Citrus Sinensis ID: 009190

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLREHAEIQYITR
ccEEEEccEEEEEccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcccccccccEEEEEEEEEccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEEccccccccccccccccccEEEEcccccccccHHHHHcccccccEEEEEEEccccccccccccccEEEEEEEccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcc
cEEEEEEccEEEEccccccccccHHHEcccccEEcccccccccccccccccccEcccccccccccccEEccccccHEEcccHHcccccccEEEEEEccccEEEEEEEEcHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcEEcccHHHHcccEEEEEEEEEEccccccccEEccccccccEEEEEccccccccccHcccEccccccEEEEEEEccHHHcHHHcccccEEEEEEEEEEEccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcc
melcitnstrilnlnslnrtglplsvslknstvefmnqnyfnsqklssfSRQIHLylhqpqfhrspvrifasssssvalgpekdrlpadievtespepnstvrlsvevpeavcKDSYKRVLNELMKQVkipgfrpgkipesvlVGFVGEQNVKKATVESILKRtlphamtsvTGRALRDSVRIVTKFSEMEKNYsslnslsydvlvdvapevkwnpgngyknlKIVVEIDNDTAAQQAAEEELRRRHKSLgslkivtdrglqvgdiaIVDIsattidedesnvqnipdaetkgfhfdtedgdkvlpgfldsisgiqrgetksfrlafpESWRQEHLRGVQAQFTVECRELFYrdlpklddslagkllpgctTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIkqnlavgdifkrenlqfsTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLREHAEIQYITR
MELCITNStrilnlnslnrtglPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEvtespepnstvrlsvevpeavCKDSYKRVLNELMKQvkipgfrpgkIPESVLVGFVGEQNVKKATVESilkrtlphamtsvtgralrdSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRrrhkslgslkivtdrglqvgdIAIVDISattidedesnvqNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEqtakdqatdnAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENItnvikqnlavgdiFKRENLQFSTEDLVKEVENSIAElkqqkqeydedrVREQVIDILEGAKVLEWLREHAEIQYITR
MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTaaqqaaeeeLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLREHAEIQYITR
***CITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIF***********************************VEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDN******************LGSLKIVTDRGLQVGDIAIVDISATTID***************GFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQA********************FLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVK********************VREQVIDILEGAKVLEWLREHAEIQYI**
*******STRILNLNSLNRT***********TVEF***************************************************************NSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL*****************AILDQLYKMVEIDIPQSLFEEQGRQLYG********************************QRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVE********************QVIDILEGAKVLEWLREHAEIQYI**
MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTA***********RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLREHAEIQYITR
MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLREHAEIQYITR
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELCITNSTRILNLNSLNRTGLPLSVSLKNSTVEFMNQNYFNSQKLSSFSRQIHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSxxxxxxxxxxxxxxxxxxxxxxxxxxxxEQVIDILEGAKVLEWLREHAEIQYITR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query540 2.2.26 [Sep-21-2011]
Q8S9L5547 Trigger factor-like prote yes no 0.996 0.983 0.621 0.0
Q118P4485 Trigger factor OS=Trichod yes no 0.803 0.894 0.261 1e-45
B0JL93464 Trigger factor OS=Microcy yes no 0.785 0.913 0.270 2e-45
B2IT89480 Trigger factor OS=Nostoc yes no 0.798 0.897 0.275 3e-41
B1XL18454 Trigger factor OS=Synecho yes no 0.785 0.933 0.273 6e-41
Q3M725471 Trigger factor OS=Anabaen yes no 0.792 0.908 0.269 9e-41
Q8YQX9471 Trigger factor OS=Nostoc yes no 0.792 0.908 0.269 1e-40
B7JW76455 Trigger factor OS=Cyanoth yes no 0.803 0.953 0.265 4e-39
A5GHT2481 Trigger factor OS=Synecho yes no 0.777 0.873 0.283 8e-39
Q2JQ33 556 Trigger factor OS=Synecho yes no 0.790 0.767 0.276 4e-38
>sp|Q8S9L5|TIG_ARATH Trigger factor-like protein TIG OS=Arabidopsis thaliana GN=TIG PE=2 SV=1 Back     alignment and function desciption
 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/549 (62%), Positives = 447/549 (81%), Gaps = 11/549 (2%)

Query: 1   MELCITNSTRILN-----LNSLNRTGLPLSVSLKNSTVEF---MNQNYFNSQKLSSFSRQ 52
           MELC+ ++T  +      L S+ R  +   +   +S ++F   + +       +S  SR+
Sbjct: 1   MELCVISTTTTVKAINPFLPSITRR-VSSRLFQSDSVLQFGGRLKKPISRPLDMSCVSRK 59

Query: 53  IHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAV 112
           I  +      H    R+FA++S +V    ++D+LPAD++VTE+ + NS+V+LSVEVPE V
Sbjct: 60  IGFF-GDFMSHGGNFRLFAAASPAVETSVKEDKLPADLKVTETVQANSSVKLSVEVPEIV 118

Query: 113 CKDSYKRVLNELMKQVKIPGFRP-GKIPESVLVGFVGEQNVKKATVESILKRTLPHAMTS 171
           C+D Y+RVL E MK  K+PGFRP  ++PE+++VGFVG Q V +ATVESILKRTLPHAM S
Sbjct: 119 CEDCYQRVLTEFMKLSKVPGFRPKTRVPENIIVGFVGRQYVLRATVESILKRTLPHAMES 178

Query: 172 VTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDN 231
           VTGRAL+DS++IV+ F +MEK YS L +LSY+V+VDV PE+KWNP +GYKN+K+VVE+ +
Sbjct: 179 VTGRALKDSIQIVSSFPDMEKAYSKLKTLSYEVVVDVVPELKWNPEDGYKNMKVVVELGD 238

Query: 232 DTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAET 291
           +  A++A E +LR+++KSLG+LKIVT+RGLQVGD+A+VDISATTIDED S  Q IPDAE+
Sbjct: 239 EIDAKKACERQLRQKYKSLGALKIVTERGLQVGDLAVVDISATTIDEDGSTGQAIPDAES 298

Query: 292 KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351
           KGFHFDTE+G+++LPGFLD+I GI+ GE+KSF L FPESW+QE LRG +AQFTV+C+ELF
Sbjct: 299 KGFHFDTEEGNRLLPGFLDAIIGIRAGESKSFTLVFPESWKQESLRGQRAQFTVDCKELF 358

Query: 352 YRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEID 411
           YRDLP LDDSLA KLLPGCTT+++V+ETL ++C+E+EQ AK+QATDNAIL+Q+ KMVE++
Sbjct: 359 YRDLPTLDDSLADKLLPGCTTLKEVEETLAKRCQEMEQEAKEQATDNAILEQIRKMVEVE 418

