|+.+|..++....  +.         
T Consensus       322 L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~---------  384 (618)
T 1w63_A          322 LLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IR---------  384 (618)
T ss_dssp             HTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--TH---------
T ss_pred             HhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HH---------
Confidence            888888888888888888887554322     13456677777777 78888888888888876321  22         


Q ss_pred             HHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          374 IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       374 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                        .     +++.|...+.+.+.+++..++.+|+.++.
T Consensus       385 --~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          385 --G-----MMKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             --H-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             --H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence              1     33556666666666777777777766664

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.50  E-value=4e-12  Score=146.01  Aligned_cols=404  Identities=13%  Similarity=0.128  Sum_probs=266.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .++.+++.+.+.|+..+..|+..|.+.+... ....+.-....+++.|++.|.+++ +.+|..|+.+|+.++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~-~~~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKD-SIKLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS-CCSCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccc-ccCCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            4788999999999999999999999877542 111111112346888999998777 999999999999999755441  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh------HHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC------RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~------r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~  227 (541)
                      .+  ..+++.|+..+.++++.+|..++.+|+.++......      ..... ...++.|+..+..+.+..++..++.++.
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            11  135688888888888899999999999998433221      11112 2367888888843578899999999999


Q ss_pred             hhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHH
Q 009184          228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP-SPSVLIPAL  306 (541)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~v~~~al  306 (541)
                      .++...+..-......+++.+...+.++++.++..++.+++.++......   +. ..+++.++..|... ++.++..++
T Consensus       160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~  235 (1230)
T 1u6g_C          160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI  235 (1230)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence            99965422222245778888999999889999999999999998665432   11 25677788777543 346788889


Q ss_pred             HHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL  386 (541)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L  386 (541)
                      .+++.++...+...... -..+++.++..+.+. ++.+|..++++++.++....+.+.           ..+ ..+++.+
T Consensus       236 ~~l~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~-----------~~l-~~li~~l  301 (1230)
T 1u6g_C          236 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVY-----------PHV-STIINIC  301 (1230)
T ss_dssp             HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCH-----------HHH-HHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHH-----------HhH-HHHHHHH
Confidence            99998886544322111 246889999999887 899999999999999874333222           111 0122333


Q ss_pred             HHHhh-------------------------------------cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 009184          387 VALLE-------------------------------------NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL  429 (541)
Q Consensus       387 ~~~l~-------------------------------------~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  429 (541)
                      +..+.                                     +..+++|..|+.++..++.........+  -..+++.+
T Consensus       302 l~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l  379 (1230)
T 1u6g_C          302 LKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPAL  379 (1230)
T ss_dssp             TTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHH
T ss_pred             HHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHH
Confidence            22221                                     1135689999999999886432111222  24577888


Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHHhhHhhhh-cCC-------CCc-chhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHH
Q 009184          430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKN-LGN-------TDV-NVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKL  500 (541)
Q Consensus       430 ~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~-~~~-------~~~-~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~i  500 (541)
                      ...+.+.++.++..++.++..++........ ..+       .+. ..+...+  ...+..+.....++++.++..+...
T Consensus       380 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~  457 (1230)
T 1u6g_C          380 ISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNM  457 (1230)
T ss_dssp             HSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHH
Confidence            8888888899999999999888764211000 000       000 0001111  1234445555667788877777766


Q ss_pred             HHHhCC
Q 009184          501 LETYWL  506 (541)
Q Consensus       501 l~~~~~  506 (541)
                      +..+..
T Consensus       458 L~~l~~  463 (1230)
T 1u6g_C          458 LTELVN  463 (1230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.42  E-value=8.8e-12  Score=113.15  Aligned_cols=187  Identities=21%  Similarity=0.180  Sum_probs=157.6

Q ss_pred             cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (541)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (541)
                      .+.++.|+.+|.+++ +.++..|+++|+.+..           .++++.|+.++.++++.++..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            457999999999887 9999999999998764           2568999999999999999999999999852      


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                           .+.++.|+..| .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 23578888888 78889999999999998853          3578999999999999999999999999853  


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                               ...++.|..++.++++.++..|+.+|+.+..           ...++.|..++.++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     2467889999999999999999999999853           23567788888888 89999999999999


Q ss_pred             HhcC
Q 009184          355 ITAG  358 (541)
Q Consensus       355 l~~~  358 (541)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            9764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.41  E-value=1.6e-10  Score=121.98  Aligned_cols=328  Identities=13%  Similarity=0.102  Sum_probs=228.0

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      .....+++.+.+++...+..+.-.+..++..  ++  +.++-  +++.+.+=|++++ +.++..|+.+|+++..  ++..
T Consensus        74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~--~~--e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNS--NS--ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC--CH--HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHccC--Cc--HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence            4788999999999999999888888887643  22  21111  3667777788888 9999999999999965  5544


Q ss_pred             HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          153 KVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      ..     +++.+.+++  .+.++.+|..|+.++.++....|+   .+...+.++.+..+| .+.++.++.+++.++..++
T Consensus       145 ~~-----l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          145 EA-----FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA  215 (621)
T ss_dssp             HH-----HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence            43     468889999  889999999999999999875553   222246888899988 7889999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHH----HhhccC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHH
Q 009184          231 RGKPQPPFDQVSPALPALA----HLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAE  292 (541)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~----~lL~~~-------------d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~  292 (541)
                      ...+.    .....+|.++    .++...             ++-.+...+..+..++... ++....+.+  ++..++.
T Consensus       216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~  289 (621)
T 2vgl_A          216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN  289 (621)
T ss_dssp             HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred             HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence            86532    2234445444    443221             5778888888888887543 333332322  4444443


Q ss_pred             hhC---------CCCh--hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChH
Q 009184          293 FLM---------HPSP--SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE  361 (541)
Q Consensus       293 lL~---------~~~~--~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  361 (541)
                      .+.         +.+.  .+...|++++..+.. .+...     ..++..|..+|.++ ++.+|..|+.+|..++...+.
T Consensus       290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~-----~~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~  362 (621)
T 2vgl_A          290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLL-----VRACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS  362 (621)
T ss_dssp             HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHH-----HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT
T ss_pred             hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHH-----HHHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc
Confidence            321         1122  778888888888753 22222     13566788888877 899999999999999875432


Q ss_pred             HHHHHHhhchhhHHHHHhcCcHHHHHHHhh-cCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHH
Q 009184          362 QIQVIMHVHAFSIIAVIEANIIGPLVALLE-NAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRI  440 (541)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~  440 (541)
                       ..           . +. ...+.++..+. ++|..++..++..|..++..   .....     ++..|...+...|.++
T Consensus       363 -~~-----------~-~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~  420 (621)
T 2vgl_A          363 -HE-----------A-VK-THIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSI  420 (621)
T ss_dssp             -HH-----------H-HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHH
T ss_pred             -HH-----------H-HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHH
Confidence             11           1 11 45677788888 88899999999999999752   33333     3455666666667776


Q ss_pred             HHHHHHHHHHHHH
Q 009184          441 VTVCLEGLENILK  453 (541)
Q Consensus       441 ~~~~l~~L~~l~~  453 (541)
                      +..++..+..+..
T Consensus       421 ~~~~v~~I~~la~  433 (621)
T 2vgl_A          421 REEIVLKVAILAE  433 (621)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.40  E-value=1e-11  Score=111.84  Aligned_cols=184  Identities=22%  Similarity=0.190  Sum_probs=157.2

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      +..+.++++|.+++ +.++..|+++|+.+..           .+.++.|+.+|.++++.++..++++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            45889999999998 9999999999998764           2468999999999999999999999998842       


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  275 (541)
                          ...++.|+..| .++++.++..++++|..+..          ...++.|..++.++++.++..++++|+.+..   
T Consensus        75 ----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           75 ----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                13578888888 77899999999999998753          3578899999999999999999999998853   


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (541)
Q Consensus       276 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (541)
                              .+.++.|..++.++++.++..|+.+|+.+..           ...++.|..++.++ ++.+|..|.++|.++
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLETH  196 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence                    2577889999999999999999999999842           23567788888888 899999999999987


Q ss_pred             h
Q 009184          356 T  356 (541)
Q Consensus       356 ~  356 (541)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.40  E-value=1.6e-11  Score=141.00  Aligned_cols=397  Identities=12%  Similarity=0.128  Sum_probs=256.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc----HHHHHhcCCHHHHHHhhcC-CCcHHHHHHHHHHHHHHhcCC
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIRSGVVPRFVEFLLR-EDYPQLQFEAAWALTNIASGT  148 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~i~~g~i~~Lv~lL~~-~~~~~i~~~a~~~L~~l~~~~  148 (541)
                      .++.++..+.++++.+|..|+.++..++..-....    ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            46677778888888889999999998876532220    1111224579999999984 55 899999999999998522


Q ss_pred             hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184          149 SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (541)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~  228 (541)
                      +....... ..+++.|+..+.++++.+|..|+.+|+.++...+.   ..+ ...++.++..+....+..++..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            11100000 23567788888888999999999999999965442   122 23577788777544445677788888888


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC------------
Q 009184          229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH------------  296 (541)
Q Consensus       229 l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~------------  296 (541)
                      ++...+..-......++|.+...+..++++++..+++++..++........... ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            887643322234578999999999988899999999999888754332211111 1344444444421            


Q ss_pred             -------------------------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184          297 -------------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (541)
Q Consensus       297 -------------------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (541)
                                               ..+.++..|+.+++.++...+.....++ ..+++.++..+.+. ++.+|..++.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1256788999999999875443333333 46778888888777 88999999999


Q ss_pred             HHHHhcC--C-----------------hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184          352 VSNITAG--N-----------------REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  412 (541)
Q Consensus       352 L~nl~~~--~-----------------~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  412 (541)
                      +..++..  .                 .....           .++ ..+++.+...+.+.++.+|..++.++..++...
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~  465 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ-----------SQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVL  465 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHH-----------HHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHH-----------HHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence            8888751  1                 11111           222 246777777788889999999999999887643


Q ss_pred             CHHHHHHHHHcCChHHHhhhcCCCCh--HHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCC
Q 009184          413 THEQIKFLVIQGCIKPLCDLLVCPDP--RIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDN  490 (541)
Q Consensus       413 ~~~~~~~l~~~~~i~~L~~lL~~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~  490 (541)
                      ......+  -..+++.+...|..+.+  .++..++..+..++.....         ..+...+.  ..+..|.....+.+
T Consensus       466 ~~~l~~~--l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~---------~~~~~~l~--~llp~L~~~l~d~~  532 (1230)
T 1u6g_C          466 PGALTQH--IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP---------QVFHPHVQ--ALVPPVVACVGDPF  532 (1230)
T ss_dssp             TTTTGGG--HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG---------GGGHHHHT--TTHHHHHHHHTCSS
T ss_pred             hhhhHHH--HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCH---------HHHHhHHH--HHHHHHHHHHcccc
Confidence            2111011  12357788888887654  7888888888877753211         11122221  23455555555566


Q ss_pred             HHHHHHHHHHHHHh
Q 009184          491 AEIYEKSVKLLETY  504 (541)
Q Consensus       491 ~~i~~~a~~il~~~  504 (541)
                      ..+...|...+..+
T Consensus       533 ~~v~~~al~~l~~l  546 (1230)
T 1u6g_C          533 YKITSEALLVTQQL  546 (1230)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            66665555544433

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.40  E-value=5.3e-11  Score=107.05  Aligned_cols=184  Identities=22%  Similarity=0.224  Sum_probs=156.2

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCCh
Q 009184          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF  238 (541)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~  238 (541)
                      +..+.++++|.++++.++..|+++|+.+..           .+.++.|+..+ .++++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            456889999999999999999999998752           23678899999 78899999999999998743       


Q ss_pred             hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch
Q 009184          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (541)
Q Consensus       239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  318 (541)
                         ...++.|..++.++++.++..++++|+.+..           ...++.|+.++.++++.++..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               3578999999999999999999999998753           2467889999999999999999999999853    


Q ss_pred             hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHH
Q 009184          319 QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK  398 (541)
Q Consensus       319 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~  398 (541)
                             ...++.|..++.+. ++.+|..|+++|+.+.  .+.                    .++.|..++.++++.++
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~--------------------~~~~L~~~l~d~~~~vr  186 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER--------------------VRAAMEKLAETGTGFAR  186 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH--------------------HHHHHHHHHHHCCHHHH
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh--------------------HHHHHHHHHhCCCHHHH
Confidence                   35678899999988 9999999999999993  232                    35677888888999999


Q ss_pred             HHHHHHHHHhc
Q 009184          399 KEAAWAISNAT  409 (541)
Q Consensus       399 ~~a~~aL~nl~  409 (541)
                      ..|..+|.++-
T Consensus       187 ~~A~~aL~~l~  197 (201)
T 3ltj_A          187 KVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.39  E-value=1.8e-11  Score=111.04  Aligned_cols=188  Identities=20%  Similarity=0.181  Sum_probs=157.1

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.++.+++.|.++++.++..|+..|..+..            .+.++.|+++|.+++ +.++..|+++|+.+..      
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            478999999999999999999999988642            246899999999887 9999999999999864      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                           .+.++.|+.+|.++++.++..++++|+.+..           .+.++.|+..+ .++++.++..++++|..+.. 
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence                 2468999999999999999999999999852           23578888888 88899999999999999843 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                               ...++.|..++.++++.++..++++|..+..           ...++.|..++.++++.++..|..+|+++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     3578999999999999999999999999853           24567788888889999999999999998


Q ss_pred             hcCCc
Q 009184          313 VTGDD  317 (541)
Q Consensus       313 ~~~~~  317 (541)
                      .....
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            87554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.29  E-value=1.2e-10  Score=122.85  Aligned_cols=366  Identities=12%  Similarity=0.112  Sum_probs=237.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhh--cCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFL--LREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL--~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      .+..+.+.+.++++.++-.|++++.++..    +.   +. ..+++.+.++|  .+.+ +.++..|+.++..+...+++.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e---~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS----RE---MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HH---HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HH---HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence            45666677888889888889999888742    11   22 23678888888  7777 999999999999999866654


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHH----hhcC--CC----------h
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLA----QLNG--QP----------K  215 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~----~l~~--~~----------~  215 (541)
                      ..   ..+.++.+..+|.++++.++..|+.++..++...+..   .  ...++.++.    ++..  .+          +
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence            32   2478999999999999999999999999998766531   1  112333333    3311  11          4


Q ss_pred             hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCChHHHHHHHHh
Q 009184          216 LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA  284 (541)
Q Consensus       216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL---------~~~d--~~v~~~a~~~L~~l~~~~~~~~~~~~~~  284 (541)
                      +-.+..++..+..++.............+++.++..+         ++.+  ..|...++.++..+.. .++...     
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----
Confidence            5677777777777764321111111223334333322         1223  3788899999988863 222222     


Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhc-CCCchhHHHHHHHHHHHHhcCChHHH
Q 009184          285 GVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS-GNYKKSIKKEACWTVSNITAGNREQI  363 (541)
Q Consensus       285 g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (541)
                      .++..|..+|.++++.++..++.+|..++...+.. ..+  ......++..|. ++ +..+|..++.+|..++.  +..+
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~~--~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-EAV--KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HHH--HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-HHH--HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence            35677888998899999999999999999765421 122  346777888888 77 89999999999999974  4455


Q ss_pred             HHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHH
Q 009184          364 QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTV  443 (541)
Q Consensus       364 ~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~  443 (541)
                      .                .++..|...+...+.+++..++.+++.++..-.+..      .-+++.|++++......+...
T Consensus       403 ~----------------~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~e  460 (621)
T 2vgl_A          403 Q----------------QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEE  460 (621)
T ss_dssp             H----------------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSH
T ss_pred             H----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHH
Confidence            5                356678888888899999999999998874211000      123556666665544334444


Q ss_pred             HHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Q 009184          444 CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLETYW  505 (541)
Q Consensus       444 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~-~~~~i~~~a~~il~~~~  505 (541)
                      +...+..++...+..+.        +.       ....++.+... ....+...+.|++.+|-
T Consensus       461 v~~~l~~ii~~~~~~~~--------~~-------~~~l~~~l~~~~~~~~li~~~~wilGEy~  508 (621)
T 2vgl_A          461 VWYRVIQIVINRDDVQG--------YA-------AKTVFEALQAPACHENLVKVGGYILGEFG  508 (621)
T ss_dssp             HHHHHHHHHGGGCSCHH--------HH-------HHHHHHHHTSSSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCChhHHH--------HH-------HHHHHHHHcCccchHHHHHHHHHHhcchH
Confidence            44555555543322111        11       01112233322 23456677788888884

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.15  E-value=6.2e-09  Score=86.90  Aligned_cols=216  Identities=14%  Similarity=0.163  Sum_probs=178.4

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC
Q 009184          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (541)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  237 (541)
                      ..++..++.+|.++-..++.+|+..+.+++..-++..+.     .+..|+.++.++....+......++..++.-.|   
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---  102 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---  102 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence            356788999999988999999999999999888875444     356788888788888888888999999987654   


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  317 (541)
                       ..+.+.+|.+..-..-.|++++.....+|..++..++....     +++.-+..++.+++..-+..|+..++.+.....
T Consensus       103 -e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~  176 (253)
T 2db0_A          103 -ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSF  176 (253)
T ss_dssp             -HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred             -HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence             56688899998888889999999999999999988776544     567788999999998888899999998877665


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI  397 (541)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  397 (541)
                      .+.     ...+|.|..+|.+. +.-||..|.-+|.+++..++....                 ++..-+.-+.+.+..+
T Consensus       177 ~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRk-----------------ii~~kl~e~~D~S~lv  233 (253)
T 2db0_A          177 KYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRK-----------------VVIKRLEELNDTSSLV  233 (253)
T ss_dssp             HHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHH-----------------HHHHHHHHCCCSCHHH
T ss_pred             ccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHH-----------------HHHHHHHHhcCcHHHH
Confidence            444     46789999999999 999999999999999998888554                 3344556677778888


Q ss_pred             HHHHHHHHHHhcc
Q 009184          398 KKEAAWAISNATS  410 (541)
Q Consensus       398 ~~~a~~aL~nl~~  410 (541)
                      +..+-.+|+.++.
T Consensus       234 ~~~V~egL~rl~l  246 (253)
T 2db0_A          234 NKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.11  E-value=2.6e-09  Score=114.11  Aligned_cols=217  Identities=16%  Similarity=0.121  Sum_probs=156.2

Q ss_pred             hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-Ch
Q 009184          114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGD-SP  191 (541)
Q Consensus       114 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~-~~  191 (541)
                      +..++| +++.|++++ +..|..|+++|++|+. +++.+..+...|++..+ ..+|.+++.++++.|+++|.||+.+ .+
T Consensus        33 ~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           33 EDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            344555 557789988 9999999999999997 68888888888888765 4578889999999999999999954 56


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (541)
Q Consensus       192 ~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  271 (541)
                      ...+.+...|++++|+.++.+         ....+..+......... .....+           .++...++++|.+|+
T Consensus       110 d~~~~l~~~~il~~L~~~l~~---------~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~l~lL~~L~  168 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAKA---------VLETLTTSEPPFSKLLK-AQQRLV-----------WDITGSLLVLIGLLA  168 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHH---------HHHHHHCBTTBGGGSCH-HHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHHHh---------hHHHHhhhccccccccH-HHHHHH-----------HHHHHHHHHHHHHHH
Confidence            788888999999999998831         11222222111100000 001111           123455667777788


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCC---CChhhHHHHHHHHhHhhcCCchhHHHHHhcCch---HHHHHhhcCCCchhHH
Q 009184          272 DGTNDKIQAVIEAGVFPRLAEFLMH---PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIK  345 (541)
Q Consensus       272 ~~~~~~~~~~~~~g~l~~L~~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~  345 (541)
                      ..+++....+...+.++.|+.+|.+   ....++..|+.+|..++..++...+.+.+.+..   ..+..+..+.  ...+
T Consensus       169 e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~--~~~~  246 (684)
T 4gmo_A          169 LARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT--DPRA  246 (684)
T ss_dssp             HHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS--CTTH
T ss_pred             hCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC--cHHH
Confidence            7777777778888999999998843   245799999999999999999888888776643   3344433443  3457


Q ss_pred             HHHHHHHHHHh
Q 009184          346 KEACWTVSNIT  356 (541)
Q Consensus       346 ~~a~~~L~nl~  356 (541)
                      ..++++|.|+.
T Consensus       247 ~la~giL~Ni~  257 (684)
T 4gmo_A          247 VMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhHh
Confidence            78999999985

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.05  E-value=1.6e-08  Score=107.98  Aligned_cols=273  Identities=14%  Similarity=0.138  Sum_probs=191.9

Q ss_pred             CHHHHHHhhc---CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-------cHHHHHHHHHHHHH
Q 009184           74 NLPVMVAGVW---SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-------YPQLQFEAAWALTN  143 (541)
Q Consensus        74 ~l~~l~~~L~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-------~~~i~~~a~~~L~~  143 (541)
                      ++..+-+.|.   ++++.++.-|+..|.-+-.+..    ..     ++..|...|.+++       .+.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4566666776   6678888888888887765431    11     3666777776543       36788899999999


Q ss_pred             HhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHH
Q 009184          144 IASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNAT  223 (541)
Q Consensus       144 l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~  223 (541)
                      +..|+...       .+++.|..++..++..+++.|+.+||.+......       ..++..|+..+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHHHHHHHH
Confidence            87765321       2356778888777777888999999987533321       113456666654566788999999


Q ss_pred             HHHHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHh--ccCChHHHHHHHHhCcHHHHHHhh-CCCCh
Q 009184          224 WTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYL--SDGTNDKIQAVIEAGVFPRLAEFL-MHPSP  299 (541)
Q Consensus       224 ~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l--~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~  299 (541)
                      .+|..+..+.        ...++.++..|. +.++-++..++.+++--  ..++...         ++.|+..+ .+.+.
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            9999887664        344566666665 46788888887777543  3344332         34344443 56677


Q ss_pred             hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHh
Q 009184          300 SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIE  379 (541)
Q Consensus       300 ~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~  379 (541)
                      .++..|+.+||.+..+.++         .++.++.+|.+..++.+|..|+++|+.++.+++.. .               
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-~---------------  647 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-S---------------  647 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-H---------------
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-H---------------
Confidence            8999999999999887753         24455555544449999999999999999876642 1               


Q ss_pred             cCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC
Q 009184          380 ANIIGPLVALLENAEFDIKKEAAWAISNATSGGT  413 (541)
Q Consensus       380 ~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~  413 (541)
                        ++..|..++.+.+..|+..|+.+|+.+..+.+
T Consensus       648 --aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          648 --AIDVLDPLTKDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             --HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             --HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence              45567777888899999999999999987644

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.98  E-value=4.3e-08  Score=94.32  Aligned_cols=277  Identities=13%  Similarity=0.071  Sum_probs=163.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      ..+.+++.+.++|...+.-+.-.+..+... .++.+      =++..|.+=+++++ +-++-.|+++|++|..  ++...
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence            467778899999999999888888777644 22322      14778888889988 9999999999999987  33333


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                      .     +.+.+.+.+.+.++.++..|+.+...+....|+.    . .+++..+-.++ .+.++.++.+|+.++..++..+
T Consensus       139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d  207 (355)
T 3tjz_B          139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND  207 (355)
T ss_dssp             H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred             H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence            3     3577888999999999999999999999888763    2 25788888888 7788999999999999998753


Q ss_pred             CCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184          234 PQPPFDQVSPALPALAHLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (541)
Q Consensus       234 ~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  309 (541)
                              ...+..++..+...   ++-.+...+..+..++..+ +.     ....+++.+...|++.++.|...|+++|
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                    11334444444332   4555555555555555433 21     2236778888899999999999999999


Q ss_pred             hHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHH
Q 009184          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL  389 (541)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~  389 (541)
                      ..+.......    . ..++..|..++.++ ++.+|..|+..|..++...|..++                ..-..+.++
T Consensus       275 ~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~----------------~~n~~ie~l  332 (355)
T 3tjz_B          275 VNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVT----------------ACNLDLENL  332 (355)
T ss_dssp             TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred             HhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHH----------------HHHHHHHHH
Confidence            9886532221    1 24466677788888 999999999999999987776554                233456677


Q ss_pred             hhcCchhHHHHHHHHHH
Q 009184          390 LENAEFDIKKEAAWAIS  406 (541)
Q Consensus       390 l~~~~~~v~~~a~~aL~  406 (541)
                      +.+++..+...|+..|.
T Consensus       333 i~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          333 VTDANRSIATLAITTLL  349 (355)
T ss_dssp             -----------------
T ss_pred             ccCCcHhHHHHHHHHhh
Confidence            78888777776665554

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.95  E-value=4.1e-08  Score=85.84  Aligned_cols=226  Identities=17%  Similarity=0.158  Sum_probs=171.4

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHH
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQ  321 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~  321 (541)
                      .+.+..|.++|...|+.++..++.+|..+....++......-..+++.++.++.+.+..+...|++||+.+..+.+-.-.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45788899999999999999999999999866444444444447899999999999999999999999999988763333


Q ss_pred             HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHH
Q 009184          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEA  401 (541)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a  401 (541)
                      .+.  .+...|..++.++ ++-++.+|+-.++-+--.+.  ..                +++..+..++.+.+.+++..+
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~--~~----------------~V~~~l~sLl~Skd~~vK~ag  170 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLED--SK----------------LVRTYINELVVSPDLYTKVAG  170 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC--CH----------------HHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc--hH----------------HHHHHHHHHHhCCChhHHHHH
Confidence            332  3566788999977 89999999999999833221  11                356678888899999999999


Q ss_pred             HHHHHHhccCCC-HHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHH
Q 009184          402 AWAISNATSGGT-HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE  480 (541)
Q Consensus       402 ~~aL~nl~~~~~-~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  480 (541)
                      +.++.+++.... ++.     -.++++-+-++|+++|+.++..++.++..++..--.        .|..-   +-.+...
T Consensus       171 l~~L~eia~~S~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--------~~~~~---~~~~~~~  234 (265)
T 3b2a_A          171 FCLFLNMLNSSADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--------ENVKI---ELLKISR  234 (265)
T ss_dssp             HHHHHHHGGGCSSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--------SCCHH---HHHHHHH
T ss_pred             HHHHHHhhcccCCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--------HhHHH---HHHHHHH
Confidence            999999987542 221     235788888999999999999999999999865211        11111   1134455


Q ss_pred             HHHHHh-cCCCHHHHHHHHHHHHHh
Q 009184          481 KIESLQ-THDNAEIYEKSVKLLETY  504 (541)
Q Consensus       481 ~l~~L~-~~~~~~i~~~a~~il~~~  504 (541)
                      ....|. -...|.++.+|..+-+..
T Consensus       235 ~v~~l~~~~~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          235 IVDGLVYREGAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             HHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCChhHHHHHHHHHHHH
Confidence            566776 678899999998776543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.90  E-value=7.4e-09  Score=110.65  Aligned_cols=197  Identities=15%  Similarity=0.087  Sum_probs=148.8

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH-HHhhCCCChhhHHHHHHHHhHhhcCC-chh
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL-AEFLMHPSPSVLIPALRTVGNIVTGD-DMQ  319 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L-~~lL~~~~~~v~~~al~~L~nl~~~~-~~~  319 (541)
                      ..++|. +..|++++++.+..||++|++|+. ++.....+...|++..+ ..+|.+++..++..|+++|+||+... ...
T Consensus        34 ~~i~Pl-l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPV-LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHH-HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHH-HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            345554 466899999999999999999996 45556667888888765 56789999999999999999999754 466


Q ss_pred             HHHHHhcCchHHHHHhhcCCC-------------c-------hhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHh
Q 009184          320 TQCVIEYQALPCLLNLLSGNY-------------K-------KSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIE  379 (541)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~  379 (541)
                      ...++..|+++.|..++....             .       ..+...++++|.+++.++.+...           .+..
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~-----------~v~~  180 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHE-----------AVAT  180 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-----------HHHT
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH-----------HHHh
Confidence            677889999999999885310             0       12345678889999988888888           8888


Q ss_pred             cCcHHHHHHHhhcC---chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChH---HHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184          380 ANIIGPLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIK---PLCDLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       380 ~~~l~~L~~~l~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~---~L~~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      .+.++.|+..|.+.   ..+++..|+.+|.+++.. +.+....+.+.+...   .+..+.+..++ .+..++..|.+++.
T Consensus       181 ~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~  258 (684)
T 4gmo_A          181 KQTILRLLFRLISADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT  258 (684)
T ss_dssp             CHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence            89999999988653   368999999999999985 667777777765433   33333334443 34556788888764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.85  E-value=4.8e-08  Score=94.00  Aligned_cols=276  Identities=13%  Similarity=0.066  Sum_probs=165.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhh
Q 009184          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ  240 (541)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  240 (541)
                      ...+++++.+++..++..+...+.+++...++   .++   ++..+.+-+ +++++-++..|+.+++++....      .
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~iL---v~Nsl~kDl-~~~N~~iR~lALRtL~~I~~~~------m  136 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VII---VTSSLTKDM-TGKEDSYRGPAVRALCQITDST------M  136 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GGG---GHHHHHHHH-HSSCHHHHHHHHHHHHHHCCTT------T
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HHH---HHHHHHhhc-CCCcHhHHHHHHHHHhcCCCHH------H
Confidence            35577899999999999999999998866433   222   467777878 6788999999999999997653      5


Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhH
Q 009184          241 VSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQT  320 (541)
Q Consensus       241 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~  320 (541)
                      ...+.+.+...+.+.++.|+..|+.+...+....++...     ++++.+.+++.+.++.+...|+.++..+...+..  
T Consensus       137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--  209 (355)
T 3tjz_B          137 LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--  209 (355)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence            577888899999999999999999999999988776432     7899999999999999999999999988764422  


Q ss_pred             HHHHhcCchHHHHHhhcCCC--chhHHHHHHHHHHHHhcCC-hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184          321 QCVIEYQALPCLLNLLSGNY--KKSIKKEACWTVSNITAGN-REQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI  397 (541)
Q Consensus       321 ~~~~~~~~l~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  397 (541)
                             .+..|+..+....  ++-.+......++.++..+ +...                ..+++.+...|++.++-|
T Consensus       210 -------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~----------------~~~~~~l~~~L~~~~~aV  266 (355)
T 3tjz_B          210 -------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD----------------SPLFDFIESCLRNKHEMV  266 (355)
T ss_dssp             -------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------------------CCCCCSSHHH
T ss_pred             -------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH----------------HHHHHHHHHHHcCCChHH
Confidence                   2333444443321  3433333334333333333 2222                246677777788889999


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcc
Q 009184          398 KKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAE  477 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~  477 (541)
                      .-+|+.++..+.... ...     -..++..|..++.++++.++-.++..|..+....+..-              ..+ 
T Consensus       267 vyEa~k~I~~l~~~~-~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v--------------~~~-  325 (355)
T 3tjz_B          267 VYEAASAIVNLPGCS-AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV--------------TAC-  325 (355)
T ss_dssp             HHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------
T ss_pred             HHHHHHHHHhccCCC-HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH--------------HHH-
Confidence            999999999985521 111     13457778888889999999999999998887665432              222 


Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHH
Q 009184          478 GLEKIESLQTHDNAEIYEKSVKLL  501 (541)
Q Consensus       478 ~~~~l~~L~~~~~~~i~~~a~~il  501 (541)
                       -..|+.+..++|..|...|...+
T Consensus       326 -n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          326 -NLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             ------------------------
T ss_pred             -HHHHHHHccCCcHhHHHHHHHHh
Confidence             24588889999999988886533

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.83  E-value=1.4e-06  Score=72.96  Aligned_cols=217  Identities=16%  Similarity=0.175  Sum_probs=165.3

Q ss_pred             HhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh
Q 009184          113 IRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSP  191 (541)
Q Consensus       113 i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~  191 (541)
                      ++..++..++.+|.++- +.++..|+.++..++...++....++     ..|+-+++ ++.-.+......++|.++...|
T Consensus        29 ~d~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~P  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence            34568899999999887 99999999999999998887766553     45555654 4556666668899999997777


Q ss_pred             hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 009184          192 RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS  271 (541)
Q Consensus       192 ~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~  271 (541)
                      +.-+.     .++.+..-. .-.++.++.+..++|-.+.+..|    ....+++.-+..++.++|..-+..++..++.+.
T Consensus       103 e~v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          103 ELVKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             HHHHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             HHHHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            53222     456666555 55699999999999999998764    445667778888998888766777777777766


Q ss_pred             cCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHH
Q 009184          272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWT  351 (541)
Q Consensus       272 ~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~  351 (541)
                      .+.....     ...+|+|..+|.+.+.-++..|+.+|++++..++..+..+.      ..+.-+.+. +..+++..-..
T Consensus       173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~eg  240 (253)
T 2db0_A          173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEG  240 (253)
T ss_dssp             TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHH
T ss_pred             ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHH
Confidence            6554332     26899999999999999999999999999998887653332      345556666 77788888888


Q ss_pred             HHHHhc
Q 009184          352 VSNITA  357 (541)
Q Consensus       352 L~nl~~  357 (541)
                      |+.++.
T Consensus       241 L~rl~l  246 (253)
T 2db0_A          241 ISRLLL  246 (253)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.80  E-value=9e-07  Score=94.69  Aligned_cols=273  Identities=16%  Similarity=0.121  Sum_probs=185.8

Q ss_pred             HHHHHHhhcCCC--------HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184           75 LPVMVAGVWSND--------SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        75 l~~l~~~L~s~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~  146 (541)
                      +..|.+.|.+++        +.++..|+..|.....+..++        .+++.|..+|.+++ ..++..|+.+|+-+-.
T Consensus       431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~-~~~~~~AalALGli~v  501 (963)
T 4ady_A          431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDS-ATSGEAAALGMGLCML  501 (963)
T ss_dssp             HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhc
Confidence            444555555433        556666777776554332111        24677888888776 6777889999998855


Q ss_pred             CChhHHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184          147 GTSEHTKVVIDHGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (541)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~  225 (541)
                      |+...       .++..|++.+ ...+..+++.++.+|+.+....++         .++.+++.|....++.++..++.+
T Consensus       502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a  565 (963)
T 4ady_A          502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT  565 (963)
T ss_dssp             TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence            44322       1234455443 456789999999999998766654         467788888667788888888888


Q ss_pred             HHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHH
Q 009184          226 LSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLI  303 (541)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~  303 (541)
                      +.--+.+..+      ...++.|++.+. +.+..++..|..+|+.+..+.+         ..++.++.+| .+.++.+|.
T Consensus       566 lglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~  630 (963)
T 4ady_A          566 IALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRC  630 (963)
T ss_dssp             HHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHH
T ss_pred             HHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHH
Confidence            7755544321      344555555543 5578899999999998875554         3456666644 678899999


Q ss_pred             HHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH----HHHHHhhchhhHHHHHh
Q 009184          304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----IQVIMHVHAFSIIAVIE  379 (541)
Q Consensus       304 ~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~~~~~~~~~~~~l~~  379 (541)
                      .|..+||.++.+++..       .+++.|..++.+. +..||..|+.+|+.+..++.+.    +.               
T Consensus       631 gAalALGli~aGn~~~-------~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~gtnna~~~rva---------------  687 (963)
T 4ady_A          631 GTAFALGIACAGKGLQ-------SAIDVLDPLTKDP-VDFVRQAAMIALSMILIQQTEKLNPQVA---------------  687 (963)
T ss_dssp             HHHHHHHHHTSSSCCH-------HHHHHHHHHHTCS-SHHHHHHHHHHHHHHSTTCCTTTCTTHH---------------
T ss_pred             HHHHHHHHhccCCCcH-------HHHHHHHHHccCC-CHHHHHHHHHHHHHHhcCCccccchHHH---------------
Confidence            9999999999887642       2455677788777 9999999999999999865443    22               


Q ss_pred             cCcHHHHHHHhhc--CchhHHHHHHHHHHHhccC
Q 009184          380 ANIIGPLVALLEN--AEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       380 ~~~l~~L~~~l~~--~~~~v~~~a~~aL~nl~~~  411 (541)
                       +++..|......  .++..+--+..|.+-+-.+
T Consensus       688 -~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG  720 (963)
T 4ady_A          688 -DINKNFLSVITNKHQEGLAKFGACVAQGIMNAG  720 (963)
T ss_dssp             -HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred             -HHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence             244456666654  3566777777777666443

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.73  E-value=2e-07  Score=86.08  Aligned_cols=185  Identities=15%  Similarity=0.216  Sum_probs=142.6

Q ss_pred             HHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHH
Q 009184          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI  282 (541)
Q Consensus       204 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~~~~~~~  282 (541)
                      +.+...+ .+.+...+..++..|..++.+.+.........+++.|...+. +.+..++..++.++..++..-........
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4477777 788999999999999999876322112223677888999995 88999999999999999854222222222


Q ss_pred             HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChH
Q 009184          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NRE  361 (541)
Q Consensus       283 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  361 (541)
                       ..+++.++..+.+.+..++..|..+|..++....  .     ..+++.+...+.+. ++.+|..++..|+.+... .+.
T Consensus        97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~-----~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L-----EAQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H-----HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H-----HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence             2588999999999999999999999999987543  1     13577889999988 999999999999997653 333