Query: 412 IPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNL 471
           IPQSLFEEQGRQ YGA+LL++Q  MKLNE QLA+LSS KAV EFLE QRE+ITN+IKQN+
Sbjct: 419 IPQSLFEEQGRQFYGARLLEIQGNMKLNEDQLASLSSQKAVNEFLETQRESITNIIKQNI 478

Query: 472 AVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLRE 531
           AVGDIFKRENL+FST++LVKEVENSI+E K+ KQE+DE+RV++QV +ILEGAKVLEWL++
Sbjct: 479 AVGDIFKRENLEFSTDELVKEVENSISEFKKHKQEFDEERVKDQVQEILEGAKVLEWLKD 538

Query: 532 HAEIQYITR 540
            AEIQYITR
Sbjct: 539 RAEIQYITR 547
Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q118P4|TIG_TRIEI Trigger factor OS=Trichodesmium erythraeum (strain IMS101) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|B0JL93|TIG_MICAN Trigger factor OS=Microcystis aeruginosa (strain NIES-843) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|B2IT89|TIG_NOSP7 Trigger factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|B1XL18|TIG_SYNP2 Trigger factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q3M725|TIG_ANAVT Trigger factor OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q8YQX9|TIG_NOSS1 Trigger factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|B7JW76|TIG_CYAP8 Trigger factor OS=Cyanothece sp. (strain PCC 8801) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|A5GHT2|TIG_SYNPW Trigger factor OS=Synechococcus sp. (strain WH7803) GN=tig PE=3 SV=1 Back     alignment and function description
>sp|Q2JQ33|TIG_SYNJB Trigger factor OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=tig PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
255580756542 Trigger factor, putative [Ricinus commun 0.990 0.987 0.733 0.0
224133304528 predicted protein [Populus trichocarpa] 0.968 0.990 0.722 0.0
225460855536 PREDICTED: trigger factor isoform 1 [Vit 0.903 0.910 0.737 0.0
356552817545 PREDICTED: trigger factor-like [Glycine 0.988 0.979 0.686 0.0
356501570542 PREDICTED: trigger factor-like [Glycine 0.983 0.979 0.689 0.0
449503201538 PREDICTED: trigger factor-like protein T 0.925 0.929 0.727 0.0
449463242538 PREDICTED: trigger factor-like protein T 0.925 0.929 0.725 0.0
357494705561 Trigger factor [Medicago truncatula] gi| 0.905 0.871 0.698 0.0
22327852547 trigger factor type chaperone family pro 0.996 0.983 0.621 0.0
297792999551 trigger factor type chaperone family pro 0.875 0.858 0.691 0.0
>gi|255580756|ref|XP_002531199.1| Trigger factor, putative [Ricinus communis] gi|223529201|gb|EEF31176.1| Trigger factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/547 (73%), Positives = 465/547 (85%), Gaps = 12/547 (2%)

Query: 1   MELCITNSTRILNLNSLNRTGL----PL-SVSLKNSTVEFMN-QNYFNSQKLSSFSRQIH 54
           MELCI  S  +LN N      L    PL SV+L+   +EF N +N    QK+ S SRQ H
Sbjct: 1   MELCI-RSRLLLNWNQKQNLQLLGKRPLFSVTLRTQFLEFKNNKNLVCIQKVPSISRQTH 59

Query: 55  LYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAVCK 114
               +  F     +  A+S SSVA+GPEKD+LPADI+V ES EPNST+RL+VEVP AVC 
Sbjct: 60  ----RQAFVVCARKSAAASDSSVAVGPEKDKLPADIKVIESQEPNSTLRLTVEVPPAVCD 115

Query: 115 DSYKRVLNELMKQVKIPGFRPGK-IPESVLVGFVGEQNVKKATVESILKRTLPHAMTSVT 173
           D YKRV+NE MKQ KIPGFRPGK +PES+L+ +VG++NV+KATVES+LKRTLPHAM+SVT
Sbjct: 116 DCYKRVMNEFMKQAKIPGFRPGKNVPESILMSYVGKENVQKATVESVLKRTLPHAMSSVT 175

Query: 174 GRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDNDT 233
           GRAL+DSVRI TKFS+MEK+YSSLNSL YDV+VDVAPEVKW   N YKNLKIVVEID+D 
Sbjct: 176 GRALKDSVRIATKFSDMEKDYSSLNSLRYDVIVDVAPEVKWMSENAYKNLKIVVEIDSDI 235

Query: 234 AAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKG 293
            A +A+E+ELR R KSLG+LKIVTDRGLQ+GD+A++DISAT  DED+S VQNIPDAE+KG
Sbjct: 236 DALRASEKELRHRQKSLGALKIVTDRGLQIGDVAVIDISATKTDEDKSKVQNIPDAESKG 295

Query: 294 FHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYR 353
           FHFDTEDGDKVLPGFLDSI GIQRGETKSF L FPESW QE LRGV AQFTVEC+ELFYR
Sbjct: 296 FHFDTEDGDKVLPGFLDSIIGIQRGETKSFPLVFPESWNQESLRGVHAQFTVECKELFYR 355

Query: 354 DLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIP 413
           D+P+LDDSLA KL+PGCTT+++VKE+LLQ+C EVE++AKDQATDNAILDQL KMVE+DIP
Sbjct: 356 DVPELDDSLADKLVPGCTTLQEVKESLLQRCLEVERSAKDQATDNAILDQLCKMVEVDIP 415

Query: 414 QSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAV 473
           +SLFEEQGRQLYGA+LLQ+QA M+LNEQQLA+LSSPKAV EFLENQ+ENIT VIKQNLAV
Sbjct: 416 KSLFEEQGRQLYGARLLQIQANMRLNEQQLASLSSPKAVNEFLENQKENITKVIKQNLAV 475

Query: 474 GDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLREHA 533
           GDIFK ENLQFSTE+LVKEVENSIAE K+ KQEY+E+ VR+QV +ILEGAKVLEWLREHA
Sbjct: 476 GDIFKHENLQFSTEELVKEVENSIAEFKRHKQEYNEESVRDQVQEILEGAKVLEWLREHA 535

Query: 534 EIQYITR 540
           EIQY+TR
Sbjct: 536 EIQYVTR 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133304|ref|XP_002321534.1| predicted protein [Populus trichocarpa] gi|222868530|gb|EEF05661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225460855|ref|XP_002277545.1| PREDICTED: trigger factor isoform 1 [Vitis vinifera] gi|297737496|emb|CBI26697.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552817|ref|XP_003544759.1| PREDICTED: trigger factor-like [Glycine max] Back     alignment and taxonomy information
>gi|356501570|ref|XP_003519597.1| PREDICTED: trigger factor-like [Glycine max] Back     alignment and taxonomy information
>gi|449503201|ref|XP_004161884.1| PREDICTED: trigger factor-like protein TIG-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463242|ref|XP_004149343.1| PREDICTED: trigger factor-like protein TIG-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357494705|ref|XP_003617641.1| Trigger factor [Medicago truncatula] gi|355518976|gb|AET00600.1| Trigger factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|22327852|ref|NP_200333.2| trigger factor type chaperone family protein [Arabidopsis thaliana] gi|75160622|sp|Q8S9L5.1|TIG_ARATH RecName: Full=Trigger factor-like protein TIG; AltName: Full=Immunophilin TIG; AltName: Full=Peptidyl-prolyl cis-trans isomerase TIG; Short=PPIase TIG; AltName: Full=Rotamase gi|18650596|gb|AAL75898.1| AT5g55220/MCO15_17 [Arabidopsis thaliana] gi|25141197|gb|AAN73293.1| At5g55220/MCO15_17 [Arabidopsis thaliana] gi|332009218|gb|AED96601.1| trigger factor type chaperone family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297792999|ref|XP_002864384.1| trigger factor type chaperone family protein [Arabidopsis lyrata subsp. lyrata] gi|297310219|gb|EFH40643.1| trigger factor type chaperone family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query540
TAIR|locus:2161640547 AT5G55220 "AT5G55220" [Arabido 0.996 0.983 0.617 5.7e-178
TIGR_CMR|DET_0709448 DET_0709 "trigger factor" [Deh 0.496 0.598 0.246 3e-23
TIGR_CMR|CHY_0324427 CHY_0324 "trigger factor" [Car 0.677 0.857 0.245 5.4e-21
TIGR_CMR|BA_4705425 BA_4705 "trigger factor" [Baci 0.603 0.767 0.235 5.1e-16
TIGR_CMR|GSU_1793431 GSU_1793 "trigger factor" [Geo 0.592 0.742 0.242 4.3e-15
UNIPROTKB|P0A850432 tig "trigger factor; a molecul 0.570 0.712 0.223 6.1e-14
UNIPROTKB|Q9KQS5433 tig "Trigger factor" [Vibrio c 0.411 0.512 0.252 1.1e-13
TIGR_CMR|VC_1923433 VC_1923 "trigger factor" [Vibr 0.411 0.512 0.252 1.1e-13
TIGR_CMR|SO_1793434 SO_1793 "trigger factor" [Shew 0.481 0.599 0.258 1.2e-13
TIGR_CMR|CJE_0186444 CJE_0186 "trigger factor" [Cam 0.479 0.583 0.230 8.3e-12
TAIR|locus:2161640 AT5G55220 "AT5G55220" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 339/549 (61%), Positives = 443/549 (80%)

Query:     1 MELCITNST---RILN--LNSLNRTGLPLSVSLKNSTVEF---MNQNYFNSQKLSSFSRQ 52
             MELC+ ++T   + +N  L S+ R  +   +   +S ++F   + +       +S  SR+
Sbjct:     1 MELCVISTTTTVKAINPFLPSITRR-VSSRLFQSDSVLQFGGRLKKPISRPLDMSCVSRK 59

Query:    53 IHLYLHQPQFHRSPVRIFASSSSSVALGPEKDRLPADIEVTESPEPNSTVRLSVEVPEAV 112
             I  +      H    R+FA++S +V    ++D+LPAD++VTE+ + NS+V+LSVEVPE V
Sbjct:    60 IGFF-GDFMSHGGNFRLFAAASPAVETSVKEDKLPADLKVTETVQANSSVKLSVEVPEIV 118

Query:   113 CKDSYKRVLNELMKQVKIPGFRPG-KIPESVLVGFVGEQNVKKATVESILKRTLPHAMTS 171
             C+D Y+RVL E MK  K+PGFRP  ++PE+++VGFVG Q V +ATVESILKRTLPHAM S
Sbjct:   119 CEDCYQRVLTEFMKLSKVPGFRPKTRVPENIIVGFVGRQYVLRATVESILKRTLPHAMES 178

Query:   172 VTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVEIDN 231
             VTGRAL+DS++IV+ F +MEK YS L +LSY+V+VDV PE+KWNP +GYKN+K+VVE+ +
Sbjct:   179 VTGRALKDSIQIVSSFPDMEKAYSKLKTLSYEVVVDVVPELKWNPEDGYKNMKVVVELGD 238

Query:   232 DTXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAET 291
             +          LR+++KSLG+LKIVT+RGLQVGD+A+VDISATTIDED S  Q IPDAE+
Sbjct:   239 EIDAKKACERQLRQKYKSLGALKIVTERGLQVGDLAVVDISATTIDEDGSTGQAIPDAES 298

Query:   292 KGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELF 351
             KGFHFDTE+G+++LPGFLD+I GI+ GE+KSF L FPESW+QE LRG +AQFTV+C+ELF
Sbjct:   299 KGFHFDTEEGNRLLPGFLDAIIGIRAGESKSFTLVFPESWKQESLRGQRAQFTVDCKELF 358

Query:   352 YRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEID 411
             YRDLP LDDSLA KLLPGCTT+++V+ETL ++C+E+EQ AK+QATDNAIL+Q+ KMVE++
Sbjct:   359 YRDLPTLDDSLADKLLPGCTTLKEVEETLAKRCQEMEQEAKEQATDNAILEQIRKMVEVE 418

Query:   412 IPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNL 471
             IPQSLFEEQGRQ YGA+LL++Q  MKLNE QLA+LSS KAV EFLE QRE+ITN+IKQN+
Sbjct:   419 IPQSLFEEQGRQFYGARLLEIQGNMKLNEDQLASLSSQKAVNEFLETQRESITNIIKQNI 478

Query:   472 AVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEYDEDRVREQVIDILEGAKVLEWLRE 531
             AVGDIFKRENL+FST++LVKEVENSI+E K+ KQE+DE+RV++QV +ILEGAKVLEWL++
Sbjct:   479 AVGDIFKRENLEFSTDELVKEVENSISEFKKHKQEFDEERVKDQVQEILEGAKVLEWLKD 538