Q ss_pred             H-HHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          362 Q-IQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       362 ~-~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                      . ..           ..+. .++|.|+..+.+.++++|..|..+++.+..
T Consensus       168 ~~~~-----------~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          168 ALNK-----------KLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GCCH-----------HHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CccH-----------HHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            2 12           2222 689999999999999999999999999875

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.66  E-value=8e-08  Score=88.83  Aligned_cols=186  Identities=13%  Similarity=0.150  Sum_probs=141.1

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhh
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQV  241 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  241 (541)
                      +.+.+.+.+.+...|..++..|..++...+....... ..+++.|...+.++.+..++..++.++..|+..-...-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4578888899999999999999999854322110001 124566666673378899999999999999965422222345


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-ch-h
Q 009184          242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD-DM-Q  319 (541)
Q Consensus       242 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~-~~-~  319 (541)
                      ..++|.++..+.+.+..++..++.++..++....  ..     .+++.+...|++.++.++..++..|+.+.... +. .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            7789999999999999999999999999886543  11     36788889999999999999999999976543 22 1


Q ss_pred             HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      ....+ ..+++.|..+|.+. ++++|..|..+++.++.
T Consensus       170 ~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            22233 36889999999988 99999999999999986

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.59  E-value=4e-07  Score=84.15  Aligned_cols=190  Identities=13%  Similarity=0.167  Sum_probs=139.7

Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHH-HhcCChhHHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH-
Q 009184          121 FVEFLLREDYPQLQFEAAWALTN-IASGTSEHTKVVID-HGAVPIFVKLL-YSPSDDVREQAVWALGNIAGDS--PRCR-  194 (541)
Q Consensus       121 Lv~lL~~~~~~~i~~~a~~~L~~-l~~~~~~~~~~i~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~--~~~r-  194 (541)
                      +.+.+++.+ +.-|.+|+..|.. ++.+.++......+ ..++..|.+.+ ...+..++..|+.+|+.++.+-  +.+. 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            456678887 9999999999999 87643322100000 13466777888 6789999999999999998422  2232 


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG  273 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~  273 (541)
                      .....  +++.++..+ ++....++..+..++..++..- +.........+++.|...|.+.++.++..++.+|..++..
T Consensus       100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            33222  588889988 6677889999999999998864 2211112567899999999999999999999999988754


Q ss_pred             Ch---HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184          274 TN---DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       274 ~~---~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                      ..   ......+...+++.+..++.+.+..+|..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            43   333333424899999999999999999999999998874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.57  E-value=2.1e-06  Score=75.19  Aligned_cols=188  Identities=16%  Similarity=0.197  Sum_probs=149.2

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      +.+..|..+|...+ +.++..|+.+|..+...-+.......-...++.++.++.+.+..+.-.|+.+|..+..+.|-..+
T Consensus        33 ~~l~~L~~LL~dkD-~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           33 RALFLILELAGEDD-ETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            46888999998888 99999999999999986444444443345799999999999999999999999999987774433


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN  275 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~  275 (541)
                      ....  .+.++..++ ...++-+...++..+..+   .+   ......++..+..++.+.|.+++..++.++.+++..+.
T Consensus       112 ~y~K--l~~aL~dli-k~~~~il~~eaae~Lgkl---kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          112 TFLK--AAKTLVSLL-ESPDDMMRIETIDVLSKL---QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHH--HHHHHHHHT-TSCCHHHHHHHHHHHHHC---CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHH--HHHHHHHHh-cCCCchHHHHHHHHhCcC---Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            3333  467788888 688899999999999988   11   12246678889999999999999999999999986543


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184          276 DKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (541)
Q Consensus       276 ~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  316 (541)
                      +.  .++ .+++.-+-.+|++.++.++..|+.++-.+.+..
T Consensus       183 D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          183 DS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            21  011 256777888999999999999999999998764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.54  E-value=3.1e-05  Score=76.24  Aligned_cols=321  Identities=11%  Similarity=0.106  Sum_probs=191.3

Q ss_pred             CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---hhHHHHHhcCCh-HHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          158 HGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSP---RCRDLVLSQGGL-VPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       158 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---~~r~~i~~~g~i-~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ..++..++.+|.. ...++...++..+..+..+++   .....+...... ..+........+.-....++.++..++..
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            4566788888875 778888989999988887766   222232322211 22333332444555556666666666544


Q ss_pred             CCCCChhhhhchHH--HHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHh--CcHHHHHHhhC----C-------
Q 009184          233 KPQPPFDQVSPALP--ALAHLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVFPRLAEFLM----H-------  296 (541)
Q Consensus       233 ~~~~~~~~~~~~l~--~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~l~~L~~lL~----~-------  296 (541)
                      .+. .......++.  -+...|.. ++...+.-++.+|..|......+ ..+.+.  +.++.++.++.    +       
T Consensus       156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            322 2333333444  34444544 23444556777777777655433 334433  24555554332    1       


Q ss_pred             ----C--ChhhHHHHHHHHhHhhcCCchhHHHHHhcCch--HHHHHhhcCCCchhHHHHHHHHHHHHhcCCh----HHHH
Q 009184          297 ----P--SPSVLIPALRTVGNIVTGDDMQTQCVIEYQAL--PCLLNLLSGNYKKSIKKEACWTVSNITAGNR----EQIQ  364 (541)
Q Consensus       297 ----~--~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~  364 (541)
                          +  ...++..++.|+.-++...+ ....+...++.  ..|+.+++.....++.+-++.+|.|+....+    ..+.
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                1  24567788889988876444 55555555543  5667777766578899999999999998542    1122


Q ss_pred             HHHhhchhhHHH-HHhcCcHHHHHHHhhc---CchhHHHHHHHHHHHh---------------------ccCCCHHHH-H
Q 009184          365 VIMHVHAFSIIA-VIEANIIGPLVALLEN---AEFDIKKEAAWAISNA---------------------TSGGTHEQI-K  418 (541)
Q Consensus       365 ~~~~~~~~~~~~-l~~~~~l~~L~~~l~~---~~~~v~~~a~~aL~nl---------------------~~~~~~~~~-~  418 (541)
                                 . ++..++ +.++..|..   .|+++....-...-.+                     ..+ +|-+. .
T Consensus       313 -----------~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W-SP~H~se  379 (480)
T 1ho8_A          313 -----------QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDN  379 (480)
T ss_dssp             -----------HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCH
T ss_pred             -----------HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc-CCCccch
Confidence                       2 223344 445555554   3555543322221111                     111 11111 1


Q ss_pred             HHH--------H--cCChHHHhhhcCC----------CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcch
Q 009184          419 FLV--------I--QGCIKPLCDLLVC----------PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEG  478 (541)
Q Consensus       419 ~l~--------~--~~~i~~L~~lL~~----------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  478 (541)
                      .+.        +  ..+++.|+.+|++          .|+.+...|+.=|..+++..+..           +..+++.||
T Consensus       380 ~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-----------r~i~~~lg~  448 (480)
T 1ho8_A          380 GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-----------IDVLDKTGG  448 (480)
T ss_dssp             HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-----------HHHHHHHSH
T ss_pred             hHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-----------hHHHHHcCc
Confidence            222        1  1347888888873          36778888888888888877653           557888999


Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184          479 LEKIESLQTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       479 ~~~l~~L~~~~~~~i~~~a~~il~~~~  505 (541)
                      .+.+-+|.+|+|++|+..|..-++++.
T Consensus       449 K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          449 KADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988777653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.52  E-value=9.3e-07  Score=81.67  Aligned_cols=194  Identities=10%  Similarity=0.096  Sum_probs=140.7

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-hhCCChhhHHHHHh-cCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC-CCCh-
Q 009184          163 IFVKLLYSPSDDVREQAVWALGN-IAGDSPRCRDLVLS-QGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP-QPPF-  238 (541)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~r~~i~~-~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~-  238 (541)
                      .+...+.+.+..-|..++..|.. ++...+.......+ ...+..|...+.++.+..++..++.++..|+.+-. ..-. 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45667788999999999999999 87543332100001 12355666667567788999999999999997643 2222 


Q ss_pred             hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch
Q 009184          239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM  318 (541)
Q Consensus       239 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~  318 (541)
                      .....++|.++..+......|+..+..++..++...+.....-.-..+++.|...|++.++.++..++.+|+.++.....
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            45677899999999988899988888888777643211000000013677888899999999999999999999876553


Q ss_pred             ---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          319 ---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       319 ---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                         .....+...+++.|..++.+. ++.+|..|..+++.++.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence               222333357999999999998 99999999999999986

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.46  E-value=7.9e-05  Score=82.64  Aligned_cols=340  Identities=11%  Similarity=0.074  Sum_probs=189.0

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHH-HhhcCCCcHHHHHHHHHHHHHHhcCC---h--hHHHHHHh
Q 009184           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT---S--EHTKVVID  157 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv-~lL~~~~~~~i~~~a~~~L~~l~~~~---~--~~~~~i~~  157 (541)
                      +.++++...++.++...++   .-++..+++.++++.+. .+|..   ++++..|+.||..+....   +  +....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            3456677778888888875   44577788889999999 88853   789999999999998732   2  12211111


Q ss_pred             --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhCC-------ChhhHHHHHhcCChHHHHHhhcCCC
Q 009184          158 --HGAVPIF--------------VKLLYSPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQP  214 (541)
Q Consensus       158 --~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~~-------~~~~r~~i~~~g~i~~Ll~~l~~~~  214 (541)
                        .+.++.+              ...-...+.+.....+..+..+...       .+..+..+.  .++..++..- ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence              0111111              1111223466666666666554421       122222211  0123344432 456


Q ss_pred             hhhHHHHHHHHHHhhhcCCC--CCChhhhh----chHHHHHHhhccCC--------------------hh-HHHHHH-HH
Q 009184          215 KLSMLRNATWTLSNFCRGKP--QPPFDQVS----PALPALAHLIHSND--------------------DE-VLTDAC-WA  266 (541)
Q Consensus       215 ~~~~~~~a~~~L~~l~~~~~--~~~~~~~~----~~l~~L~~lL~~~d--------------------~~-v~~~a~-~~  266 (541)
                      +.++...++.....|....-  ........    .+++.++.-+..+.                    ++ ...... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            78888888887777765321  11222233    34444444443322                    00 111111 22


Q ss_pred             HHHhccCC-hHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC----
Q 009184          267 LSYLSDGT-NDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----  339 (541)
Q Consensus       267 L~~l~~~~-~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----  339 (541)
                      |.+++.-. ++...     -+++.+...+..  .+|..++.+++++|.++.+.......-.-..+++.|+.++.+.    
T Consensus       437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            22222111 11111     123344444443  5799999999999999987765433233346788888888641    


Q ss_pred             CchhHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHH
Q 009184          340 YKKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQ  416 (541)
Q Consensus       340 ~~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~  416 (541)
                      ....++..++|++|..+.   ..++...                .++..|+..+..+++.++..|++++.+++..+....
T Consensus       512 ~k~~v~~t~~~~lGry~~wl~~~~~~L~----------------~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l  575 (1023)
T 4hat_C          512 NKAVVASDIMYVVGQYPRFLKAHWNFLR----------------TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHF  575 (1023)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHCHHHHH----------------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHH----------------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            144566788999998876   2333333                356667777776778999999999999987433221


Q ss_pred             HH--------HHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhh
Q 009184          417 IK--------FLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG  455 (541)
Q Consensus       417 ~~--------~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~  455 (541)
                      ..        ++  ..++..+...+..-+++-...+.+++..++...
T Consensus       576 ~~~~~~e~~p~~--~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~  620 (1023)
T 4hat_C          576 VIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1023)
T ss_dssp             HSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             hccCCCCCchhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence            10        11  112233333334445555667777777777653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.40  E-value=0.00014  Score=71.61  Aligned_cols=320  Identities=11%  Similarity=0.075  Sum_probs=192.3

Q ss_pred             CHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCC---CcHHHHHhcC-CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERS---PPIEEVIRSG-VVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (541)
Q Consensus        74 ~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~---~~~~~~i~~g-~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~  148 (541)
                      ....+++.|.. ...++....+..+..++... .   .....+.+.. ....+.....+.+++-....+..+++.++..+
T Consensus        78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC-cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            56778888874 66788888888888888763 2   1223333322 22223332233443555566666666665433


Q ss_pred             hh---HHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcC--ChHHHHHhhc-----------
Q 009184          149 SE---HTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQG--GLVPLLAQLN-----------  211 (541)
Q Consensus       149 ~~---~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~i~~Ll~~l~-----------  211 (541)
                      +.   ....++..   +-++..|.. ++...+..++.+|..+..... +|..+.+.+  .+++++.++.           
T Consensus       157 ~~~~~~l~~l~~~---~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          157 LHNVKLVEKLLKN---NNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TCCHHHHHHHHHC---HHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             CccHhHHHHHhhh---HHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            22   11222211   134444544 344556678888888887655 888876543  3566654432           


Q ss_pred             -----CCChhhHHHHHHHHHHhhhcCCCCCChhhhhch--HHHHHHhhcc-CChhHHHHHHHHHHHhccCCh----HHHH
Q 009184          212 -----GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA--LPALAHLIHS-NDDEVLTDACWALSYLSDGTN----DKIQ  279 (541)
Q Consensus       212 -----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--l~~L~~lL~~-~d~~v~~~a~~~L~~l~~~~~----~~~~  279 (541)
                           ......++..++.+++-|+...+........++  ++.|+..++. ..+++..-++.++.|+.....    ....
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~  312 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK  312 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence                 111456788889999999887532222222222  3556666664 568899999999999987652    2222


Q ss_pred             -HHHHhCcHHHHHHhhCC---CChhhHHHHHH-------HHhHhhc--------------CCchhHH-HHH---------
Q 009184          280 -AVIEAGVFPRLAEFLMH---PSPSVLIPALR-------TVGNIVT--------------GDDMQTQ-CVI---------  324 (541)
Q Consensus       280 -~~~~~g~l~~L~~lL~~---~~~~v~~~al~-------~L~nl~~--------------~~~~~~~-~~~---------  324 (541)
                       .++..++ ..++..|..   .++++..-.-.       .+..+++              -++.+.. .+.         
T Consensus       313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence             3333445 445555533   33333222111       1111111              1121211 111         


Q ss_pred             -hcCchHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCc
Q 009184          325 -EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAE  394 (541)
Q Consensus       325 -~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~  394 (541)
                       +..++..|+.+|.+         +.++.+..-||.=++.++...|....           .+-+.|+=..+++++.++|
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-----------i~~~lg~K~~VM~Lm~h~d  460 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-----------VLDKTGGKADIMELLNHSD  460 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-----------HHHHHSHHHHHHHHTSCSS
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-----------HHHHcCcHHHHHHHhcCCC
Confidence             23568889999973         22788899999999999998788776           6668899999999999999


Q ss_pred             hhHHHHHHHHHHHhcc
Q 009184          395 FDIKKEAAWAISNATS  410 (541)
Q Consensus       395 ~~v~~~a~~aL~nl~~  410 (541)
                      ++||.+|+.|+..+..
T Consensus       461 ~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          461 SRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.38  E-value=6.1e-08  Score=80.16  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=92.8

Q ss_pred             cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (541)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (541)
                      ...++.++.+|++++ +.++..|+++|+.+...            .++.|+.+|.++++.+|..|+++|+++..  +   
T Consensus        11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---   72 (131)
T 1te4_A           11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---   72 (131)
T ss_dssp             ----------CCSSC-CCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred             cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence            456888999999888 89999999999876431            26889999999999999999999999852  1   


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYL  270 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  270 (541)
                            ..++.|+..+ .++++.++..++|+|..+..          ...++.|..++.++++.++..++++|..+
T Consensus        73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  2478888888 67889999999999998852          45788999999988999999999988653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.34  E-value=1.6e-07  Score=77.70  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=93.5

Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC
Q 009184          158 HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP  237 (541)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~  237 (541)
                      ...++.|..+|.++++.+|..|+++|+.+...            .++.|+..| .++++.++..++|+|.++..      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC------
Confidence            35678899999999999999999999876321            257888888 67899999999999998853      


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                          ...++.|..++.++++.|+..++|+|+.+..           .+.++.|..++.++++.++..|+.+|+.|
T Consensus        72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                3468899999999999999999999998862           13578888999999999999999999864

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.32  E-value=8.1e-05  Score=83.22  Aligned_cols=332  Identities=11%  Similarity=0.002  Sum_probs=181.3

Q ss_pred             HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhc---------------CCCcHHHHHHHHHHHHHHhcCCh--h
Q 009184           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL---------------REDYPQLQFEAAWALTNIASGTS--E  150 (541)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~---------------~~~~~~i~~~a~~~L~~l~~~~~--~  150 (541)
                      .++..++.++...+.....+..   ....+++.+.. |.               ..++++++..|+.++..+....+  +
T Consensus       204 ~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~  279 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHN  279 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGG
T ss_pred             hHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccc
Confidence            6777888888776652101211   23445666666 41               11237899999999999997432  1


Q ss_pred             HHHHHHhCCChHHHHH-------hhCCCC---HHHHHHHHHHHHHhhCCChh-hH-----------HHHHhcCChHHHHH
Q 009184          151 HTKVVIDHGAVPIFVK-------LLYSPS---DDVREQAVWALGNIAGDSPR-CR-----------DLVLSQGGLVPLLA  208 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~-------lL~~~~---~~v~~~a~~~L~nl~~~~~~-~r-----------~~i~~~g~i~~Ll~  208 (541)
                      ....+.  .+++.++.       .+...+   .+.....+..+..++..... +.           ..+.  ..++.++.
T Consensus       280 ~~~~~~--~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~  355 (971)
T 2x1g_F          280 YPKTAF--VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEILH  355 (971)
T ss_dssp             CHHHHH--HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHHH
T ss_pred             cHHHHH--HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHHH
Confidence            111111  12333332       123334   25666667777666533221 11           1111  13444444


Q ss_pred             hhcC----CChhhHHHHHHHHHHhhhcCC--------CCCCh----hhhhchHHHHHHhhccCCh---------------
Q 009184          209 QLNG----QPKLSMLRNATWTLSNFCRGK--------PQPPF----DQVSPALPALAHLIHSNDD---------------  257 (541)
Q Consensus       209 ~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~----~~~~~~l~~L~~lL~~~d~---------------  257 (541)
                      ....    ..+..+...+++.+..+++..        .....    .....+++.++..+..++.               
T Consensus       356 ~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~  435 (971)
T 2x1g_F          356 CTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFR  435 (971)
T ss_dssp             HHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHH
T ss_pred             HHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHH
Confidence            4422    347888999999998887621        11111    1223445555554432211               


Q ss_pred             hHHHHHHHHHHHhccCCh-HHHHHHHHhCcHHHHHHhhCC-----CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHH
Q 009184          258 EVLTDACWALSYLSDGTN-DKIQAVIEAGVFPRLAEFLMH-----PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC  331 (541)
Q Consensus       258 ~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~l~~L~~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~  331 (541)
                      ..+..+..++..++..-. .....     +++.+...+..     .+|..++.++.+++.++.+........+. .+++.
T Consensus       436 ~~R~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~  509 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRV  509 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHH
Confidence            234555556655554322 22221     22333333332     67889999999999998876543211111 13332


Q ss_pred             HHHhhcCCCchhHHHHHHHHHHHHhcC---ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHh
Q 009184          332 LLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNA  408 (541)
Q Consensus       332 L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl  408 (541)
                      +..+..++.++.+|..++|+++.++.-   .+....                .+++.|+..+ +  +.++..|++++.++
T Consensus       510 l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~----------------~vl~~l~~~l-~--~~v~~~A~~al~~l  570 (971)
T 2x1g_F          510 LAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP----------------PAINLLVRGL-N--SSMSAQATLGLKEL  570 (971)
T ss_dssp             HHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH----------------HHHHHHHHHH-H--SSCHHHHHHHHHHH
T ss_pred             HHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH----------------HHHHHHHHHh-C--hHHHHHHHHHHHHH
Confidence            222221212789999999999999861   122222                3566777777 2  78999999999999


Q ss_pred             ccCCCHHHHHHHHHcCChHHHhhhcCC--CChHHHHHHHHHHHHHHHh
Q 009184          409 TSGGTHEQIKFLVIQGCIKPLCDLLVC--PDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       409 ~~~~~~~~~~~l~~~~~i~~L~~lL~~--~~~~~~~~~l~~L~~l~~~  454 (541)
                      +.........++  ..++..|..++..  -+.+....+++++..++..
T Consensus       571 ~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          571 CRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            975433322222  2466677777776  3567888888998888764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.31  E-value=4.1e-05  Score=71.58  Aligned_cols=205  Identities=17%  Similarity=0.102  Sum_probs=144.8

Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh
Q 009184          246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (541)
Q Consensus       246 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~  325 (541)
                      ..++.-|.+.+.+.+..++..|..+...+.+....++..+++..|+......+..++..++++++++..+.+.....+-.
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            44666677788888999999999865566667888999999999999999999999999999999999865544333335


Q ss_pred             cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh---cCchhHHHHHH
Q 009184          326 YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE---NAEFDIKKEAA  402 (541)
Q Consensus       326 ~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~  402 (541)
                      ..++..+..++.+. ...|.+.|..+|-.++..++.... ++....-.+-.--....+..|+.+|.   +.+.+++..|.
T Consensus       201 ~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~-lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          201 SDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAP-LFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccch-HHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            67889999999976 899999999999999875543332 00000000000001124778999997   67899999999


Q ss_pred             HHHHHhccCCC-HH----HHHHHHHcCChHHHhhhcCCC--ChHHHHHHHHHHHHHHH
Q 009184          403 WAISNATSGGT-HE----QIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILK  453 (541)
Q Consensus       403 ~aL~nl~~~~~-~~----~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l~~L~~l~~  453 (541)
                      ..|..+..... .+    ....+-+.|+-..+...++..  ++++..+ +.+....++
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q-l~iyE~~~~  335 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ-LVLYENALK  335 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH-HHHHHHHhh
Confidence            88888876543 23    233344556666677777765  6676665 355555443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.31  E-value=6.2e-05  Score=81.69  Aligned_cols=302  Identities=13%  Similarity=0.137  Sum_probs=207.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC---hh
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT---SE  150 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~---~~  150 (541)
                      .+..+++.+...+...+..++..+..++.......   .+..+++..|.+.+.+.. ..  +.|+.++..|+...   +.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~   88 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPS   88 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTT
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCC
Confidence            44556666665555566778888888776431111   111257888888887765 23  88999999998532   12


Q ss_pred             HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      .-..++  +.+|.++..+.+....++..|..++..++..-+...-    ...++.|+..|........+..++.++..|+
T Consensus        89 ~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~  162 (986)
T 2iw3_A           89 VEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMV  162 (986)
T ss_dssp             THHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             cccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            222233  5789999998888899999998888888744332211    2358889888855557889999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (541)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  309 (541)
                      ...+..-......++|.+...+....++|...+..++..+|.. ....+.     ..+|.|++.+.+++.  ...++..|
T Consensus       163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l  235 (986)
T 2iw3_A          163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLL  235 (986)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHH
T ss_pred             HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHh
Confidence            7654333334578888888888888999999888888777632 111111     678999999988753  55667777


Q ss_pred             hHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc--CChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA--GNREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      +.-+.-..... ..+ +=.+|.|.+-|... ...+++.++-++.|+|.  .++....           .++- .++|.|.
T Consensus       236 ~~~tfv~~v~~-~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~-----------~f~~-~l~p~~~  300 (986)
T 2iw3_A          236 GATTFVAEVTP-ATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIA-----------PFLG-KLLPGLK  300 (986)
T ss_dssp             TTCCCCSCCCH-HHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHH-----------HHHT-TTHHHHH
T ss_pred             hcCeeEeeecc-hhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHh-----------hhhh-hhhhHHH
Confidence            66544332211 111 12467777888777 78899999999999998  5666665           4443 6777777


Q ss_pred             HHhhc-CchhHHHHHHHHHHHhc
Q 009184          388 ALLEN-AEFDIKKEAAWAISNAT  409 (541)
Q Consensus       388 ~~l~~-~~~~v~~~a~~aL~nl~  409 (541)
                      ..... .+|++|..|..|+..+.
T Consensus       301 ~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          301 SNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCHHHHHHHHHHHHHHH
Confidence            76665 58999988888887773

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.26  E-value=0.00071  Score=75.37  Aligned_cols=343  Identities=10%  Similarity=0.048  Sum_probs=195.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC------hh
Q 009184           77 VMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT------SE  150 (541)
Q Consensus        77 ~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~------~~  150 (541)
                      .++..+.+++..++...+.++..++..+ -| .++   .++++.|++++++++ +..+..++.+|..++...      ++
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d-~p-~~W---p~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~  162 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSD-FP-DRW---PTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE  162 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHH-ST-TTC---TTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhh-Cc-cch---hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence            4566666666888999999999988753 12 111   457999999998877 788899999999998732      12


Q ss_pred             HHHH---HHhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CChhhHHHHHhcCChHHHHHhh
Q 009184          151 HTKV---VIDHGAVPIFVK-------LLYSPSD---------DVREQAVWALGNIAG-DSPRCRDLVLSQGGLVPLLAQL  210 (541)
Q Consensus       151 ~~~~---i~~~g~i~~L~~-------lL~~~~~---------~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~i~~Ll~~l  210 (541)
                      .+..   ++. ...+.+++       .+..+..         ++...++.+++++.. +.+..-...+ ...++.+...+
T Consensus       163 ~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l  240 (960)
T 1wa5_C          163 LFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYL  240 (960)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHH
Confidence            2221   121 12333333       2444221         233346666666653 2232111111 11234445555


Q ss_pred             cCC-----Ch---------hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-----cCChhHHHHHHHHHHHhc
Q 009184          211 NGQ-----PK---------LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-----SNDDEVLTDACWALSYLS  271 (541)
Q Consensus       211 ~~~-----~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-----~~d~~v~~~a~~~L~~l~  271 (541)
                      ...     .+         ..++..++.++..+....+..-......+++....++.     ..++.+...++..+..++
T Consensus       241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~  320 (960)
T 1wa5_C          241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT  320 (960)
T ss_dssp             SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence            321     11         24567777788777654321111223455555566654     335678888888888776


Q ss_pred             cCChHHHHHHHH-hCcHHH-----HHHhhC-----------------------CCChhhHHHHHHHHhHhhcCCchhHHH
Q 009184          272 DGTNDKIQAVIE-AGVFPR-----LAEFLM-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQC  322 (541)
Q Consensus       272 ~~~~~~~~~~~~-~g~l~~-----L~~lL~-----------------------~~~~~v~~~al~~L~nl~~~~~~~~~~  322 (541)
                      ..... .. +.. .+.++.     ++..|.                       +.....|..|..+|..++......   
T Consensus       321 ~~~~~-~~-~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---  395 (960)
T 1wa5_C          321 RIPKY-FE-IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---  395 (960)
T ss_dssp             TSHHH-HG-GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---
T ss_pred             CcHhH-HH-HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---
Confidence            53221 11 110 112222     222321                       111256777888888887654422   


Q ss_pred             HHhcCchHHHHHhhc------CCCchhHHHHHHHHHHHHhcCC--hH----------HHHHHHhhchhhHHHHHhcCcHH
Q 009184          323 VIEYQALPCLLNLLS------GNYKKSIKKEACWTVSNITAGN--RE----------QIQVIMHVHAFSIIAVIEANIIG  384 (541)
Q Consensus       323 ~~~~~~l~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~~~~~~~~~~~~l~~~~~l~  384 (541)
                      ++ ..+++.+...+.      +. +...|..|+.+++.++.+.  ..          ...           .++...++|
T Consensus       396 v~-~~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~-----------~~l~~~v~p  462 (960)
T 1wa5_C          396 VT-NIFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV-----------DFFTKEIAP  462 (960)
T ss_dssp             HH-HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH-----------HHHHHHTHH
T ss_pred             HH-HHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHH-----------HHHHHHhHH
Confidence            11 123445555555      34 6678899999999998531  11          122           222222333


Q ss_pred             HHHHHhhcC---chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          385 PLVALLENA---EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       385 ~L~~~l~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                          .+.++   ++.+|..|+|+++.++..-.++...     .+++.++..|.++++.++..++.+|.+++..
T Consensus       463 ----~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          463 ----DLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             ----HHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             ----HhcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence                34555   8899999999999998764443322     3577888888888888999999999999874

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.26  E-value=0.00014  Score=81.14  Aligned_cols=344  Identities=13%  Similarity=0.092  Sum_probs=187.2

Q ss_pred             cCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCC
Q 009184          126 LREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL---YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGG  202 (541)
Q Consensus       126 ~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~  202 (541)
                      .+.+ +..++.++++++.++.+..+..     ...++.++..+   ..+++.++..++|+++.++..-.... ..+. .+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HH
Confidence            4444 8999999999999998643211     12233344333   33578899999999999874322111 2222 47


Q ss_pred             hHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 009184          203 LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ  279 (541)
Q Consensus       203 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~l~~~~~-~~~~  279 (541)
                      ++.++..| .+  +.++..|++++.++|+.....-......+++.+..++...  +.+.+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            88888888 33  7899999999999997543222233455666666777653  56788888889988875432 3333


Q ss_pred             HHHHhCcHHHHHHhh----CCC-ChhhHH---HHHHHHhHhhcCCch---------------------hHHHHHhcCchH
Q 009184          280 AVIEAGVFPRLAEFL----MHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCVIEYQALP  330 (541)
Q Consensus       280 ~~~~~g~l~~L~~lL----~~~-~~~v~~---~al~~L~nl~~~~~~---------------------~~~~~~~~~~l~  330 (541)
                      ..++ .+++.+...+    ..+ ++..+.   ..+.+|+.+...-..                     ..-..+...+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            2332 3444444433    222 333333   444555444432110                     001112234556


Q ss_pred             HHHHhhcCC-CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-chhHHHHHHHHHHHh
Q 009184          331 CLLNLLSGN-YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-EFDIKKEAAWAISNA  408 (541)
Q Consensus       331 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~aL~nl  408 (541)
                      .+..++... .+..+...++.++..++..-.+...           .++. .+++.++..+... .+    ..++.+..+
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----------~~l~-~~~~~l~~~~~~~~~~----~~l~l~~~l  750 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----------PMVP-QLCEMLGRMYSTIPQA----SALDLTRQL  750 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----------GGHH-HHHHHHHHHHHHSCCH----HHHHHHHHH
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----------ccHH-HHHHHHHHHHHcCCcc----HHHHHHHHH
Confidence            666665421 1568889999999988652221111           1100 1222233322221 22    233444444


Q ss_pred             cc--CCCH---HHHHHHHHcCChHHHhhhcC---CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHH
Q 009184          409 TS--GGTH---EQIKFLVIQGCIKPLCDLLV---CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLE  480 (541)
Q Consensus       409 ~~--~~~~---~~~~~l~~~~~i~~L~~lL~---~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  480 (541)
                      +.  +...   .....+.+ .++..+..++.   ..+++++......+..++......-..    .......     .++
T Consensus       751 i~~f~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~----~~~~~~~-----i~~  820 (963)
T 2x19_B          751 VHIFAHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC----ERLDVKA-----VFQ  820 (963)
T ss_dssp             HHHHTTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC----TTSCHHH-----HHH
T ss_pred             HHHhCCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC----CcccHHH-----HHH
Confidence            33  2211   11211111 12333333332   246899999999999999876543210    0100111     233


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 009184          481 KIESLQTHDNAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       481 ~l~~L~~~~~~~i~~~a~~il~~~~~~  507 (541)
                      .+.....+++.++...+.+.+.+++..
T Consensus       821 ~~~~~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          821 CAVLALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence            344445689999999999999887753

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.17  E-value=0.00013  Score=81.59  Aligned_cols=304  Identities=13%  Similarity=0.120  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY-SPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~  209 (541)
                      +..++.|+++++.++.+..+.....+. .+++.+..+.. ++++.++..++|+++.++..-....+.+ . .+++.++..
T Consensus       478 w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl~~l~~~  554 (971)
T 2x1g_F          478 WTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-P-PAINLLVRG  554 (971)
T ss_dssp             CHHHHHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-H-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHHHHHHHH
Confidence            789999999999998865432211111 12332222322 3489999999999999874211111111 1 145556666


Q ss_pred             hcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCC-hHHHHHHHHh--
Q 009184          210 LNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGT-NDKIQAVIEA--  284 (541)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~-~~~~~~~~~~--  284 (541)
                      | .   +.++..|++++.++|+.....-......++..+..++..  .+.+.+..++.+++.++... .+.....+..  
T Consensus       555 l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll  630 (971)
T 2x1g_F          555 L-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV  630 (971)
T ss_dssp             H-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             h-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            6 2   678999999999999753211122335556666677766  35678888888888886532 1222222221  


Q ss_pred             -CcHHHHHHhhCCC--ChhhHHH---HHHHHhHhhcCCc-------------hhHHHHHhcCchHHHHHhhcCC-CchhH
Q 009184          285 -GVFPRLAEFLMHP--SPSVLIP---ALRTVGNIVTGDD-------------MQTQCVIEYQALPCLLNLLSGN-YKKSI  344 (541)
Q Consensus       285 -g~l~~L~~lL~~~--~~~v~~~---al~~L~nl~~~~~-------------~~~~~~~~~~~l~~L~~lL~~~-~~~~v  344 (541)
                       .++..+..++...  +...+..   ++..|+.+...-.             ... ..+-..+++.+..++... .+..+
T Consensus       631 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~l~~~~~~~~v  709 (971)
T 2x1g_F          631 SPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPV-LLVMQRTMPIFKRIAEMWVEEIDV  709 (971)
T ss_dssp             HHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CC-HHHHHTTHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCch-HHHHHHHHHHHHHHHHhccccHHH
Confidence             2333333444433  3322333   3333443332111             011 112346788887777532 26689


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC--CCHH---HHHH
Q 009184          345 KKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG--GTHE---QIKF  419 (541)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~--~~~~---~~~~  419 (541)
                      ...++++++.++..-.....           .++. .+++.|+..+.....   ..+++.++.++..  .++.   ....
T Consensus       710 ~e~~~~~~~~~~~~~~~~~~-----------p~l~-~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~  774 (971)
T 2x1g_F          710 LEAACSAMKHAITNLRSSFQ-----------PMLQ-DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQ  774 (971)
T ss_dssp             HHHHHHHHHHHHHHHHC--C-----------THHH-HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhcc-----------ccHH-HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            99999999998763111122           1111 233444444433221   3366777776642  2211   1222


Q ss_pred             HHHcCChHHHhhhcCC-------CChHHHHHHHHHHHHHHHhhHhh
Q 009184          420 LVIQGCIKPLCDLLVC-------PDPRIVTVCLEGLENILKVGEAE  458 (541)
Q Consensus       420 l~~~~~i~~L~~lL~~-------~~~~~~~~~l~~L~~l~~~~~~~  458 (541)
                      +.. .++..+..++..       .+++++......+..++...+..
T Consensus       775 ~~~-~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~  819 (971)
T 2x1g_F          775 LLR-EFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV  819 (971)
T ss_dssp             HHH-HHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred             HHH-HHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence            221 223333444433       36788888888888888776653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.15  E-value=0.0011  Score=74.62  Aligned_cols=339  Identities=11%  Similarity=0.090  Sum_probs=182.5

Q ss_pred             CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHH-hhcCCCcHHHHHHHHHHHHHHhcCC--hh---HHHHHHh-
Q 009184           85 NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVE-FLLREDYPQLQFEAAWALTNIASGT--SE---HTKVVID-  157 (541)
Q Consensus        85 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~-lL~~~~~~~i~~~a~~~L~~l~~~~--~~---~~~~i~~-  157 (541)
                      +++.++..++.++...++-   -+...+.+..+++.+.+ ++.  + ++++..|+.||..+....  +.   ....+.. 
T Consensus       207 ~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          207 SSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            4567788888888877652   23444566777887773 443  4 899999999999998742  21   1111111 


Q ss_pred             -CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHhcCChHHHHHhhcCCCh
Q 009184          158 -HGAVPIFVK-LL-------------YSPSDDVREQAVWALGNIAG-------DSPRCRDLVLSQGGLVPLLAQLNGQPK  215 (541)
Q Consensus       158 -~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~r~~i~~~g~i~~Ll~~l~~~~~  215 (541)
                       .+.+..+.. ++             ...+.+.....+..+..+..       ..+..+..+  ..+++.++... ..++
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             112222211 11             12344444455555544321       111122221  12455555555 4557


Q ss_pred             hhHHHHHHHHHHhhhc----CCCCCC--hhhhhchHHHHHHhhccCC-------------------h---hHHHHHHHHH
Q 009184          216 LSMLRNATWTLSNFCR----GKPQPP--FDQVSPALPALAHLIHSND-------------------D---EVLTDACWAL  267 (541)
Q Consensus       216 ~~~~~~a~~~L~~l~~----~~~~~~--~~~~~~~l~~L~~lL~~~d-------------------~---~v~~~a~~~L  267 (541)
                      .++...++..+..+++    ......  ......+++.++..+..++                   .   .....+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            7888888888888877    321111  1233445555555443211                   0   1122344455


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC----Cc
Q 009184          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN----YK  341 (541)
Q Consensus       268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~  341 (541)
                      ..++......   ++ .-+.+.+-..+.  ..+|..+..+++++|.++.+.......-.-..+++.|..+....    .+
T Consensus       438 ~~l~~~~~~~---~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~  513 (1049)
T 3m1i_C          438 VYLTHLNVID---TE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK  513 (1049)
T ss_dssp             HHHHHHCHHH---HH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred             HHHHccCHHH---HH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence            5554222211   11 112344444454  36788999999999999865443321111123555555544321    14


Q ss_pred             hhHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHH-
Q 009184          342 KSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQI-  417 (541)
Q Consensus       342 ~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~-  417 (541)
                      +.++..++|+++.++.   ..+....                .+++.++..+.++++.|+..|++++.+++..+..... 
T Consensus       514 ~~v~~~~~~~lgry~~~~~~~~~~l~----------------~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~  577 (1049)
T 3m1i_C          514 AVVASDIMYVVGQYPRFLKAHWNFLR----------------TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI  577 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHH----------------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHH----------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5666679999998875   1222222                4677788888888899999999999999874332211 


Q ss_pred             -------HHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          418 -------KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       418 -------~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                             .++  ..++..+..++..-+.+-...+.+++..++..
T Consensus       578 ~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~  619 (1049)
T 3m1i_C          578 QQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1049)
T ss_dssp             CCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence                   111  12333444444444444455566676666643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.15  E-value=0.00039  Score=75.51  Aligned_cols=300  Identities=17%  Similarity=0.162  Sum_probs=203.2

Q ss_pred             HHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhHHHH
Q 009184          121 FVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS---PRCRDLV  197 (541)
Q Consensus       121 Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~---~~~r~~i  197 (541)
                      +++-++..+ ..-+..++..+.++..+.....  .+..+++..|.+.+.+....  +.|+.++..||...   +..-..+
T Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            444455544 3445667777777766431110  11125667777777764333  99999999999433   2232333


Q ss_pred             HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCChH
Q 009184          198 LSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSN-DDEVLTDACWALSYLSDGTND  276 (541)
Q Consensus       198 ~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~l~~~~~~  276 (541)
                      +  +.++.++..+ .+....++..|..++..+...-+.   .....++|.|+..|.+. .......++.++..++...++
T Consensus        94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence            3  3678888887 666778888888888888765422   23478899999988765 688999999999999976555


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHH
Q 009184          277 KIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNI  355 (541)
Q Consensus       277 ~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl  355 (541)
                      .... .-..++|.+...+.+..+++...|..++..+|..-+ ...     ...+|.|++.+.++ +.  ..++...|+.-
T Consensus       168 ~~~~-~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p-~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          168 QVAL-RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADP-TE--VPETVHLLGAT  238 (986)
T ss_dssp             HHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCT-TH--HHHHHHHHTTC
T ss_pred             HHHH-hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcCh-hh--hHHHHHHhhcC
Confidence            4332 223789999999999999999999999988886322 111     35788999999877 33  34555555544


Q ss_pred             hc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC-CHHHHHHHHHcCChHHHhh
Q 009184          356 TA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG-THEQIKFLVIQGCIKPLCD  431 (541)
Q Consensus       356 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~  431 (541)
                      +.   -......                =++|.|.+-|......+++.++-.+.|++.-- ++.....++ -.+++.+..
T Consensus       239 tfv~~v~~~~l~----------------~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~  301 (986)
T 2iw3_A          239 TFVAEVTPATLS----------------IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKS  301 (986)
T ss_dssp             CCCSCCCHHHHH----------------HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHH
T ss_pred             eeEeeecchhHH----------------HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHH
Confidence            43   1222222                25788888888888899999999999998533 454444432 345666666


Q ss_pred             hcC-CCChHHHHHHHHHHHHHHHhhHh
Q 009184          432 LLV-CPDPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       432 lL~-~~~~~~~~~~l~~L~~l~~~~~~  457 (541)
                      ..+ ..+|+++..+-.++..|.+.+..
T Consensus       302 ~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          302 NFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            554 47899999999999888776543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.14  E-value=9.5e-05  Score=82.45  Aligned_cols=258  Identities=10%  Similarity=0.094  Sum_probs=152.2

Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC------CCCHHHHHHHHHHHHHhhCCChhhHHHHH---hc-C
Q 009184          132 QLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY------SPSDDVREQAVWALGNIAGDSPRCRDLVL---SQ-G  201 (541)
Q Consensus       132 ~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~r~~i~---~~-g  201 (541)
                      ..+..|..+|..++....+   .++. .+++.+.+.+.      +++...++.|+.+++.++.....+.....   .. .
T Consensus       376 s~R~aa~~~L~~l~~~~~~---~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNEV---LVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCHH---HHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcch---hHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            4677778888888764332   1211 12344444454      46778999999999999843211100000   00 1


Q ss_pred             Ch----HHHHHhhcCC--ChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC-
Q 009184          202 GL----VPLLAQLNGQ--PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT-  274 (541)
Q Consensus       202 ~i----~~Ll~~l~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~-  274 (541)
                      ..    ..++..+...  .++-++..++|+++.++..-   .......+++.++..|.+++..|+..|+++|.+++... 
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL---TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            11    1223334222  27889999999999999864   23456788899999988888999999999999988631 


Q ss_pred             ----------hHHHHHHHHhCcHHHHHHhhCCCC-----hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh---
Q 009184          275 ----------NDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL---  336 (541)
Q Consensus       275 ----------~~~~~~~~~~g~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL---  336 (541)
                                .+.....+ ..+++.|..++....     ......++.+|+.++....+...... ..+++.|...+   
T Consensus       529 ~~~~~~~~~~~~~l~p~l-~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNST-EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTH-HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhH-HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHH
Confidence                      11111111 145666667775531     11334666666666542222111111 12333333333   


Q ss_pred             -cCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          337 -SGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       337 -~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                       +++.++..+..++.+++.++.. .++...            -+...++|.+..++.....+....+...+..++.
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~------------~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLP------------LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHH------------HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHH------------HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence             3443667777888899988875 444333            3344678888888887666777777777777654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.12  E-value=2.8e-05  Score=86.15  Aligned_cols=303  Identities=11%  Similarity=0.023  Sum_probs=169.0

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC--hhHHHHHHhCCCh
Q 009184           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT--SEHTKVVIDHGAV  161 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~g~i  161 (541)
                      +.++.+...++.++...++   .-++..+++.++++.+.++|..   ++++..|+.||..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            4678888999999999875   4567777788899999999874   799999999999998754  3333333321011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhhC------CCh-----hhHHHH--HhcCChHHHHHhhcCCChhhHHHHHHHHH
Q 009184          162 PIFVKLLY--SPSDDVREQAVWALGNIAG------DSP-----RCRDLV--LSQGGLVPLLAQLNGQPKLSMLRNATWTL  226 (541)
Q Consensus       162 ~~L~~lL~--~~~~~v~~~a~~~L~nl~~------~~~-----~~r~~i--~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L  226 (541)
                      ...+..+.  ..+.++.+..+..+..++.      ..+     +.+...  .-.+.++.++..+ ..++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            22222222  4667766655555443321      111     111110  1124677788888 556667777777666


Q ss_pred             HhhhcCC---CC--CCh----hhhhchHHHHHHhhccCC-----h-----------hHHHHHHHHHHHhc-cCChHHHHH
Q 009184          227 SNFCRGK---PQ--PPF----DQVSPALPALAHLIHSND-----D-----------EVLTDACWALSYLS-DGTNDKIQA  280 (541)
Q Consensus       227 ~~l~~~~---~~--~~~----~~~~~~l~~L~~lL~~~d-----~-----------~v~~~a~~~L~~l~-~~~~~~~~~  280 (541)
                      ..+....   +.  ...    .....+++.++.-+..++     .           +.|.... .+...+ .-.++..-.
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~  435 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSS  435 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHH
Confidence            6655321   11  111    223444555554444221     1           2333333 332222 112211111


Q ss_pred             -HHHhCcHHHHHHhhC---CCChhhHHHHHHHHhHhhcCCchhHHHH-----HhcCchHHHHHhhc-----CCCchhHHH
Q 009184          281 -VIEAGVFPRLAEFLM---HPSPSVLIPALRTVGNIVTGDDMQTQCV-----IEYQALPCLLNLLS-----GNYKKSIKK  346 (541)
Q Consensus       281 -~~~~g~l~~L~~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~~-----~~~~~l~~L~~lL~-----~~~~~~v~~  346 (541)
                       +.+ -+.+.+...+.   +.+|..++.++.+|+.++.+.......+     .-..+++.+..++.     .. ++.|+.
T Consensus       436 ~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~  513 (980)
T 3ibv_A          436 YMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQL  513 (980)
T ss_dssp             HHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHH
T ss_pred             HHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHH
Confidence             110 11122223332   3468899999999999988754321111     00124556666655     45 899999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh------hcCchhHHHHHHHHHHHhccCCC
Q 009184          347 EACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALL------ENAEFDIKKEAAWAISNATSGGT  413 (541)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l------~~~~~~v~~~a~~aL~nl~~~~~  413 (541)
                      .++|+++..+.--..+                 ...++.++..+      .+++.+++..|+.++.+++..+.
T Consensus       514 ~~~~~l~rys~~~~~~-----------------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          514 LYMEILVRYASFFDYE-----------------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHHTGGGGGTC-----------------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcC-----------------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            9999999987621111                 12344444443      34567899999999999987543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.08  E-value=0.0021  Score=71.73  Aligned_cols=348  Identities=13%  Similarity=0.079  Sum_probs=183.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCc----HHHHHh--cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184           75 LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPP----IEEVIR--SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (541)
Q Consensus        75 l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~i~--~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~  148 (541)
                      ++.+++.+  .+++.+..|+.++..+++....+.    ...++.  .+..+.+...+...+ .+.....+..+..++...
T Consensus       243 l~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~~  319 (963)
T 2x19_B          243 IQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGENH  319 (963)
T ss_dssp             HHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHh
Confidence            34444444  357788899999999987532221    111111  112233333334444 555556666666665421


Q ss_pred             hhHH-------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------hhhHHHHHh--cCChHHH
Q 009184          149 SEHT-------KVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDS--------PRCRDLVLS--QGGLVPL  206 (541)
Q Consensus       149 ~~~~-------~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~--------~~~r~~i~~--~g~i~~L  206 (541)
                      +...       ..+  ..+++.++.+...     .++.+...++..+..++.+.        +........  ...++.+
T Consensus       320 ~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l  397 (963)
T 2x19_B          320 SRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL  397 (963)
T ss_dssp             HHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            1110       111  1345555655553     34556666766666665411        111111110  0123444


Q ss_pred             HHhhcCCChh--------------hHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHHHH
Q 009184          207 LAQLNGQPKL--------------SMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----HSNDDEVLTDACWALS  268 (541)
Q Consensus       207 l~~l~~~~~~--------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----~~~d~~v~~~a~~~L~  268 (541)
                      +..+....+.              +.+..+..+|..++...+   ......+++.+...+    .+.+...++.++++++
T Consensus       398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~  474 (963)
T 2x19_B          398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQ  474 (963)
T ss_dssp             HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            4444322211              123444555555553211   112233444444555    4567788999999999


Q ss_pred             HhccCChHHHHHHHHhCcHHHHHHhh---CCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHH
Q 009184          269 YLSDGTNDKIQAVIEAGVFPRLAEFL---MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK  345 (541)
Q Consensus       269 ~l~~~~~~~~~~~~~~g~l~~L~~lL---~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~  345 (541)
                      .++.+.....     ...++.++..+   ..+++.++..+++++|.++..-.... ..+ ..+++.|+..|.+   +.++
T Consensus       475 ~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~V~  544 (963)
T 2x19_B          475 SIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PELS  544 (963)
T ss_dssp             HHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GGGH
T ss_pred             HHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---chHH
Confidence            9987643211     12333444333   33578899999999999986432222 222 3788888888843   7899


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC--chhHHHHHHHHHHHhccCCC-HHHHHHHHH
Q 009184          346 KEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGT-HEQIKFLVI  422 (541)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~  422 (541)
                      ..|++++.+++........           ..+ ..++..|..++..+  +.+.+..+..+++.++.... .....++ +
T Consensus       545 ~~A~~al~~l~~~~~~~l~-----------p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~-~  611 (963)
T 2x19_B          545 VSSVSTLKKICRECKYDLP-----------PYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNL-H  611 (963)
T ss_dssp             HHHHHHHHHHHHHTGGGCT-----------TTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHH-----------hhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHH-H
Confidence            9999999999974333222           111 13555666666653  56889999999999986544 2333332 1


Q ss_pred             cCChHHHhhhc----CC-CChHHHH---HHHHHHHHHHHh
Q 009184          423 QGCIKPLCDLL----VC-PDPRIVT---VCLEGLENILKV  454 (541)
Q Consensus       423 ~~~i~~L~~lL----~~-~~~~~~~---~~l~~L~~l~~~  454 (541)
                       .++.++...+    +. .+++...   ..+++|..+.+.
T Consensus       612 -~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~  650 (963)
T 2x19_B          612 -SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT  650 (963)
T ss_dssp             -HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             2344444333    22 2444433   445555555543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.99  E-value=0.00029  Score=65.92  Aligned_cols=187  Identities=12%  Similarity=0.110  Sum_probs=141.2

Q ss_pred             HHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhh
Q 009184          290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV  369 (541)
Q Consensus       290 L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~  369 (541)
                      ++..|.+.+...+..++.-|..+.......+..++..+++..|+.+.... +.+++..++.++.++... .....     
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~-----  195 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGML-----  195 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHH-----
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-ccccc-----
Confidence            44455566777889999999997766778888999999999999999998 999999999999999874 44454     


Q ss_pred             chhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHH--------Hc--CChHHHhhhcC---C
Q 009184          370 HAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLV--------IQ--GCIKPLCDLLV---C  435 (541)
Q Consensus       370 ~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--------~~--~~i~~L~~lL~---~  435 (541)
                            .++ ...++..+..++.+.+..|.+.|+..|..++...+... ..+.        +.  .....|+.+|.   +
T Consensus       196 ------gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~-~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~  268 (339)
T 3dad_A          196 ------GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA-PLFIRAVNSVASTTGAPPWANLVSILEEKNG  268 (339)
T ss_dssp             ------HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS
T ss_pred             ------chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccc-hHHHHHHHHhhhccCCCcHHHHHHHHhccCC
Confidence                  444 55678888888888889999999999999987642111 1111        11  24778999997   6


Q ss_pred             CChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCC--CHHHHH
Q 009184          436 PDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD--NAEIYE  495 (541)
Q Consensus       436 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~--~~~i~~  495 (541)
                      .|.++...++..|..++...+....     -..+...+++.|.-..+.......  ++++.+
T Consensus       269 ~D~elq~~amtLIN~lL~~apd~d~-----~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          269 ADPELLVYTVTLINKTLAALPDQDS-----FYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSHHH-----HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCChhH-----HHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            8899999999999999887653321     223677888888777888865544  666654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.89  E-value=0.0064  Score=68.35  Aligned_cols=357  Identities=10%  Similarity=0.111  Sum_probs=188.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHcc---CCCC--c------H-HHHHh--cCCHHHHHHhhcCCCcHHHHHHHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSI---ERSP--P------I-EEVIR--SGVVPRFVEFLLREDYPQLQFEAAW  139 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~---~~~~--~------~-~~~i~--~g~i~~Lv~lL~~~~~~~i~~~a~~  139 (541)
                      .++.+++.++ .++..+..++..|..+...   .+..  .      + +.+..  ..+++.+.+++....++.++..++.
T Consensus       139 ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~  217 (1049)
T 3m1i_C          139 FIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLE  217 (1049)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            5677777775 4554555555555554421   0010  0      0 11221  1234445556655444789999999


Q ss_pred             HHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--hh---hHHHHHh--cCChHHHHH-h-
Q 009184          140 ALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDS--PR---CRDLVLS--QGGLVPLLA-Q-  209 (541)
Q Consensus       140 ~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~--~~---~r~~i~~--~g~i~~Ll~-~-  209 (541)
                      ++.++..--+  ...+.+...++.+.. ++  .+++++..|+.+|..+....  +.   ....+..  .+.+..+.. + 
T Consensus       218 ~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~  293 (1049)
T 3m1i_C          218 SLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM  293 (1049)
T ss_dssp             HHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhC
Confidence            9988766333  223455667777763 44  37899999999999998542  21   1111111  111221111 1 


Q ss_pred             ---------h--cCCChhhHHHHHHHHHHhhhcCC------CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184          210 ---------L--NGQPKLSMLRNATWTLSNFCRGK------PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       210 ---------l--~~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  272 (541)
                               +  ....+.+.....+..+..+....      +.........+++.++.....++.++...++..+..++.
T Consensus       294 p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~  373 (1049)
T 3m1i_C          294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA  373 (1049)
T ss_dssp             CTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                     1  12234555555555554443210      111112234567777777777788888888766666654


Q ss_pred             ----CC--hHHHHHHHHhCcHHHHHHhhCCCCh----------------------hhHHHHHHHHhHhhcCCchhHHHHH
Q 009184          273 ----GT--NDKIQAVIEAGVFPRLAEFLMHPSP----------------------SVLIPALRTVGNIVTGDDMQTQCVI  324 (541)
Q Consensus       273 ----~~--~~~~~~~~~~g~l~~L~~lL~~~~~----------------------~v~~~al~~L~nl~~~~~~~~~~~~  324 (541)
                          ..  ......++. .+++.++..+..++.                      ..+..+..+|..++.......   +
T Consensus       374 ~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~---l  449 (1049)
T 3m1i_C          374 DLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT---E  449 (1049)
T ss_dssp             HHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHH---H
T ss_pred             HHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHH---H
Confidence                11  111111111 344555555532210                      123344445555543222111   1


Q ss_pred             hcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh-----cCchhHH
Q 009184          325 EYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLE-----NAEFDIK  398 (541)
Q Consensus       325 ~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~-----~~~~~v~  398 (541)
                       .-+.+.+-..+.. ..+...+..++|+++.++.+......           .-.-..+++.|..+..     .+++.++
T Consensus       450 -~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e-----------~~~l~~v~~~l~~l~~~~~~~~~~~~v~  517 (1049)
T 3m1i_C          450 -EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTE-----------KRFVVTVIKDLLDLTVKKRGKDNKAVVA  517 (1049)
T ss_dssp             -HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHH-----------HHHHHHHHHHHHHHTTSSCSHHHHHHHH
T ss_pred             -HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhh-----------HHHHHHHHHHHHHHHhhhccccchHHHH
Confidence             1123444455543 22667889999999999864322211           1111124444544332     1345566


Q ss_pred             HHHHHHHHHhccC--CCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhH
Q 009184          399 KEAAWAISNATSG--GTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE  456 (541)
Q Consensus       399 ~~a~~aL~nl~~~--~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~  456 (541)
                      ..++|+++.++..  ..++...     .+++.|...+.++++.++..|+.++.++.....
T Consensus       518 ~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          518 SDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             HHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            6799999987643  1222222     357778888888889999999999999998644

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.85  E-value=0.00077  Score=74.79  Aligned_cols=141  Identities=10%  Similarity=0.052  Sum_probs=88.2

Q ss_pred             cHHHHHHHHHHHHHHhcCChhH-HHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCCh
Q 009184          130 YPQLQFEAAWALTNIASGTSEH-TKVVIDHGAVPIFVKLLYS-----PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGL  203 (541)
Q Consensus       130 ~~~i~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i  203 (541)
                      ++..++.++|+++.|+.+-.+. -..++ ..+++.|+.++..     +...++..++|++|.++..-....+. +. ..+
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L~-~vl  542 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-LR-TVI  542 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-HH-HHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-HH-HHH
Confidence            4999999999999999865433 22222 2467888887753     33456678889999887422111111 11 134


Q ss_pred             HHHHHhhcCCChhhHHHHHHHHHHhhhcCCCC--------CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          204 VPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ--------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       204 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~--------~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      ..++..+ ..+++.++..|+|++.++|.....        ........++..+...+..-+.+-...+..+++.+....
T Consensus       543 ~~L~~~l-~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~  620 (1023)
T 4hat_C          543 LKLFEFM-HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1023)
T ss_dssp             HHHHHHT-TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHh-hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence            4455555 556688999999999999975211        111123444444555554456677778888888887653

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.72  E-value=0.0074  Score=66.90  Aligned_cols=297  Identities=12%  Similarity=0.107  Sum_probs=162.7

Q ss_pred             CCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHH-HhhcCCCcHHHHHHHHHHHHHHhcCC-hhHHHHHHh--CC
Q 009184           84 SNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV-EFLLREDYPQLQFEAAWALTNIASGT-SEHTKVVID--HG  159 (541)
Q Consensus        84 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv-~lL~~~~~~~i~~~a~~~L~~l~~~~-~~~~~~i~~--~g  159 (541)
                      +.++.+...++.++..+++   --++..+++.++++.++ .+|.  + ++++..|+.||..|.... ++....+..  .+
T Consensus       218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            4567777888889888875   44677888899999884 6664  3 899999999999998743 222222211  11


Q ss_pred             ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCC-------ChhhHHHHHhcCChHHHHHhhcCCChhhHH
Q 009184          160 AVPIFVKLL-------------YSPSDDVREQAVWALGNIAGD-------SPRCRDLVLSQGGLVPLLAQLNGQPKLSML  219 (541)
Q Consensus       160 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~nl~~~-------~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~  219 (541)
                      .+..+..++             ...+.+.....+..+..+...       .|..+..+..  ++..++.+- ..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence            122222222             122345555555555554321       1111111111  122333333 55688888


Q ss_pred             HHHHHHHHhhhcC----CC-----CC------------ChhhhhchHHHHHH----hhccCCh-----------------
Q 009184          220 RNATWTLSNFCRG----KP-----QP------------PFDQVSPALPALAH----LIHSNDD-----------------  257 (541)
Q Consensus       220 ~~a~~~L~~l~~~----~~-----~~------------~~~~~~~~l~~L~~----lL~~~d~-----------------  257 (541)
                      ..+......|...    .+     .+            ......+++..|..    -+..+++                 
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            8887776665432    11     00            01112333333333    2222210                 


Q ss_pred             --------hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCCchhHHHHHhcC
Q 009184          258 --------EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ  327 (541)
Q Consensus       258 --------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~  327 (541)
                              +...+++..+.++.  ..+...     -.++.+.+.+..  .+|.....+|+++|.++..-....+.-.=..
T Consensus       449 d~~~~~ly~~mrd~L~~lt~l~--~~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~  521 (1073)
T 3gjx_A          449 DTDSINLYKNMRETLVYLTHLD--YVDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT  521 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHC--HHHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHhcCC--HHHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence                    12222332222222  111111     123444444443  4688999999999999854433222122235


Q ss_pred             chHHHHHhhcCCC----chhHHHHHHHHHHHHhc---CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHH
Q 009184          328 ALPCLLNLLSGNY----KKSIKKEACWTVSNITA---GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKE  400 (541)
Q Consensus       328 ~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~  400 (541)
                      +++.|+.+..+..    ...++...+|++|..+.   ..++...                .++..|++.+...++.|+..
T Consensus       522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~----------------~vl~~L~~~m~~~~~~vq~a  585 (1073)
T 3gjx_A          522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK----------------TVVNKLFEFMHETHDGVQDM  585 (1073)
T ss_dssp             HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH----------------HHHHHHHHHTTCCSTTHHHH
T ss_pred             HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH----------------HHHHHHHHHHhcCCHHHHHH
Confidence            6777777775442    23455667799998765   2333333                46677888888888999999


Q ss_pred             HHHHHHHhccCC
Q 009184          401 AAWAISNATSGG  412 (541)
Q Consensus       401 a~~aL~nl~~~~  412 (541)
                      |+.++..++..+
T Consensus       586 A~~af~~i~~~C  597 (1073)
T 3gjx_A          586 ACDTFIKIAQKC  597 (1073)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH
Confidence            999999998654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.54  E-value=0.0068  Score=67.12  Aligned_cols=340  Identities=12%  Similarity=0.063  Sum_probs=180.2

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHH-hCC----ChHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCChhhHHHHHhc
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVI-DHG----AVPIFVKLLY-----SPSDDVREQAVWALGNIAGDSPRCRDLVLSQ  200 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~-~~g----~i~~L~~lL~-----~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~  200 (541)
                      +...+.|+.+|+.++.+-......+. ...    +++.+..++.     .+++.++..++|+++..+..-..      ..
T Consensus       457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~~  530 (980)
T 3ibv_A          457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ES  530 (980)
T ss_dssp             HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------CC
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------Cc
Confidence            78899999999999886433211110 012    2344445544     57899999999999998754321      22


Q ss_pred             CChHHHHHhhcC-----CChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc-----CCh-------------
Q 009184          201 GGLVPLLAQLNG-----QPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-----NDD-------------  257 (541)
Q Consensus       201 g~i~~Ll~~l~~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-----~d~-------------  257 (541)
                      ..+++++..+..     +++..++..|+.++.++|+.....-......++..+..+|..     .+.             
T Consensus       531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~  610 (980)
T 3ibv_A          531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN  610 (980)
T ss_dssp             TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred             hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence            356666666544     456789999999999999875332223334455555555542     111             


Q ss_pred             ---hHHHHHHHHHHHhc---cCChHHHHHHHHhCcHHH----HHHhhCCC----Chh-hHHHHHHHHhHhhcCCchh---
Q 009184          258 ---EVLTDACWALSYLS---DGTNDKIQAVIEAGVFPR----LAEFLMHP----SPS-VLIPALRTVGNIVTGDDMQ---  319 (541)
Q Consensus       258 ---~v~~~a~~~L~~l~---~~~~~~~~~~~~~g~l~~----L~~lL~~~----~~~-v~~~al~~L~nl~~~~~~~---  319 (541)
                         +-+.....+++.+.   ..+.+.....++ .+++.    +-..+...    +.. -....+.+++.++.+-...   
T Consensus       611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~  689 (980)
T 3ibv_A          611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSE  689 (980)
T ss_dssp             TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-C
T ss_pred             CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCC
Confidence               12333445555554   223333332332 23333    33344322    111 2234577778888654321   


Q ss_pred             ---HHHHHhcCchHHHHHhhc--CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-
Q 009184          320 ---TQCVIEYQALPCLLNLLS--GNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-  393 (541)
Q Consensus       320 ---~~~~~~~~~l~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-  393 (541)
                         ...++ ..+.+.++..|.  .. +..++..++.++..+...-...+.                ..+|.++..+-.. 
T Consensus       690 ~~p~~~~f-~~~~~~il~~l~~~~~-~~~irea~~~~~~r~i~~lg~~~~----------------p~lp~~i~~ll~~~  751 (980)
T 3ibv_A          690 EVAWLASF-NKASDEIFLILDRMGF-NEDIRGAVRFTSGRIINVVGPDML----------------PKVPQLISILLNSI  751 (980)
T ss_dssp             CCSHHHHH-HHHHHHHHHHHHHSCC-SHHHHHHHHHHHHHHTTTTHHHHT----------------TTHHHHHHHHHHHC
T ss_pred             CCcHHHHH-HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHhHH----------------HHHHHHHHHHHhcC
Confidence               11111 234555655565  34 788999999999999885444443                4677777765432 


Q ss_pred             chhHHHHHHHHHHHhccCCCHHHHHHHHH--cCChHHHhhhcCCCC---------hHHHHHHHHHHHHHHHhhHhhhhcC
Q 009184          394 EFDIKKEAAWAISNATSGGTHEQIKFLVI--QGCIKPLCDLLVCPD---------PRIVTVCLEGLENILKVGEAEKNLG  462 (541)
Q Consensus       394 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~--~~~i~~L~~lL~~~~---------~~~~~~~l~~L~~l~~~~~~~~~~~  462 (541)
                      +..--...+|.++.++..-..+....|-+  .-++..+..+|..++         ..+.+.-+..+..++..+-.     
T Consensus       752 ~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~-----  826 (980)
T 3ibv_A          752 DMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFG-----  826 (980)
T ss_dssp             CTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCT-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCch-----
Confidence            44445566777777764221122222111  124455555665432         12444444455555542211     


Q ss_pred             CCCcchhhhHhhhc--c----hHHHHHHH-hcCCCHHHHHHHHHHHHHhCCC
Q 009184          463 NTDVNVFTQMIDDA--E----GLEKIESL-QTHDNAEIYEKSVKLLETYWLD  507 (541)
Q Consensus       463 ~~~~~~~~~~i~~~--~----~~~~l~~L-~~~~~~~i~~~a~~il~~~~~~  507 (541)
                             ..++.+.  +    .+..|... ...+++...+.|..++.++...
T Consensus       827 -------~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~  871 (980)
T 3ibv_A          827 -------SILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL  871 (980)
T ss_dssp             -------GGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred             -------hhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence                   0111111  1    13333333 2457888889999998887654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.52  E-value=0.002  Score=60.35  Aligned_cols=192  Identities=11%  Similarity=0.092  Sum_probs=125.6

Q ss_pred             cCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcH-HHHH--hcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCC
Q 009184           72 LENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPI-EEVI--RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGT  148 (541)
Q Consensus        72 ~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~i--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~  148 (541)
                      +..+| +-+.|.|.++..|..|+..+.+++........ +...  -....+.+-..+.+.+ ..++..++.++..++...
T Consensus         9 ~sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~   86 (278)
T 4ffb_C            9 YTTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAF   86 (278)
T ss_dssp             --CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC
T ss_pred             hhcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHh
Confidence            44566 66889999999999999999998865321111 1111  1234566677887777 999999999999887532


Q ss_pred             h-----hHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q 009184          149 S-----EHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (541)
Q Consensus       149 ~-----~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a  222 (541)
                      .     .......-..++|.|+. .+.+....+++.+..++..++...... ..     +++.++..+ .+.++.++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~  159 (278)
T 4ffb_C           87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAA  159 (278)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHH
T ss_pred             hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHH
Confidence            1     11111112345777775 578888999999988887776332211 11     234455555 67889998888


Q ss_pred             HHHHHhhhcCC--CCCC-hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184          223 TWTLSNFCRGK--PQPP-FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       223 ~~~L~~l~~~~--~~~~-~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  272 (541)
                      +..|..+....  .... ......+++.+..++.+.|+.|+..|..++..+-.
T Consensus       160 l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          160 ANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            88888776542  1111 22334566778888999999999999998877653

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.45  E-value=0.034  Score=51.66  Aligned_cols=299  Identities=18%  Similarity=0.182  Sum_probs=180.8

Q ss_pred             HHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHH
Q 009184          183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH-SNDDEVLT  261 (541)
Q Consensus       183 L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~-~~d~~v~~  261 (541)
                      |.|+..++...-+-++..+++..+...+ ..++.++.+..+..|...+.... .........+|.++..+. ++++++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaks-L~~t~L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKA-LAKTPLENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGG-GGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHH-HhhccccccchHHHHHhccCCCcceEE
Confidence            3344445544556666777788888887 77888999999999988876542 122234678898888876 67899999


Q ss_pred             HHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC-CC------Chh-------hHHHHHHHHhHhhc-------------
Q 009184          262 DACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM-HP------SPS-------VLIPALRTVGNIVT-------------  314 (541)
Q Consensus       262 ~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~------~~~-------v~~~al~~L~nl~~-------------  314 (541)
                      .....|++...+.....+..+..|.+..|...+. .+      +..       +...+++++.|+..             
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            9999999999888877777788899999988762 22      222       34445555555532             


Q ss_pred             CC--chhHHHHHhcCchHHHHHhhcCCC-----chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          315 GD--DMQTQCVIEYQALPCLLNLLSGNY-----KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       315 ~~--~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      |.  ..+...+++..++..|+..|+-..     --++|.......--+.+...--.+.++-.   .. .+-..+.+-.++
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~V---tD-d~rk~NLvGHIc  499 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNV---ID-ENRKENLIGHIC  499 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGC---CC-TTTCCCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccc---cc-hhhhhhhHHHHH
Confidence            11  123344567788888998887542     13566666555554444211100000000   00 111234444444


Q ss_pred             HHhhc-----Cc-------hhHHHHHHHHHHHhccCC-CHHHHHHHHHcC--ChHHHhhhcCCC--ChHHHHHHHHHHHH
Q 009184          388 ALLEN-----AE-------FDIKKEAAWAISNATSGG-THEQIKFLVIQG--CIKPLCDLLVCP--DPRIVTVCLEGLEN  450 (541)
Q Consensus       388 ~~l~~-----~~-------~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~--~i~~L~~lL~~~--~~~~~~~~l~~L~~  450 (541)
                      -.+..     .+       ..+.+.+...|..+.... ...+    +..+  .+..=..+|+++  .|..+..++..-.+
T Consensus       500 iA~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~q----VAh~~YsIsCPLnlLn~nQ~KP~FI~NVL~VcDK  575 (619)
T 3c2g_A          500 AAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKE----VAQYSYSIDCPLNLLNGNQVKPTFIHNVLVVCDK  575 (619)
T ss_dssp             HHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHH----HHHTTTTSCCGGGGGSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHH----HHhheeeccCchhhhcccccChHHHHHHHHHHHH
Confidence            44432     11       223344555555555432 3322    1222  244445667664  46777788888888


Q ss_pred             HHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184          451 ILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  504 (541)
Q Consensus       451 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~  504 (541)
                      +++.++.....       +      .-.-..++.+.+|.|++|...|..++.+|
T Consensus       576 ILeHcP~~Ad~-------W------~i~r~tle~l~NHsNsDIa~aasSLL~rf  616 (619)
T 3c2g_A          576 ILEHCPTRADI-------W------TIDRPMLEGLTNHRNSDIAKAANSLLSRF  616 (619)
T ss_dssp             HHHHCTTHHHH-------S------CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred             HHHhCcchhcc-------c------eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            88776553211       0      11134678899999999999999999776

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.43  E-value=0.00034  Score=69.24  Aligned_cols=220  Identities=17%  Similarity=0.110  Sum_probs=143.4

Q ss_pred             hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHH-HHHhcCCHHHHHHhhc---------CCCcHHHHHHHHHH
Q 009184           71 KLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE-EVIRSGVVPRFVEFLL---------REDYPQLQFEAAWA  140 (541)
Q Consensus        71 ~~~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~-~~i~~g~i~~Lv~lL~---------~~~~~~i~~~a~~~  140 (541)
                      .++....++..|.++.+++|.-|+-.||.++......... ...+..+.-.|+-.+.         +.--..+|+.|+.+
T Consensus       172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQt  251 (800)
T 3oc3_A          172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYL  251 (800)
T ss_dssp             GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHH
Confidence            3446788888999999999999999999998754210000 0001123333333332         11125799999999


Q ss_pred             HHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q 009184          141 LTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLR  220 (541)
Q Consensus       141 L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~  220 (541)
                      |+.+ ..-+..      ..++..++..+..+..+++..++..|..+    .+.... + .++++.++..| .+.+.+++.
T Consensus       252 LGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-L-d~Vv~aVL~GL-~D~DDDVRA  317 (800)
T 3oc3_A          252 LSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-K-DGLCRKLVSLL-SSPDEDIKL  317 (800)
T ss_dssp             HHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-H-HHHHHHHHHHT-TCSSHHHHH
T ss_pred             HHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-H-HHHHHHHHhhc-CCcccHHHH
Confidence            9999 543333      34455565666778899999999999887    111111 1 23577777888 777899999


Q ss_pred             HHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCCh--hHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC
Q 009184          221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS  298 (541)
Q Consensus       221 ~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~  298 (541)
                      .|+.+|..++  .    ......++..+...|.+-|+  .-....+..|+.|+..+..   ...+...+|+|.+++.++-
T Consensus       318 VAAetLiPIA--~----p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtI  388 (800)
T 3oc3_A          318 LSAELLCHFP--I----TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPV  388 (800)
T ss_dssp             HHHHHHTTSC--C----SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSS
T ss_pred             HHHHHhhhhc--c----hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCc
Confidence            9999999988  1    13345666677776664321  1223333444444433221   0112378999999999999


Q ss_pred             hhhHHHHHHHHhHhh
Q 009184          299 PSVLIPALRTVGNIV  313 (541)
Q Consensus       299 ~~v~~~al~~L~nl~  313 (541)
                      .+||..+++++..+.
T Consensus       389 TSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          389 PEVRTSILNMVKNLS  403 (800)
T ss_dssp             HHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998887

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.30  E-value=0.053  Score=60.14  Aligned_cols=315  Identities=13%  Similarity=0.137  Sum_probs=166.2

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHH
Q 009184          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIF-VKLLYSPSDDVREQAVWALGNIAGDS-PRCRD  195 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~  195 (541)
                      ++.+..+|..+.++++...++.+|..+.+=-  ....+++.+.++.| ..+|  ++++++..|+.||..+.+.. +.+.+
T Consensus       208 l~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~  283 (1073)
T 3gjx_A          208 FQLCQFVMENSQNAPLVHATLETLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEE  283 (1073)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHH
Confidence            3344445544444888888889999887732  24567788888888 4666  46789999999999998542 22223


Q ss_pred             HHHh--cCChHHHHHhh------------cCCChhhHHHHHHHHHHhhhcCCC-----CCC-hhhhhchHHHHHHhhccC
Q 009184          196 LVLS--QGGLVPLLAQL------------NGQPKLSMLRNATWTLSNFCRGKP-----QPP-FDQVSPALPALAHLIHSN  255 (541)
Q Consensus       196 ~i~~--~g~i~~Ll~~l------------~~~~~~~~~~~a~~~L~~l~~~~~-----~~~-~~~~~~~l~~L~~lL~~~  255 (541)
                      .+..  .+.+..+-.++            ....+.+.....+.++..+.....     .+. ......++..++.+...+
T Consensus       284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~  363 (1073)
T 3gjx_A          284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE  363 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC
Confidence            2211  01111111122            123345666777777766554320     001 112233444556666677