Query:   532 HAEIQYITR 540
              AEIQYITR
Sbjct:   539 RAEIQYITR 547
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015031 "protein transport" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
TIGR_CMR|DET_0709 DET_0709 "trigger factor" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0324 CHY_0324 "trigger factor" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4705 BA_4705 "trigger factor" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1793 GSU_1793 "trigger factor" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0A850 tig "trigger factor; a molecular chaperone involved in cell division" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KQS5 tig "Trigger factor" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1923 VC_1923 "trigger factor" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1793 SO_1793 "trigger factor" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0186 CJE_0186 "trigger factor" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8S9L5TIG_ARATH5, ., 2, ., 1, ., 80.62110.99620.9835yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
PRK01490435 PRK01490, tig, trigger factor; Provisional 1e-53
TIGR00115408 TIGR00115, tig, trigger factor 2e-51
COG0544441 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans 6e-46
pfam05698162 pfam05698, Trigger_C, Bacterial trigger factor pro 8e-22
pfam05697145 pfam05697, Trigger_N, Bacterial trigger factor pro 3e-16
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional Back     alignment and domain information 
 Score =  186 bits (476), Expect = 1e-53
 Identities = 116/454 (25%), Positives = 210/454 (46%), Gaps = 41/454 (9%)

Query: 91  EVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQ 150
           +VT         RL++ VP    + +  + L +L K V+IPGFR GK+P  ++    GE 
Sbjct: 2   QVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVRIPGFRKGKVPRKIVEQRYGES 61

Query: 151 NVKKATVESILKRTLPHAMTSVTGRAL-RDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVA 209
            V++  +  +L      A+     R   +  +       E EK       L +   V+V 
Sbjct: 62  -VRQEALNDLLPEAYEEAIKEEGIRPAGQPEIEPT----EEEKG----KDLEFTAEVEVY 112

Query: 210 PEVKWNPGNGYKNLKI---VVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDI 266
           PEV+      YK L++   VVE+ +         E LR++  +L    +  +R  + GD 
Sbjct: 113 PEVEL---GDYKGLEVEKPVVEVTD--EDVDEELERLRKQFATL----VPVERPAENGDR 163

Query: 267 AIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLA 326
             +D    +ID +E         + + F  +   G + +PGF + + G++ GE K+  + 
Sbjct: 164 VTIDFVG-SIDGEE-----FEGGKAEDFSLELGSG-RFIPGFEEQLVGMKAGEEKTIDVT 216

Query: 327 FPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKC-R 385
           FPE +  E L G +A F V  +E+  ++LP+LDD  A KL     T+E++K  + +   R
Sbjct: 217 FPEDYHAEDLAGKEATFKVTVKEVKEKELPELDDEFAKKLGEF-ETLEELKADIRKNLER 275

Query: 386 EVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAA 445
           E ++  + +  + A+LD L +  EID+P++L E++       +LL+      L+ +    
Sbjct: 276 EKKEAQRAKVKE-AVLDALVENAEIDLPEALVEQEID-----RLLRQALQQGLDLEGQFL 329

Query: 446 LSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQ 505
             +    +E  E  RE     +K  L + +I K E ++ S E++  E+E   ++  Q  +
Sbjct: 330 EDTGTTEEEPREEFREQAERRVKLGLLLDEIAKAEEIEVSDEEVKAEIEEMASQYGQPPE 389

Query: 506 EYDEDRVREQVIDILEGA----KVLEWLREHAEI 535
             +      Q++  L       KV+++L E A++
Sbjct: 390 VIEFYLKNPQLLAALRADVLEEKVVDFLLEKAKV 423

Length = 435
>gnl|CDD|232831 TIGR00115, tig, trigger factor Back     alignment and domain information
>gnl|CDD|223618 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|218701 pfam05698, Trigger_C, Bacterial trigger factor protein (TF) C-terminus Back     alignment and domain information
>gnl|CDD|218700 pfam05697, Trigger_N, Bacterial trigger factor protein (TF) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 540
COG0544441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 100.0
PRK01490435 tig trigger factor; Provisional 100.0
TIGR00115408 tig trigger factor. Trigger factor is a ribosome-a 100.0
PF05697145 Trigger_N: Bacterial trigger factor protein (TF); 99.96
PF05698162 Trigger_C: Bacterial trigger factor protein (TF) C 99.85
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.07
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 98.81
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 98.8
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 98.74
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 98.45
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.42
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 98.41
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 98.41
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.39
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.21
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 97.97
PRK10770 413 peptidyl-prolyl cis-trans isomerase SurA; Provisio 95.9
PRK00059 336 prsA peptidylprolyl isomerase; Provisional 95.31
PRK00059 336 prsA peptidylprolyl isomerase; Provisional 94.58
PF09312118 SurA_N: SurA N-terminal domain; InterPro: IPR01539 93.26
TIGR02933256 nifM_nitrog nitrogen fixation protein NifM. Member 92.27
PRK03095 287 prsA peptidylprolyl isomerase; Reviewed 92.17
PRK12450 309 foldase protein PrsA; Reviewed 91.89
PRK04405 298 prsA peptidylprolyl isomerase; Provisional 91.56
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 91.08
PRK01326 310 prsA foldase protein PrsA; Reviewed 90.83
PRK01326 310 prsA foldase protein PrsA; Reviewed 90.57
PRK04980102 hypothetical protein; Provisional 90.38
PRK12450 309 foldase protein PrsA; Reviewed 90.14
PRK02998 283 prsA peptidylprolyl isomerase; Reviewed 89.97
PRK10788 623 periplasmic folding chaperone; Provisional 89.27
cd06552100 ASCH_yqfb_like ASC-1 homology domain, subfamily si 88.07
PRK03095 287 prsA peptidylprolyl isomerase; Reviewed 87.23
PRK03002 285 prsA peptidylprolyl isomerase; Reviewed 86.89
TIGR02933 256 nifM_nitrog nitrogen fixation protein NifM. Member 86.81
PRK10770 413 peptidyl-prolyl cis-trans isomerase SurA; Provisio 86.58
PRK04405 298 prsA peptidylprolyl isomerase; Provisional 86.56
PRK02998 283 prsA peptidylprolyl isomerase; Reviewed 84.11
PF13624154 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A. 83.13
PRK03002 285 prsA peptidylprolyl isomerase; Reviewed 82.85
PRK10788 623 periplasmic folding chaperone; Provisional 82.07
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 80.79
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-77  Score=633.33  Aligned_cols=416  Identities=26%  Similarity=0.440  Sum_probs=374.0

Q ss_pred             ceEEEeecCCceeEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 009190           90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM  169 (540)
Q Consensus        90 m~vt~~~~~~~~~~l~v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~~~i~~e~~e~li~~~~~~ai  169 (540)
                      |+|++++++++.++++|+||++.++.++++++++++|+++||||||||||++||+++|| .+|++++++++++++|.+++
T Consensus         1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~IpGFRkGKvP~~ii~~ryg-~~v~~d~~~~ll~~~~~~a~   79 (441)
T COG0544           1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVKIPGFRKGKVPRKVIEQRYG-EAVRQDVLNELLPEAFEEAI   79 (441)
T ss_pred             CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCcCCCCCCCCCCHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999 58999999999999999999


Q ss_pred             HhhhcccCCcccccccccchhhhccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe----cchhhHHHHHHHHHHHH
Q 009190          170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRR  245 (540)
Q Consensus       170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~~ev~Pevel~~~~~yk~i~v~~~----~dedid~~~~~e~~L~~  245 (540)
                      .+.++.|+++|. +    .  ...++++++|+|++.|+|+|+|+++   ||++|+|+++    ++++|+      +.|+.
T Consensus        80 ~e~~~~~~~~p~-~----~--~~~~e~~~~~~f~~~~ev~Pev~l~---d~~~i~v~~~~~ev~d~dvd------~~L~~  143 (441)
T COG0544          80 KEEGLKPAGQPE-I----E--ITEFEKGEDFEFTAEVEVYPEVELG---DYKGIEVEKPVVEVTDEDVD------EELEK  143 (441)
T ss_pred             HHhCcCcCCCCC-c----c--cccccCCCceEEEEEEEEeeceecC---ccccceeecCCcccCHHHHH------HHHHH
Confidence            999999998762 1    1  1357788899999999999999996   9999999987    244554      47888


Q ss_pred             HHhhcCcccccccCCcccccEEEEEEEEEeeccCCCCCcccCCCCcCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEe
Q 009190          246 RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL  325 (540)
Q Consensus       246 ~~~~~~~~~~v~dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v  325 (540)
                      +++++++|.++.++ ++.||+|+|||.|+      .||++|+|++++||.|.+| +++|||||+++|+|||+||+++|++
T Consensus       144 l~~~~a~~~~~e~~-a~~gD~v~IDf~g~------iDg~~fegg~ae~~~l~lG-s~~fipgFe~~LvG~k~Ge~k~i~v  215 (441)
T COG0544         144 LRKRFATLEPVEGA-AENGDRVTIDFEGS------VDGEEFEGGKAENFSLELG-SGRFIPGFEDQLVGMKAGEEKDIKV  215 (441)
T ss_pred             HHHhcCcccccccc-cccCCEEEEEEEEE------EcCeeccCccccCeEEEEc-CCCchhhHHhhhccCcCCCeeEEEE
Confidence            99999999886545 99999999999998      7899999999999999999 5799999999999999999999999


Q ss_pred             cCCCCcccccCCCceeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009190          326 AFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLY  405 (540)
Q Consensus       326 ~fPedy~~~~laGk~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~  405 (540)
                      +||++||.++|+||.++|+|||++|+++++||||||||++++... |+++||+.+|++|+.+++....+..+++++++|.
T Consensus       216 tFP~dy~a~~LaGK~a~F~V~vkeVk~~elpEldDEfAk~~~~~~-tL~~Lk~~~r~~le~~~~~~~~~~~~~~~~~~L~  294 (441)
T COG0544         216 TFPEDYHAEELAGKEATFKVKVKEVKKRELPELDDEFAKKLGEED-TLEELKEKLRKNLERELKEATLEKRKEQLLDALV  294 (441)
T ss_pred             EcccccchhHhCCCceEEEEEEEEEeecCCCCCCHHHHHhcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999996444 9999999999999999999999999999999999


Q ss_pred             HhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009190          406 KMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFS  485 (540)
Q Consensus       406 e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~Vs  485 (540)
                      +.+.|++|++||++++++++++...++ +++|++.  + .. ++.+.+++++++++.|+++||.+|+|++||+.++|+||
T Consensus       295 e~~~~dlP~sli~~E~~~l~~~~~~~l-~~~~~~~--~-~~-~~~~~~~~~e~~~~~A~krVk~~Lil~~ia~~~~i~v~  369 (441)
T COG0544         295 EANDFDLPESLVEAEIDNLLKQALQQL-QQQGIDS--L-EA-SGESEEELREEFKEEAEKRVKLGLLLEEIAKEEKLEVT  369 (441)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHHH-Hhcccch--h-hh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence            999999999999999999999999999 4678775  1 12 23467899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-----hhh-hccHHHHHHHHHHHHHHHHHHHHHHHh-Ceee
Q 009190          486 TEDLVKEVENSIAELKQ-----QKQ-EYDEDRVREQVIDILEGAKVLEWLREH-AEIQ  536 (540)
Q Consensus       486 eeEi~~ei~~~~~~~~~-----~~~-~~~~~~~~~~i~~~l~~~Kvld~L~e~-aki~  536 (540)
                      +++|++++..++++|..     ... .+........++..++.+|++++++.+ ++++
T Consensus       370 ~eei~~~i~~~a~~y~~~~~~e~~~~~~~~~~~~~~~k~~~~~~k~v~~~~~~~~~~~  427 (441)
T COG0544         370 EEEIKAEIEELARQYGGEQPEEVIKLYYNNQELLDALKADILEEKAVDLLLANKKKVT  427 (441)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            99999999999987632     111 123445566788899999999999994 4443