Q ss_pred             ChhHHHHHHHHHHHhcc----CC------------------hHHHHHHH--HhCcHHHHHHhhCCCCh------------
Q 009184          256 DDEVLTDACWALSYLSD----GT------------------NDKIQAVI--EAGVFPRLAEFLMHPSP------------  299 (541)
Q Consensus       256 d~~v~~~a~~~L~~l~~----~~------------------~~~~~~~~--~~g~l~~L~~lL~~~~~------------  299 (541)
                      |.++...++..-..+..    ..                  ........  =..+...++.-|..+..            
T Consensus       364 d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~  443 (1073)
T 3gjx_A          364 ETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVV  443 (1073)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHH
Confidence            88877665544333321    10                  01111000  01222333333332221            


Q ss_pred             -----h-----hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCC-CchhHHHHHHHHHHHHhcC-ChHHHHHHH
Q 009184          300 -----S-----VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGN-YKKSIKKEACWTVSNITAG-NREQIQVIM  367 (541)
Q Consensus       300 -----~-----v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~~~  367 (541)
                           +     +....-.++..++.-....+..+    .++.|...+..+ .+......+||+++.++.. .++.-..  
T Consensus       444 re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~--  517 (1073)
T 3gjx_A          444 REFMKDTDSINLYKNMRETLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKR--  517 (1073)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHH--
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccc--
Confidence                 0     00111112222221111111111    233444444432 2567889999999999863 2221110  


Q ss_pred             hhchhhHHHHHhcCcHHHHHHHhhcC-----chhHHHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHhhhcCCCChHH
Q 009184          368 HVHAFSIIAVIEANIIGPLVALLENA-----EFDIKKEAAWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRI  440 (541)
Q Consensus       368 ~~~~~~~~~l~~~~~l~~L~~~l~~~-----~~~v~~~a~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~  440 (541)
                              .+.  .+++.|+.+....     ...++...+|+++.....-  .++..+     .++..|.+.+...++.+
T Consensus       518 --------~Lp--~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~v  582 (1073)
T 3gjx_A          518 --------FLV--TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGV  582 (1073)
T ss_dssp             --------HHH--HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTH
T ss_pred             --------hHH--HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHH
Confidence                    122  3677777776554     2345666778888876531  233322     35777888888889999


Q ss_pred             HHHHHHHHHHHHHhhHh
Q 009184          441 VTVCLEGLENILKVGEA  457 (541)
Q Consensus       441 ~~~~l~~L~~l~~~~~~  457 (541)
                      +..|+.++..|...+..
T Consensus       583 q~aA~~af~~i~~~C~~  599 (1073)
T 3gjx_A          583 QDMACDTFIKIAQKCRR  599 (1073)
T ss_dssp             HHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999876654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.19  E-value=0.019  Score=53.66  Aligned_cols=201  Identities=15%  Similarity=0.142  Sum_probs=141.8

Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR----CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l  229 (541)
                      .+...+.+..|+..|..-+.+.+..+..++.++.+....    ..+.+..  -...+.-++....++++.-.+-..|...
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec  150 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC  150 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence            344457788899999888899999999999999865542    2233332  1233333333445666666666667666


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCChhhHHHHH
Q 009184          230 CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPAL  306 (541)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al  306 (541)
                      ++...........+.+-.+...+..++=++..+|..++..+..........++..   .++...-.+|.+++.-++..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            6654333333334555566777788889999999999988876555444444443   4577788899999999999999


Q ss_pred             HHHhHhhcCCch---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          307 RTVGNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       307 ~~L~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      ..||.+......   ....+-+..-+..++.+|.+. +..++.+|..++--+++
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999999875332   223334556788999999999 99999999999887777

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.19  E-value=0.0052  Score=56.22  Aligned_cols=180  Identities=15%  Similarity=0.092  Sum_probs=118.9

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc----hhHHH
Q 009184          247 ALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD----MQTQC  322 (541)
Q Consensus       247 ~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~----~~~~~  322 (541)
                      .+...|.+.|..-...++..|........+.....++ .+++.+.-.+.+.+..+...++.+|..+...-.    .....
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            3455566667776677777666654333322221122 133444334457788888888888877753111    11111


Q ss_pred             HHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHH
Q 009184          323 VIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAA  402 (541)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~  402 (541)
                      - -.-++|.|+.-+-++ ...+|..+-.++..++.-.+..                  .+++.+++.+.+.++++|.+++
T Consensus       129 e-a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~------------------~v~~~l~~g~ksKN~R~R~e~l  188 (266)
T 2of3_A          129 E-VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL------------------KMTPMLLDALKSKNARQRSECL  188 (266)
T ss_dssp             H-HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH------------------HHHHHHHHGGGCSCHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH------------------HHHHHHHHHHccCCHHHHHHHH
Confidence            1 124688999999887 8889988887777665421111                  2567788888889999999999


Q ss_pred             HHHHHhccC-CCHHHHHHHHHcCCh---HHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          403 WAISNATSG-GTHEQIKFLVIQGCI---KPLCDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       403 ~aL~nl~~~-~~~~~~~~l~~~~~i---~~L~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      ..+..+... |.+       ....+   +.+..++.+.|..++..|+.++..+...
T Consensus       189 ~~l~~li~~~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          189 LVIEYYITNAGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             HHHHHHHHHHCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            999998742 221       13468   9999999999999999999999887764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.13  E-value=0.0079  Score=56.20  Aligned_cols=186  Identities=14%  Similarity=0.100  Sum_probs=125.1

Q ss_pred             HHHhhcCCChhhHHHHHHHHHHhhhcCCCCCC-----hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh-----
Q 009184          206 LLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP-----FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-----  275 (541)
Q Consensus       206 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-----  275 (541)
                      +-..| .+.+...+..++..+..+....+...     ........+.+.+.+.+.+..+...++.++..++....     
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            55666 78889999999998888776542211     11234556777788888899999999999988764321     


Q ss_pred             HHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          276 DKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       276 ~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                      .......-..+++.|+. .+.+....++..++.++..++.......      .+++.+...+.+. ++.++.+++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence            11111122356777775 4788888999999988877765332111      1245677778888 99999999999988


Q ss_pred             Hhc--CChH-HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccC
Q 009184          355 ITA--GNRE-QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSG  411 (541)
Q Consensus       355 l~~--~~~~-~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~  411 (541)
                      +..  +... ...           ..+. .+++.+..++.+.++.||..|..++..+-..
T Consensus       166 ~l~~fg~~~~~~k-----------~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVNVQ-----------TFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCCHH-----------HHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCCch-----------hHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            875  2111 011           1111 3556777788999999999999999888653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.08  E-value=0.0039  Score=61.93  Aligned_cols=244  Identities=13%  Similarity=0.066  Sum_probs=154.8

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC--CChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GAVPIFVKLL--YS--------PSDDVREQAVWALG  184 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL--~~--------~~~~v~~~a~~~L~  184 (541)
                      +...|+.-|-++. +++|.-|+.+|..+..............  .+.-.|+.++  +.        --..|||.|+.+|+
T Consensus       175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            5667777777777 9999999999999876322110000111  1122222222  11        12579999999999


Q ss_pred             HhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 009184          185 NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDAC  264 (541)
Q Consensus       185 nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~  264 (541)
                      .+ ..-+.-      ..++..++..+ .....+++..++-.|..+ .+-- .   ...++++.++..|.+.|++|+..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL-~---~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFV-E---DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGC-C---CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHH-H---HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            98 555432      23444455444 566788999999999988 2111 1   1577888999999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-CC-hhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCch
Q 009184          265 WALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-PS-PSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK  342 (541)
Q Consensus       265 ~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~-~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  342 (541)
                      .+|..++ . ++...     .++..+...|.+ ++ .......+..|+.+++.+...   ..+...+|.|.+.+.++ -.
T Consensus       321 etLiPIA-~-p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP-I-TDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC-C-SSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc-c-hhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999988 2 22222     345556666543 22 233455566777776655321   12347899999999999 99


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184          343 SIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS  406 (541)
Q Consensus       343 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~  406 (541)
                      .||..++.+|..+.  ......           .+        .-.+|-.++.+++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LR-----------LI--------FQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDF-----------LV--------AEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHH-----------HH--------HHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHH-----------HH--------HHHHHhCCcHHHHHHHHHHHH
Confidence            99999999998776  233222           11        122344566777777766663

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.00  E-value=0.026  Score=51.58  Aligned_cols=178  Identities=15%  Similarity=0.092  Sum_probs=117.3

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhh----cCCC
Q 009184          162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFC----RGKP  234 (541)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~----~~~~  234 (541)
                      +.+...|.+.+..-+..++..|.......+   +.+..  .+..+++.+.   .+++..+...++.+|..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            344555555566666666666665543322   12211  2333333221   3567778777777776653    3222


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                      .........++|.|+.-+..+.+.++..+-.++..+....+       -..+++.++.-+.+.++..+..++..++.+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            23333346789999999988888898887777766543111       12466778888899999999999999999875


Q ss_pred             CCchhHHHHHhcCch---HHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          315 GDDMQTQCVIEYQAL---PCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       315 ~~~~~~~~~~~~~~l---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      .....     ....+   +.+..++.+. +..||..|..++..+..
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            33222     23467   9999999998 99999999999998776

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.94  E-value=0.031  Score=49.93  Aligned_cols=185  Identities=12%  Similarity=0.135  Sum_probs=124.3

Q ss_pred             ChhHHHHHHHHHHHhccCChHHHHHHHHh-CcHHHHHH-------hhCCCC-----hhhHHHHHHHHhHhhcCCchhHHH
Q 009184          256 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVFPRLAE-------FLMHPS-----PSVLIPALRTVGNIVTGDDMQTQC  322 (541)
Q Consensus       256 d~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~l~~L~~-------lL~~~~-----~~v~~~al~~L~nl~~~~~~~~~~  322 (541)
                      +++-++.|+..|+.--+..++....+..+ |.+..|++       .+..+.     ..-...|+..+.-+++ .++....
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            44456776666665444444444444444 55555533       233222     1223455666666665 5555568


Q ss_pred             HHhcCchHHHHHhhcCCC----chhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184          323 VIEYQALPCLLNLLSGNY----KKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI  397 (541)
Q Consensus       323 ~~~~~~l~~L~~lL~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  397 (541)
                      ++++.+.-.|.+.|....    -+.+|-.+..+++.+.. ++++.+.           .+++.+++|..++.++.++.-.
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~-----------fLL~tEiiplCLrime~GselS  161 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVIN-----------FLLTTEIIPLCLRIMESGSELS  161 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHH-----------HHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHH-----------HHHhhhHHHHHHHHHhhccHHH
Confidence            889999989999997653    24688889999999987 6788888           8899999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHc--------CChHHH-hhhcCCCChHHHHHHHHHHHHHHHh
Q 009184          398 KKEAAWAISNATSGGTHEQIKFLVIQ--------GCIKPL-CDLLVCPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~~~~~~~~l~~~--------~~i~~L-~~lL~~~~~~~~~~~l~~L~~l~~~  454 (541)
                      |.-|...+..+..  +.....+++..        .++..+ ..+.+.+++.+...++.+...|.+.
T Consensus       162 KtvAtfIlqKIL~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          162 KTVATFILQKILL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHHHHHHHHHHHH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            9999999999987  44555554421        122222 2344567788888888877776643

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.93  E-value=0.26  Score=45.91  Aligned_cols=173  Identities=16%  Similarity=0.186  Sum_probs=118.4

Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHH
Q 009184          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE  347 (541)
Q Consensus       268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~  347 (541)
                      .++.-++...++-+++.+++..+...+..++.++....+..|-.++....-..  .--...+|.++..+.-..+.++...
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhccCCCcceEEe
Confidence            34444556667778999999999999999999999999999988775332111  1113578888888864448889999


Q ss_pred             HHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-------chhHHHHHHHHHHH-------hcc---
Q 009184          348 ACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-------EFDIKKEAAWAISN-------ATS---  410 (541)
Q Consensus       348 a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-------~~~v~~~a~~aL~n-------l~~---  410 (541)
                      ....|+|+.++.....+           .-+..|.++.|...+...       +..-++.||..++|       +..   
T Consensus       345 GTGFLSNVVAHKq~VKe-----------lAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWI  413 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKD-----------IAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWI  413 (619)
T ss_dssp             HHHHHHHHSTTCHHHHH-----------HHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred             cchHHHHHHhcccchHH-----------HHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEE
Confidence            99999999998887776           667889999999877542       23334445555554       432   


Q ss_pred             ---CC--------CHHHHHHHHHcCChHHHhhhcCCCC---h---HHHHHHHHHHHHHHH
Q 009184          411 ---GG--------THEQIKFLVIQGCIKPLCDLLVCPD---P---RIVTVCLEGLENILK  453 (541)
Q Consensus       411 ---~~--------~~~~~~~l~~~~~i~~L~~lL~~~~---~---~~~~~~l~~L~~l~~  453 (541)
                         +|        +..+.-.+++.++++.|+.+|+.+.   +   +++..++..+-.+++
T Consensus       414 Pm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR  473 (619)
T 3c2g_A          414 PTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR  473 (619)
T ss_dssp             CCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc
Confidence               11        1233344556678899999987543   2   455566655544443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.83  E-value=0.12  Score=48.31  Aligned_cols=202  Identities=12%  Similarity=0.099  Sum_probs=145.1

Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh---hh---hchHHHHHHhhccCChhHHHHHHHHHHH
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD---QV---SPALPALAHLIHSNDDEVLTDACWALSY  269 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~  269 (541)
                      .+...+.+..|+..| ..-+-+.+..++.++.++.+........   ..   ..++..|+..-  +++++...+-..|..
T Consensus        73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRe  149 (341)
T 1upk_A           73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHH
Confidence            344556777788777 6667888999999999999876332221   11   23333333333  345555555555555


Q ss_pred             hccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhc---CchHHHHHhhcCCCchhHHH
Q 009184          270 LSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKK  346 (541)
Q Consensus       270 l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~  346 (541)
                      ++. .+.....++..+.+..+...+..++-++..-|..++..+.+.....+...+..   .++..+-.+|.++ +.-+|.
T Consensus       150 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR  227 (341)
T 1upk_A          150 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR  227 (341)
T ss_dssp             HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred             HHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence            554 44456667888888899999999999999999999999988766555555543   3677788889998 999999


Q ss_pred             HHHHHHHHHhcC--ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184          347 EACWTVSNITAG--NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  412 (541)
Q Consensus       347 ~a~~~L~nl~~~--~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  412 (541)
                      .++..|+.+...  +...+..          ++-+..-+..++.+|.+....++-+|-.++--++.+.
T Consensus       228 QSlKLLgelLldr~N~~vM~~----------Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTK----------YISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHH----------HTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhCchHHHHHHH----------HhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            999999999874  3333330          3345667889999999999999999999988887643

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.41  E-value=0.42  Score=46.95  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=94.1

Q ss_pred             CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHH
Q 009184          171 PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH  250 (541)
Q Consensus       171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~  250 (541)
                      .+...+..|+..|..+..+-|...+.     ++..++.+. .+.+..++..|...|..+|.+      .....+...|++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            56889999999999999888876555     577888888 888999999999999999987      346788899999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 009184          251 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (541)
Q Consensus       251 lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  313 (541)
                      +|+++++.-...+-++|..+...++.        +.+..+..-+..+++.+|..++..|..-.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl  162 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKL  162 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            99999888777777777777655442        23333444443357788988888875443

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.23  E-value=0.0033  Score=57.06  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=28.7

Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184          288 PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (541)
Q Consensus       288 ~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (541)
                      +.|..++.++++.|+..+...++                  .+.|..+ .++ +..||..+...|
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L  241 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence            45666677777777777777654                  2334444 555 788887776544

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.12  E-value=1.2  Score=43.84  Aligned_cols=124  Identities=16%  Similarity=0.142  Sum_probs=88.8

Q ss_pred             ChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHh
Q 009184          214 PKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEF  293 (541)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~l  293 (541)
                      .+....+.|+..+..+....|    ......+..++.+....|..|+..|+..|-.+|..  +...     .+.+.|+++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP----~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~-----kiaDvL~Ql  108 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFP----ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP-----RVADILTQL  108 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH-----HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCh----hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh-----hHHHHHHHH
Confidence            357888999999998888765    34467888999999999999999999999999976  3333     466789999


Q ss_pred             hCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       294 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      |..+++.-...+-.+|..+...++..        .+..+..-+.++ ++.+|..+...|..-..
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~-~e~~Rer~lkFi~~kl~  163 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG-EDIVRERAIKFLSTKLK  163 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS-CHHHHHHHHHHHHHHGG
T ss_pred             HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc-chHHHHHHHHHHHHHHh
Confidence            99888766666666665555444322        233344444445 67788887777765443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.08  E-value=0.19  Score=44.59  Aligned_cols=145  Identities=15%  Similarity=0.053  Sum_probs=104.2

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhH
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAG-DSPRCR  194 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~r  194 (541)
                      .++....+.+++. .++|..|+..|+.+ ...+         ..++.+.. +...++-.|++.+..+++.++. ..++  
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            3555566666666 79999999988887 3111         23566666 5556889999999999999884 3332  


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                            ..++.+.... .+++..+++.++..+...+.. + ........++|.|-.+..+++.-|+..+.|.|..++..+
T Consensus       139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                  1455666666 888999999999887665543 2 112233557788888887888889999999999999988


Q ss_pred             hHHHHHHHH
Q 009184          275 NDKIQAVIE  283 (541)
Q Consensus       275 ~~~~~~~~~  283 (541)
                      ++....+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            876655554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.92  E-value=0.15  Score=45.60  Aligned_cols=153  Identities=16%  Similarity=0.167  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCC-----hhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHH
Q 009184          261 TDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS-----PSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLN  334 (541)
Q Consensus       261 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-----~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~  334 (541)
                      .+|+..+..++.+++. ...++++++.-.|..+|...+     +.+|..+++++|.++..++ +....+++.+++|..++
T Consensus        74 cnaLaLlQcvAshpet-r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           74 CNALALLQCVASHPET-RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHHCTTT-HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHcCcch-hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            3444444556665554 456889999888999986543     4688899999999997554 55667789999999999


Q ss_pred             hhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHH-hhcCchhHHHHHHHHHHHhccCCC
Q 009184          335 LLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL-LENAEFDIKKEAAWAISNATSGGT  413 (541)
Q Consensus       335 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~-l~~~~~~v~~~a~~aL~nl~~~~~  413 (541)
                      .++.+ +.-.|.-|.+++..|..+ .....|+-+ ..-++..+.  .++..++.. .+.+++++-+.++++-..++.  +
T Consensus       153 ime~G-selSKtvAtfIlqKIL~d-d~GL~YiC~-t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiircYlRLsd--n  225 (268)
T 2fv2_A          153 IMESG-SELSKTVATFILQKILLD-DTGLAYICQ-TYERFSHVA--MILGKMVLQLSKEPSARLLKHVVRCYLRLSD--N  225 (268)
T ss_dssp             HHHHS-CHHHHHHHHHHHHHHHHS-HHHHHHHTS-SHHHHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--S
T ss_pred             HHhhc-cHHHHHHHHHHHHHHhcc-chhHHHHHc-cHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc--C
Confidence            99999 888888999999988764 333431111 000111111  133333333 345678999999999999987  5


Q ss_pred             HHHHHHHH
Q 009184          414 HEQIKFLV  421 (541)
Q Consensus       414 ~~~~~~l~  421 (541)
                      +..+..+.
T Consensus       226 ~rar~aL~  233 (268)
T 2fv2_A          226 PRAREALR  233 (268)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.74  E-value=0.13  Score=46.22  Aligned_cols=163  Identities=15%  Similarity=0.123  Sum_probs=109.1

Q ss_pred             hhHHHHHhcCchHHHHHhhcC----C------CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHHH
Q 009184          318 MQTQCVIEYQALPCLLNLLSG----N------YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGPL  386 (541)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~----~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L  386 (541)
                      ...+.+ ..+++..|+.+|..    .      .+.....+++.+|..+.. +.....           .++ ..+.+..|
T Consensus        35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~-----------~vl~~~~~i~~l  101 (233)
T 2f31_A           35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIK-----------TMLETEEGILLL  101 (233)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHH-----------HHHTSSSHHHHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHH-----------HHHcCcHHHHHH
Confidence            444444 34566666666532    1      134667788888888875 455555           555 55688889


Q ss_pred             HHHhhcCchhHHHHHHHHHHHhccCCC-----HHHHHHH------HHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHHh
Q 009184          387 VALLENAEFDIKKEAAWAISNATSGGT-----HEQIKFL------VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKV  454 (541)
Q Consensus       387 ~~~l~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~  454 (541)
                      ...+.++.+.++..++..|..++....     ......+      -+..-...+++.++ ..+.+....++..+..++..
T Consensus       102 ~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~  181 (233)
T 2f31_A          102 VRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  181 (233)
T ss_dssp             HTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence            888988899999999888877765432     1111221      12235677888887 45678888888888888876


Q ss_pred             hHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHH
Q 009184          455 GEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSV  498 (541)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~  498 (541)
                      .+....     --.++..|..+|..+.|+.+....++++...-.
T Consensus       182 ~~dl~~-----R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          182 AEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             CCCHHH-----HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             CCCHHH-----HHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence            543321     123577788899999999999989988765443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.52  E-value=0.77  Score=42.93  Aligned_cols=173  Identities=12%  Similarity=0.068  Sum_probs=105.4

Q ss_pred             HHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCC----hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChh
Q 009184          118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA----VPIFVKLLYS-PSDDVREQAVWALGNIAGDSPR  192 (541)
Q Consensus       118 i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~  192 (541)
                      +..+.++++.+  .+.+.-++..+.-.+. .+.....+.+...    +..++..+.+ ..+..+-.++++++|+..... 
T Consensus       105 l~~l~kil~WP--~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~-  180 (304)
T 3ebb_A          105 LQILWKAINCP--EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA-  180 (304)
T ss_dssp             HHHHHHHHTSC--TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH-
T ss_pred             HHHHHHHHcCC--HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch-
Confidence            45666666554  3566677777766655 4555555543322    2233344433 456678899999999987765 


Q ss_pred             hHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHH
Q 009184          193 CRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIH-SNDDEVLTDACWAL  267 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~-~~d~~v~~~a~~~L  267 (541)
                      .++.+...  ...++..+.   .+.+..++..++.++.|++-.. ..........++..+..++. ..|.+....++.+|
T Consensus       181 g~~~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            66665542  333444332   4567788888888999888543 11222333445556666665 35889999999999


Q ss_pred             HHhccCChHHHHHHHHhCcHHHHHHhhCC
Q 009184          268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMH  296 (541)
Q Consensus       268 ~~l~~~~~~~~~~~~~~g~l~~L~~lL~~  296 (541)
                      +++...+.+..+.....|+-..+-...+.
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence            99997765544433333555555555544

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.38  E-value=2  Score=48.75  Aligned_cols=310  Identities=7%  Similarity=0.019  Sum_probs=165.4

Q ss_pred             CHHHHHHhhcCC--CHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhc-CCCcHHHHHHHHHHHHHHhcC---
Q 009184           74 NLPVMVAGVWSN--DSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLL-REDYPQLQFEAAWALTNIASG---  147 (541)
Q Consensus        74 ~l~~l~~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~-~~~~~~i~~~a~~~L~~l~~~---  147 (541)
                      .+..++..+.++  ++..+.+|-..|..+-..   +        .....+...|. .+.++.++..|+..|.+....   
T Consensus        12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~---p--------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~   80 (1204)
T 3a6p_A           12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK---C--------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWN   80 (1204)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH---C--------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC---c--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcc
Confidence            345555555554  667788888888776432   1        12334444333 333489999999999987642   


Q ss_pred             --ChhHHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q 009184          148 --TSEHTKVVIDHGAVPIFVKLLYS---PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA  222 (541)
Q Consensus       148 --~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a  222 (541)
                        +++.+..+. ..++..+......   ....++...+.++..|+...-.-+   . .++++.++..+..  +......+
T Consensus        81 ~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~---W-p~ll~~L~~~~~~--~~~~~e~~  153 (1204)
T 3a6p_A           81 GMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH---W-PDMLIELDTLSKQ--GETQTELV  153 (1204)
T ss_dssp             GSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT---C-TTHHHHHHHHHHT--CHHHHHHH
T ss_pred             cCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc---c-hHHHHHHHHHhcC--CHHHHHHH
Confidence              344444443 3345554443211   458899999999999874321100   0 1246667777633  34557778


Q ss_pred             HHHHHhhhcCC-C--CCChhh-----------hhchHHHHHHhhcc-------------------CChhHHHHHHHHHHH
Q 009184          223 TWTLSNFCRGK-P--QPPFDQ-----------VSPALPALAHLIHS-------------------NDDEVLTDACWALSY  269 (541)
Q Consensus       223 ~~~L~~l~~~~-~--~~~~~~-----------~~~~l~~L~~lL~~-------------------~d~~v~~~a~~~L~~  269 (541)
                      +.+|..++... .  ......           ...+++.+..++..                   .+..+...++.++..
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            88888887542 1  111110           11334444444432                   123466667777765


Q ss_pred             hccCChHHHHHHHHhC--cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc--hhHHHHHh---cCchHHHHHhhc-----
Q 009184          270 LSDGTNDKIQAVIEAG--VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD--MQTQCVIE---YQALPCLLNLLS-----  337 (541)
Q Consensus       270 l~~~~~~~~~~~~~~g--~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~~~~---~~~l~~L~~lL~-----  337 (541)
                      ...--+-  ..+.+..  +++.+..++.  ++.++..|+.||..++....  .....++.   ...+..++..+.     
T Consensus       234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~  309 (1204)
T 3a6p_A          234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG  309 (1204)
T ss_dssp             TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred             HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence            5443221  2233332  6777776665  46689999999999997542  21111221   112334555442     


Q ss_pred             --CCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc-hhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhcc
Q 009184          338 --GNYKKSIKKEACWTVSNITAGNREQIQVIMHVH-AFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATS  410 (541)
Q Consensus       338 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~  410 (541)
                        +..+.++.+..+..+..+..   . ...+.... .......+ .++++.++.++.+++..+-..++.....+..
T Consensus       310 ~~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l-~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~  380 (1204)
T 3a6p_A          310 GLVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNF-GKYLESFLAFTTHPSQFLRSSTQMTWGALFR  380 (1204)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred             CCccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHH-HHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence              11135666777777777652   1 11000000 00000000 1467777777777777777777766665544

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.24  E-value=0.9  Score=40.73  Aligned_cols=154  Identities=12%  Similarity=0.118  Sum_probs=96.0

Q ss_pred             HHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCC----------CcHHHHHHHHHHHHHHhc
Q 009184           78 MVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRE----------DYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        78 l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~l~~  146 (541)
                      +++.|++.. +......+..|+..+...+..-++.+ ..+++..|+++|..-          .+...+..++.||..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            344454432 22223455666655554322225555 456677777776531          125788999999999987


Q ss_pred             CChhHHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhcCC
Q 009184          147 GTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNGQ  213 (541)
Q Consensus       147 ~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~Ll~~l~~~  213 (541)
                       +......++. .+.+..|...|.++++.++..++..|+.+|..+. .. ...++          +..-+.+++..+...
T Consensus        84 -~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  162 (233)
T 2f31_A           84 -NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  162 (233)
T ss_dssp             -SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred             -ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence             4555666665 5788999999999999999999999998885443 12 22222          222455677777445


Q ss_pred             ChhhHHHHHHHHHHhhhcCC
Q 009184          214 PKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~  233 (541)
                      .+.+.+..++..+..+....
T Consensus       163 ~~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          163 TSIALKVGCLQLINALITPA  182 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             ChHHHHHHHHHHHHHHHCCC
Confidence            55666666665555566554

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.17  E-value=0.23  Score=48.33  Aligned_cols=161  Identities=16%  Similarity=0.123  Sum_probs=111.1

Q ss_pred             chhHHHHHhcCchHHHHHhhcC----------CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHH
Q 009184          317 DMQTQCVIEYQALPCLLNLLSG----------NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGP  385 (541)
Q Consensus       317 ~~~~~~~~~~~~l~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~  385 (541)
                      ....+.+. .+++..|+.+|..          ..+...+..++.||..+.. +.....           .++ ....+..
T Consensus       100 ~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~-----------~vl~~~~~i~~  166 (383)
T 3eg5_B          100 VSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIK-----------TMLETEEGILL  166 (383)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHH-----------HHHTCSSHHHH
T ss_pred             cHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHH-----------HHHcChHHHHH
Confidence            34455555 5667777777641          1134677888889988875 355555           555 5678899


Q ss_pred             HHHHhhcCchhHHHHHHHHHHHhccCCC-----HHHHHHH------HHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHH
Q 009184          386 LVALLENAEFDIKKEAAWAISNATSGGT-----HEQIKFL------VIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILK  453 (541)
Q Consensus       386 L~~~l~~~~~~v~~~a~~aL~nl~~~~~-----~~~~~~l------~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~  453 (541)
                      |...+.+..+.++..|+..|.-++....     ......+      .+..-...++..|+. .+.+....++..+..++.
T Consensus       167 l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~  246 (383)
T 3eg5_B          167 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT  246 (383)
T ss_dssp             HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHc
Confidence            9999999999999999999988776543     1111111      123457788888886 577888888888888887


Q ss_pred             hhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHH
Q 009184          454 VGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYE  495 (541)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~  495 (541)
                      ..+....     --.++..|..+|..+.+..|....++++..
T Consensus       247 ~~~dl~~-----R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          247 PAEELDF-----RVHIRSELMRLGLHQVLQELREIENEDMKV  283 (383)
T ss_dssp             TCCCHHH-----HHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred             CCCCHHH-----HHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence            6543321     122567788899999999998888887754

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.95  E-value=2  Score=48.80  Aligned_cols=289  Identities=11%  Similarity=0.073  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----ChhhHHHHHhcCCh
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL--YSPSDDVREQAVWALGNIAGD-----SPRCRDLVLSQGGL  203 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~r~~i~~~g~i  203 (541)
                      +..+.+|-..|..+-.. +         .+...+...|  .+.+..+|..|+..|.|....     .++.+..+. ...+
T Consensus        27 ~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll   95 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVM   95 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHH
T ss_pred             hHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHH
Confidence            67788888888776542 2         1233333333  346789999999999987632     222233322 2223


Q ss_pred             HHHHHhhcC--CChhhHHHHHHHHHHhhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-------
Q 009184          204 VPLLAQLNG--QPKLSMLRNATWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDG-------  273 (541)
Q Consensus       204 ~~Ll~~l~~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~-------  273 (541)
                      ..+......  .....++..++.++..++... |.    ....+++.++.++.+ ++.....++.+|..++..       
T Consensus        96 ~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~  170 (1204)
T 3a6p_A           96 ELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL  170 (1204)
T ss_dssp             HHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred             HHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence            333222101  135677888888999888765 42    246778888888865 455566677777777532       


Q ss_pred             ChHHHHH----HHHh--CcHHHHHHhhCC-------------------CChhhHHHHHHHHhHhhcCCchhHHHHHhcC-
Q 009184          274 TNDKIQA----VIEA--GVFPRLAEFLMH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ-  327 (541)
Q Consensus       274 ~~~~~~~----~~~~--g~l~~L~~lL~~-------------------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~-  327 (541)
                      ...+...    +.+.  .++..+..++..                   .+..++..++.++.+...--+.  ..+.+.. 
T Consensus       171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~  248 (1204)
T 3a6p_A          171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENC  248 (1204)
T ss_dssp             CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccc
Confidence            1111111    1111  223333333322                   1234667788888776653332  1233332 


Q ss_pred             -chHHHHHhhcCCCchhHHHHHHHHHHHHhcCC--hHHHHHHHhhchhhHHHHHhcCcHHHHHHHhh--------cCchh
Q 009184          328 -ALPCLLNLLSGNYKKSIKKEACWTVSNITAGN--REQIQVIMHVHAFSIIAVIEANIIGPLVALLE--------NAEFD  396 (541)
Q Consensus       328 -~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~--------~~~~~  396 (541)
                       +++.+..++.   ++.++..|+.+|..++...  ++....++        .++....+..++..+.        ..+.+
T Consensus       249 ~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li--------~~l~~~~l~~l~~~~~~~~~~~~~e~d~e  317 (1204)
T 3a6p_A          249 KLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLM--------VLFGDVAMHYILSAAQTADGGGLVEKHYV  317 (1204)
T ss_dssp             HHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGG--------GGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred             hHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHH--------HHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence             6777776665   4578999999999999843  33222000        1111111334444432        22456


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHH-----------cCChHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 009184          397 IKKEAAWAISNATSGGTHEQIKFLVI-----------QGCIKPLCDLLVCPDPRIVTVCLEGLENILK  453 (541)
Q Consensus       397 v~~~a~~aL~nl~~~~~~~~~~~l~~-----------~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~  453 (541)
                      +.+..+..+..+..    . ...++.           .++++.+..+...++..+...++..-..+++
T Consensus       318 ~~k~l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~  380 (1204)
T 3a6p_A          318 FLKRLCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFR  380 (1204)
T ss_dssp             HHHHHHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHh
Confidence            67777777776652    1 122221           1235666666666666655555554443443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.80  E-value=3.2  Score=46.21  Aligned_cols=167  Identities=14%  Similarity=0.157  Sum_probs=108.0

Q ss_pred             hHHHHHhhCC----CCHHHHHHHHHHHHHhh----CCChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhh
Q 009184          161 VPIFVKLLYS----PSDDVREQAVWALGNIA----GDSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNF  229 (541)
Q Consensus       161 i~~L~~lL~~----~~~~v~~~a~~~L~nl~----~~~~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l  229 (541)
                      +..+..++.+    .++.+++.++.+++.++    ...+.|..     ..++.+.+.+.   ...+..-...++.+|.|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            4555666655    56788888998888875    23222211     12344444431   334566778889999998


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh--CCCChh
Q 009184          230 CRGKPQPPFDQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL--MHPSPS  300 (541)
Q Consensus       230 ~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~  300 (541)
                      -..          ..++.|.+++..       ....++..|+|+|..+....+...+        +.++++.  ...+++
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            652          356777777641       2356888999999999876554333        4566676  446788


Q ss_pred             hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCCh
Q 009184          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNR  360 (541)
Q Consensus       301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  360 (541)
                      +|..|+..|-.  +.++.        ..+..+...+....+..|.......|.+++....
T Consensus       530 vRiaA~~~Lm~--t~P~~--------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~  579 (1056)
T 1lsh_A          530 LRIRSCIVFFE--SKPSV--------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  579 (1056)
T ss_dssp             HHHHHHHHHHH--TCCCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHH--HCcCH--------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence            99999888743  22221        1345667777775578888888888888887443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.73  E-value=1.6  Score=42.41  Aligned_cols=157  Identities=12%  Similarity=0.116  Sum_probs=104.6

Q ss_pred             HHHHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcC----------CCcHHHHHHHHHHHHHH
Q 009184           76 PVMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----------EDYPQLQFEAAWALTNI  144 (541)
Q Consensus        76 ~~l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----------~~~~~i~~~a~~~L~~l  144 (541)
                      ..++..|.++. ..-....+..|+.-+...+..-++.++ .+++..|+.+|..          ..+...+..++.||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            35666666643 233345677777776653223356676 5668888888752          11257889999999999


Q ss_pred             hcCChhHHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhc
Q 009184          145 ASGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLN  211 (541)
Q Consensus       145 ~~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~Ll~~l~  211 (541)
                      .. +......++. ...+..|...+.++++.++..++..|+.+|.... .. ...++          +..-+..++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            87 4555666665 5788999999999999999999999999996543 21 22222          2334677788885


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCC
Q 009184          212 GQPKLSMLRNATWTLSNFCRGKP  234 (541)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~~  234 (541)
                      ...+.+.+..++..+..+....+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~  249 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAE  249 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCC
Confidence            44566666666666666666543

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.53  E-value=0.71  Score=40.90  Aligned_cols=139  Identities=10%  Similarity=0.042  Sum_probs=96.5

Q ss_pred             HHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhcc-CChHHHHHHH
Q 009184          205 PLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAH-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI  282 (541)
Q Consensus       205 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~l~~-~~~~~~~~~~  282 (541)
                      .+...|-+++..+++..|+.+|..+ .        .....++.+.. +...++-.|++-++.++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            4444454666678898999887766 2        12557777777 5556678899998888888774 2222      


Q ss_pred             HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH
Q 009184          283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ  362 (541)
Q Consensus       283 ~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  362 (541)
                        ..++.+...+.+++..+|..|...+.-.+.......   --.-+++.|-.+..++ +.-||+...|.|..++..+|+.
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~---dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKE---NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTT---CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhc---CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence              256778889999999999999887754332211000   0012455555566666 8899999999999999999987


Q ss_pred             HH
Q 009184          363 IQ  364 (541)
Q Consensus       363 ~~  364 (541)
                      +.
T Consensus       213 V~  214 (240)
T 3l9t_A          213 VK  214 (240)
T ss_dssp             HH
T ss_pred             HH
Confidence            77

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.25  E-value=0.88  Score=44.26  Aligned_cols=139  Identities=14%  Similarity=0.090  Sum_probs=96.4