>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state Back     alignment and domain information
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional Back     alignment and domain information
>PRK00059 prsA peptidylprolyl isomerase; Provisional Back     alignment and domain information
>PRK00059 prsA peptidylprolyl isomerase; Provisional Back     alignment and domain information
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA [] Back     alignment and domain information
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM Back     alignment and domain information
>PRK03095 prsA peptidylprolyl isomerase; Reviewed Back     alignment and domain information
>PRK12450 foldase protein PrsA; Reviewed Back     alignment and domain information
>PRK04405 prsA peptidylprolyl isomerase; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01326 prsA foldase protein PrsA; Reviewed Back     alignment and domain information
>PRK01326 prsA foldase protein PrsA; Reviewed Back     alignment and domain information
>PRK04980 hypothetical protein; Provisional Back     alignment and domain information
>PRK12450 foldase protein PrsA; Reviewed Back     alignment and domain information
>PRK02998 prsA peptidylprolyl isomerase; Reviewed Back     alignment and domain information
>PRK10788 periplasmic folding chaperone; Provisional Back     alignment and domain information
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb Back     alignment and domain information
>PRK03095 prsA peptidylprolyl isomerase; Reviewed Back     alignment and domain information
>PRK03002 prsA peptidylprolyl isomerase; Reviewed Back     alignment and domain information
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM Back     alignment and domain information
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional Back     alignment and domain information
>PRK04405 prsA peptidylprolyl isomerase; Provisional Back     alignment and domain information
>PRK02998 prsA peptidylprolyl isomerase; Reviewed Back     alignment and domain information
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A Back     alignment and domain information
>PRK03002 prsA peptidylprolyl isomerase; Reviewed Back     alignment and domain information
>PRK10788 periplasmic folding chaperone; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
1t11_A392 Trigger Factor Length = 392 1e-12
1w26_A432 Trigger Factor In Complex With The Ribosome Forms A 2e-12
1l1p_A106 Solution Structure Of The Ppiase Domain From E. Col 3e-05
2d3o_1112 Structure Of Ribosome Binding Domain Of The Trigger 9e-05
2aar_7113 Structure Of Trigger Factor Binding Domain In Biolo 9e-05
3gty_X433 Promiscuous Substrate Recognition In Folding And As 7e-04
3gu0_A412 Promiscuous Substrate Recognition In Folding And As 8e-04
>pdb|1T11|A Chain A, Trigger Factor Length = 392 Back     alignment and structure 
Iteration: 1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 170/392 (43%), Gaps = 43/392 (10%)
Query: 103 RLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILK 162
           RL++ VP A  +D+    L  + K  +  GFR GK+P  ++    G + V++  +  +++
Sbjct: 17  RLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYG-KAVRQDVLGEVMQ 75
Query: 163 RTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKN 222
           R   H + ++    +  +      F+ +E        L +    +V PEV+     G +N
Sbjct: 76  R---HFIEAIVKEKINPAG--APTFAPVE--IGEGKDLVFTATFEVYPEVEL---KGLEN 125
Query: 223 LKI---VVEI-DNDTXXXXXXXXXLRRRHKSLGSLKIVTDRGLQVGDIAIVDISATTIDE 278
           + +     E+ D D          LR++  +   +    + G +V  I  V  S   ++ 
Sbjct: 126 IAVEKPAAEVTDADV---AEMLETLRKQQATWKEVDEAAENGKRV-SIDFVG-SIDGVEF 180
Query: 279 DESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRG 338
           +    +N P     G         +++PGF D I G  +G      + FPE +  E+L+G
Sbjct: 181 EGGKAENFPLEMGAG---------RMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLKG 231
Query: 339 VQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKC-REVEQTAKDQATD 397
             A+F ++  ++  R+LP+L+D    +       ++ +K  + +   RE++Q  K +  +
Sbjct: 232 KAAKFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKE 291
Query: 398 NAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLE 457
            AI + L K  EI +P +L +++        +L+ QA  +      AA   P   +E  E
Sbjct: 292 QAI-EGLVKENEIQVPSALIDQE------INVLRQQAAQRFGGNVEAAAQLP---RELFE 341
Query: 458 NQRENITNVIKQNLAVGDIFKRENLQFSTEDL 489
            Q +    V    L +G++ +   L+   E +
Sbjct: 342 EQAKRRVVV---GLLLGEVIRTHELKADEEKV 370
>pdb|1W26|A Chain A, Trigger Factor In Complex With The Ribosome Forms A Molecular Cradle For Nascent Proteins Length = 432 Back     alignment and structure
>pdb|1L1P|A Chain A, Solution Structure Of The Ppiase Domain From E. Coli Trigger Factor Length = 106 Back     alignment and structure
>pdb|2D3O|1 Chain 1, Structure Of Ribosome Binding Domain Of The Trigger Factor On The 50s Ribosomal Subunit From D. Radiodurans Length = 112 Back     alignment and structure
>pdb|2AAR|7 Chain 7, Structure Of Trigger Factor Binding Domain In Biologically Homologous Complex With Eubacterial Ribosome Length = 113 Back     alignment and structure
>pdb|3GTY|X Chain X, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 433 Back     alignment and structure
>pdb|3GU0|A Chain A, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 412 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query540
1w26_A432 Trigger factor, TF; chaperone, protein folding, ri 2e-46
1t11_A392 Trigger factor, TF; helix-turn-helix, four-helix-b 3e-44
3gty_X433 Trigger factor, TF; chaperone-client complex, cell 2e-42
2d3o_1112 Trigger factor, TF; ribosome, nascent chain, prote 9e-14
2nsa_A170 Trigger factor, TF; chaperone; 1.70A {Thermotoga m 1e-12
2nsc_A109 Trigger factor, TF; chaperone; 2.20A {Thermotoga m 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1p9y_A121 Trigger factor, TF; alpha-beta protein, isomerase; 6e-11
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 1e-08
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Length = 432 Back     alignment and structure
 Score =  167 bits (424), Expect = 2e-46
 Identities = 78/452 (17%), Positives = 183/452 (40%), Gaps = 43/452 (9%)

Query: 91  EVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQ 150
           +V+         R+++ +     + + K  L  + K+V+I GFR GK+P +++    G  
Sbjct: 2   QVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGAS 61

Query: 151 NVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAP 210
            V++  +  ++ R    A   +    +  +        E +         +Y V  +V P
Sbjct: 62  -VRQDVLGDLMSRNFIDA---IIKEKINPAGAPTYVPGEYKLG----EDFTYSVEFEVYP 113

Query: 211 EVKWNPGNGYKNLKI---VVEIDNDTAAQQAAEEELRRRHKSLGSLKIVTDRGLQVGDIA 267
           EV+     G + +++   +VE+ +  A      + LR++  +        D  ++  D  
Sbjct: 114 EVELQ---GLEAIEVEKPIVEVTD--ADVDGMLDTLRKQQATW----KEKDGAVEAEDRV 164

Query: 268 IVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAF 327
            +D + + +D +E         +   F      G +++PGF D I G + GE  +  + F
Sbjct: 165 TIDFTGS-VDGEE-----FEGGKASDFVLAMGQG-RMIPGFEDGIKGHKAGEEFTIDVTF 217

Query: 328 PESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREV 387
           PE +  E+L+G  A+F +  +++  R+LP+L      +      ++E ++  + +     
Sbjct: 218 PEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERE 277

Query: 388 EQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALS 447
            ++A      +  ++ L K  +ID+P +L + +   L      +     K   +    L 
Sbjct: 278 LKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPRELF 337

Query: 448 SPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKQEY 507
             +A +             +   L +G++ +   L+   E +   +E   +  +  K+  
Sbjct: 338 EEQAKRR------------VVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVI 385

Query: 508 DEDRVREQVIDILEGA----KVLEWLREHAEI 535
           +     ++++D +       + +E +   A++
Sbjct: 386 EFYSKNKELMDNMRNVALEEQAVEAVLAKAKV 417
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Length = 392 Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Length = 433 Back     alignment and structure
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Length = 112 Back     alignment and structure
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} Length = 170 Back     alignment and structure
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A* Length = 121 Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Length = 113 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
1w26_A432 Trigger factor, TF; chaperone, protein folding, ri 100.0
1t11_A392 Trigger factor, TF; helix-turn-helix, four-helix-b 100.0
3gty_X433 Trigger factor, TF; chaperone-client complex, cell 100.0
1p9y_A121 Trigger factor, TF; alpha-beta protein, isomerase; 99.96
2d3o_1112 Trigger factor, TF; ribosome, nascent chain, prote 99.94
2nsc_A109 Trigger factor, TF; chaperone; 2.20A {Thermotoga m 99.93
2nsa_A170 Trigger factor, TF; chaperone; 1.70A {Thermotoga m 99.83
1zxj_A218 MPN555, hypothetical protein Mg377 homolog; mostly 99.79
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.76
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.41
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.32
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.3
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.27
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.27
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.23
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.22
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.21
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.21
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.17
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.12
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.11
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.1
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.1
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.08
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.08
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.06
3prb_A231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.06
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.05
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.05
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.05
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.05
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.03
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.0
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 98.99
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 98.96
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 98.95
1fd9_A213 Protein (macrophage infectivity potentiator prote; 98.94
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 98.9
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 98.89
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 98.85
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 98.84
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.82
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 98.78
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.78
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 98.55
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 98.5
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 95.43
3rgc_A252 Possible periplasmic protein; ppiase, chaperone; 2 92.36
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 90.6
1m5y_A 408 SurviVal protein, surviVal protein SURA; surviVal 87.87
3rgc_A 252 Possible periplasmic protein; ppiase, chaperone; 2 87.84
3nrk_A 325 LIC12922; NC domain, parvulin domain, SURA homolog 86.88
1m5y_A 408 SurviVal protein, surviVal protein SURA; surviVal 83.74
3nrk_A 325 LIC12922; NC domain, parvulin domain, SURA homolog 80.67
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
Probab=100.00  E-value=6.2e-77  Score=636.53  Aligned_cols=413  Identities=18%  Similarity=0.315  Sum_probs=366.8

Q ss_pred             ceEEEeecCCceeEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 009190           90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM  169 (540)
Q Consensus        90 m~vt~~~~~~~~~~l~v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~~~i~~e~~e~li~~~~~~ai  169 (540)
                      |+|+++++++++++|+|+||+++++.+++++|++++++++||||||||||++||+++||. +|+.++++++++++|.+|+
T Consensus         1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~~~yG~-~v~~ea~~~~~~~~~~~ai   79 (432)
T 1w26_A            1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA-SVRQDVLGDLMSRNFIDAI   79 (432)
T ss_dssp             CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTTCGGGCCSSSCHHHHHHHHCT-TTHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999996 7999999999999999999


Q ss_pred             HhhhcccCCcccccccccchhhhccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe----cchhhHHHHHHHHHHHH
Q 009190          170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE----IDNDTAAQQAAEEELRR  245 (540)
Q Consensus       170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~~ev~Pevel~~~~~yk~i~v~~~----~dedid~~~~~e~~L~~  245 (540)
                      ++.+++|+++|. +.  .    ..+.++++|+|+++|+|+|+|+|+   +|++++|+++    ++++|++      .|.+
T Consensus        80 ~e~~l~~~~~P~-i~--~----~~~~~~~~~~f~~~~~v~Pev~l~---~y~~l~v~~~~~eVtde~Vd~------~l~~  143 (432)
T 1w26_A           80 IKEKINPAGAPT-YV--P----GEYKLGEDFTYSVEFEVYPEVELQ---GLEAIEVEKPIVEVTDADVDG------MLDT  143 (432)
T ss_dssp             HHSCCCEEEEEE-EE--E----CCCCTTSCEEEEEEEEECCCCCCC---CTTTCBCCEEECCCCHHHHHH------HHHH
T ss_pred             HhcCCCCCCCCC-cc--c----cccCCCCcEEEEEEeccCCCeecC---CCCceEEEecCCCcCHHHHHH------HHHH
Confidence            999999998752 21  1    246778999999999999999996   8999998876    3566665      5778


Q ss_pred             HHhhcCcccccccCCcccccEEEEEEEEEeeccCCCCCcccCCCCcCCeEEEecCCCCCCcchHHhhcCCCCCceEEEEe
Q 009190          246 RHKSLGSLKIVTDRGLQVGDIAIVDISATTIDEDESNVQNIPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRL  325 (540)
Q Consensus       246 ~~~~~~~~~~v~dr~~~~GD~V~id~~~~~~d~d~~~G~~~~~~~~~~~~l~lg~~~~~ip~fe~~LiG~k~Ge~~~~~v  325 (540)
                      +++++++|.+ .+++++.||+|+|||+|+      .+|+.|+++...++.|.+|. +.++|||+++|+||++|++++|.+
T Consensus       144 l~~~~a~~~~-~~~~~~~gD~V~i~y~g~------~dG~~fd~~~~~~~~~~lG~-g~~ipgfee~L~G~k~Ge~~~v~v  215 (432)
T 1w26_A          144 LRKQQATWKE-KDGAVEAEDRVTIDFTGS------VDGEEFEGGKASDFVLAMGQ-GRMIPGFEDGIKGHKAGEEFTIDV  215 (432)
T ss_dssp             HHHHTCEECC-CSSCCCTTCEEEECEEEE------SSSCBCSSCCCSSEEEETTS-CCSCTTHHHHSSSCCSSCEEEEEE
T ss_pred             HHHhCCeeee-cCCCCCCCCEEEEEEEEe------eCCeEccCCCccceEEEeCC-CCcchHHHHHhCCCCCCCEEEEEE
Confidence            8888898886 488999999999999998      68999999989999999994 689999999999999999999999


Q ss_pred             cCCCCcccccCCCceeEEEEEEEEeeecCCCCCChHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009190          326 AFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLY  405 (540)
Q Consensus       326 ~fPedy~~~~laGk~v~F~VtVk~Ik~~~lPELdDEfak~l~~~~~tleelk~~Ire~l~~~~~~~~~~~~~~~il~~L~  405 (540)
                      +||++|+..+++|+++.|+|+|++|+++++||||||||+.++++++|+++||+.||++|+++++.++++.++++++++|+
T Consensus       216 ~~~~~yg~~~lag~~~~F~V~v~~v~~~~lpeldDEfak~~~~~~~tleelk~~ir~~l~~~~~~~~~~~~~~~v~~~l~  295 (432)
T 1w26_A          216 TFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLV  295 (432)
T ss_dssp             ECCTTCSCTTTSSCEEEEEEECCEECCEECCCCSHHHHTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhCCCCCCCceEEEEEEEEEEeccCCCCcchHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988546999999999999999999999999999999999999