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHH-hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHH----
Q 009184          341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVI-EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHE----  415 (541)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~----  415 (541)
                      +.....+++.||..+.. +.....           .++ ..+.+..|...+.+..+.++..++..|..++....++    
T Consensus        71 d~~~~~~~l~CLkalmN-~~~Gl~-----------~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~  138 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMN-NKFGIK-----------TMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNE  138 (386)
T ss_dssp             HHHHHHHHHHHHHHHTS-SHHHHH-----------HHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHH
T ss_pred             hHHHHHHHHHHHHHHhC-CHHHHH-----------HHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHH
Confidence            45667888888888875 344555           444 5578888998898888999999988777766543211    


Q ss_pred             -HHHHH------HHcCChHHHhhhcC-CCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc
Q 009184          416 -QIKFL------VIQGCIKPLCDLLV-CPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  487 (541)
Q Consensus       416 -~~~~l------~~~~~i~~L~~lL~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~  487 (541)
                       ....+      .+..-...|++.+. ..+.+....++..+..|+...+....     --.++..|..+|..+.|..|..
T Consensus       139 ~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~-----R~~LR~Ef~~~GL~~il~~Lr~  213 (386)
T 2bnx_A          139 RVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELRE  213 (386)
T ss_dssp             HHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHCChHHHHHHHhc
Confidence             11111      12245667888776 45677888888888888876554332     1236777888999999999988


Q ss_pred             CCCHHHHHH
Q 009184          488 HDNAEIYEK  496 (541)
Q Consensus       488 ~~~~~i~~~  496 (541)
                      ..++++...
T Consensus       214 ~~~~~L~~Q  222 (386)
T 2bnx_A          214 IENEDMKVQ  222 (386)
T ss_dssp             CCCHHHHHH
T ss_pred             cCChhHHHH
Confidence            888877544

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=93.86  E-value=0.52  Score=44.09  Aligned_cols=141  Identities=11%  Similarity=0.076  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHccCCCCcHHHHH-hcC----CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC--CC
Q 009184           88 GVQYECTTQFRKLLSIERSPPIEEVI-RSG----VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH--GA  160 (541)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~i-~~g----~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~--g~  160 (541)
                      +.++-++..+|-.+.   .+...... +.+    ++..+...+.++..+..+.-++++++|+.. ++..+..+...  .+
T Consensus       117 ~~~fPvLDLlRl~~l---~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~i  192 (304)
T 3ebb_A          117 DIVFPALDILRLSIK---HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESL  192 (304)
T ss_dssp             TTCHHHHHHHHHHTT---SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHH
T ss_pred             HhHHHHHHHHHHHHc---CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHH
Confidence            345556666665442   22222222 221    233344455444347789999999999988 56677766642  34


Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          161 VPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      ++.+...+.+++..++..+...+.|++......++.-.....+..+..++....+.+....++-+|.+|...
T Consensus       193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            555566666678999999999999998421100000000112344445554556788888888888888865

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.74  E-value=7.6  Score=43.24  Aligned_cols=160  Identities=13%  Similarity=0.174  Sum_probs=102.6

Q ss_pred             hhhHHHHHHHHHHhh----hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHH
Q 009184          215 KLSMLRNATWTLSNF----CRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRL  290 (541)
Q Consensus       215 ~~~~~~~a~~~L~~l----~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L  290 (541)
                      ++.+...++.+++.|    |...+......+..+...+...+...+.+-..-++.+|+|+...           ..++.|
T Consensus       408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l  476 (1056)
T 1lsh_A          408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI  476 (1056)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence            445555555555544    54433333344566666677777777888888899999998642           345666


Q ss_pred             HHhhCC-------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCChHH
Q 009184          291 AEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQ  362 (541)
Q Consensus       291 ~~lL~~-------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~  362 (541)
                      .+++..       ....++..|+++|.+++...+...        -+.+++++.+ ..++++|..|+..|-..   +|..
T Consensus       477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~~  545 (1056)
T 1lsh_A          477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFES---KPSV  545 (1056)
T ss_dssp             HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCCH
T ss_pred             HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHH---CcCH
Confidence            677632       134578889999999986554333        2346666632 33789999999888543   2221


Q ss_pred             HHHHHhhchhhHHHHHhcCcHHHHHHHhhc-CchhHHHHHHHHHHHhccCCCH
Q 009184          363 IQVIMHVHAFSIIAVIEANIIGPLVALLEN-AEFDIKKEAAWAISNATSGGTH  414 (541)
Q Consensus       363 ~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~  414 (541)
                      .                  .+..+...+.. .+.+|.......|.+++....+
T Consensus       546 ~------------------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          546 A------------------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             H------------------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             H------------------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            1                  23345555555 5788888888888888876655

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=93.32  E-value=0.043  Score=49.75  Aligned_cols=136  Identities=21%  Similarity=0.214  Sum_probs=70.0

Q ss_pred             HHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-----HhhCC-Chh
Q 009184          119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG-----NIAGD-SPR  192 (541)
Q Consensus       119 ~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-----nl~~~-~~~  192 (541)
                      +.|..++++++ +.++..++..+   .               .+.|..++++++..++..++..+.     .+..+ ++.
T Consensus       101 ~~L~~ll~D~d-~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~l~~~~l~~l~~D~d~~  161 (244)
T 1lrv_A          101 EQLSALMFDED-REVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQ  161 (244)
T ss_dssp             GGGGGTTTCSC-HHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHH
T ss_pred             HHHHHHHcCCC-HHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHcCCCHH
Confidence            34566677776 78888777632   1               123444556666777666655211     00100 111


Q ss_pred             hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 009184          193 CRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSD  272 (541)
Q Consensus       193 ~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~  272 (541)
                      .|..+... ..+.++..+..+++..++..++..+                 ..+.|..++.+++..|+..+...+.    
T Consensus       162 VR~~aa~~-l~~~ll~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~~l~----  219 (244)
T 1lrv_A          162 VRKLVAKR-LPEESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVEHAS----  219 (244)
T ss_dssp             HHHHHHHH-SCGGGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHHHSC----
T ss_pred             HHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHHcCC----
Confidence            22222211 1112222222555555555555431                 1134555666667777766665532    


Q ss_pred             CChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 009184          273 GTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVG  310 (541)
Q Consensus       273 ~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~  310 (541)
                                    .+.|..+ .++++.|+..+...||
T Consensus       220 --------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          220 --------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             --------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             --------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence                          3555556 8889999998876654

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=92.57  E-value=6.2  Score=38.10  Aligned_cols=251  Identities=13%  Similarity=0.034  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHhcC---ChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc
Q 009184          135 FEAAWALTNIASG---TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (541)
Q Consensus       135 ~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~  211 (541)
                      ..+...+..+...   .+...+..++...+-.|+.++.++|+.-|+..-.+|..+-+.-...|..+... +-..+.+.+.
T Consensus       102 qlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiy  180 (403)
T 3fga_B          102 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIY  180 (403)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhc
Confidence            3344455444442   23333444455567889999999999999999999998876555555554432 2334455443


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccCChh-HHHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 009184          212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAGVFPR  289 (541)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~  289 (541)
                      ......-....+.++..+..+...+- .....-....|+.+-....-. .-.....|+......++.....     ++..
T Consensus       181 e~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~  255 (403)
T 3fga_B          181 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMA  255 (403)
T ss_dssp             TTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHH
T ss_pred             CcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHH-----HHHH
Confidence            33333334456666666666653222 222233344455555444322 1223333444333333333222     2223


Q ss_pred             HHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh
Q 009184          290 LAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH  368 (541)
Q Consensus       290 L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  368 (541)
                      +++.--..++.-...-+.-+..+...-+ ...+.+ ...++..+...+.+. +..|-..|+....|     .. +.    
T Consensus       256 LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i-~~~lf~~la~ci~S~-hfqVAErAL~~wnN-----e~-i~----  323 (403)
T 3fga_B          256 LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EY-IM----  323 (403)
T ss_dssp             HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HH-HH----
T ss_pred             HHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHCCC-CHHHHHHHHHHhcc-----HH-HH----
Confidence            3333322333222233344444444332 222222 224666777788887 77777777655421     11 11    


Q ss_pred             hchhhHHHHHh---cCcHHHHHHHh----hcC-chhHHHHHHHHHHHhcc
Q 009184          369 VHAFSIIAVIE---ANIIGPLVALL----ENA-EFDIKKEAAWAISNATS  410 (541)
Q Consensus       369 ~~~~~~~~l~~---~~~l~~L~~~l----~~~-~~~v~~~a~~aL~nl~~  410 (541)
                             .++.   ..++|.++..+    ... +..++..+..++.-+..
T Consensus       324 -------~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          324 -------SLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             -------HHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence                   2221   12444444443    332 67888888888777654

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=92.41  E-value=4.4  Score=39.26  Aligned_cols=156  Identities=12%  Similarity=0.120  Sum_probs=98.0

Q ss_pred             HHHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcC----C------CcHHHHHHHHHHHHHHh
Q 009184           77 VMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA  145 (541)
Q Consensus        77 ~l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~i~~~a~~~L~~l~  145 (541)
                      .++..|.+.. ..-....+..|+..+...+..-++.+. .+++..|+.+|..    .      .+...+..++.||..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            3455555432 222234556666655543222255554 4567777777642    1      13578899999999998


Q ss_pred             cCChhHHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------hcCChHHHHHhhcC
Q 009184          146 SGTSEHTKVVID-HGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP-RC-RDLVL----------SQGGLVPLLAQLNG  212 (541)
Q Consensus       146 ~~~~~~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~Ll~~l~~  212 (541)
                      . +......++. .+++..+...|.++++.++..++..|+.+|.... .. ...++          +..-+.+++..+..
T Consensus        87 N-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           87 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             C-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            7 4555555554 5788999999999999999999999998885443 21 22222          22345667777755


Q ss_pred             CChhhHHHHHHHHHHhhhcCCC
Q 009184          213 QPKLSMLRNATWTLSNFCRGKP  234 (541)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~~  234 (541)
                      ..+.+.+..++..+..+....+
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~~  187 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPAE  187 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCS
T ss_pred             CChHHHHHHHHHHHHHHHCCCC
Confidence            5666666666666666666543

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=89.41  E-value=11  Score=37.11  Aligned_cols=251  Identities=13%  Similarity=0.027  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhcC---ChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc
Q 009184          135 FEAAWALTNIASG---TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (541)
Q Consensus       135 ~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~  211 (541)
                      ..+...|..+...   ++......++...+-.|+.++.++|+.-|+..-.+|..|-+.-...|..+... +-..+.+.+.
T Consensus       135 qlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~  213 (449)
T 2npp_B          135 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIY  213 (449)
T ss_dssp             HHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            3444555555432   12333444555677889999999999999999999988876555555555433 3344555554


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCChHHHHHHHHhCcHHH
Q 009184          212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVFPR  289 (541)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~d~~v-~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~  289 (541)
                      ......-....+.++..+..+...+- .....-....|+.|.....-.. -.....|+......++.....     ++..
T Consensus       214 e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~  288 (449)
T 2npp_B          214 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMA  288 (449)
T ss_dssp             TCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHH
Confidence            44444445566777777777753222 2222333445555555443222 223334444333333332221     2233


Q ss_pred             HHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHh
Q 009184          290 LAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMH  368 (541)
Q Consensus       290 L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~  368 (541)
                      |++.--..+..-...-+.-|..+....+ ...+.+ ...++..+...+.+. +..|-..|+..+.|     +...     
T Consensus       289 LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i-~~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~i~-----  356 (449)
T 2npp_B          289 LLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYWNN-----EYIM-----  356 (449)
T ss_dssp             HHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HHHH-----
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HHHH-----
Confidence            3333322332222333344444443322 222222 224666777888887 77777777654432     1111     


Q ss_pred             hchhhHHHHHh---cCcHHHHHHHhhc-----CchhHHHHHHHHHHHhcc
Q 009184          369 VHAFSIIAVIE---ANIIGPLVALLEN-----AEFDIKKEAAWAISNATS  410 (541)
Q Consensus       369 ~~~~~~~~l~~---~~~l~~L~~~l~~-----~~~~v~~~a~~aL~nl~~  410 (541)
                             .++.   ..++|.++..+..     -+..|+..+..++.-+..
T Consensus       357 -------~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          357 -------SLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  399 (449)
T ss_dssp             -------HHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred             -------HHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                   1221   1245666665522     146677777777765544

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.01  E-value=6.6  Score=36.14  Aligned_cols=149  Identities=12%  Similarity=0.105  Sum_probs=93.4

Q ss_pred             hHHHHHHhhccC------ChhHHHHHHHHHHHhccCChHHHHHHH-HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184          244 ALPALAHLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVI-EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (541)
Q Consensus       244 ~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  316 (541)
                      -+..+..++.+.      +.+....++-.|..++..-..-.+.+- +..++..|. +.....+.+++.|.++|+....++
T Consensus        23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN  101 (315)
T 3qml_C           23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN  101 (315)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence            344455556554      445677788888888755443344333 334454554 334456779999999999999999


Q ss_pred             chhHHHHHhc--CchHHHHHhhcC----C--CchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHH
Q 009184          317 DMQTQCVIEY--QALPCLLNLLSG----N--YKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVA  388 (541)
Q Consensus       317 ~~~~~~~~~~--~~l~~L~~lL~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~  388 (541)
                      +.....+.+.  .++..+..-|..    .  ....+++.-+.+|.-|...+..               + ....+..|.+
T Consensus       102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---------------F-~~~~m~~L~~  165 (315)
T 3qml_C          102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---------------L-PIYSTVVLQN  165 (315)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---------------C---CCHHHHHH
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---------------h-hhccHHHHHH
Confidence            9887766642  344444433322    1  1335666677777777664321               1 1245577777


Q ss_pred             HhhcC--chhHHHHHHHHHHHhc
Q 009184          389 LLENA--EFDIKKEAAWAISNAT  409 (541)
Q Consensus       389 ~l~~~--~~~v~~~a~~aL~nl~  409 (541)
                      ++...  ++.++..++..+..+.
T Consensus       166 ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          166 VYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHccCCCCHHHHHHHHHHHHHHc
Confidence            77766  8999999999888876

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=88.96  E-value=13  Score=33.58  Aligned_cols=98  Identities=9%  Similarity=0.091  Sum_probs=69.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHh
Q 009184           78 MVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVID  157 (541)
Q Consensus        78 l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~  157 (541)
                      +++..+......+...+...+.++... ++..   . ..+++.++.+..+++ .++|...+..+...+...++....   
T Consensus        20 lln~A~~~~~~~kl~~L~qa~el~~~~-dp~l---l-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~---   90 (257)
T 3gs3_A           20 WCNELVIASPSTKCELLAKVQETVLGS-CAEL---A-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH---   90 (257)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTTT-TGGG---H-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH---
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHcc-CHhH---H-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            333333323368889999999977653 3321   1 335778888776666 999999999999988655544433   


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009184          158 HGAVPIFVKLLYSPSDDVREQAVWALGNI  186 (541)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  186 (541)
                        .++.|..++.++++.+...++.+..++
T Consensus        91 --~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           91 --VINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             --HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence              467888889888999999999888776

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=88.75  E-value=0.34  Score=29.27  Aligned_cols=38  Identities=32%  Similarity=0.571  Sum_probs=27.0

Q ss_pred             HhhhhcCC-CCCchHHhhhhhhHHHHHHHHhhHHHHHhhhh
Q 009184           11 SRRNKYKV-AVDADEGRRRREDNMVEIRKNKREESLQKKRR   50 (541)
Q Consensus        11 ~~~~~~k~-~~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~   50 (541)
                      +|...||+ +...++..+|| + ..+..|++|-+.++..|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr-~-~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRR-R-LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHH-H-HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHH-H-HHHHHHHHHHHHHHHhcC
Confidence            57789998 44444444444 4 688889999998887774

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=88.17  E-value=5  Score=36.88  Aligned_cols=135  Identities=16%  Similarity=0.116  Sum_probs=84.7

Q ss_pred             hhhHHHHHHHHhHhhcCCchhHHHHHh--cCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHH
Q 009184          299 PSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIA  376 (541)
Q Consensus       299 ~~v~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~  376 (541)
                      ......|+-.|-.++..-.... .++.  ...+..|+ +.... .+.++..|+.+++...+.+|..+.           .
T Consensus        42 ~~~le~aLD~L~ElSHDi~~G~-KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~-----------~  107 (315)
T 3qml_C           42 IARLEDSFDRIMEFAHDYKHGY-KIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVE-----------F  107 (315)
T ss_dssp             HHHHHHHHHHHGGGTTSHHHHH-HHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHH-----------H
T ss_pred             HHHHHHHHHHHHHhhhhHHhhh-HHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHH-----------H
Confidence            3456677777777775433333 3333  23344444 22333 678999999999999999999988           4


Q ss_pred             HHh--cCcHHHHHHHhhc-------CchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC--ChHHHHHHH
Q 009184          377 VIE--ANIIGPLVALLEN-------AEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCL  445 (541)
Q Consensus       377 l~~--~~~l~~L~~~l~~-------~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l  445 (541)
                      +.+  ..++..++.-|..       ...-+.+.-+.+|.-|+...  .+   + ....+..|..++...  ++.+...++
T Consensus       108 V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~--~~---F-~~~~m~~L~~ly~~~~~d~~~k~Kvl  181 (315)
T 3qml_C          108 INESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS--ED---L-PIYSTVVLQNVYERNNKDKQLQIKVL  181 (315)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS--TT---C---CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh--Hh---h-hhccHHHHHHHHccCCCCHHHHHHHH
Confidence            443  2444444444432       23356667777777777643  11   1 234567777776666  888999999


Q ss_pred             HHHHHHHH
Q 009184          446 EGLENILK  453 (541)
Q Consensus       446 ~~L~~l~~  453 (541)
                      ..+..++.
T Consensus       182 ~li~d~f~  189 (315)
T 3qml_C          182 ELISKILK  189 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcc
Confidence            98888875

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=87.94  E-value=20  Score=34.49  Aligned_cols=89  Identities=10%  Similarity=0.117  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh
Q 009184           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (541)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (541)
                      ..+...+..++.++-.. ++.    .-.++++.++++-.+.+ .+++...+..|...+....+....     +++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLLK-----LIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence            46888888888876542 332    12568999999988887 999999999999888755555433     46788888


Q ss_pred             hCCCCHHHHHHHHHHHHHhh
Q 009184          168 LYSPSDDVREQAVWALGNIA  187 (541)
Q Consensus       168 L~~~~~~v~~~a~~~L~nl~  187 (541)
                      |.++++.+...++.+.+++.
T Consensus       109 L~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            88889999999998888773

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=84.25  E-value=9.2  Score=36.76  Aligned_cols=129  Identities=15%  Similarity=0.196  Sum_probs=87.1

Q ss_pred             hHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhc
Q 009184          301 VLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA  380 (541)
Q Consensus       301 v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~  380 (541)
                      .+...+.-+..++-..+..   + -.++++.++.+-... +.++|+.++..|...+....+...                
T Consensus        41 ~Kl~~L~q~~EL~l~~dps---L-l~~fl~~il~f~~d~-~~~vRk~~a~FieEa~~~~~el~~----------------   99 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT---L-LDNFLDEIIAFQADK-SIEVRKFVIGFIEEACKRDIELLL----------------   99 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG---G-GGGGHHHHHGGGGCS-CHHHHHHHHHHHHHHHHHCGGGHH----------------
T ss_pred             HHHHHHHHHHHHHhccCHH---H-HHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence            4555555555544322211   1 246788888888877 889999999988888764443332                


Q ss_pred             CcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHc---------------CChHHHhhhcCCCChHHHHHHH
Q 009184          381 NIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQ---------------GCIKPLCDLLVCPDPRIVTVCL  445 (541)
Q Consensus       381 ~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~---------------~~i~~L~~lL~~~~~~~~~~~l  445 (541)
                      .+++.|..++.+.++.|.+.++.+.+++-.    ...++++..               .+-..++.++++.+..++..++
T Consensus       100 ~~l~~L~~LL~d~d~~V~K~~I~~~tslYp----l~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ai  175 (386)
T 3o2t_A          100 KLIANLNMLLRDENVNVVKKAILTMTQLYK----VALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAI  175 (386)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH----HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH----HHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence            467788888888889999998888877631    222222222               2334666777888889999999


Q ss_pred             HHHHHHHHh
Q 009184          446 EGLENILKV  454 (541)
Q Consensus       446 ~~L~~l~~~  454 (541)
                      +.+..++..
T Consensus       176 KFle~VIl~  184 (386)
T 3o2t_A          176 KFVEGLIVT  184 (386)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=81.62  E-value=4.4  Score=33.80  Aligned_cols=73  Identities=12%  Similarity=0.167  Sum_probs=54.6

Q ss_pred             ChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 009184          425 CIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTH-DNAEIYEKSVKLLET  503 (541)
Q Consensus       425 ~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~-~~~~i~~~a~~il~~  503 (541)
                      ++..|..-|.+.++.++..+|..|..+++.+...          |...+-...+++.+..+... .++.|.+++..+|..
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~  122 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE  122 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            4566667778889999999999999988764332          45556666677777666543 788999999999998


Q ss_pred             hCCC
Q 009184          504 YWLD  507 (541)
Q Consensus       504 ~~~~  507 (541)
                      |...
T Consensus       123 W~~~  126 (163)
T 1x5b_A          123 WSEE  126 (163)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20

Probab=81.42  E-value=12  Score=36.00  Aligned_cols=120  Identities=15%  Similarity=0.008  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhcC---ChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhc
Q 009184          135 FEAAWALTNIASG---TSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN  211 (541)
Q Consensus       135 ~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~  211 (541)
                      ..+...|..+...   .+...+..++...+..|+.++.++|+.-|+....+|..+-+.-...|..+... +-..+.+.+.
T Consensus       147 qlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fiy  225 (392)
T 2jak_A          147 QLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIY  225 (392)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence            3444555555432   22333444455677889999999999999999999988876555556555433 3445666664


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCCCC-hhhhhchHHHHHHhhccC
Q 009184          212 GQPKLSMLRNATWTLSNFCRGKPQPP-FDQVSPALPALAHLIHSN  255 (541)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~l~~L~~lL~~~  255 (541)
                      ......-...++.++..+..+...+- .....-....|+.|....
T Consensus       226 e~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~  270 (392)
T 2jak_A          226 ETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVK  270 (392)
T ss_dssp             SSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSG
T ss_pred             ccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCC
Confidence            44444445567777777777763332 222222344455555433

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=81.41  E-value=43  Score=32.86  Aligned_cols=243  Identities=16%  Similarity=0.118  Sum_probs=129.2

Q ss_pred             HHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 009184          109 IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIA  187 (541)
Q Consensus       109 ~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~  187 (541)
                      ....++...+-.|+.++.++| +.-|...-.+|..|-......|..+... +-..+.+++.. ....-....+.+++.|.
T Consensus       155 ~k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi  232 (449)
T 2npp_B          155 AKKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII  232 (449)
T ss_dssp             GGGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred             hhhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence            344556678889999999998 8989888888888877555555554432 22345555533 22222234667777776


Q ss_pred             CCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHH
Q 009184          188 GDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA  266 (541)
Q Consensus       188 ~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~  266 (541)
                      .+-. ..+..... -....|+.+.....-.........++..++..+|.    ....++..|++.--..+..-..--+.-
T Consensus       233 nGfa~PLKeehk~-fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~e  307 (449)
T 2npp_B          233 NGFALPLKEEHKI-FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNE  307 (449)
T ss_dssp             SSCCSSCCHHHHH-HHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred             hccCCCCcHHHHH-HHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH----hHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            4321 11111100 01223333332222233344566666666654432    222333333333222333322223333


Q ss_pred             HHHhccC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh--cCchHHHHHhhcCCC---
Q 009184          267 LSYLSDG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE--YQALPCLLNLLSGNY---  340 (541)
Q Consensus       267 L~~l~~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~--~~~l~~L~~lL~~~~---  340 (541)
                      +..+... .+...+.+.. .++..+...+.+++..|.+.|+..+.|     +.....+.+  ..++|.+...|....   
T Consensus       308 leeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~p~L~~~s~~H  381 (449)
T 2npp_B          308 LEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISDNAAKILPIMFPSLYRNSKTH  381 (449)
T ss_dssp             HHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHTTHHHHHHHHHHHHTSCTTCC
T ss_pred             HHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHHhchhhhHHhhHHHHHHHHHHh
Confidence            3344332 3333333332 577888888999999999998866643     222211111  235667766653221   


Q ss_pred             -chhHHHHHHHHHHHHhcCChHHHH
Q 009184          341 -KKSIKKEACWTVSNITAGNREQIQ  364 (541)
Q Consensus       341 -~~~v~~~a~~~L~nl~~~~~~~~~  364 (541)
                       +..++..+..++.-+...++....
T Consensus       382 Wn~~V~~la~~vlk~l~e~d~~lf~  406 (449)
T 2npp_B          382 WNKTIHGLIYNALKLFMEMNQKLFD  406 (449)
T ss_dssp             SSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHCHHHHH
Confidence             567888888888877776665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	541
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-130
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-89
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-43
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-21
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-11
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	8e-20
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	6e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-10
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-08
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  387 bits (995), Expect = e-130
 Identities = 265/511 (51%), Positives = 336/511 (65%), Gaps = 25/511 (4%)

Query: 12  RRNKYKVA--VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQN-------QQPLAND 62
           RR  +K      ADE RRRR+   VE+RK KR+E+L K+R             +   +  
Sbjct: 6   RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 65

Query: 63  VNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFV 122
            +    ++  + LP M   + S+D   Q   T +FR++LS E  PPI+ VI++GVVPR V
Sbjct: 66  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 125

Query: 123 EFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
           EF+       LQ EAAWALTNIASGTS  TKVV+D  AVP+F++LLY+ S +V+EQA+WA
Sbjct: 126 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 185

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPPFDQV 241
           LGN+AGDS   RD VL    + P+L  L    K S++R ATWTLSN CRGK PQP +  V
Sbjct: 186 LGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 244

Query: 242 SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSV 301
           S ALP LA LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RL E L H S  V
Sbjct: 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 304

Query: 302 LIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNRE 361
             PALR VGNIVTG+D+QTQ VI    LP L  LLS + K++IKKEACWT+SNITAGN E
Sbjct: 305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-SPKENIKKEACWTISNITAGNTE 363

Query: 362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTH--EQIKF 419
           QIQ           AVI+AN+I PLV LLE AE+  KKEA WAISNA+SGG    + I++
Sbjct: 364 QIQ-----------AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 412

Query: 420 LVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGL 479
           LV QGCIKPLCDLL   D RI+ V L+ LENILK+GEA+K     ++N     I+ A G+
Sbjct: 413 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 472

Query: 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDED 510
           EKI + Q ++N +IYEK+ K++ETY+ ++ED
Sbjct: 473 EKIFNCQQNENDKIYEKAYKIIETYFGEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  280 bits (715), Expect = 2e-89
 Identities = 207/436 (47%), Positives = 279/436 (63%), Gaps = 22/436 (5%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           +  +V G+ SN+   Q + T   RKLLS E+ PPI+ +IR+G++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
           FE+AWALTNIASGTSE TK V+D GA+P F+ LL SP   + EQAVWALGNIAGD    R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 195 DLVLSQGGLVPLLAQLNGQP----KLSMLRNATWTLSNFCRGKPQ-PPFDQVSPALPALA 249
           DLV+  G + PLLA L            LRN TWTLSN CR K   PP D V   LP L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 250 HLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV 309
            L+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+L + L      ++ PALR +
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHV 369
           GNIVTG D QTQ VI+  AL    +LL+ N K +I+KEA WT+SNITAG ++QIQ +++ 
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 370 HAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL 429
                       ++  LV +L  A+F  +KEAAWAI+N TSGGT EQI +LV  G I+PL
Sbjct: 314 G-----------LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL 362

Query: 430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHD 489
            +LL   D +I+ V L+ + NI +  E        +    + MI++  GL+KIE+LQ H+
Sbjct: 363 MNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETEKLSIMIEECGGLDKIEALQRHE 417

Query: 490 NAEIYEKSVKLLETYW 505
           N  +Y+ S+ L+E Y+
Sbjct: 418 NESVYKASLNLIEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (401), Expect = 1e-43
 Identities = 60/450 (13%), Positives = 127/450 (28%), Gaps = 59/450 (13%)

Query: 118 VPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVRE 177
           +P+ V++L  +D  + Q   A+ + +         + V   G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 178 QAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPP 237
            A  AL N+   S   +     Q G+   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 238 FDQVSPALPALAHLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 282
                        +I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 283 EAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKK 342
            +G+   L  ++ +   +           +    ++  +   E       L   + N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 343 SIKKEACWTVSNITAGNREQIQVIMHV--HAFSIIAVIEANIIGPLVALLENAEFDIKKE 400
                 C++  +    N      +     +      +  ++ I   + L+  ++ D   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 401 AAWAISNATSGGTHEQI-----KFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVG 455
           A        +               + +  +  +  LL   +  +V      L N+ +  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 456 EAEKNLGNTDVNVF-----------------------------------TQMIDDAEGLE 480
              + +GN                                          +    +  L 
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 481 KIESL-QTHDNAEIYEKSVKLLETYWLDDE 509
            I +L ++  + +  E +  LL   W   E
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (175), Expect = 4e-14
 Identities = 44/319 (13%), Positives = 94/319 (29%), Gaps = 39/319 (12%)

Query: 115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDD 174
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 175 VR------EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ--------LNGQPKLSMLR 220
            R      E  +  L N++            Q       A          + +    M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 221 NATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLT-DACWALSYLSDGTNDKIQ 279
           N    L           +   S A+    +L+  +  +        AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 280 A-----VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLN 334
                  ++    P++A  L   +  V+      + N+          V+  Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 335 LLSGNYKKS-----IKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVAL 389
           LL+ +   +     I   AC+TV N+ A   +  +               ++++  ++ L
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAK-----------QYFSSSMLNNIINL 427

Query: 390 LENAEFD-IKKEAAWAISN 407
             ++      + A   +S+
Sbjct: 428 CRSSASPKAAEAARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 1e-12
 Identities = 27/313 (8%), Positives = 70/313 (22%), Gaps = 29/313 (9%)

Query: 201 GGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSP-ALPALAHLIHSNDDEV 259
           G  +P   Q              + + + C               +  L  L+ S +  V
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQ 319
              A  AL  L   +                   L     + +   L  +   ++  D  
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 320 TQCVIEYQALPCLLNLLSGNYK--------------KSIKKEACWTVSNITAGNREQIQV 365
            + +I          ++                     +   A   + N+++ +  +  +
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 366 IMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGC 425
             +             +I  L+A ++N     + +     +               +   
Sbjct: 181 RNYSG-----------LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR 229

Query: 426 IKPLCDLLVCPDPRIVTV-CLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEK--I 482
            + L            +  C     + +     +  L   + N             +  +
Sbjct: 230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYL 289

Query: 483 ESLQTHDNAEIYE 495
             +         E
Sbjct: 290 NLMGKSKKDATLE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 4e-10
 Identities = 24/186 (12%), Positives = 54/186 (29%), Gaps = 14/186 (7%)

Query: 59  LANDVNAPGTAKKLENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIR---- 114
              +    G     + +   +  +  +      E      + L+  +      + +    
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328

Query: 115 -SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL----- 168
               +P+    L +     +    A  L+N++         V+ +   P   +LL     
Sbjct: 329 KEKGLPQIARLL-QSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTG 385

Query: 169 -YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS 227
             S S+D+   A + + N+    P+      S   L  ++              A   LS
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 228 NFCRGK 233
           +    K
Sbjct: 446 DMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.7 bits (241), Expect = 3e-22
 Identities = 74/526 (14%), Positives = 140/526 (26%), Gaps = 116/526 (22%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRS-GVVPRFVEFLLREDYPQL 133
           +P +   +   D  V  +      +L   E       ++RS  +V   V  +   +  + 
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 134 QFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC 193
               A  L N++    E    +   G +P  VK+L SP D V   A+  L N+       
Sbjct: 77  ARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 194 RDLVLSQGGLVPLLAQ------------------------------------------LN 211
           +  V   GGL  ++A                                           + 
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271
                 +L   +  L          P    +  + AL   +      ++ +  W L  LS
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 272 DGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPC 331
           D    +       G+   L + L     +V+  A   + N+   +      V +   +  
Sbjct: 256 DAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 332 LLNLL-SGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSII--------------- 375
           L+  +     ++ I + A   + ++T+ ++E       V     +               
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372

Query: 376 -------------------AVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT--- 413
                               + E   I  LV LL  A  D ++  +   +          
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432

Query: 414 -----------------HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGE 456
                                  +     I     LL  P   I  V    L  + +  E
Sbjct: 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492

Query: 457 AEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLE 502
           A             + I+       +  L    N  +   +  +L 
Sbjct: 493 A------------AEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (231), Expect = 6e-21
 Identities = 50/294 (17%), Positives = 96/294 (32%), Gaps = 16/294 (5%)

Query: 159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM 218
            A+P   KLL      V  +A   +  ++        ++ S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 219 LRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI 278
            R    TL N    +        S  +PAL  ++ S  D VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 279 QAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG 338
            AV  AG   ++   L   +   L      +  +  G+      ++       L+N++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 339 NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIK 398
              + +       +              + V + +  A++EA  +  L   L +    + 
Sbjct: 197 YTYEKLLWTTSRVLKV------------LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 244

Query: 399 KEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL 452
           +   W + N     +    K   ++G +  L  LL   D  +VT     L N+ 
Sbjct: 245 QNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (193), Expect = 3e-16
 Identities = 67/389 (17%), Positives = 124/389 (31%), Gaps = 17/389 (4%)

Query: 75  LPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQ 134
           L  MVA +   +       T   + L +         ++ SG     V  +    Y +L 
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203

Query: 135 FEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR 194
                 +  + S  S +   +++ G +      L  PS  + +  +W L N++  + +  
Sbjct: 204 -WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 262

Query: 195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS 254
            +    G LV LL   +           +    N  + K          AL         
Sbjct: 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322

Query: 255 NDD--EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI 312
            +D  E    A   L+           AV      P + + L  PS   LI A   +   
Sbjct: 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382

Query: 313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI------ 366
           +         + E  A+P L+ LL   ++ + ++ +               +++      
Sbjct: 383 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442

Query: 367 ---MHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISN-ATSGGTHEQIKFLVI 422
              +     + I +   N I   V LL +   +I++ AA  +   A      E I     
Sbjct: 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI---EA 499

Query: 423 QGCIKPLCDLLVCPDPRIVTVCLEGLENI 451
           +G   PL +LL   +  + T     L  +
Sbjct: 500 EGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (158), Expect = 6e-12
 Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 25/180 (13%)

Query: 114 RSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSD 173
               +P  V+ L    +  L       + N+A   + H  +  + GA+P  V+LL     
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQ 411

Query: 174 DVR----------------------EQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLN 211
           D +                      E    AL  +A D    R ++      +PL  QL 
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLNT-IPLFVQLL 469

Query: 212 GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLS 271
             P  ++ R A   L    + K      +   A   L  L+HS ++ V T A   L  +S
Sbjct: 470 YSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 6e-11
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
             +     +P FV+ LL      +Q  AA  L  +A    E  + +   GA     +LL+
Sbjct: 454 IVIRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLH 511

Query: 170 SPSDDVREQAVWALGNIA 187
           S ++ V   A   L  ++
Sbjct: 512 SRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 8e-20
 Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 7/259 (2%)

Query: 103 IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVP 162
           +E+      V+   + P   E     D  Q +  A   L ++              G   
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCENMDNAADFCQLSGMHL 62

Query: 163 IFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNA 222
           +  + L + +  +R +A   +G  + +    ++ VL  G L  LL  L+     ++   A
Sbjct: 63  LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKA 122

Query: 223 TWTLSNFCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
            + +S   R +               L   +     ++   + + L  L  G  +    +
Sbjct: 123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 182

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE-----YQALPCLLNLL 336
              G+  +L   +           L  + ++VT      +   E      + L     LL
Sbjct: 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 242

Query: 337 SGNYKKSIKKEACWTVSNI 355
             + +   + E C  +   
Sbjct: 243 QQHEEYQEELEFCEKLLQT 261

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 6e-10
 Identities = 48/287 (16%), Positives = 84/287 (29%), Gaps = 29/287 (10%)

Query: 75  LPVMVAGVWSNDSG--VQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQ 132
           L  ++ G+   +    V+   T      L   ++   +E  R  ++    E     D  +
Sbjct: 173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TR 231

Query: 133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPR 192
           ++  A   L  I S   ++ +  +      I ++ + S  D+V  Q +    N+  +   
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291

Query: 193 C---RDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQ-------------- 235
                     QG      ++   +  L  L                              
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 236 ------PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPR 289
                    D V   LP +   I + D      A  A   + +G        +     P 
Sbjct: 352 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 411

Query: 290 LAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL 336
           L E +  PS  V   A  TVG I    ++  +  I    L  LL  L
Sbjct: 412 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCL 455

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 7e-10
 Identities = 54/394 (13%), Positives = 120/394 (30%), Gaps = 33/394 (8%)

Query: 131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS 190
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 191 PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQ--VSPALPAL 248
            + ++  +    +V  L       K  +   ++  L       P         +     +
Sbjct: 74  SKVKEYQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKI 131

Query: 249 AHLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLI 303
              + S      D  V  +A   ++ +       +     + +   L   L  P  +V  
Sbjct: 132 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRK 190

Query: 304 PALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI 363
             +  +G++V          ++   +  LL+ LS N   S  +     ++ I+     +I
Sbjct: 191 RTIIALGHLVMS--CGNIVFVDL--IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

Query: 364 QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFL--V 421
              +              II  +V      + ++++    A  +       E    +  +
Sbjct: 247 GEYLE------------KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTI 294

Query: 422 IQGCIKPLCD--LLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGL 479
           I  C+K L         D       ++          ++    + D   +      A+ L
Sbjct: 295 INICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL 354

Query: 480 EKIESLQTHDNAEIYEKSVKLLETYWLDDEDETM 513
           + + S +     E Y+     L + + + E+   
Sbjct: 355 DAVVSTRHEMLPEFYKTVSPALISRFKEREENVK 388

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 34/248 (13%), Positives = 80/248 (32%), Gaps = 25/248 (10%)

Query: 109  IEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLL 168
              +   + V     +         ++  A  +L  +      H  +        + ++  
Sbjct: 807  CPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH----HIDLSGQLELKSVILEAF 862

Query: 169  YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSM-LRNATWTLS 227
             SPS++V+  A +ALG+I+  +            L  +L ++  QPK    L ++   + 
Sbjct: 863  SSPSEEVKSAASYALGSISVGNL--------PEYLPFVLQEITSQPKRQYLLLHSLKEII 914

Query: 228  NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVF 287
            +        P+  V      L       ++         L         K+  +    + 
Sbjct: 915  SSASVVGLKPY--VENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLL 964

Query: 288  PRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKE 347
            PRL  +L+  S       +  V   ++        +++   +   L  L      ++++ 
Sbjct: 965  PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDP-DLNVRRV 1022

Query: 348  ACWTVSNI 355
            A  T ++ 
Sbjct: 1023 ALVTFNSA 1030

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 9e-06
 Identities = 25/137 (18%), Positives = 41/137 (29%), Gaps = 10/137 (7%)

Query: 125  LLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALG 184
                     +   A  L  +     E          +P     L S S   R   V A+ 
Sbjct: 936  HCECAEEGTRNVVAECLGKLTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVK 987

Query: 185  NIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPA 244
                D P+  D +L     +    +    P L++ R A  T ++    KP    D +   
Sbjct: 988  FTISDHPQPIDPLLKN--CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045

Query: 245  LPALAHLIHSNDDEVLT 261
            LP L +      + +  
Sbjct: 1046 LPHLYNETKVRKELIRE 1062

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 51/320 (15%), Positives = 96/320 (30%), Gaps = 20/320 (6%)

Query: 84  SNDSGVQYECTTQFRKLLS---IERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWA 140
           S D   +       +  +          + + I+S  +       + +  P ++      
Sbjct: 57  SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN-----NIGDSSPLIRATVGIL 111

Query: 141 LTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ 200
           +T IAS      ++      +P    LL S   +  E A  AL  I  DS    D  +  
Sbjct: 112 ITTIAS----KGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD 167

Query: 201 GG---LVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDD 257
                ++P   Q        +  +A   ++ F   + Q     +      L  L    + 
Sbjct: 168 RPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEP 227

Query: 258 EVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD 317
           EV  + C AL  L +   D++   +   +   + +       +V   AL      +T  +
Sbjct: 228 EVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAE 283

Query: 318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ-IQVIMHVHAFSIIA 376
                 +  + LP L+ +L    K S                     Q I      S   
Sbjct: 284 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTV 343

Query: 377 VIEANIIGPLVALLENAEFD 396
             + +  G      ++ E D
Sbjct: 344 AQQHDEDGIEEEDDDDDEID 363

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 41/378 (10%), Positives = 105/378 (27%), Gaps = 14/378 (3%)

Query: 111 EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGA--VPIFVKLL 168
            V R  ++P  +  L    +          +  + +      + +I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 169 YSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN 228
                 VR    W L   A            +  +  LL ++    K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 229 FCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVF 287
                       ++  L  L         + L     A+  L+D     + +      + 
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLM 564

Query: 288 PRLAEFL--MHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIK 345
           P L +    +      L P L  + ++ T          E     C+  +     +  + 
Sbjct: 565 PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 624

Query: 346 KEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEA-----NIIGPLVALLENAEFDIKKE 400
                               ++   A  +   IE      NI+  +   +++   ++++ 
Sbjct: 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQS 684

Query: 401 AAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI-LKVGEAEK 459
           +   + + T          +     +  L   L      +       +  I +++G   +
Sbjct: 685 SFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ 742

Query: 460 NLGNTDVNVFTQMIDDAE 477
                 ++   ++I+   
Sbjct: 743 PYIPMVLHQLVEIINRPN 760

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 16/180 (8%)

Query: 92  ECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH 151
                    L+      IE+++    +   +   +++  P+++  +   L ++     +H
Sbjct: 640 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 699

Query: 152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIA---GD--SPRCRDLVLSQGGLVPL 206
            K  I    +PI    L      V   A WA+G I+   G    P    ++     LV +
Sbjct: 700 VKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL---HQLVEI 755

Query: 207 LAQLNGQPKLSMLRNATWTLSNFCRGKPQ---PPFDQVSPALPALAHLIHSNDDEVLTDA 263
           +         ++L N   T+       PQ   P   Q          L +  D+E    A
Sbjct: 756 IN--RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDNEEKDSA 811

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 26/279 (9%), Positives = 62/279 (22%), Gaps = 39/279 (13%)

Query: 95  TQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV 154
           ++   L +  +    +E+ R          LL +     +  +A  L             
Sbjct: 7   SKEYGLYNQCKKLNDDELFR----------LLDDHNSLKRISSARVLQLRG--------- 47

Query: 155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQP 214
                AV + ++     +   R+   + LG I                   L        
Sbjct: 48  --GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE------DNVFNILNNMALNDK 99

Query: 215 KLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACW-------AL 267
              +   A  + +  C+  P      V  +         +                   L
Sbjct: 100 SACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPL 159

Query: 268 SYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQ 327
                   +       A                 +         +     +      + +
Sbjct: 160 LINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR 219

Query: 328 ALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVI 366
            L  L + L    K ++  +       +  G++  + V+
Sbjct: 220 VLSVLCDELK---KNTVYDDIIEAAGEL--GDKTLLPVL 253

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 13/149 (8%)

Query: 125 LLREDYPQLQFEAAWALTNIAS--GTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWA 182
            L +    ++  A   L  +    G       +I     P  + +   P+   R   ++ 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHATII-----PKVLAMSGDPNYLHRMTTLFC 503

Query: 183 LGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVS 242
           +  ++    +  D+      ++P + ++ G P  ++  N   +L                
Sbjct: 504 INVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE- 558

Query: 243 PALPALAHLIHSNDDEVLTDACWALSYLS 271
              P L  L    D +V   A  AL+ LS
Sbjct: 559 -VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 12/176 (6%)

Query: 162 PIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRN 221
           P  V+L       VR   +  +  +AG              L  L          ++   
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREA 460

Query: 222 ATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 281
           AT  L        +         +P +  +    +        + ++ LS+     I   
Sbjct: 461 ATSNLKKLVEKFGKEWAHAT--IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--- 515

Query: 282 IEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLS 337
               + P +      P  +V     +++  I     +     ++ +  P L  L  
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG---PILDNSTLQSEVKPILEKLTQ 568

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 12/194 (6%)

Query: 119 PRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQ 178
              +  L  +   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 179 AVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPF 238
           A   L  +     +      +   ++P +  ++G P         + ++       Q   
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 239 DQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPS 298
            +    LP +  +       V  +   +L  +    ++     +++ V P L +      
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 299 PSVLIPALRTVGNI 312
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 110 EEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY 169
           +++    ++P  +  +  +    ++F  A +L  I       T   +     PI  KL  
Sbjct: 513 QDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQ 568

Query: 170 SPSDDVREQAVWALGNIA 187
               DV+  A  AL  ++
Sbjct: 569 DQDVDVKYFAQEALTVLS 586

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	541
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.72
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.65
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.65
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.5
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.46
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.4
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.38
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.31
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.26
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.25
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.19
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.08
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.05
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.04
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.04
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.96
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.56
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.5
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.24
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.16
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.05
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.67
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.44
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.12
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.04
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.46
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.92
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	94.68
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.61
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	92.51
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	83.0

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-62  Score=505.74  Aligned_cols=490  Identities=54%  Similarity=0.828  Sum_probs=427.0

Q ss_pred             CchHhhhhcCC-C-CCchHHhhhhhhHHHHHHHHhhHHHHHhhhhccccCCCCCccC-------CCCCchhhhcCCHHHH
Q 009184            8 KADSRRNKYKV-A-VDADEGRRRREDNMVEIRKNKREESLQKKRREGLQNQQPLAND-------VNAPGTAKKLENLPVM   78 (541)
Q Consensus         8 ~~~~~~~~~k~-~-~~~~~~r~~r~~~~~~lRk~~r~~~l~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l   78 (541)
                      .+++|++.||+ | ++++|+||||+++.++|||+||++.++|||+.....+...+..       .......+..+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   81 (503)
T d1wa5b_           2 VPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM   81 (503)
T ss_dssp             CCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHH
T ss_pred             CchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHH
Confidence            47899999998 5 5999999999999999999999999999997543222111000       0111122334689999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhC
Q 009184           79 VAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDH  158 (541)
Q Consensus        79 ~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~  158 (541)
                      +..+.++++..+..|+..++++++...+++++.+++.|++|.|+++++.+.++.++..|+|+|++++.+++..+..+.+.
T Consensus        82 ~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~  161 (503)
T d1wa5b_          82 TQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA  161 (503)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999999887788999999999999999999977658899999999999999999999999999


Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC-CCCC
Q 009184          159 GAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK-PQPP  237 (541)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~  237 (541)
                      |+++.++.+|.+++.++++.|+|+|+||+.+.+.+|+.+.+.|++++++.++ .+.+..+++.++|++++++... +...
T Consensus       162 g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~  240 (503)
T d1wa5b_         162 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPD  240 (503)
T ss_dssp             TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhcCCccchH
Confidence            9999999999999999999999999999999999999999999999999999 6677889999999999999876 5566


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc
Q 009184          238 FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD  317 (541)
Q Consensus       238 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~  317 (541)
                      .....+++|.++.++.+.|++++..++|++.+++....+....+++.|+++.++.++.++++.++.+++.++++++.+.+
T Consensus       241 ~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~  320 (503)
T d1wa5b_         241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND  320 (503)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH
Confidence            67778999999999999999999999999999999888888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhH
Q 009184          318 MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDI  397 (541)
Q Consensus       318 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v  397 (541)
                      .....+++.|+++.|..++.++ ++.++++++|+|+|++.+++....           .+++.|+++.++..+.++++++
T Consensus       321 ~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~-----------~i~~~~~l~~li~~l~~~~~~v  388 (503)
T d1wa5b_         321 LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ-----------AVIDANLIPPLVKLLEVAEYKT  388 (503)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH-----------HHHHTTCHHHHHHHHHHSCHHH
T ss_pred             HHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHH-----------HHHHccccchhHHhcccCChhH
Confidence            8888899999999999999998 999999999999999999999988           8999999999999999999999


Q ss_pred             HHHHHHHHHHhccCC--CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhh
Q 009184          398 KKEAAWAISNATSGG--THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDD  475 (541)
Q Consensus       398 ~~~a~~aL~nl~~~~--~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~  475 (541)
                      +.+|+|+|+|++..+  .++.+.++++.|+++.|+++|+..|++++..++++|.+|+..++......+...+++...|++
T Consensus       389 ~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee  468 (503)
T d1wa5b_         389 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK  468 (503)
T ss_dssp             HHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHH
Confidence            999999999998754  357788999999999999999999999999999999999988776443322346789999999


Q ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCC
Q 009184          476 AEGLEKIESLQTHDNAEIYEKSVKLLETYWLDDED  510 (541)
Q Consensus       476 ~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~~~~~  510 (541)
                      +||+++|+.|++|++++|+++|.+||++||++|+|
T Consensus       469 ~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         469 AGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             TTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            99999999999999999999999999999987664

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-47  Score=386.62  Aligned_cols=417  Identities=50%  Similarity=0.828  Sum_probs=385.2

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      ..++.+++.+.|++++.+..|+..++++++...+++++.+++.|++|.|+++|+++++++++..|+++|.+++.++++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            57899999999999999999999999999877677889999999999999999876658999999999999999889999


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCCh----hhHHHHHHHHHHh
Q 009184          153 KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPK----LSMLRNATWTLSN  228 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~----~~~~~~a~~~L~~  228 (541)
                      ..+++.|+++.|+.+|.+++.++++.|+|+|+|++.+.+.++..+.+.|+++.++.++.....    ....+.++|++++
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999954332    3456788999999


Q ss_pred             hhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHH
Q 009184          229 FCRGK-PQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALR  307 (541)
Q Consensus       229 l~~~~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~  307 (541)
                      ++... +........+++|.+..++.+++++++..++|++++++..+......+...|+++.++.++.++++.++..+++
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence            99887 44555667889999999999999999999999999999888888787888899999999999999999999999


Q ss_pred             HHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          308 TVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       308 ~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      +|++++.+++.....+++.|+++.+..++.+. ++.++..|+|+|+|++....+...           .+.+.|+++.++
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~-----------~i~~~~~i~~li  320 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQ-----------QVVNHGLVPFLV  320 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHH-----------HHHHTTCHHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHH-----------HHhhhhhHHHHH
Confidence            99999998888888899999999999999998 999999999999999998888888           888999999999


Q ss_pred             HHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcc
Q 009184          388 ALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVN  467 (541)
Q Consensus       388 ~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  467 (541)
                      .++.+++++++..|+|+|.|++..++.+....+.+.|+++.|+++++++|++++..++++|.+|++.++...     ..+
T Consensus       321 ~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~-----~~~  395 (434)
T d1q1sc_         321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-----ETE  395 (434)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT-----CHH
T ss_pred             HHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC-----CcH
Confidence            999999999999999999999998888999999999999999999999999999999999999999887543     356


Q ss_pred             hhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          468 VFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       468 ~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                      .++..+++.||++.|+.|++|+|++|++.|.+||++||+
T Consensus       396 ~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         396 KLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            789999999999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3e-32  Score=281.43  Aligned_cols=366  Identities=24%  Similarity=0.339  Sum_probs=319.2

Q ss_pred             cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        72 ~~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      .+.+|.++..+++ .++.++..|+++|.++++.. ......+.+.|+++.++.+|.+++ .+++..|+|+|+||+..+++
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~~~  195 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTD  195 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhhHH
Confidence            3689999999986 56789999999999998764 455667889999999999999988 99999999999999998899


Q ss_pred             HHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          151 HTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      .+..+.+.|+++.|+.++.+.+..++..++|+|.|++.......+.....++++.++.++ .+.+.+++..++|++.+++
T Consensus       196 ~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~  274 (503)
T d1wa5b_         196 YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLS  274 (503)
T ss_dssp             HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999976554444445567899999988 7788999999999999999


Q ss_pred             cCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 009184          231 RGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV  309 (541)
Q Consensus       231 ~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L  309 (541)
                      ...+. .......++++.++.++.+++..+...+++++++++.+.+.....+.+.|+++.+..++.++++.++..++++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l  354 (503)
T d1wa5b_         275 DGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI  354 (503)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence            87532 23344578999999999999999999999999999998888888889999999999999999999999999999


Q ss_pred             hHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC---ChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG---NREQIQVIMHVHAFSIIAVIEANIIGPL  386 (541)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~~~~~~l~~~~~l~~L  386 (541)
                      +|++.+++.....+++.|+++.++.++.+. +..++.+|+|+|+|++.+   .++.+.           .+++.|+++.|
T Consensus       355 ~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~-----------~l~~~~~l~~l  422 (503)
T d1wa5b_         355 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIR-----------YLVSQGCIKPL  422 (503)
T ss_dssp             HHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHH-----------HHHHTTCHHHH
T ss_pred             HHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHH-----------HHHHCCcHHHH
Confidence            999999988888899999999999999998 899999999999999973   345677           88899999999


Q ss_pred             HHHhhcCchhHHHHHHHHHHHhccCCC----------HHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184          387 VALLENAEFDIKKEAAWAISNATSGGT----------HEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  452 (541)
Q Consensus       387 ~~~l~~~~~~v~~~a~~aL~nl~~~~~----------~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~  452 (541)
                      +.+|...+.++...++.+|.++...+.          ......+.+.|+++.|..+..+++.++...|...|...+
T Consensus       423 ~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f  498 (503)
T d1wa5b_         423 CDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF  498 (503)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            999999999999999999999874321          133445667899999988888899999888888776655

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-31  Score=269.55  Aligned_cols=365  Identities=25%  Similarity=0.373  Sum_probs=315.8

Q ss_pred             cCCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChh
Q 009184           72 LENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSE  150 (541)
Q Consensus        72 ~~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~  150 (541)
                      .+.+|.+++.|++ ++++++..|+++|.++++.. ......+++.|++|.|+.+|.+++ +.++..|+++|++++.++++
T Consensus        55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~~~~  132 (434)
T d1q1sc_          55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSA  132 (434)
T ss_dssp             TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhccchH
Confidence            4689999999975 56789999999999998653 456778889999999999999988 99999999999999998899


Q ss_pred             HHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q 009184          151 HTKVVIDHGAVPIFVKLLYSPS-----DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWT  225 (541)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~  225 (541)
                      .+..+.+.|+++.|+.++...+     ......++|++.+++.............++++.+..++ .+.+++++..++|+
T Consensus       133 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a~~~  211 (434)
T d1q1sc_         133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWA  211 (434)
T ss_dssp             HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhHHhh
Confidence            9999999999999999997643     45667789999999987655544445556788888888 77889999999999


Q ss_pred             HHhhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHH
Q 009184          226 LSNFCRGKPQ-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIP  304 (541)
Q Consensus       226 L~~l~~~~~~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~  304 (541)
                      +.+++...+. .......+++|.++.++.+++.+++..+++++.+++..++.....+++.|+++.++.++.++++.++..
T Consensus       212 l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  291 (434)
T d1q1sc_         212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  291 (434)
T ss_dssp             HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             hcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHH
Confidence            9999987532 223344789999999999999999999999999999888887888899999999999999999999999


Q ss_pred             HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc-CChHHHHHHHhhchhhHHHHHhcCcH
Q 009184          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA-GNREQIQVIMHVHAFSIIAVIEANII  383 (541)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~~~~~~~~l~~~~~l  383 (541)
                      ++++|++++.........+.+.|+++.++.++.+. ++.++..|+|+|+|++. ++.+.+.           .+.+.|++
T Consensus       292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~-----------~l~~~~~i  359 (434)
T d1q1sc_         292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIV-----------YLVHCGII  359 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHH-----------HHHHTTCH
T ss_pred             HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHH-----------HHHHCCcH
Confidence            99999999998888888889999999999999998 89999999999999998 5677777           88899999


Q ss_pred             HHHHHHhhcCchhHHHHHHHHHHHhccC----CCH-HHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHH
Q 009184          384 GPLVALLENAEFDIKKEAAWAISNATSG----GTH-EQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENI  451 (541)
Q Consensus       384 ~~L~~~l~~~~~~v~~~a~~aL~nl~~~----~~~-~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l  451 (541)
                      +.|+.++.+.+++++..++++|.++...    +.. .....+.+.|+++.|-.+.++++++++..+.++|.+.
T Consensus       360 ~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         360 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998742    233 3445556789999998888999999999998888664

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-30  Score=266.22  Aligned_cols=400  Identities=18%  Similarity=0.202  Sum_probs=341.4

Q ss_pred             CCHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           73 ENLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        73 ~~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +++|.++..|.++++.++..|+++|.+++... ......+.+.|++|.|+.+|++++ +.++..++++|.+++..+++.+
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~  178 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESK  178 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHHH
Confidence            67999999999999999999999999998763 444566779999999999999988 9999999999999999888999


Q ss_pred             HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          153 KVVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      ..+...|+++.|+.++.+ +...++..+++++.+++.+. ..+..+.+.|++++++.++ .+.+..++..+++++.+++.
T Consensus       179 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls~  256 (529)
T d1jdha_         179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSD  256 (529)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhccc
Confidence            999999999999999965 56789999999999998754 4788889999999999999 77888999999999999986


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC--CCChhhHHHHHHHH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTV  309 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~L  309 (541)
                      ....  .....++++.|+.++.+++..++..++++|.+++..++.....+.+.++++.++..+.  .+.+.++..++.+|
T Consensus       257 ~~~~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         257 AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             TCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccc--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            5432  2334788999999999999999999999999999888888888899999999999883  45678899999999


Q ss_pred             hHhhcCCch---hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHH
Q 009184          310 GNIVTGDDM---QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPL  386 (541)
Q Consensus       310 ~nl~~~~~~---~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L  386 (541)
                      ++++.....   ....+...++++.++.++..+.+..++..+++++.|++.. +....           .+.+.|+++.|
T Consensus       335 ~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~-----------~l~~~g~i~~L  402 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHA-----------PLREQGAIPRL  402 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHH-----------HHHHTTHHHHH
T ss_pred             hcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhh-----------hhhhcccHHHH
Confidence            999976542   3345667899999999998875667889999999999875 45555           78899999999


Q ss_pred             HHHhhcCch----------------------hHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHH
Q 009184          387 VALLENAEF----------------------DIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVC  444 (541)
Q Consensus       387 ~~~l~~~~~----------------------~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~  444 (541)
                      ++++.+.+.                      ++...++.++.+++.  .+.....+.+.|+++.|+++|.++++.++..+
T Consensus       403 ~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a  480 (529)
T d1jdha_         403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVA  480 (529)
T ss_dssp             HHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHH
Confidence            999975433                      456667778888875  55666777789999999999999999999999


Q ss_pred             HHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184          445 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  504 (541)
Q Consensus       445 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~  504 (541)
                      +.+|.++....+            .+..+.+.|++..|.+|.+++|++++..|...|.+.
T Consensus       481 ~~aL~~L~~~~~------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         481 AGVLCELAQDKE------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHTTSHH------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcChh------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999864322            256788899999999999999999999999988653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=263.94  Aligned_cols=403  Identities=17%  Similarity=0.166  Sum_probs=337.6

Q ss_pred             CCHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhH
Q 009184           73 ENLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEH  151 (541)
Q Consensus        73 ~~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~  151 (541)
                      +.++.++..|.+ ++++.+..|+.+|..+...  .+....+++.|++|.|+.+|++++ ++++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            357889998874 6789999999999998643  566778889999999999999988 999999999999999988888


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          152 TKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      +..+.+.|+++.|+.+|++++++++..++++|.+++..++..+..+...|++++++.++.......++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88899999999999999999999999999999999988888889999999999999999777778899999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      ...........++++.|..++.+++.++...+++++.+++......   ....|+++.|+.++.+++..++..|+++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            7655555566889999999999999999999999999998654422   2224789999999999999999999999999


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCChH---HHHHHHhhchhhHHHHHhcCcHHHHH
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNRE---QIQVIMHVHAFSIIAVIEANIIGPLV  387 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~~~~~~~~l~~~~~l~~L~  387 (541)
                      ++.+++.....+.+.++++.++.++.. ...+.++..|+++|.|++.....   ...           .+...+.++.|+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-----------~i~~~~~l~~L~  361 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN-----------AVRLHYGLPVVV  361 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH-----------HHHHTTCHHHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhh-----------hHHhcccchhHH
Confidence            999888888888899999999998853 22678899999999999974332   233           556789999999


Q ss_pred             HHhhcCc-hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCCh----------------------HHHHHH
Q 009184          388 ALLENAE-FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDP----------------------RIVTVC  444 (541)
Q Consensus       388 ~~l~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~----------------------~~~~~~  444 (541)
                      .++..++ ..++..+++++.|++..  ++....+.+.|+++.|+++|.+.+.                      +++..+
T Consensus       362 ~ll~~~~~~~~~~~~~~~l~~l~~~--~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (529)
T d1jdha_         362 KLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC  439 (529)
T ss_dssp             HTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHhhcchh--hhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHH
Confidence            9998754 57888999999999874  3556778899999999999865433                      445555


Q ss_pred             HHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          445 LEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       445 l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                      ..++..+.....            -+..+.+.|+++.|..+..+++++++..|...+..+..
T Consensus       440 ~~al~~la~~~~------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  489 (529)
T d1jdha_         440 TGALHILARDVH------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             HHHHHHHTTSHH------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCHH------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            566655543221            14567779999999999999999999999999887754

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.8e-26  Score=231.22  Aligned_cols=372  Identities=18%  Similarity=0.205  Sum_probs=280.5

Q ss_pred             CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 009184          116 GVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRD  195 (541)
Q Consensus       116 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (541)
                      ..+|.|+++|++++ ++++..|+++|++++.++++.+..+.+.|+||.|+++|++++++++..|+++|+|++.+.++.+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhh----------------ccCChhH
Q 009184          196 LVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLI----------------HSNDDEV  259 (541)
Q Consensus       196 ~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL----------------~~~d~~v  259 (541)
                      .+.+.|+++.++.++....+..++..+++++.+++........ .....++.+...+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE-LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHH-HHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHH-HHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            9999999999999997778899999999999999987543322 2233344433332                3457889


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCC------ChhhHHHHHHHHhHhh--------------------
Q 009184          260 LTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHP------SPSVLIPALRTVGNIV--------------------  313 (541)
Q Consensus       260 ~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~------~~~v~~~al~~L~nl~--------------------  313 (541)
                      +..+++++..++...+.....+...|+++.++.++.+.      .......+...+.+..                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999877666555555668888888887431      1111111111111100                    


Q ss_pred             ------------------------------cCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHH
Q 009184          314 ------------------------------TGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQI  363 (541)
Q Consensus       314 ------------------------------~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  363 (541)
                                                    .........+...++++.++.++....++.++..+++++.+++.......
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          01111112233456678888888766578889999999999987433211


Q ss_pred             HHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC------C
Q 009184          364 QVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP------D  437 (541)
Q Consensus       364 ~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~------~  437 (541)
                      .      ......+.+.|+++.|+.++.+++++++..+++++.+++..  ++....+ ..++++.|+.+|...      +
T Consensus       320 ~------~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i-~~~~i~~li~~L~~~~~~~~~~  390 (457)
T d1xm9a1         320 S------GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVM-GNQVFPEVTRLLTSHTGNTSNS  390 (457)
T ss_dssp             H------HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHH-HHHTHHHHHHTTTSCCSCSTTH
T ss_pred             H------HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHH-HHhhHHHHHHHHhccccCcCCc
Confidence            1      00000455789999999999999999999999999999874  3333443 456789999988542      3


Q ss_pred             hHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCCC
Q 009184          438 PRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQ-THDNAEIYEKSVKLLETYWLDDE  509 (541)
Q Consensus       438 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~-~~~~~~i~~~a~~il~~~~~~~~  509 (541)
                      .+++..++.+|.++....+.           .+..+.+.||++.|..+. .++++.++..|..+|.++|...+
T Consensus       391 ~~v~~~a~~~L~~l~~~~~~-----------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~  452 (457)
T d1xm9a1         391 EDILSSACYTVRNLMASQPQ-----------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCTH-----------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHHHHHhcCCHH-----------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence            46888999999999865433           356777899999999986 55789999999999999987544

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-23  Score=210.24  Aligned_cols=361  Identities=15%  Similarity=0.166  Sum_probs=268.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .+|.+++.|++++++++..|+.+|.+++... .+....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++.+.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            5899999999999999999999999997553 666788889999999999999988 99999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhh---------------cCCChhh
Q 009184          154 VVIDHGAVPIFVKLLYS-PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQL---------------NGQPKLS  217 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l---------------~~~~~~~  217 (541)
                      .+.+.|+++.|+.++.+ .++.++..++++|++++.... .+......| ++.++..+               ....+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHH-HHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999998865 788999999999999998765 344444433 34444333               1345778


Q ss_pred             HHHHHHHHHHhhhcCCCCCChh-hhhchHHHHHHhhccC------ChhHHHHHHHHHHHhcc------------------
Q 009184          218 MLRNATWTLSNFCRGKPQPPFD-QVSPALPALAHLIHSN------DDEVLTDACWALSYLSD------------------  272 (541)
Q Consensus       218 ~~~~a~~~L~~l~~~~~~~~~~-~~~~~l~~L~~lL~~~------d~~v~~~a~~~L~~l~~------------------  272 (541)
                      ++..+++++.+++......... ...++++.++.++.+.      .......+...+.....                  
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            9999999999998775332222 2356778887777532      11112222222211110                  


Q ss_pred             --------------------------------CChHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCCch-
Q 009184          273 --------------------------------GTNDKIQAVIEAGVFPRLAEFLMH-PSPSVLIPALRTVGNIVTGDDM-  318 (541)
Q Consensus       273 --------------------------------~~~~~~~~~~~~g~l~~L~~lL~~-~~~~v~~~al~~L~nl~~~~~~-  318 (541)
                                                      ........+...++++.++.++.. .++.++..+++++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                            000001112233456667666643 4677888899999999875542 


Q ss_pred             ----hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC-
Q 009184          319 ----QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA-  393 (541)
Q Consensus       319 ----~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~-  393 (541)
                          ....+...++++.|+.++.+. ++.++..++++++|++.. +...            ..+..++++.++.++... 
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~------------~~i~~~~i~~li~~L~~~~  384 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLH------------RVMGNQVFPEVTRLLTSHT  384 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGH------------HHHHHHTHHHHHHTTTSCC
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHH------------HHHHHhhHHHHHHHHhccc
Confidence                233445789999999999998 999999999999999875 3333            334457889999988642 


Q ss_pred             -----chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHH
Q 009184          394 -----EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILK  453 (541)
Q Consensus       394 -----~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~  453 (541)
                           +.+++..|+.+|.|++.. +++..+.+.+.|+++.|+.++.+. ++.++..+..+|.+|..
T Consensus       385 ~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~  449 (457)
T d1xm9a1         385 GNTSNSEDILSSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             SCSTTHHHHHHHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             cCcCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence                 357999999999999975 567778888999999999998765 57889999999998853

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=9.1e-19  Score=163.32  Aligned_cols=194  Identities=14%  Similarity=0.137  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHh
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK-LLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQ  209 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~  209 (541)
                      .+.+..|+.+|.+++. +.++...+...|+++.++. ++.+++++++..|+++|++++.+++.++..+.+.|+++.|+.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            7889999999999997 5778888889999998885 7888999999999999999999999899999999999999999


Q ss_pred             hcCCChhhHHHHHHHHHHhhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHH
Q 009184          210 LNGQPKLSMLRNATWTLSNFCRGKP-QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFP  288 (541)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~  288 (541)
                      +....++.++..++++|++++++.+ ........++++.|++++.+++..++..++++|.+++..+++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9777788999999999999998874 333445688999999999999999999999999999988888888899999999


Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHh
Q 009184          289 RLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIE  325 (541)
Q Consensus       289 ~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~  325 (541)
                      .|+.+|.++++.++..|+++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999888776655554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.3e-18  Score=158.67  Aligned_cols=230  Identities=17%  Similarity=0.163  Sum_probs=188.0

Q ss_pred             cCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHH
Q 009184          254 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAE-FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (541)
Q Consensus       254 ~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (541)
                      ..+.+.+..|+.+|.+++.. .+....+...|+++.++. ++.++++.++..|+++|++++.+++.....+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            45677889999999999965 445566888899998875 7788999999999999999999888887788899999999


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC
Q 009184          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG  412 (541)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~  412 (541)
                      +.++.+..++.++..++|+|++++.+++....           .+...|+++.|+.++.+++.+++..++++|.+++.. 
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~-----------~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-  174 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLL-----------QFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-  174 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH-----------HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHH-----------HHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-
Confidence            99997654889999999999999999888888           889999999999999999999999999999999875 


Q ss_pred             CHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHh-hhcchHHHHHH---H-h-
Q 009184          413 THEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI-DDAEGLEKIES---L-Q-  486 (541)
Q Consensus       413 ~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~l~~---L-~-  486 (541)
                      .++....+.+.|+++.|+.++++++++++..++++|.+|....+....          ... .+.+....+..   + . 
T Consensus       175 ~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~----------~~~~~~l~~~~~L~~~~~~~~~  244 (264)
T d1xqra1         175 HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR----------ECREPELGLEELLRHRCQLLQQ  244 (264)
T ss_dssp             CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH----------HHHCGGGCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH----------HHHHhhhhHHHHHHHHHHhccc
Confidence            556777888999999999999999999999999999999875544321          111 11222222222   2 2 


Q ss_pred             cCCCHHHHHHHHHHHHHhCC
Q 009184          487 THDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       487 ~~~~~~i~~~a~~il~~~~~  506 (541)
                      .....+..+.+..|++++|.
T Consensus       245 ~~~~~e~~~~~~~ll~~~~~  264 (264)
T d1xqra1         245 HEEYQEELEFCEKLLQTCFS  264 (264)
T ss_dssp             CGGGHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHHHhcC
Confidence            23455666888999999884

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.6e-16  Score=160.13  Aligned_cols=378  Identities=11%  Similarity=0.133  Sum_probs=263.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVV  155 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i  155 (541)
                      |.+...++++++.++..|+.++..++...  +.  ......++|.+.+++.+++ +.++..++.+|+.++.....   ..
T Consensus       206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~--~~--~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~~~~---~~  277 (588)
T d1b3ua_         206 PMFSNLASDEQDSVRLLAVEACVNIAQLL--PQ--EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP---EI  277 (588)
T ss_dssp             HHHHHHHTCSCHHHHTTHHHHHHHHHHHS--CH--HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH---HH
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHhhccC--CH--HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHHhhh---hh
Confidence            34444445555666666666665554432  11  1112336778888887776 88999998888888752111   12


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCC
Q 009184          156 IDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS-PRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKP  234 (541)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~  234 (541)
                      ....+++.+..++.+++++++..++.+++.++..- ........-...++.+...+ .+.+..++..++.++..++..-.
T Consensus       278 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~~  356 (588)
T d1b3ua_         278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG  356 (588)
T ss_dssp             HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC
T ss_pred             hhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhccc
Confidence            22356888999999999999999999999887432 22222222233566666666 77888899998888887764321


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 009184          235 QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVT  314 (541)
Q Consensus       235 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~  314 (541)
                        .......++|.+..++.+++++++..++.++..+...-..  . -....+++.+..++.+.+|.++..++.+++.++.
T Consensus       357 --~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         357 --KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             --HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence              1223466789999999999999999988888776532211  1 1123577888999999999999999999998875


Q ss_pred             CCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC
Q 009184          315 GDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA  393 (541)
Q Consensus       315 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~  393 (541)
                      .....   .+...+.+.+..++.++ ...+|..|+++|+.++.. .++.               ....+++.+..++.++
T Consensus       432 ~~~~~---~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~~---------------~~~~i~~~l~~~~~~~  492 (588)
T d1b3ua_         432 QLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKEW---------------AHATIIPKVLAMSGDP  492 (588)
T ss_dssp             HHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHHH---------------HHHHTHHHHHHTTTCS
T ss_pred             HcChH---hHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcHH---------------HHHHHHHHHHHHhcCC
Confidence            32111   12234567788888888 889999999999999862 2221               1224788999999999


Q ss_pred             chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHh
Q 009184          394 EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMI  473 (541)
Q Consensus       394 ~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i  473 (541)
                      ++.+|..++.++..+......    ......+++.|..+++++.+.++..++++|..+....+...         +.   
T Consensus       493 ~~~~R~~~~~~l~~l~~~~~~----~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---------~~---  556 (588)
T d1b3ua_         493 NYLHRMTTLFCINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---------LQ---  556 (588)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---------HH---
T ss_pred             CHHHHHHHHHHHHHHHHHcCh----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---------HH---
Confidence            999999999999988753222    22345689999999999999999999999999875443211         12   


Q ss_pred             hhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184          474 DDAEGLEKIESLQTHDNAEIYEKSVKLLETY  504 (541)
Q Consensus       474 ~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~  504 (541)
                        ......|+.|+++++.+|+..|.+.++..
T Consensus       557 --~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         557 --SEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             --HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence              22357788899999999999999988764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.6e-14  Score=148.75  Aligned_cols=381  Identities=12%  Similarity=0.089  Sum_probs=276.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .++.+.+.+.+.++.+|..++..+..++..-.    ...+...++|.+..++++++ +.++..|+.++..++...+... 
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~~-  238 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQED-  238 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHHH-
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHHH-
Confidence            35566667778889999999999999886531    12334567888899888887 8999999999999876332211 


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCC
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGK  233 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~  233 (541)
                        ....++|.+..++.+++..+|..++.+|++++....   ........++.+..++ .+.+..++..++..+..++..-
T Consensus       239 --~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         239 --LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             --HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             --HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHH
Confidence              112357889999999999999999999999874221   1122334577777777 7788999999999999999875


Q ss_pred             CCCC--hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 009184          234 PQPP--FDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGN  311 (541)
Q Consensus       234 ~~~~--~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~n  311 (541)
                      ....  ......++|.+...+.+.++.++..++.++..++..-..  . .....+++.+..++.++++.++..++.+++.
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch--h-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            3332  223467889999999999999999998888777632111  1 1123578899999999999999999988887


Q ss_pred             hhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHh
Q 009184          312 IVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALL  390 (541)
Q Consensus       312 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l  390 (541)
                      +.......   -+...+++.+..++.+. ++.+|..++.+++.++.. ..+.               ....+.+.+..++
T Consensus       390 ~~~~~~~~---~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~---------------~~~~l~~~l~~~l  450 (588)
T d1b3ua_         390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF---------------FDEKLNSLCMAWL  450 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG---------------CCHHHHHHHHHGG
T ss_pred             HHhhcchh---hhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh---------------HHHHHHHHHHhhc
Confidence            76432211   11235678888889888 999999999999998752 1211               1223567778888


Q ss_pred             hcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhh
Q 009184          391 ENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFT  470 (541)
Q Consensus       391 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~  470 (541)
                      .++...+|..|+++|+.++....++.    ....+++.+..++.+++...+..++.++..+........         +.
T Consensus       451 ~D~~~~VR~~A~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~---------~~  517 (588)
T d1b3ua_         451 VDHVYAIREAATSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---------TT  517 (588)
T ss_dssp             GCSSHHHHHHHHHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH---------HH
T ss_pred             cCCchhHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH---------HH
Confidence            88889999999999999976433332    234578899999999999999999999988876543211         11


Q ss_pred             hHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 009184          471 QMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYWL  506 (541)
Q Consensus       471 ~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~~  506 (541)
                           ...+..|..+..++.+.|+..+.+.+...+.
T Consensus       518 -----~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~  548 (588)
T d1b3ua_         518 -----KHMLPTVLRMAGDPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             -----HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred             -----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence                 2345667777788888888888777776543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.3e-12  Score=140.61  Aligned_cols=380  Identities=16%  Similarity=0.198  Sum_probs=231.7

Q ss_pred             HHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHh
Q 009184           88 GVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKL  167 (541)
Q Consensus        88 ~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  167 (541)
                      ..+..+..++..+....+......     +++.+.+.+.+++ +..|..|+.+|+.++.+..+.....+. .+++.|+..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~~-----~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLPH-----ILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHHH-----HHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHHH-----HHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHh
Confidence            356666666665554332222222     3566667777777 999999999999999876544332222 357888999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHH
Q 009184          168 LYSPSDDVREQAVWALGNIAGDSP-RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALP  246 (541)
Q Consensus       168 L~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~  246 (541)
                      +.++++.+|..++|+|+.++.... ...+... ...++.++..+ .+.++.++..++++|.+++......-......+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYL-KPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHT-TTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhh-hhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            999999999999999999874221 1112222 23677788777 67788999999999999986542222222222222


Q ss_pred             HHHHhhccCChhHH---------------------------------------------HHHHHHHHHhcc----C----
Q 009184          247 ALAHLIHSNDDEVL---------------------------------------------TDACWALSYLSD----G----  273 (541)
Q Consensus       247 ~L~~lL~~~d~~v~---------------------------------------------~~a~~~L~~l~~----~----  273 (541)
                      .+...+...+....                                             ..++.+++.++.    .    
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~  602 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPY  602 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            22222221111111                                             111111111100    0    


Q ss_pred             --------------------------------ChHH-------------------HHHHHHhCcHHHHHHhhCCCChhhH
Q 009184          274 --------------------------------TNDK-------------------IQAVIEAGVFPRLAEFLMHPSPSVL  302 (541)
Q Consensus       274 --------------------------------~~~~-------------------~~~~~~~g~l~~L~~lL~~~~~~v~  302 (541)
                                                      ..+.                   ...+....+++.+...+.+.++.++
T Consensus       603 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr  682 (888)
T d1qbkb_         603 CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVR  682 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHH
Confidence                                            0000                   0001112344555666677788899


Q ss_pred             HHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCc
Q 009184          303 IPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANI  382 (541)
Q Consensus       303 ~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~  382 (541)
                      ..|+.++|.++..........++ .+++.+...|.+. ...++..|+|+++.++....+...           ..+. .+
T Consensus       683 ~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~-----------py~~-~i  748 (888)
T d1qbkb_         683 QSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQ-----------PYIP-MV  748 (888)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGG-----------GGSH-HH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhh-----------hhHH-HH
Confidence            99999999988765544333332 4677788888777 888999999999999875444444           3332 58


Q ss_pred             HHHHHHHhhcCc--hhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC-CChHHHHHHHHHHHHHHHhhHhhh
Q 009184          383 IGPLVALLENAE--FDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC-PDPRIVTVCLEGLENILKVGEAEK  459 (541)
Q Consensus       383 l~~L~~~l~~~~--~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~~~~~~l~~L~~l~~~~~~~~  459 (541)
                      ++.|+.++..++  ..++..++.+|+.++.. .++...... ..+++.++.-+.. .|.+-...+..++..++..++..-
T Consensus       749 l~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-~p~~~~~~l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~  826 (888)
T d1qbkb_         749 LHQLVEIINRPNTPKTLLENTAITIGRLGYV-CPQEVAPML-QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV  826 (888)
T ss_dssp             HHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-CHHHHGGGG-GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-CHHHHHhhH-HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHH
Confidence            889999998753  55899999999999874 344322111 2466777776654 455556788999999998766532


Q ss_pred             hcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184          460 NLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       460 ~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~~  505 (541)
                      .      ..+..+      .+.+.. -..+.+++......+|..|-
T Consensus       827 ~------~~l~~~------~~~i~~-~~~~~~~~~~~~~~~l~~~~  859 (888)
T d1qbkb_         827 I------QDFIFF------CDAVAS-WINPKDDLRDMFCKILHGFK  859 (888)
T ss_dssp             G------GGHHHH------HHHHTT-CSSCCHHHHHHHHHHHHHHH
T ss_pred             H------HHHHHH------HHHHHh-cCCCCHHHHHHHHHHHHHHH
Confidence            1      111111      112211 13466889999888887764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.5e-11  Score=134.44  Aligned_cols=417  Identities=11%  Similarity=0.096  Sum_probs=264.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      .+..+++.+.+.|++.|+.|+..|.+.+..... ..+.-....+++.|+++|++++ +++|..|+.||+.++...++...
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~-~~~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~   81 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV   81 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhccc-ccChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH
Confidence            357888999999999999999999998865321 1111112347899999999888 99999999999999886544321


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh------hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHH
Q 009184          154 VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSP------RCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLS  227 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~  227 (541)
                          ..+++.|+..+.+++...+..+..+|..+...-+      .....+. ...++.+...+....+..++..++.++.
T Consensus        82 ----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~v~~~al~~l~  156 (1207)
T d1u6gc_          82 ----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMA  156 (1207)
T ss_dssp             ----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence                1346888888888888888888888877753221      1111111 1244555666656678889999999999


Q ss_pred             hhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHH
Q 009184          228 NFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFL-MHPSPSVLIPAL  306 (541)
Q Consensus       228 ~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~v~~~al  306 (541)
                      .+....+..-......+++.++..+.+++..++..++.+++.++......   . -..+++.++..+ .+.+...+..++
T Consensus       157 ~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~-~~~~~~~ll~~l~~~~~~~~~~~~~  232 (1207)
T d1u6gc_         157 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYI  232 (1207)
T ss_dssp             HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred             HHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHccCCCHHHHHHHH
Confidence            88876544333445678888999999999999999999999998654431   1 124566666655 445566777788


Q ss_pred             HHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHH----HHhh--------chhhH
Q 009184          307 RTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQV----IMHV--------HAFSI  374 (541)
Q Consensus       307 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~----~~~~--------~~~~~  374 (541)
                      .+++.++...+...... -..+++.+...+... ++.+|..++.++..++...+..+..    +...        .++..
T Consensus       233 ~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~  310 (1207)
T d1u6gc_         233 QCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY  310 (1207)
T ss_dssp             HHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhh
Confidence            88888876554332111 146788999999988 8999999999999988743332210    0000        00000


Q ss_pred             ------HHHH-------hcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHH
Q 009184          375 ------IAVI-------EANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV  441 (541)
Q Consensus       375 ------~~l~-------~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  441 (541)
                            ....       .....+..........+.+|..++.+|..++.... +.... .-..+++.|...+...++.++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~-~~~~~~~~L~~~l~d~~~~vr  388 (1207)
T d1u6gc_         311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPE-FYKTVSPALISRFKEREENVK  388 (1207)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHH-HHTTTHHHHHSTTSCSSSHHH
T ss_pred             hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHH-HHHHHHHHHHHHhcCCchHHH
Confidence                  0000       00011111112233457899999999999886532 22222 224688999999999999999


Q ss_pred             HHHHHHHHHHHHhhHhhhhcCC-----CCcchhhhHhhh--cchHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 009184          442 TVCLEGLENILKVGEAEKNLGN-----TDVNVFTQMIDD--AEGLEKIESLQTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       442 ~~~l~~L~~l~~~~~~~~~~~~-----~~~~~~~~~i~~--~~~~~~l~~L~~~~~~~i~~~a~~il~~~~  505 (541)
                      ..++.++..++...........     ...+.....+.+  ...++.+.....+.+..++..+..++..+.
T Consensus       389 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~  459 (1207)
T d1u6gc_         389 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV  459 (1207)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            9999998888764322110000     000000111111  224556666677888888888888777654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.5e-14  Score=156.36  Aligned_cols=356  Identities=15%  Similarity=0.180  Sum_probs=236.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHH-
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKV-  154 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~-  154 (541)
                      ..++..|.++++.++..++.++..+++.......     ..++|.|++++.+++ +..+..|+.+|..|+.+....... 
T Consensus        91 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~W-----pell~~L~~~l~s~~-~~~~~~al~~L~~i~e~~~~~~~~~  164 (888)
T d1qbkb_          91 SECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSD  164 (888)
T ss_dssp             HHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSS-----TTTSTTTTTSSTGGG-SSCSSSSSTTTHHHHGGGHHHHHTC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccch-----HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhHHHhhHH
Confidence            4455667777777777777777777764211111     357888888888776 778888889999998743322211 


Q ss_pred             HH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhc
Q 009184          155 VI---DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCR  231 (541)
Q Consensus       155 i~---~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~  231 (541)
                      ..   -..+++.+++.+.++++.++..|+.++..+....+..-..... .+++.+.... .++++.++..++.+|..+..
T Consensus       165 ~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~-~~l~~l~~~~-~~~~~~vr~~~~~~l~~l~~  242 (888)
T d1qbkb_         165 VLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID-SFTENLFALA-GDEEPEVRKNVCRALVMLLE  242 (888)
T ss_dssp             ---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHH-HCSHHHHTTS-SCCCSSSTTHHHHTTTTTSC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHhc-CCcchHHHHHHHHHHHHHHH
Confidence            11   1247899999999988889999999998887554422111112 2566666666 67788899999999998887


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCh-------------------------H----------
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTN-------------------------D----------  276 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~-------------------------~----------  276 (541)
                      ..+..-.....++++.++..+.+++++++..|+..+..++....                         +          
T Consensus       243 ~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~  322 (888)
T d1qbkb_         243 VRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEE  322 (888)
T ss_dssp             SCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSC
T ss_pred             HhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhh
Confidence            65544334455666666666777777787777765544432100                         0          


Q ss_pred             ---------------------------------------------------HH--HHHH-------HhCcH----HHHHH
Q 009184          277 ---------------------------------------------------KI--QAVI-------EAGVF----PRLAE  292 (541)
Q Consensus       277 ---------------------------------------------------~~--~~~~-------~~g~l----~~L~~  292 (541)
                                                                         +.  ...+       ...++    +.+..
T Consensus       323 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~  402 (888)
T d1qbkb_         323 DETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKE  402 (888)
T ss_dssp             CTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHH
Confidence                                                               00  0000       01233    34445


Q ss_pred             hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchh
Q 009184          293 FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAF  372 (541)
Q Consensus       293 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~  372 (541)
                      .+.+++|..|..|+.++|.++.+..+.....+ ..+++.|+..+.+. ++.+|..++|+|+.++........        
T Consensus       403 ~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~~~~~~~--------  472 (888)
T d1qbkb_         403 LLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPP--------  472 (888)
T ss_dssp             TTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHTHHHHHSSCH--------
T ss_pred             hhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCC-CHHHHHHHHHHHHHHHHHhhhhhh--------
Confidence            56788899999999999999987754432222 25678899999888 999999999999998762111111        


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHH
Q 009184          373 SIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENIL  452 (541)
Q Consensus       373 ~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~  452 (541)
                         .-.-..+++.++..+.++++.|+..|+++|.+++.........++  ..+++.|...++..+.+....+++++..+.
T Consensus       473 ---~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         473 ---DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             ---HHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             ---hhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence               112236888899999989999999999999999853322222221  235667777888777777777778887776


Q ss_pred             Hh
Q 009184          453 KV  454 (541)
Q Consensus       453 ~~  454 (541)
                      ..
T Consensus       548 ~~  549 (888)
T d1qbkb_         548 DS  549 (888)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3.5e-10  Score=104.57  Aligned_cols=256  Identities=15%  Similarity=0.137  Sum_probs=191.9

Q ss_pred             cCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 009184          115 SGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR  194 (541)
Q Consensus       115 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (541)
                      ....+.|+++|++++ +.++..|+.+|+.+..  +         .+++.|+.+++++++.++..|+++|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            445778999999988 9999999999998753  2         2479999999999999999999999998644331 1


Q ss_pred             HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 009184          195 DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGT  274 (541)
Q Consensus       195 ~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~  274 (541)
                      +.     .++.++..+.+++++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            12     244556655578899999999999999987542    2234567788888888889999988888876542  


Q ss_pred             hHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHH
Q 009184          275 NDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSN  354 (541)
Q Consensus       275 ~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n  354 (541)
                               ...++.+..++...++.++..+..+++.+......         ..+.+...+.+. +..++..+.++++.
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     25677888889888988999888888877665432         234466677777 88899999998876


Q ss_pred             HhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcC
Q 009184          355 ITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLV  434 (541)
Q Consensus       355 l~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~  434 (541)
                      +..  +                    .+++.|++.+.+  +.++..++++|+.+..            .+.++.|..++.
T Consensus       215 ~~~--~--------------------~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------------~~~~~~L~~~l~  258 (276)
T d1oyza_         215 RKD--K--------------------RVLSVLCDELKK--NTVYDDIIEAAGELGD------------KTLLPVLDTMLY  258 (276)
T ss_dssp             TTC--G--------------------GGHHHHHHHHTS--SSCCHHHHHHHHHHCC------------GGGHHHHHHHHT
T ss_pred             hhh--h--------------------hhHHHHHHHhCC--hHHHHHHHHHHHHcCC------------HHHHHHHHHHHc
Confidence            632  2                    345667777764  4689999999998742            246777888776


Q ss_pred             C-CChHHHHHHHHHHH
Q 009184          435 C-PDPRIVTVCLEGLE  449 (541)
Q Consensus       435 ~-~~~~~~~~~l~~L~  449 (541)
                      . +|.+++..++++|.
T Consensus       259 ~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         259 KFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TSSCCHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHc
Confidence            5 56788888888764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1e-09  Score=101.35  Aligned_cols=253  Identities=15%  Similarity=0.108  Sum_probs=187.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHH
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      ..+.+++.|.++++.++..|+..|..+..            ...++.|++++++++ +.++..|+++|+.+....... .
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~~~~-~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKKCE-D   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTTTH-H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccccc-c
Confidence            45789999999999999999999987631            125899999999988 999999999999987532221 1


Q ss_pred             HHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcC
Q 009184          154 VVIDHGAVPIFV-KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRG  232 (541)
Q Consensus       154 ~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~  232 (541)
                      .+     ++.+. .++.++++.++..++.+|++++...+.....     .++.+...+ .+.+..++..++.++..+.. 
T Consensus        86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            11     23333 3567799999999999999998655432222     355666666 67788888888888776542 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 009184          233 KPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNI  312 (541)
Q Consensus       233 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl  312 (541)
                               ...++.+..++...+..+...+.+++..+......         ..+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     34567888888888888988888888877655442         344567778888999999999998876


Q ss_pred             hcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhc
Q 009184          313 VTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLEN  392 (541)
Q Consensus       313 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~  392 (541)
                      ..           ...++.|+..+.++   .+|..++++|+.+.  ++                    ..++.|..++..
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~~--------------------~~~~~L~~~l~~  259 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--DK--------------------TLLPVLDTMLYK  259 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--CG--------------------GGHHHHHHHHTT
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--CH--------------------HHHHHHHHHHcc
Confidence            42           34577888888654   58999999999884  22                    256677777766


Q ss_pred             -CchhHHHHHHHHHH
Q 009184          393 -AEFDIKKEAAWAIS  406 (541)
Q Consensus       393 -~~~~v~~~a~~aL~  406 (541)
                       ++.+++..|+.+|.
T Consensus       260 ~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         260 FDDNEIITSAIDKLK  274 (276)
T ss_dssp             SSCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHc
Confidence             47899999988764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.1e-09  Score=108.60  Aligned_cols=282  Identities=13%  Similarity=0.093  Sum_probs=179.8

Q ss_pred             CChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhhcCCC-
Q 009184          159 GAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLSMLRNATWTLSNFCRGKP-  234 (541)
Q Consensus       159 g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~-  234 (541)
                      ++++.+++.+.+  .+...+..++.+++.++.........-.....++.++..+.. +.+..++..++.++..+....+ 
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            345566665544  456677777888877763322111111111245666666643 3467789999999998886542 


Q ss_pred             -CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 009184          235 -QPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIV  313 (541)
Q Consensus       235 -~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~  313 (541)
                       ...........+.+..++.+++++++..+++++..++..........+.......+...+.+.+..++..++..+..++
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence             1122233456677788888899999999999999987654433221222233444556667788889999998888876


Q ss_pred             cCCchhH--------------------HHHHhcCchHHHHHhhcCC------CchhHHHHHHHHHHHHhcCCh-HHHHHH
Q 009184          314 TGDDMQT--------------------QCVIEYQALPCLLNLLSGN------YKKSIKKEACWTVSNITAGNR-EQIQVI  366 (541)
Q Consensus       314 ~~~~~~~--------------------~~~~~~~~l~~L~~lL~~~------~~~~v~~~a~~~L~nl~~~~~-~~~~~~  366 (541)
                      .......                    .......+++.+...+...      .+..++..|..++..++...+ ....  
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--  364 (458)
T d1ibrb_         287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP--  364 (458)
T ss_dssp             HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH--
T ss_pred             HHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh--
Confidence            4221110                    0011123344555554322      134688889999988886322 2222  


Q ss_pred             HhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHH
Q 009184          367 MHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLE  446 (541)
Q Consensus       367 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~  446 (541)
                                    .+++.+...+.++++.+|..|+.+|+.++.+...+..+.. -..+++.|..+++++++.++..+++
T Consensus       365 --------------~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~  429 (458)
T d1ibrb_         365 --------------HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAW  429 (458)
T ss_dssp             --------------HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             --------------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                          3567788888889999999999999999875432221111 1356888999999999999999999


Q ss_pred             HHHHHHHhhHh
Q 009184          447 GLENILKVGEA  457 (541)
Q Consensus       447 ~L~~l~~~~~~  457 (541)
                      +|..+......
T Consensus       430 ~l~~i~~~~~~  440 (458)
T d1ibrb_         430 TVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHGGG
T ss_pred             HHHHHHHHhhc
Confidence            99999876543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=4.7e-07  Score=96.71  Aligned_cols=365  Identities=12%  Similarity=0.079  Sum_probs=230.2

Q ss_pred             HHHH-HhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCChhHHH
Q 009184           76 PVMV-AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTSEHTK  153 (541)
Q Consensus        76 ~~l~-~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~~~~~  153 (541)
                      -+++ ..+.|+|+.++..|-..|..+....  +       .+++..|.+.+.+.+ +..+|..|+-.|.|..........
T Consensus         7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--~-------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~   77 (861)
T d2bpta1           7 AQLLENSILSPDQNIRLTSETQLKKLSNDN--F-------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKT   77 (861)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC--H-------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--c-------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhh
Confidence            4444 4467899999999999998876431  1       235677888886543 468888898888887653321111


Q ss_pred             HH--------H----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhc---CChHHHHHhhcCCChhhH
Q 009184          154 VV--------I----DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQ---GGLVPLLAQLNGQPKLSM  218 (541)
Q Consensus       154 ~i--------~----~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~---g~i~~Ll~~l~~~~~~~~  218 (541)
                      ..        +    ...+-..+++.+.++++.++..++.+++.++...      +...   ..++.|+..+....+..+
T Consensus        78 ~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~------~p~~~wpeli~~L~~~~~s~~~~~~  151 (861)
T d2bpta1          78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIE------LPHGAWPELMKIMVDNTGAEQPENV  151 (861)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH------GGGTCCHHHHHHHHHHTSTTSCHHH
T ss_pred             hhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh------CCcCchHHHHHHHHHHhcCCCcHHH
Confidence            00        0    0112356677788889999999999999987321      1111   135666666644555677


Q ss_pred             HHHHHHHHHhhhcCCCCCCh---hhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCChHHHH-HHHHhCcHHHHHH
Q 009184          219 LRNATWTLSNFCRGKPQPPF---DQVSPALPALAHLIHS--NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVFPRLAE  292 (541)
Q Consensus       219 ~~~a~~~L~~l~~~~~~~~~---~~~~~~l~~L~~lL~~--~d~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~l~~L~~  292 (541)
                      +..++.++..+|........   .....+++.++..+.+  .+..++..++.++.++...-..... ......+++.+..
T Consensus       152 ~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  231 (861)
T d2bpta1         152 KRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCE  231 (861)
T ss_dssp             HHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHH
Confidence            88889999999876532222   2234455555555543  3578999999999888755443221 1122245677888


Q ss_pred             hhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHH----------
Q 009184          293 FLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQ----------  362 (541)
Q Consensus       293 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~----------  362 (541)
                      .+.++++.++..++.++..++..........+..-+...+.....+. ++.++..++..+..++......          
T Consensus       232 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~  310 (861)
T d2bpta1         232 ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQS  310 (861)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            88999999999999999999876554433333322333334445555 7888888888777665421100          


Q ss_pred             -----------HHHH----Hhhc------------hh---------hHHHHHhcCcHHHHHH----HhhcCchhHHHHHH
Q 009184          363 -----------IQVI----MHVH------------AF---------SIIAVIEANIIGPLVA----LLENAEFDIKKEAA  402 (541)
Q Consensus       363 -----------~~~~----~~~~------------~~---------~~~~l~~~~~l~~L~~----~l~~~~~~v~~~a~  402 (541)
                                 ...+    ...-            ..         .........+++.+..    .+.+.++..+..++
T Consensus       311 ~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  390 (861)
T d2bpta1         311 PLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV  390 (861)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHH
Confidence                       0000    0000            00         0011112234444443    34456788999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHh
Q 009184          403 WAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEA  457 (541)
Q Consensus       403 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~  457 (541)
                      .+++.+............. ..+++.+...+.++++.++..+++++..+......
T Consensus       391 ~~l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  444 (861)
T d2bpta1         391 MAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE  444 (861)
T ss_dssp             HHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHhhcchhhHHHHH-HHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch
Confidence            9999998876655444433 24688899999999999999999999999876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=7.9e-09  Score=115.77  Aligned_cols=405  Identities=12%  Similarity=0.093  Sum_probs=237.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCCh----
Q 009184           74 NLPVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTS----  149 (541)
Q Consensus        74 ~l~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~----  149 (541)
                      .++.+++.|...++++|..|+++|..+...-+.+..     ..+++.|+..+.+++ ...+..+..+|..+...-+    
T Consensus        46 i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-----~~l~~~L~~~l~~~~-~~~r~~~~~~L~~i~~~l~~~~~  119 (1207)
T d1u6gc_          46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-----ETIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPASS  119 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-----HHHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-----HHHHHHHHHHhcCCc-hhhhHHHHHHHHHHHHhcccccc
Confidence            578889999999999999999999988765322222     224555665555544 4555544444443321100    


Q ss_pred             --------------------------hHHHH-------H-Hh---------CCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 009184          150 --------------------------EHTKV-------V-ID---------HGAVPIFVKLLYSPSDDVREQAVWALGNI  186 (541)
Q Consensus       150 --------------------------~~~~~-------i-~~---------~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  186 (541)
                                                ..+..       + ..         ..+++.|+..+.+++..+|..|+.+|+.+
T Consensus       120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l  199 (1207)
T d1u6gc_         120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL  199 (1207)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence                                      00000       0 00         11345566667778888999999999988


Q ss_pred             hCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHH
Q 009184          187 AGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWA  266 (541)
Q Consensus       187 ~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~  266 (541)
                      +...+.   ... ...+..++..+..+.+...++.++.++..+++..+..-......++|.+...+..++++++..++.+
T Consensus       200 ~~~~~~---~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~  275 (1207)
T d1u6gc_         200 VMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQA  275 (1207)
T ss_dssp             TTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred             HHHCCH---HHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            755432   111 1246667776655666667777888888888765443334457889999999999999999999988


Q ss_pred             HHHhccCChHHHHHHHHhCcHHHHHH-------------------------------------hhCCCChhhHHHHHHHH
Q 009184          267 LSYLSDGTNDKIQAVIEAGVFPRLAE-------------------------------------FLMHPSPSVLIPALRTV  309 (541)
Q Consensus       267 L~~l~~~~~~~~~~~~~~g~l~~L~~-------------------------------------lL~~~~~~v~~~al~~L  309 (541)
                      +..++...+........ .+++.+..                                     ...+..+.++..++.+|
T Consensus       276 l~~l~~~~~~~~~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L  354 (1207)
T d1u6gc_         276 FESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCL  354 (1207)
T ss_dssp             HHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHH
T ss_pred             HHHHHHhChhhhhhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHH
Confidence            88776443221110000 11111111                                     12234578899999999


Q ss_pred             hHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhc------hh-hHHHHHhcCc
Q 009184          310 GNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVH------AF-SIIAVIEANI  382 (541)
Q Consensus       310 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~------~~-~~~~l~~~~~  382 (541)
                      +.++...++...... ..+++.++..+.+. ++.+|..+..++..+...............      .. ....-.-..+
T Consensus       355 ~~l~~~~~~~l~~~~-~~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i  432 (1207)
T d1u6gc_         355 DAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI  432 (1207)
T ss_dssp             HHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHH
T ss_pred             HhHHHHHHHHHHHHH-HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHH
Confidence            999887665544433 46889999999887 889999999998887652110000000000      00 0001112246


Q ss_pred             HHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC--ChHHHHHHHHHHHHHHHhhHhhhh
Q 009184          383 IGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP--DPRIVTVCLEGLENILKVGEAEKN  460 (541)
Q Consensus       383 l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~--~~~~~~~~l~~L~~l~~~~~~~~~  460 (541)
                      ++.+...+.+.+..++..+..++..++.........++  ..+++.+...+...  ...++..++.++..++....... 
T Consensus       433 ~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~-  509 (1207)
T d1u6gc_         433 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV-  509 (1207)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG-
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhh--HhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH-
Confidence            67777888888899999999999888643211111111  11345566666543  34566777788877776432211 


Q ss_pred             cCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184          461 LGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  504 (541)
Q Consensus       461 ~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~  504 (541)
                              +...+  ......+.....++...+...|...+..+
T Consensus       510 --------~~~~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l  543 (1207)
T d1u6gc_         510 --------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL  543 (1207)
T ss_dssp             --------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             --------HHHHH--HhhhhhHHHHHccccHHHHHHHHHHHHHH
Confidence                    11111  12234455555667777776665554443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.9e-09  Score=106.98  Aligned_cols=277  Identities=18%  Similarity=0.209  Sum_probs=177.6

Q ss_pred             CCHHHHHHhhcC--CCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCCh
Q 009184           73 ENLPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGTS  149 (541)
Q Consensus        73 ~~l~~l~~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~~  149 (541)
                      +.++.+++.+.+  .++..+..++.++..+.... .+.........+++.+++.+.+++ +..++..|+.++..+.....
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            356777777765  44566777888887776542 111111111335778888887643 37899999999999987543


Q ss_pred             hHHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q 009184          150 EHTK-VVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSN  228 (541)
Q Consensus       150 ~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~  228 (541)
                      .... ........+.+..++.+++++++..++.+|..++...+..-...+.. .+..++.....+.+..++..++.++..
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDIDEVALQGIEFWSN  284 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3221 11222346777788888999999999999999986544321111111 233333333366777888888888877


Q ss_pred             hhcCC----------------C-CCCh----hhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCChHHHHH
Q 009184          229 FCRGK----------------P-QPPF----DQVSPALPALAHLIHS-------NDDEVLTDACWALSYLSDGTNDKIQA  280 (541)
Q Consensus       229 l~~~~----------------~-~~~~----~~~~~~l~~L~~lL~~-------~d~~v~~~a~~~L~~l~~~~~~~~~~  280 (541)
                      ++...                + ....    .....++|.+...+..       .+..++..+..++..++....+.   
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---  361 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---  361 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh---
Confidence            76321                0 0000    1123344555555432       12347777888887776433221   


Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCch-hHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          281 VIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDM-QTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       281 ~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      +. ..+++.+...+.++++.++..|+.+|+.++.+... .... .-..+++.++..+.++ ++.||..|+|+|+.++.
T Consensus       362 ~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         362 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            11 13567788888999999999999999999976432 2212 2246889999999998 99999999999999986

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=1.4e-08  Score=108.98  Aligned_cols=393  Identities=11%  Similarity=0.128  Sum_probs=225.2

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCC
Q 009184           80 AGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHG  159 (541)
Q Consensus        80 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g  159 (541)
                      ..+.+.++..+..++..+..+.... .+....-.-..+++.++..+.+++ +.++..++|+++.++...+..   +....
T Consensus       376 ~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~---~~~~~  450 (861)
T d2bpta1         376 QNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAES---IDPQQ  450 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGG---SCTTT
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhchh---hhhHH
Confidence            3455778888999999988876543 222222222347889999999888 999999999999987632111   11122


Q ss_pred             ChHHHHHhh---CCCCHHHHHHHHHHHHHhhCC----Chh-hHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhh
Q 009184          160 AVPIFVKLL---YSPSDDVREQAVWALGNIAGD----SPR-CRDLVLSQGGLVPLLAQLN-GQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       160 ~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~----~~~-~r~~i~~~g~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~  230 (541)
                      .++.++..+   ...++.++..+++++..++..    ... .....  ...+..++.... ...+..++..+..++..+.
T Consensus       451 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i  528 (861)
T d2bpta1         451 HLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMV  528 (861)
T ss_dssp             THHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHH--hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            333333332   135678888888888877621    111 11111  112444444442 3446677888888888887


Q ss_pred             cCCCCCChhhhhchHHHHHHhhc----cCC-----------hhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009184          231 RGKPQPPFDQVSPALPALAHLIH----SND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (541)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~lL~----~~d-----------~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~  295 (541)
                      ...+.........+.+.+...+.    ...           ..+...++.++..+............ ..+++.+...+.
T Consensus       529 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~~l~  607 (861)
T d2bpta1         529 EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLE  607 (861)
T ss_dssp             HHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhhhcc
Confidence            76543333333334444333332    111           12233344444444322221111111 134556666664


Q ss_pred             C-CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhH
Q 009184          296 H-PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSI  374 (541)
Q Consensus       296 ~-~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~  374 (541)
                      . ++..++..++.+++.++..........+ ..+++.|...+.+. ++.++..|+.+++.++........          
T Consensus       608 ~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l-~~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~----------  675 (861)
T d2bpta1         608 KKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFR----------  675 (861)
T ss_dssp             STTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGH----------
T ss_pred             cCCchhHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhH----------
Confidence            4 4567888999999998876544433333 35788999999988 889999999999999875554444          


Q ss_pred             HHHHhcCcHHHHHHHhhcC--chhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCC----Ch-------HHH
Q 009184          375 IAVIEANIIGPLVALLENA--EFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCP----DP-------RIV  441 (541)
Q Consensus       375 ~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~----~~-------~~~  441 (541)
                       ...+ .+++.|++.+.++  +..+|..++.+|+.++.........++-  .+++.+...+...    +.       .++
T Consensus       676 -~~~~-~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~  751 (861)
T d2bpta1         676 -RYSD-AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVL  751 (861)
T ss_dssp             -HHHH-HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHH
T ss_pred             -hhHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCcCCCcccHHHHHHHHHHH
Confidence             3332 4788888888764  5689999999999987633223333322  1344444444321    21       356


Q ss_pred             HHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHH----hcCCCHHHHHHHHHHHHHhC
Q 009184          442 TVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESL----QTHDNAEIYEKSVKLLETYW  505 (541)
Q Consensus       442 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L----~~~~~~~i~~~a~~il~~~~  505 (541)
                      ..++.++..++........    ...+|...+.     +.+..+    ..+.+.++...+..+|..+.
T Consensus       752 ~~~~~~~~~i~~~~~~~~~----~~~p~~~~i~-----~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~  810 (861)
T d2bpta1         752 EAVLDAYVGIVAGLHDKPE----ALFPYVGTIF-----QFIAQVAEDPQLYSEDATSRAAVGLIGDIA  810 (861)
T ss_dssp             HHHHHHHHHHHHHTTTCHH----HHGGGHHHHH-----HHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHH----HHHHHHHHHH-----HHHHHHHhCCccCCCHHHHHHHHHHHHHHH
Confidence            6677777666653211110    1223333332     223333    23467778777777765543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4e-07  Score=97.62  Aligned_cols=396  Identities=14%  Similarity=0.083  Sum_probs=242.4

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHHHccCCCCcHH-----------HHHhcCCHHHHHHhhcCCCcHHHHHHHHHHH
Q 009184           75 LPVMVAGVWS--NDSGVQYECTTQFRKLLSIERSPPIE-----------EVIRSGVVPRFVEFLLREDYPQLQFEAAWAL  141 (541)
Q Consensus        75 l~~l~~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~-----------~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L  141 (541)
                      +..+.+.+.+  .+..+|..|+..|++.+... .....           .-....+...+++.+.+++ . ++..++.++
T Consensus        37 ~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~-~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~-~-~~~~~a~~i  113 (876)
T d1qgra_          37 LVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET-Y-RPSSASQCV  113 (876)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC-S-SSCHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-ccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc-H-HHHHHHHHH
Confidence            4455555543  35778999999999888542 11110           1112335567888887765 3 455677888


Q ss_pred             HHHhcCC-hhHHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC-CChhh
Q 009184          142 TNIASGT-SEHTKVVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG-QPKLS  217 (541)
Q Consensus       142 ~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~-~~~~~  217 (541)
                      +.++... +...    =.++++.|++.+.+  .+..++..++.+|+.++.+-..-...-....+++.++..+.. ..+..
T Consensus       114 ~~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~  189 (876)
T d1qgra_         114 AGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  189 (876)
T ss_dssp             HHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHH
T ss_pred             HHHHHHHCCccc----cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHH
Confidence            8887521 1000    02578889888865  347889999999999975322111111112246667777743 34567


Q ss_pred             HHHHHHHHHHhhhcCCC-C-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC
Q 009184          218 MLRNATWTLSNFCRGKP-Q-PPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM  295 (541)
Q Consensus       218 ~~~~a~~~L~~l~~~~~-~-~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~  295 (541)
                      ++..++.++.++..... . ........+++.+...+.+++++++..++.++..++....+.........+...+...+.
T Consensus       190 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~  269 (876)
T d1qgra_         190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  269 (876)
T ss_dssp             HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888887765431 1 111222345667777788889999999999999988655544443444455666677778


Q ss_pred             CCChhhHHHHHHHHhHhhcCCchhHH--------------------HHHhcCchHHHHHhhcCC------CchhHHHHHH
Q 009184          296 HPSPSVLIPALRTVGNIVTGDDMQTQ--------------------CVIEYQALPCLLNLLSGN------YKKSIKKEAC  349 (541)
Q Consensus       296 ~~~~~v~~~al~~L~nl~~~~~~~~~--------------------~~~~~~~l~~L~~lL~~~------~~~~v~~~a~  349 (541)
                      +....++..++..+..++........                    ......+++.+...+...      .+..++..|.
T Consensus       270 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  349 (876)
T d1qgra_         270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  349 (876)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHH
Confidence            88888888888887777642221110                    011123344444444332      1335778888


Q ss_pred             HHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHH
Q 009184          350 WTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPL  429 (541)
Q Consensus       350 ~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  429 (541)
                      .++..++......+-           .    .+++.+...+.+.++..+..++.+++.+..+.......... ..+++.+
T Consensus       350 ~~l~~l~~~~~~~~~-----------~----~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l  413 (876)
T d1qgra_         350 VCLMLLATCCEDDIV-----------P----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTL  413 (876)
T ss_dssp             HHHHHHHHHHGGGGH-----------H----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHhhhhhh-----------h----hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHH
Confidence            888777653222111           1    24456666777788999999999999998766555444322 3467888


Q ss_pred             hhhcCCCChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 009184          430 CDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQTHDNAEIYEKSVKLLETY  504 (541)
Q Consensus       430 ~~lL~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~i~~~a~~il~~~  504 (541)
                      ...+.++++.++..+++++..+.+.......     ...+...     .+..+... .++++.+...+...+..+
T Consensus       414 ~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~-----~~~~~~~-----~~~~l~~~-l~~~~~v~~~~~~~l~~l  477 (876)
T d1qgra_         414 IELMKDPSVVVRDTAAWTVGRICELLPEAAI-----NDVYLAP-----LLQCLIEG-LSAEPRVASNVCWAFSSL  477 (876)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS-----STTTHHH-----HHHHHHHH-TTSCHHHHHHHHHHHHHH
T ss_pred             HHhhcCCccHHHHHHHHHHHHHHHHcchhhh-----hHHHhhh-----HHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence            8999999999999999999999876543221     1111111     12223222 245778887776666554

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.3e-08  Score=105.38  Aligned_cols=356  Identities=13%  Similarity=0.080  Sum_probs=214.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcCCC-cHHHHHHHHHHHHHHhcCC-hhHHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLRED-YPQLQFEAAWALTNIASGT-SEHTK  153 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~l~~~~-~~~~~  153 (541)
                      ..++..+.+++. .+..++.++..++..+ -|.-++   .+++|.|++.+.+++ ++.++..++.+|..++... ++...
T Consensus        93 ~~ll~~l~~~~~-~~~~~a~~i~~i~~~~-~p~~~W---peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~  167 (876)
T d1qgra_          93 NYVLHTLGTETY-RPSSASQCVAGIACAE-IPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (876)
T ss_dssp             HHHHHHTTTCCS-SSCHHHHHHHHHHHHH-GGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHG
T ss_pred             HHHHHHhcCCcH-HHHHHHHHHHHHHHHH-CCcccc---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            455566666553 3445666666665432 111001   357899999887654 3678888999999987532 22111


Q ss_pred             HHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHH-HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          154 VVIDHGAVPIFVKLLYS--PSDDVREQAVWALGNIAGDSPRCRDL-VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       154 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~-i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      .. ...+++.+++.+.+  ++..++..++.++.+........... ....-.++.+...+ .++++.++..++.++..++
T Consensus       168 ~~-~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~v~~~~~~~l~~l~  245 (876)
T d1qgra_         168 DK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT-QCPDTRVRVAALQNLVKIM  245 (876)
T ss_dssp             GG-HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence            11 12456778887765  46789999999998876543321110 01111234444545 7788999999999999998


Q ss_pred             cCCCCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHH--------------------HHHHhCcHHH
Q 009184          231 RGKPQPPFDQV-SPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQ--------------------AVIEAGVFPR  289 (541)
Q Consensus       231 ~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~--------------------~~~~~g~l~~  289 (541)
                      ...+....... ..+.+.+...+.+.++++...++..+..++........                    ......+++.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  325 (876)
T d1qgra_         246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (876)
T ss_dssp             HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence            76543333323 33555666677777888887777766666532111100                    0111133444


Q ss_pred             HHHhhCC-------CChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCC-hH
Q 009184          290 LAEFLMH-------PSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGN-RE  361 (541)
Q Consensus       290 L~~lL~~-------~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~  361 (541)
                      +...+..       .++.++..|..++..++.......-    ..+++.+...+.+. +...+..+++.++.+..+. ..
T Consensus       326 l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~~~i~~~l~~~-~~~~r~~~~~~l~~~~~~~~~~  400 (876)
T d1qgra_         326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV----PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPS  400 (876)
T ss_dssp             HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHH
T ss_pred             hHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhh----hhhHHHHHHhhccc-hHHHHHHHHHHHHhhhhhhhHH
Confidence            4444432       2345778888888777654332211    12345666677777 8889999999999998753 33


Q ss_pred             HHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHH
Q 009184          362 QIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIV  441 (541)
Q Consensus       362 ~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~  441 (541)
                      ...           ... ..+++.++..+.++++.++..++|+++.++............-..+++.+...+. +++.+.
T Consensus       401 ~~~-----------~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~v~  467 (876)
T d1qgra_         401 QLK-----------PLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-AEPRVA  467 (876)
T ss_dssp             HHH-----------HHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-SCHHHH
T ss_pred             HHH-----------HHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhc-CCHHHH
Confidence            333           222 3578899999999999999999999999875321100000000113445555554 467888


Q ss_pred             HHHHHHHHHHHHhhH
Q 009184          442 TVCLEGLENILKVGE  456 (541)
Q Consensus       442 ~~~l~~L~~l~~~~~  456 (541)
                      ..+++++..+.....
T Consensus       468 ~~~~~~l~~l~~~~~  482 (876)
T d1qgra_         468 SNVCWAFSSLAEAAY  482 (876)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888898888876543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=6.1e-06  Score=78.80  Aligned_cols=319  Identities=11%  Similarity=0.052  Sum_probs=204.2

Q ss_pred             CHHHHHHhhcC-CCHHHHHHHHHHHHHHHccCCCCcHH----HHHhc--CCHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Q 009184           74 NLPVMVAGVWS-NDSGVQYECTTQFRKLLSIERSPPIE----EVIRS--GVVPRFVEFLLREDYPQLQFEAAWALTNIAS  146 (541)
Q Consensus        74 ~l~~l~~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~----~~i~~--g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~  146 (541)
                      .+..++..|.. ..+++....+..+..++...  +...    .....  ..-+.+..++..++ .-....+...+..++.
T Consensus        75 ~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d--~~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~  151 (477)
T d1ho8a_          75 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD--KYGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQ  151 (477)
T ss_dssp             THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcC--cchhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHh
Confidence            56788888875 56777777888888888753  3222    22221  12345556665555 6677777778888877


Q ss_pred             CChhHH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHh--cCChHHHHHhhcC---------
Q 009184          147 GTSEHT---KVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLS--QGGLVPLLAQLNG---------  212 (541)
Q Consensus       147 ~~~~~~---~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~Ll~~l~~---------  212 (541)
                      ......   +....  ....+-.+....+......++.++..+....+ +|..+..  ...+++++..|..         
T Consensus       152 ~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~-~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~  228 (477)
T d1ho8a_         152 NGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATR  228 (477)
T ss_dssp             TTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             ccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcCcc-HHHHHHHcccchHHHHHHHHHHHhcccccch
Confidence            543322   22222  23444445566788888889999998887655 7887643  3356667766631         


Q ss_pred             -------CChhhHHHHHHHHHHhhhcCCCCCChhhh--hchHHHHHHhhc-cCChhHHHHHHHHHHHhccCChH-----H
Q 009184          213 -------QPKLSMLRNATWTLSNFCRGKPQPPFDQV--SPALPALAHLIH-SNDDEVLTDACWALSYLSDGTND-----K  277 (541)
Q Consensus       213 -------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~l~~L~~lL~-~~d~~v~~~a~~~L~~l~~~~~~-----~  277 (541)
                             .....++..++.+++-|+.+.........  .+.++.++.+++ +..+.+..-++.++.|++.....     .
T Consensus       229 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~  308 (477)
T d1ho8a_         229 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  308 (477)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             hhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence                   12457788999999998876422222211  245778888886 55788888899999999864321     2


Q ss_pred             HHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHh--------hc--------------CCchhH-HHHH--------
Q 009184          278 IQAVIEAGVFPRLAEFLMH--PSPSVLIPALRTVGNI--------VT--------------GDDMQT-QCVI--------  324 (541)
Q Consensus       278 ~~~~~~~g~l~~L~~lL~~--~~~~v~~~al~~L~nl--------~~--------------~~~~~~-~~~~--------  324 (541)
                      ...++..++++.+-.+...  .++++..- +..|...        ++              -++.++ ..+.        
T Consensus       309 ~~~~v~~~~l~~l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~  387 (477)
T d1ho8a_         309 KQLLLLGNALPTVQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  387 (477)
T ss_dssp             HHHHHHHCHHHHHHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHcchhHHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhc
Confidence            3345666666555444322  34433221 2222111        11              112222 1221        


Q ss_pred             --hcCchHHHHHhhcC---------CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcC
Q 009184          325 --EYQALPCLLNLLSG---------NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENA  393 (541)
Q Consensus       325 --~~~~l~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~  393 (541)
                        +..++..|+.+|.+         +.++.+..-||.=++.++..-|....           .+-+.|+=..+++++.++
T Consensus       388 e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~-----------il~~lg~K~~vM~Lm~h~  456 (477)
T d1ho8a_         388 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-----------VLDKTGGKADIMELLNHS  456 (477)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-----------HHHHHSHHHHHHHHTSCS
T ss_pred             ccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhH-----------HHHHcCcHHHHHHHhcCC
Confidence              23468889999962         22778889999999999998787776           666889999999999999


Q ss_pred             chhHHHHHHHHHHHhcc
Q 009184          394 EFDIKKEAAWAISNATS  410 (541)
Q Consensus       394 ~~~v~~~a~~aL~nl~~  410 (541)
                      |++||.+|+.|+..+..
T Consensus       457 d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         457 DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999988764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=4.5e-06  Score=79.75  Aligned_cols=275  Identities=13%  Similarity=0.108  Sum_probs=178.0

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCcHH---HHHhcCCHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHH
Q 009184           76 PVMVAGVWSNDSGVQYECTTQFRKLLSIERSPPIE---EVIRSGVVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHT  152 (541)
Q Consensus        76 ~~l~~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~---~~i~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~  152 (541)
                      +.+...+.+++.-....+...+..+++.. .....   ....  ....+-.+...++ ...+.-|+.++..+.. .++.|
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~--~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R  199 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLK--NNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYR  199 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHH--CHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHH--hhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHH
Confidence            34445565666666677777777776653 22222   2222  2333334445555 7888899999999888 58888


Q ss_pred             HHHHh--CCChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHhc--CChHHHHHhhc
Q 009184          153 KVVID--HGAVPIFVKLLYS-----------------PSDDVREQAVWALGNIAGDSPRCRDLVLSQ--GGLVPLLAQLN  211 (541)
Q Consensus       153 ~~i~~--~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~--g~i~~Ll~~l~  211 (541)
                      ..+..  ...++.|+..|..                 ....++-.++.+++-++.+.. ....+...  +.++.++.++.
T Consensus       200 ~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~  278 (477)
T d1ho8a_         200 DVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVK  278 (477)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHH
Confidence            87754  3345556655532                 235788899999999986554 45555444  34788888887


Q ss_pred             CCChhhHHHHHHHHHHhhhcCCCCCC------hhhhhchHHHHHHhhc--cCChhHHHHHHHHHHHh-------cc----
Q 009184          212 GQPKLSMLRNATWTLSNFCRGKPQPP------FDQVSPALPALAHLIH--SNDDEVLTDACWALSYL-------SD----  272 (541)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~l-------~~----  272 (541)
                      .+..+.+.+.++.++.|++.......      .....++++.+..+..  -.|+++..+.-..-..|       +.    
T Consensus       279 ~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y  358 (477)
T d1ho8a_         279 ITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEY  358 (477)
T ss_dssp             HCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            88899999999999999997642211      1122344554444332  24666654432211111       10    


Q ss_pred             -----------CChHHHHHHHH----------hCcHHHHHHhhC----------CCChhhHHHHHHHHhHhhcCCchhHH
Q 009184          273 -----------GTNDKIQAVIE----------AGVFPRLAEFLM----------HPSPSVLIPALRTVGNIVTGDDMQTQ  321 (541)
Q Consensus       273 -----------~~~~~~~~~~~----------~g~l~~L~~lL~----------~~~~~v~~~al~~L~nl~~~~~~~~~  321 (541)
                                 .+......+-.          ..++..|+.+|.          +.++.+..-||.=||.++...+....
T Consensus       359 ~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~  438 (477)
T d1ho8a_         359 VAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID  438 (477)
T ss_dssp             HHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             HHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhH
Confidence                       00000011111          135778888885          23566788899999999999998887


Q ss_pred             HHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          322 CVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       322 ~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      .+-+.|+=..++.+|.++ +++||.+|..++.-+..
T Consensus       439 il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         439 VLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            777889999999999999 99999999999987765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.24  E-value=1.6e-07  Score=73.16  Aligned_cols=109  Identities=19%  Similarity=0.216  Sum_probs=87.1

Q ss_pred             hCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhh
Q 009184          294 LMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFS  373 (541)
Q Consensus       294 L~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~  373 (541)
                      |+++++.+|..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++..  +             
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~-------------   52 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--E-------------   52 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--H-------------
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--h-------------
Confidence            466788889888888887531            3467788999988 99999999999987642  2             


Q ss_pred             HHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCCCChHHHHHHHHHHH
Q 009184          374 IIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLE  449 (541)
Q Consensus       374 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~  449 (541)
                             +.++.|+.++.++++.||..|+++|+.+.   ++         +.++.|..+++++++.++..++.+|.
T Consensus        53 -------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---~~---------~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          53 -------RAVEPLIKLLEDDSGFVRSGAARSLEQIG---GE---------RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SH---------HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -------hhHHHHHhhhccchhHHHHHHHHHHHHhC---cc---------chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                   24567888999999999999999999873   22         24677788999999999998888764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.16  E-value=3.8e-07  Score=70.90  Aligned_cols=108  Identities=21%  Similarity=0.196  Sum_probs=85.4

Q ss_pred             ccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHH
Q 009184          253 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCL  332 (541)
Q Consensus       253 ~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L  332 (541)
                      .++++.|+..++++|+.+..            ..++.|+..|.++++.++..|+++|+++..           .+.++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L   58 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPL   58 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHH
Confidence            45667777787787766531            346778889999999999999999998753           2346789


Q ss_pred             HHhhcCCCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHH
Q 009184          333 LNLLSGNYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAIS  406 (541)
Q Consensus       333 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~  406 (541)
                      ..+|.+. ++.||..|+++|+.+.  ++.                    .++.|..++.++++.+|..|+.+|.
T Consensus        59 ~~~l~d~-~~~VR~~a~~aL~~i~--~~~--------------------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          59 IKLLEDD-SGFVRSGAARSLEQIG--GER--------------------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHC-CTHHHHHHHHHHHHHC--SHH--------------------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             Hhhhccc-hhHHHHHHHHHHHHhC--ccc--------------------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999988 9999999999999883  232                    3567778899999999999998874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.0054  Score=54.53  Aligned_cols=200  Identities=16%  Similarity=0.160  Sum_probs=145.0

Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH----HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 009184          155 VIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCR----DLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFC  230 (541)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r----~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~  230 (541)
                      +...+.+..|+..|..-+.+-|..+..+++++.+.....+    +.+...  ...+..++....++++.-.+-..|...+
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHHHH
Confidence            3445778888999988889999999999999986544332    444432  2334444444456777777777777777


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHh---CcHHHHHHhhCCCChhhHHHHHH
Q 009184          231 RGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVFPRLAEFLMHPSPSVLIPALR  307 (541)
Q Consensus       231 ~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~v~~~al~  307 (541)
                      +...........+.+-.+...+..++-++..+|..++..+..........++..   .++.....+|.+++.-++..++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            765433444445566667777888899999999999988876655544445444   45677788999999999999999


Q ss_pred             HHhHhhcCCchh---HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHHHHHhc
Q 009184          308 TVGNIVTGDDMQ---TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTVSNITA  357 (541)
Q Consensus       308 ~L~nl~~~~~~~---~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nl~~  357 (541)
                      .||.+.......   ...+-+..-+..++.+|.+. +..++.+|..++--+++
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhc
Confidence            999998644322   22333556788999999998 99999999998888887

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.031  Score=49.57  Aligned_cols=222  Identities=13%  Similarity=0.111  Sum_probs=155.4

Q ss_pred             HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChh---hh---hchHHHHHHhhccCChhHHHHHHHHHHHh
Q 009184          197 VLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFD---QV---SPALPALAHLIHSNDDEVLTDACWALSYL  270 (541)
Q Consensus       197 i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~l  270 (541)
                      +...+.+..++..| ..-+-+.+..++.+++++.+........   ..   ..++..|+...  +++++...+-..|..+
T Consensus        65 ~~~~d~l~~Li~~L-~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREc  141 (330)
T d1upka_          65 LYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhC-CCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHH
Confidence            34455677777777 6667889999999999999876433221   11   33444444443  3555555555566665


Q ss_pred             ccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCchhHHHHHhc---CchHHHHHhhcCCCchhHHHH
Q 009184          271 SDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGDDMQTQCVIEY---QALPCLLNLLSGNYKKSIKKE  347 (541)
Q Consensus       271 ~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~~v~~~  347 (541)
                      +.. +.....++....+..+.+.+..++-++..-|..++..+.+.........+..   .++..+..+|.++ +.-+|..
T Consensus       142 ik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRq  219 (330)
T d1upka_         142 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQ  219 (330)
T ss_dssp             HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHH
T ss_pred             Hhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHH
Confidence            544 4456778888889999999999999999999999999988777666566543   3667778889888 9999999


Q ss_pred             HHHHHHHHhcC--ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC--HHHHHHHHHc
Q 009184          348 ACWTVSNITAG--NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT--HEQIKFLVIQ  423 (541)
Q Consensus       348 a~~~L~nl~~~--~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~l~~~  423 (541)
                      +...|+.+...  +...+..          ++-+..-+..++.+|.+....++-+|-.++--++.+.+  +.....|..+
T Consensus       220 SlKLLgelLldr~N~~vm~~----------Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~N  289 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTK----------YISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN  289 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHH----------HTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhHHHHHHH----------HhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHh
Confidence            99999999863  2333220          33355678889999999999999999999988887543  3333444332


Q ss_pred             --CChHHHhhhc
Q 009184          424 --GCIKPLCDLL  433 (541)
Q Consensus       424 --~~i~~L~~lL  433 (541)
                        .++..|-++.
T Consensus       290 r~kLl~fl~~f~  301 (330)
T d1upka_         290 QAKLIEFLSKFQ  301 (330)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC
Confidence              3344444443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.046  Score=57.82  Aligned_cols=303  Identities=10%  Similarity=0.060  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHH--------hcCC
Q 009184          133 LQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLY--SPSDDVREQAVWALGNIAGDSPRCRDLVL--------SQGG  202 (541)
Q Consensus       133 i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--------~~g~  202 (541)
                      .+..|..++..++....+.....+-.-+...+.....  +.+...++.++.+++.++...........        ..-.
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            4566666777776644333222211111111122222  25677888888888888632211100000        0001


Q ss_pred             hHHHHHhhc--CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChH----
Q 009184          203 LVPLLAQLN--GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTND----  276 (541)
Q Consensus       203 i~~Ll~~l~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~----  276 (541)
                      ...+...+.  ......++..++|+++.++....   ......+++.++.+|.+++..++..|++++..++.....    
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~  533 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccc
Confidence            111222221  33456788899999999887542   234577899999999999999999999999988753211    


Q ss_pred             -------HHHHHHHhCcHHHHHHhhCCCCh-----hhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHh----hcCCC
Q 009184          277 -------KIQAVIEAGVFPRLAEFLMHPSP-----SVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNL----LSGNY  340 (541)
Q Consensus       277 -------~~~~~~~~g~l~~L~~lL~~~~~-----~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~l----L~~~~  340 (541)
                             .....+. .++..++..+.....     .....++.+++.++....+...... ..+++.|...    ..++.
T Consensus       534 ~~~~~~~~l~p~l~-~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~  611 (959)
T d1wa5c_         534 AFIFHKEDISNSTE-ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPS  611 (959)
T ss_dssp             CBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCC
T ss_pred             hhhccHHHHHhhHH-HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCcc
Confidence                   0010111 234445544433221     1223456666665533222111111 1223333333    33443


Q ss_pred             chhHHHHHHHHHHHHhcC-ChHHHHHHHhhchhhHHHHHhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCC---CHHH
Q 009184          341 KKSIKKEACWTVSNITAG-NREQIQVIMHVHAFSIIAVIEANIIGPLVALLENAEFDIKKEAAWAISNATSGG---THEQ  416 (541)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~---~~~~  416 (541)
                      ++.....+..+++.+... +++...           . +...++|.+...+.....+....+...+..+....   .+..
T Consensus       612 ~~~~~~~~~e~l~~l~~~~~~~~~~-----------~-l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  679 (959)
T d1wa5c_         612 NPRFTHYTFESIGAILNYTQRQNLP-----------L-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESI  679 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGHH-----------H-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTT
T ss_pred             chHHHHHHHHHHHHHHHhcCchhHH-----------H-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHH
Confidence            566777777788887762 333332           2 33457788888887766666666666665554322   1111


Q ss_pred             HHHHHHcCChHHHhhhcCCCChHHHHHHHHHHHHHHHhhHhh
Q 009184          417 IKFLVIQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAE  458 (541)
Q Consensus       417 ~~~l~~~~~i~~L~~lL~~~~~~~~~~~l~~L~~l~~~~~~~  458 (541)
                            ...+..+..............+...+.+++..++..
T Consensus       680 ------~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  715 (959)
T d1wa5c_         680 ------KPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSI  715 (959)
T ss_dssp             ------GGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGG
T ss_pred             ------HHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHh
Confidence                  012233332222233334556667777777666543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.093  Score=55.32  Aligned_cols=181  Identities=8%  Similarity=0.065  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--------HHHHHh--c
Q 009184          131 PQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRC--------RDLVLS--Q  200 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--------r~~i~~--~  200 (541)
                      +.++..++|+++..+......  ..  ..+++.++.+|.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~~--~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTKA--QL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCHH--HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccHH--HH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            779999999999988743221  11  135788999999999999999999999998532210        000000  0


Q ss_pred             CChHHHHHhhcCCCh----hhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhc----c-CChhHHHHHHHHHHHhc
Q 009184          201 GGLVPLLAQLNGQPK----LSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIH----S-NDDEVLTDACWALSYLS  271 (541)
Q Consensus       201 g~i~~Ll~~l~~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~----~-~d~~v~~~a~~~L~~l~  271 (541)
                      ..+..++..+.....    ......++.++..+..............+++.+...+.    + .++.....+..+++.+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            123344444422221    11123455555555433222222333445555555442    2 24556677777777765


Q ss_pred             cC-ChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 009184          272 DG-TNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTVGNIVTGD  316 (541)
Q Consensus       272 ~~-~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~  316 (541)
                      .. .++... -....+++.+...+..........++..+..+....
T Consensus       628 ~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         628 NYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            43 233323 233456788888887776667777777776665433

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.12  E-value=0.0065  Score=52.54  Aligned_cols=41  Identities=17%  Similarity=0.154  Sum_probs=27.5

Q ss_pred             hhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 009184          124 FLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWAL  183 (541)
Q Consensus       124 lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L  183 (541)
                      +|.++. .+++..|+.                  .-.+..|..+++++++.|+..+++.|
T Consensus        50 ~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          50 YLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             GTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             HhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHc
Confidence            566666 777765542                  12356677788888888888887543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.04  E-value=0.51  Score=42.72  Aligned_cols=206  Identities=15%  Similarity=0.153  Sum_probs=121.3

Q ss_pred             hHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcC---CChhhHHHHHHHHHHhh----hc
Q 009184          161 VPIFVKLLYSPS--DDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNG---QPKLSMLRNATWTLSNF----CR  231 (541)
Q Consensus       161 i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~---~~~~~~~~~a~~~L~~l----~~  231 (541)
                      +..+.+++.+..  .......++.+.....  | ..+      .+..+..++..   ..++.+...+..+++++    |.
T Consensus        90 ~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--P-t~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          90 LLFLKRTLASEQLTSAEATQIVASTLSNQQ--A-TRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--C-CHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHhccCC--C-CHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            445566665532  3333344455544332  2 111      24445555521   13455666666655554    44


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCC-------CChhhHHH
Q 009184          232 GKPQPPFDQVSPALPALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMH-------PSPSVLIP  304 (541)
Q Consensus       232 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-------~~~~v~~~  304 (541)
                      ..+.........+...+.+.....+.+-..-++.+|+|+..  +         +.++.+..++..       ....++..
T Consensus       161 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~a  229 (336)
T d1lsha1         161 NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAE  229 (336)
T ss_dssp             TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHHH
Confidence            44444344445555556666667777777778899998752  2         346677777743       24568999


Q ss_pred             HHHHHhHhhcCCchhHHHHHhcCchHHHHHhhcC-CCchhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHHHhcCcH
Q 009184          305 ALRTVGNIVTGDDMQTQCVIEYQALPCLLNLLSG-NYKKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAVIEANII  383 (541)
Q Consensus       305 al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l~~~~~l  383 (541)
                      |++++.++....+...        .+.+.+++.+ ..+.++|..|+..|... .-+..                    .+
T Consensus       230 Ai~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~--------------------~l  280 (336)
T d1lsha1         230 AIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA--------------------LV  280 (336)
T ss_dssp             HHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH--------------------HH
T ss_pred             HHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH--------------------HH
Confidence            9999999987655333        2234455443 33789999998888654 11222                    23


Q ss_pred             HHHHHHhhc-CchhHHHHHHHHHHHhccCCCHH
Q 009184          384 GPLVALLEN-AEFDIKKEAAWAISNATSGGTHE  415 (541)
Q Consensus       384 ~~L~~~l~~-~~~~v~~~a~~aL~nl~~~~~~~  415 (541)
                      ..+...+.. ++..|...+...|.++.....|.
T Consensus       281 ~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         281 SMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            345555544 57889998999999998866554

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.46  E-value=0.0077  Score=52.05  Aligned_cols=132  Identities=14%  Similarity=0.126  Sum_probs=65.5

Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhhcCCCCCChhhhhchH
Q 009184          166 KLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLLAQLNGQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPAL  245 (541)
Q Consensus       166 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l  245 (541)
                      .+|.+++.+++..|..                  .-.+..|..++ +++++.|+..++..|.                 .
T Consensus        49 ~~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll-~D~d~~VR~~AA~~Lp-----------------~   92 (233)
T d1lrva_          49 QYLADPFWERRAIAVR------------------YSPVEALTPLI-RDSDEVVRRAVAYRLP-----------------R   92 (233)
T ss_dssp             GGTTCSSHHHHHHHHT------------------TSCGGGGGGGT-TCSSHHHHHHHHTTSC-----------------S
T ss_pred             HHhcCCcHHHHHHHHh------------------cCCHHHHHHHh-cCCCHHHHHHHHHHcC-----------------H
Confidence            3677788888865542                  11244555556 7777888877764321                 1


Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH-----hHhhcCCc-hh
Q 009184          246 PALAHLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLMHPSPSVLIPALRTV-----GNIVTGDD-MQ  319 (541)
Q Consensus       246 ~~L~~lL~~~d~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~v~~~al~~L-----~nl~~~~~-~~  319 (541)
                      +.+..++..++..|+..+...+.                  .+.|..++.++++.++..+...+     ..+....+ ..
T Consensus        93 ~~L~~L~~D~d~~VR~~aa~~l~------------------~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~V  154 (233)
T d1lrva_          93 EQLSALMFDEDREVRITVADRLP------------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQV  154 (233)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHHSC------------------TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHH
T ss_pred             HHHHHHhcCCChhHHHHHHhccC------------------HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHH
Confidence            23445555666666665544321                  12233344445555554444321     11111111 11


Q ss_pred             HHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184          320 TQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (541)
Q Consensus       320 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (541)
                      ...+...-..+.|..++.+. ++.||..++..+
T Consensus       155 R~~aA~~~~~~~L~~l~~D~-d~~VR~~aa~~L  186 (233)
T d1lrva_         155 RKLVAKRLPEESLGLMTQDP-EPEVRRIVASRL  186 (233)
T ss_dssp             HHHHHHHSCGGGGGGSTTCS-SHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHccCC-CHHHHHHHHHhc
Confidence            11222222334556666666 777877776543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.92  E-value=0.32  Score=44.21  Aligned_cols=138  Identities=13%  Similarity=0.055  Sum_probs=99.6

Q ss_pred             chhHHHHHHHHHHHHhcCChHHHHHHHhhchhhHHHH-HhcCcHHHHHHHhhcCchhHHHHHHHHHHHhccCCC-----H
Q 009184          341 KKSIKKEACWTVSNITAGNREQIQVIMHVHAFSIIAV-IEANIIGPLVALLENAEFDIKKEAAWAISNATSGGT-----H  414 (541)
Q Consensus       341 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~-----~  414 (541)
                      +.....++..||..+... .....           .+ -..+.+..|...+.++.+.++..|...|..++....     .
T Consensus        69 d~~~e~e~l~CLkalmn~-~~G~~-----------~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~  136 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNN-KFGIK-----------TMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNE  136 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHH-----------HHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHH
T ss_pred             cHHHHHHHHHHHHHHhcc-HHHHH-----------HHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHH
Confidence            355778888999888774 44444           44 466889999999999999999999999988875421     1


Q ss_pred             HHH------HHHHHcCChHHHhhhcCCC-ChHHHHHHHHHHHHHHHhhHhhhhcCCCCcchhhhHhhhcchHHHHHHHhc
Q 009184          415 EQI------KFLVIQGCIKPLCDLLVCP-DPRIVTVCLEGLENILKVGEAEKNLGNTDVNVFTQMIDDAEGLEKIESLQT  487 (541)
Q Consensus       415 ~~~------~~l~~~~~i~~L~~lL~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~  487 (541)
                      ...      ....+.+-..++++.++.. +.+....++..+..|+...+....     --..+..|..+|..+.|..+..
T Consensus       137 ~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~-----R~~lR~E~~~~Gl~~il~~l~~  211 (343)
T d2bnxa1         137 RVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----RVHIRSELMRLGLHQVLQELRE  211 (343)
T ss_dssp             HHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH-----HHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH-----HHHHHHHHHHCChHHHHHHHHc
Confidence            111      1223346678888888764 567888888888888876554332     1236777888999999999998


Q ss_pred             CCCHHHHH
Q 009184          488 HDNAEIYE  495 (541)
Q Consensus       488 ~~~~~i~~  495 (541)
                      ..++++..
T Consensus       212 ~~~~~L~~  219 (343)
T d2bnxa1         212 IENEDMKV  219 (343)
T ss_dssp             CCCHHHHH
T ss_pred             cCChHHHH
Confidence            88887754

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=94.68  E-value=1.4  Score=39.55  Aligned_cols=201  Identities=15%  Similarity=0.135  Sum_probs=121.4

Q ss_pred             CHHHHHHhhcCCCcHHHHHHHHHHHHHHhcCChhHHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhh----C
Q 009184          117 VVPRFVEFLLREDYPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVKLLYS----PSDDVREQAVWALGNIA----G  188 (541)
Q Consensus       117 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~nl~----~  188 (541)
                      .+..+.+++.+.. -.- .+|...+..+.... ....     ..+..+..++.+    .++.++..+..++|+++    .
T Consensus        89 a~~~i~~~I~~~~-ls~-~ea~~~l~~l~~~~-~Pt~-----~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~  160 (336)
T d1lsha1          89 ALLFLKRTLASEQ-LTS-AEATQIVASTLSNQ-QATR-----ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCA  160 (336)
T ss_dssp             HHHHHHHHHHTTC-SCH-HHHHHHHHHHHHTC-CCCH-----HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-CCH-HHHHHHHHHHhccC-CCCH-----HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhc
Confidence            4556777776655 111 22333344443321 1111     124556666665    57889999999999886    2


Q ss_pred             CChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHHHhhhcCCCCCChhhhhchHHHHHHhhcc-------CChh
Q 009184          189 DSPRCRDLVLSQGGLVPLLAQLN---GQPKLSMLRNATWTLSNFCRGKPQPPFDQVSPALPALAHLIHS-------NDDE  258 (541)
Q Consensus       189 ~~~~~r~~i~~~g~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~l~~L~~lL~~-------~d~~  258 (541)
                      ..+.+...     .++.+...+.   ...+.+-...++.+|.|+-.          ...++.+.+++..       ....
T Consensus       161 ~~~~~~~~-----~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         161 NTVSCPDE-----LLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             TCSSCCGG-----GTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             CCCCCcHH-----HHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHH
Confidence            22222222     3444444442   34455666778889998853          3457777777743       2467


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCCchhHHHHHhcCchHHHHHhh
Q 009184          259 VLTDACWALSYLSDGTNDKIQAVIEAGVFPRLAEFLM--HPSPSVLIPALRTVGNIVTGDDMQTQCVIEYQALPCLLNLL  336 (541)
Q Consensus       259 v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL  336 (541)
                      ++..|+|++..+....+....        +.+.+++.  ..+.++|..|+..|...  .+. .       ..+..+...+
T Consensus       226 vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~-~-------~~l~~i~~~l  287 (336)
T d1lsha1         226 VQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES--KPS-V-------ALVSMVAVRL  287 (336)
T ss_dssp             HHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC-H-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc--CCC-H-------HHHHHHHHHH
Confidence            999999999999876654322        34455553  34678999988887442  222 1       1345677777


Q ss_pred             cCCCchhHHHHHHHHHHHHhcC
Q 009184          337 SGNYKKSIKKEACWTVSNITAG  358 (541)
Q Consensus       337 ~~~~~~~v~~~a~~~L~nl~~~  358 (541)
                      ....+..|.......|.+++..
T Consensus       288 ~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         288 RREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HhCcHHHHHHHHHHHHHHHHhC
Confidence            7665788888888888888874

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.61  E-value=1  Score=40.67  Aligned_cols=157  Identities=11%  Similarity=0.106  Sum_probs=102.8

Q ss_pred             HHHHhhcCCC-HHHHHHHHHHHHHHHccCCCCcHHHHHhcCCHHHHHHhhcC----C------CcHHHHHHHHHHHHHHh
Q 009184           77 VMVAGVWSND-SGVQYECTTQFRKLLSIERSPPIEEVIRSGVVPRFVEFLLR----E------DYPQLQFEAAWALTNIA  145 (541)
Q Consensus        77 ~l~~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~i~~g~i~~Lv~lL~~----~------~~~~i~~~a~~~L~~l~  145 (541)
                      ..+..|+++- .+.....+..|+.-+...+..-++.+ ..+++..|+.+|..    .      .+...+..++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            4555565533 33345566666665654322224555 34556677776631    1      12568899999999998


Q ss_pred             cCChhHHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhhHHH----------HHhcCChHHHHHhhcC
Q 009184          146 SGTSEHTKVVI-DHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDS--PRCRDL----------VLSQGGLVPLLAQLNG  212 (541)
Q Consensus       146 ~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~--~~~r~~----------i~~~g~i~~Ll~~l~~  212 (541)
                      . +......++ ..+++..+...+.++.+.++..|+..|..+|...  +.....          .-+.+-+.+++..+..
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            8 445555555 5688999999999999999999999999998532  111222          2234557788888866


Q ss_pred             CChhhHHHHHHHHHHhhhcCCCC
Q 009184          213 QPKLSMLRNATWTLSNFCRGKPQ  235 (541)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~~~  235 (541)
                      ..+.+.+..++..+..+..+.+.
T Consensus       164 ~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         164 GTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             cccHHHHHHHHHHHHHHHcCccc
Confidence            66777777777777777776543

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=1.4  Score=39.39  Aligned_cols=214  Identities=12%  Similarity=0.004  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHhcCC---hhHHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHhcCChHHHH
Q 009184          131 PQLQFEAAWALTNIASGT---SEHTKVVIDHGAVPIFVKLLYSPSDDVREQAVWALGNIAGDSPRCRDLVLSQGGLVPLL  207 (541)
Q Consensus       131 ~~i~~~a~~~L~~l~~~~---~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~Ll  207 (541)
                      +.-..-+...|..+....   +......++...+..|+.++.++++.-|+....+|..+-+.-...|..+... +...+.
T Consensus       102 WpHL~lVY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~-i~~if~  180 (343)
T d2jaka1         102 WPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFY  180 (343)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHH
T ss_pred             CchHHHHHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHH
Confidence            343444555566655421   2223333444557888999999999999999999999987777777776554 456667


Q ss_pred             HhhcCCChhhHHHHHHHHHHhhhcCCCCC-ChhhhhchHHHHHHhhccCChh-HHHHHHHHHHHhccCChHHHHHHHHhC
Q 009184          208 AQLNGQPKLSMLRNATWTLSNFCRGKPQP-PFDQVSPALPALAHLIHSNDDE-VLTDACWALSYLSDGTNDKIQAVIEAG  285 (541)
Q Consensus       208 ~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~l~~~~~~~~~~~~~~g  285 (541)
                      +.+.......-...+++.+..+..+...+ ......-....++.|.....-. .-.....++......++.....     
T Consensus       181 ~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~-----  255 (343)
T d2jaka1         181 RFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----  255 (343)
T ss_dssp             HHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-----
T ss_pred             HHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHH-----
Confidence            76755556666777888888888776333 3333333444555555443322 2222233333333333332221     


Q ss_pred             cHHHHHHhhCCCChhhHHHHHHHHhHhhcCCc-hhHHHHHhcCchHHHHHhhcCCCchhHHHHHHHHH
Q 009184          286 VFPRLAEFLMHPSPSVLIPALRTVGNIVTGDD-MQTQCVIEYQALPCLLNLLSGNYKKSIKKEACWTV  352 (541)
Q Consensus       286 ~l~~L~~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~a~~~L  352 (541)
                      ++..+++.--..+..-...-+.-|..+....+ ...+.+ ...++..+...+.+. +..|-+.|+..+
T Consensus       256 ~i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~-~~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         256 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKI-MEPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            22233333322333333344444555444333 222222 224566667777777 777766666544

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=3.7  Score=31.53  Aligned_cols=72  Identities=8%  Similarity=-0.075  Sum_probs=58.0

Q ss_pred             cHHHHHHHhhcCchhHHHHHHHHHHHhccCCCHHHHHHHHHcCChHHHhhhcCC------CChHHHHHHHHHHHHHHH
Q 009184          382 IIGPLVALLENAEFDIKKEAAWAISNATSGGTHEQIKFLVIQGCIKPLCDLLVC------PDPRIVTVCLEGLENILK  453 (541)
Q Consensus       382 ~l~~L~~~l~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~------~~~~~~~~~l~~L~~l~~  453 (541)
                      ++..|..-+.+.++.++..|+..|-.++.++.+.....+.+.+++..|..++..      .+..|...++..|..-..
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            456677778889999999999999999998888888888888999999998863      345677777777766543