Q ss_pred             HhcCcCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009190          406 KMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQRENITNVIKQNLAVGDIFKRENLQFS  485 (540)
Q Consensus       406 e~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~ee~~e~~~~~a~~~vK~~Lil~~Ia~~enI~Vs  485 (540)
                      ++++|++|++||+++++++++++..++ .++|++.  +         +...+.++++|+++||++|||++||+++||+||
T Consensus       296 e~~~~~lP~~lv~~e~~~~~~~~~~~l-~~~g~~~--~---------~~~~e~~~~~Ae~~vk~~Lil~~Ia~~e~i~vt  363 (432)
T 1w26_A          296 KANDIDVPAALIDSEIDVLRRQAAQRF-GGNEKQA--L---------ELPRELFEEQAKRRVVVGLLLGEVIRTNELKAD  363 (432)
T ss_dssp             HHCCCCCCHHHHHHHHHHHHHHHHTTT-TCCTTSS--T---------TSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HhCCCCCCHHHHHHHHHHHHHHHHHHH-HhcCcch--h---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999988887 4556321  1         111334589999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh---h-hhccHHHHHHHHHHHHHHHHHHHHHHHhCeeeeec
Q 009190          486 TEDLVKEVENSIAELKQQ---K-QEYDEDRVREQVIDILEGAKVLEWLREHAEIQYIT  539 (540)
Q Consensus       486 eeEi~~ei~~~~~~~~~~---~-~~~~~~~~~~~i~~~l~~~Kvld~L~e~aki~e~~  539 (540)
                      ++|+++++.+++++|...   . ..+.+.+....++..++++||++||+++|++++++
T Consensus       364 ~eev~~~i~~~a~~y~~~~~~~~~~~~~~~~~~~l~~~i~~~K~~~~l~~~a~v~~~~  421 (432)
T 1w26_A          364 EERVKGLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEKE  421 (432)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTSBCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCcccccC
Confidence            999999999988664310   0 11122334567888999999999999999998764
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A* Back     alignment and structure
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Back     alignment and structure
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Back     alignment and structure
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} Back     alignment and structure
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Back     alignment and structure
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} Back     alignment and structure
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} Back     alignment and structure
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Back     alignment and structure
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 540
d1t11a2129 d.241.2.1 (A:1-129) Trigger factor ribosome-bindin 3e-14
d1t11a3113 d.26.1.1 (A:135-247) Trigger factor PPIase domain 3e-13
d1l1pa_106 d.26.1.1 (A:) Trigger factor PPIase domain {Escher 8e-13
d1p9ya_117 d.241.2.1 (A:) Trigger factor ribosome-binding dom 4e-12
d1w26a1185 a.223.1.1 (A:248-432) Trigger factor, C-terminal d 3e-09
d1t11a1129 a.223.1.1 (A:248-376) Trigger factor, C-terminal d 3e-08
d1hxva_85 d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl 5e-06
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]} Length = 129 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

 Score = 67.7 bits (165), Expect = 3e-14
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 91  EVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQ 150
           +VT         RL++ VP A  +D+    L  + K  +  GFR GK+P  ++    G+ 
Sbjct: 2   QVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGKA 61

Query: 151 NVKKATVESILKRTLPHAMTSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAP 210
            V++  +  +++R    A+                +  E +        L +    +V P
Sbjct: 62  -VRQDVLGEVMQRHFIEAIVKEKINPAGAPTFAPVEIGEGK-------DLVFTATFEVYP 113

Query: 211 EVKWNPGNGYKNLKI 225
           EV+     G +N+ +
Sbjct: 114 EVEL---KGLENIAV 125
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Length = 113 Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 185 Back     information, alignment and structure
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]} Length = 129 Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query540
d1t11a2129 Trigger factor ribosome-binding domain {Vibrio cho 99.96
d1p9ya_117 Trigger factor ribosome-binding domain {Escherichi 99.95
d1w26a1185 Trigger factor, C-terminal domain {Escherichia col 99.93
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 99.92
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 99.91
d1t11a1129 Trigger factor, C-terminal domain {Vibrio cholerae 99.81
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.79
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 98.86
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 98.55
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 98.47
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 98.46
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 98.45
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 98.4
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 98.25
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 98.16
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 98.12
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 98.1
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 98.01
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 97.92
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 97.85
d1m5ya1173 Porin chaperone SurA, peptide-binding domain {Esch 94.03
d1m5ya1173 Porin chaperone SurA, peptide-binding domain {Esch 92.88
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.96  E-value=7.1e-29  Score=220.37  Aligned_cols=128  Identities=22%  Similarity=0.384  Sum_probs=118.9

Q ss_pred             ceEEEeecCCceeEEEEEEchhhHHHHHHHHHHHHHhhCCCCCCCCCCCcHHHHHHhhChHHHHHHHHHHHHHhhHHHHH
Q 009190           90 IEVTESPEPNSTVRLSVEVPEAVCKDSYKRVLNELMKQVKIPGFRPGKIPESVLVGFVGEQNVKKATVESILKRTLPHAM  169 (540)
Q Consensus        90 m~vt~~~~~~~~~~l~v~v~~~~v~~~~~k~l~~~~k~~~IpGFRkGKvP~~vi~k~~G~~~i~~e~~e~li~~~~~~ai  169 (540)
                      |+++++++++++++|+|+||+++|+.++++++++++++++||||||||||+++|+++||. ++..++++++++++|.+++
T Consensus         1 M~~~~~~~~~~~~~l~v~v~~~e~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~k~~~~-~i~~e~~~~~i~~~~~~~l   79 (129)
T d1t11a2           1 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK-AVRQDVLGEVMQRHFIEAI   79 (129)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEcCCcEEEEEEEECHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhhh-hHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999997 7999999999999999999


Q ss_pred             HhhhcccCCcccccccccchhhhccCCCCceEEEEEEEeecccccCCCCCCceeEEEEe
Q 009190          170 TSVTGRALRDSVRIVTKFSEMEKNYSSLNSLSYDVLVDVAPEVKWNPGNGYKNLKIVVE  228 (540)
Q Consensus       170 ~e~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~f~v~~ev~Pevel~~~~~yk~i~v~~~  228 (540)
                      ++.++.|+++|.     +..  ..++++++|+|++.|+++|+|+++   +|++|+|+++
T Consensus        80 ~e~~i~~~~~p~-----i~~--~~~~~~~~~~~~~~~ev~Pei~l~---~y~~l~v~kP  128 (129)
T d1t11a2          80 VKEKINPAGAPT-----FAP--VEIGEGKDLVFTATFEVYPEVELK---GLENIAVEKP  128 (129)
T ss_dssp             HHTTCCBSSCCE-----EEE--EECCTTSCEEEEEEEEBCCCCCCT---TCTTCEEESS
T ss_pred             HhcccCcccCCC-----cCc--ccccCCCcEEEEEEEEEcCccccC---CcCccEeecC
Confidence            999999998752     221  357788999999999999999996   9999998864
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure