Citrus Sinensis ID: 009194

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540
Protein Sequence
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVFFH
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccEEEcccccccccccccccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccccEEEcccccccccEEcccccccHHHHcccccccEEEEEEcccccccccccccccccEEEEEccccccccccccccccccHHHHccccccccccccccccccccccccccEEcccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEcccccccHHHccccccccccccccEEEEccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccEEEEEccccccEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccEEEEcccccccccccHHcccEEEEEEccccHHHccccccccccEEEEEEccccccccccHHHHHHccccEEEEccccccccccccHHHHHcccEEEccccccccccHHHHHcccEEEEcccccHHHccHHHHHHHcccEEEccccccccEccHHHHHHHHcccEEEEccccccEcccccccHHHHHHHHHHccccEEEEEEcccHHcccHcccccHcccEEEEccEEcccccccccccHHHHHHHHHHHHHccccccHHHHHHccccccEEEEcccccccccccccccccccccccEEEEcccHHHHHHHcccccccccHcccccEEEEcccHHHHHHHcccccccccccccEEEEEcccHHHHHcccHHHHHHcccccEEEEcccHcHHHccccccccccccccccEEEEccccccccccccccccEEEEcccHHHcccccccHHHHHHcccEEEEcccccHEEEEcccccccccccEEccccccccHcccHcHHHccccccEcccHHHHHHEcccccccc
Coil and Loop (DISEMBL)
MHDVIHVVAVSIAteermfnvpnvaDLEKKMEETIqkdpiaislphrdiqelperlqcpnlqlfllytegngpmqvsdhffegmeglkvlqfpgigssslpssLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNinqlpveigqLTRLQlldlsncwwleviapnVISKLSQLEELymgngfsgwekveggsnasLVELERLtelttleievpdaeilppdfvsVELQRYKirigdgpedefdpllVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVhelddgegfprlkRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRedqsfsnlriinvDSCRKLKYLFSFSMAKNLLRLqkvkvedcddlkmiigpdmekppttqgfieinaeddpvhqgiyccqnltkvtvwscHRLKYLFSYSMVNSLGQLQHLEIRNcrsiegvvntttlggrdefkvfpklhylslhwlpklssfaspedvihtemqpqslfdekvffh
Flexible Loop (DISEMBL)
MHDVIHVVAvsiateermfnvpNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTtleievpdaeilppdfvSVELQRYKIRigdgpedefdpLLVKSEASRLMMLKGIKKvsilqendgTKMLLQRTEDLWLETLEGVQSVVHelddgegfprLKRLLVTDCSEILhivgsvrrvrCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSmaknllrlqkVKVEDCDDLKMiigpdmekppTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVntttlggrdeFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEmqpqslfdekvffh
Low Complexity Region (SEG)
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFpgigssslpsslgrliNLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASlvelerltelttleieVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVFFH
Disordered region (IsUnstruct)
***VIHVVAVSIATEERMFNVPNVADL***********PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPD******TQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFA***********************
Disordered Region (DISOPRED)
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV*****ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVN*********FKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVFFH
Disordered Region (DISEMBL)
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVFFH
Disordered Region (DISPRO)
*HDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKV***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVFFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	540	2.2.26 [Sep-21-2011]
O81825	919	Probable disease resistan	yes	no	0.822	0.483	0.265	9e-17
Q9T048	985	Disease resistance protei	no	no	0.729	0.4	0.256	1e-16
Q42484	909	Disease resistance protei	no	no	0.701	0.416	0.237	1e-15
Q6DHL5	238	Leucine-rich repeat-conta	yes	no	0.264	0.600	0.309	5e-06
Q7XA39	988	Putative disease resistan	N/A	no	0.168	0.092	0.365	9e-06
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.251	0.134	0.3	1e-05
Q80TH2	1402	Protein LAP2 OS=Mus muscu	yes	no	0.262	0.101	0.345	2e-05
Q96RT1	1412	Protein LAP2 OS=Homo sapi	no	no	0.251	0.096	0.342	2e-05
O35930	734	Platelet glycoprotein Ib	no	no	0.159	0.117	0.402	2e-05
A4IIK1	997	Malignant fibrous histioc	no	no	0.370	0.200	0.286	3e-05

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 224/505 (44%), Gaps = 61/505 (12%)

Query: 1   MHDVIHVVAV-SIATEERMFNVPNVADL------EKKMEETIQKDPIAISLPHRDIQELP 53
           MHDV+   A+  ++++   F+   +A        + K   ++Q+    +SL    ++ LP
Sbjct: 431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQR----VSLMANKLERLP 486

Query: 54  ERLQCPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT 112
             +    ++  +L  +GN  + +V + F +    L++L   G+   +LP S   L +L++
Sbjct: 487 NNV-IEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRS 545

Query: 113 LCLDWCE-LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP 171
           L L  C+ L ++ ++  L KL+ L L  S I +LP  +  L+ L+ + +SN + L+ I  
Sbjct: 546 LVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPA 605

Query: 172 NVISKLSQLEELYMGNGFSGW----EKVEGGSNASLVELERLTELTTLEIEVPDAEILPP 227
             I +LS LE L M      W    E+ EG   A+L E+  L  L  L I++ D      
Sbjct: 606 GTILQLSSLEVLDMAGSAYSWGIKGEEREG--QATLDEVTCLPHLQFLAIKLLDVLSFSY 663

Query: 228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287
           +F S+  +  K +        F P+   S          I  V++   N     LLQ   
Sbjct: 664 EFDSLTKRLTKFQF------LFSPIRSVSPPGTGEGCLAISDVNV--SNASIGWLLQHVT 715

Query: 288 DLWLETLEGVQSVVHEL--DDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345
            L L   EG+  +   L       F  +K L +     +    G   ++  ++FP LE L
Sbjct: 716 SLDLNYCEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCESQL--DLFPNLEEL 773

Query: 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS-MAKNLLRLQKVKVEDC 404
           SL  + NLE+I             L+++ V  CR+LK LFS   +A  L  LQ++KV  C
Sbjct: 774 SLDNV-NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSC 832

Query: 405 DDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQN-LTKVTVWSCHRLKYLFSY-S 462
             L+ +                 N    PV    +C ++ L K+TV    +LKYL    S
Sbjct: 833 LRLEEL----------------FNFSSVPVD---FCAESLLPKLTVI---KLKYLPQLRS 870

Query: 463 MVNS---LGQLQHLEIRNCRSIEGV 484
           + N    L  L+HLE+ +C S++ +
Sbjct: 871 LCNDRVVLESLEHLEVESCESLKNL 895

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 201/429 (46%), Gaps = 35/429 (8%)

Query: 1   MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIA-----ISLPHRDIQELPER 55
           MHDV+   A+ I +  +  +  +   +     + I++D +A     +SL +  ++ LP+ 
Sbjct: 462 MHDVVRDFAIWIMSSSQ--DDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDL 519

Query: 56  LQCPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTL 113
           ++   ++  +L  +GN  + +V   F +    L++L   G    S PS SL RL +L +L
Sbjct: 520 VEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSL 579

Query: 114 CLDWC-ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172
            L  C +L  + ++  L KLE+L L  ++I + P  + +L R + LDLS    LE I   
Sbjct: 580 FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPAR 639

Query: 173 VISKLSQLEELYMGNGFSGWEKVEGGS---NASLVELERLTELTTLEIEVPDAEIL--PP 227
           V+S+LS LE L M +    W  V+G +    A++ E+  L  L  L I +  +  L    
Sbjct: 640 VVSRLSSLETLDMTSSHYRWS-VQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKR 698

Query: 228 DFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE 287
           +     L+++++ +G         L  + +  RL     I  +++ Q + G   LL  T 
Sbjct: 699 NTWIKRLKKFQLVVGSRY-----ILRTRHDKRRLT----ISHLNVSQVSIG--WLLAYTT 747

Query: 288 DLWLETLEGVQSVVHEL-DDGEGFPRLKRLLVTDC-----SEILHIVGSVRRVRCEVFPL 341
            L L   +G+++++ +L  D +GF  LK L + +      S +  +  +  +   ++  L
Sbjct: 748 SLALNHCQGIEAMMKKLVSDNKGFKNLKSLTIENVIINTNSWVEMVSTNTSKQSSDILDL 807

Query: 342 LEALSLMFL--TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKV 399
           L  L  + L   +LET    Q         L+II +  CRKL+ L        +  L+++
Sbjct: 808 LPNLEELHLRRVDLETFSELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEI 867

Query: 400 KVEDCDDLK 408
           ++  CD L+
Sbjct: 868 EISYCDSLQ 876

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 193/476 (40%), Gaps = 97/476 (20%)

Query: 1   MHDVIHVVAVSIATEERMFNV-----PNVADLEKKMEETIQKDPIAISLPHRDIQELPER 55
           MH+V+   A+ +A+E+  +       P++   E    E   +  + ISL    IQ LPE+
Sbjct: 471 MHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAEN-WRQALVISLLDNRIQTLPEK 529

Query: 56  LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115
           L CP L   +L  + +   ++   FF  M  L+VL       + +P S+  L+ L  L  
Sbjct: 530 LICPKLTTLML-QQNSSLKKIPTGFFMHMPVLRVLDLSFTSITEIPLSIKYLVELYHL-- 586

Query: 116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175
                               S++ + I+ LP E+G L +L+ LDL    +L+ I  + I 
Sbjct: 587 --------------------SMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAIC 626

Query: 176 KLSQLEELYMGNGFSGWEKVEGGSNAS----LVELERLTELTTLEIEVPDAEILPPDFVS 231
            LS+LE L +   ++GWE    G + +      +LE L  LTTL I V   E L   F  
Sbjct: 627 WLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEF 686

Query: 232 VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRT-EDLW 290
             L ++   I     +E + LL  +  S     + ++++SI   +D   ++     E+ W
Sbjct: 687 GALHKH---IQHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDW 743

Query: 291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL 350
           L +LE                                                 L+L  L
Sbjct: 744 LPSLE------------------------------------------------VLTLHSL 755

Query: 351 TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI 410
            NL  +  + + +D    N+R IN+  C KLK   + S  + L +L+ +++ DC +++ +
Sbjct: 756 HNLTRVWGNSVSQD-CLRNIRCINISHCNKLK---NVSWVQKLPKLEVIELFDCREIEEL 811

Query: 411 I----GPDMEKPPTTQGFIEINAEDDPVHQGI----YCCQNLTKVTVWSCHRLKYL 458
           I     P +E P        +   D P    I    +  Q +  + + +C R+K L
Sbjct: 812 ISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRFSFQKVETLVITNCPRVKKL 867

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 33  ETIQKDPIAISLPHRDIQELPERLQ--CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL 90
           ET QK  +   L  + + E PE LQ    NL+   L    N  ++    F    + LK  
Sbjct: 11  ETSQKTGV-FQLTGKGLTEFPEDLQKLTANLRTVDL---SNNKIEELPAFIGSFQHLKSF 66

Query: 91  QFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEI 149
                  +SLP+ +G+L  L+TL L+  +L  + ++IGQLK L  LSL+ +   + P  +
Sbjct: 67  TISCNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQFKEFPSGL 126

Query: 150 GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE 181
           G L +L +LDLS       + P  +++L  +E
Sbjct: 127 GTLRQLDVLDLSKNQI--RVVPAEVAELQAIE 156

Danio rerio (taxid: 7955)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 92  FPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIG 150
           F  + SS  PS L + ++L+ L L + +L  + ++IG L  L  L L+ +N   LP  + 
Sbjct: 511 FAAVVSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLC 570

Query: 151 QLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
           +L  LQ LD+ NC+ L  + P   SKLS L  L
Sbjct: 571 KLQNLQTLDVHNCYSLNCL-PKQTSKLSSLRHL 602

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 73/170 (42%), Gaps = 34/170 (20%)

Query: 51  ELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIG------------- 96
            +P     PNL+L  L+T   G     D  F   +     L+  GIG             
Sbjct: 298 SIPTFGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIA 357

Query: 97  ----------------SSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA 138
                           S S+P  +G LINLQ L LD   L+     ++G+L  L  LSL 
Sbjct: 358 NLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLF 417

Query: 139 YSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            + ++  +P  IG +T L+ LDLSN  + E I P  +   S L EL++G+
Sbjct: 418 SNRLSGGIPAFIGNMTMLETLDLSNNGF-EGIVPTSLGNCSHLLELWIGD 466

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 20/162 (12%)

Query: 42  ISLPHRDIQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS--- 97
           +SLP  D+  LP  +   NL  L  L    NG  +    F E ++  KVL          
Sbjct: 74  LSLPDNDLTTLPASIA--NLINLRELDVSKNGIQE----FPENIKNCKVLTIVEASVNPI 127

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
           S LP    +L+NL  L L+   L  + A  G+L KL+IL L  + +  LP  + +LT+L+
Sbjct: 128 SKLPDGFSQLLNLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLE 187

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GN------GFSG 191
            LDL +  + EV  P V+ +LS L E +M GN      GF G
Sbjct: 188 RLDLGSNEFTEV--PEVLEQLSGLREFWMDGNRLTFIPGFIG 227

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated ERBB2 'Tyr-1248' receptor, it may contribute to stabilize this unphosphorylated state.

Mus musculus (taxid: 10090)

>sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 13/149 (8%)

Query: 42  ISLPHRDIQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS--- 97
           +SLP  D+  LP  +   NL  L  L    NG  +    F E ++  KVL          
Sbjct: 74  LSLPDNDLTTLPASIA--NLINLRELDVSKNGIQE----FPENIKNCKVLTIVEASVNPI 127

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
           S LP    +L+NL  L L+   L  + A  G+L KL+IL L  + +  LP  + +LT+L+
Sbjct: 128 SKLPDGFSQLLNLTQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLE 187

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM 185
            LDL +  + EV  P V+ +LS L+E +M
Sbjct: 188 RLDLGSNEFTEV--PEVLEQLSGLKEFWM 214

Acts as an adapter for the receptor ERBB2, in epithelia. By binding the unphosphorylated 'Tyr-1248' of receptor ERBB2, it may contribute to stabilize this unphosphorylated state.

Homo sapiens (taxid: 9606)

>sp|O35930|GP1BA_MOUSE Platelet glycoprotein Ib alpha chain OS=Mus musculus GN=Gp1ba PE=2 SV=2

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
           +SL    +L  L LD CEL  +   G+L KLE L L+++N+  LP     L  L  LD+S
Sbjct: 65  ASLVHFTHLTYLYLDRCELTSLQTNGKLIKLENLDLSHNNLKSLPSLGWALPALTTLDVS 124

Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNG 188
               L  ++P V+  LSQL+ELY+ N 
Sbjct: 125 FN-KLGSLSPGVLDGLSQLQELYLQNN 150

GP-Ib, a surface membrane protein of platelets, participates in the formation of platelet plugs by binding to the A1 domain of vWF, which is already bound to the subendothelium.

Mus musculus (taxid: 10090)

>sp|A4IIK1|MFHA1_XENTR Malignant fibrous histiocytoma-amplified sequence 1 homolog OS=Xenopus tropicalis GN=mfhas1 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 103/220 (46%), Gaps = 20/220 (9%)

Query: 31  MEETIQKDPI--AISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGL 87
           + +T+Q  P    + L H ++   P++L   P L+   L   GN  +         M+ L
Sbjct: 162 LPDTMQGLPSLRTLDLDHNELCSFPQQLFHVPALEE--LDFSGNKMLGSLPEGIRSMQSL 219

Query: 88  KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA-AIGQLKKLEILSLAYSNINQLP 146
           K+L         LP S+  L+NL++L LD   L  +    G L+KL++L+++ +     P
Sbjct: 220 KILWLSSTSLCLLPDSICELVNLESLMLDNNNLHTLPEGFGALQKLKMLNVSSNAFQDFP 279

Query: 147 VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL 206
           V + QL  L+ L +S      V+ P VIS +++L  L++ N    +         S+VEL
Sbjct: 280 VPLLQLVDLEELYMSRNRL--VVLPEVISCMTKLVTLWLDNNRIRYLP------DSIVEL 331

Query: 207 ERLTELTTLEIEVPDAEILPPDFVSVELQRYKI-RIGDGP 245
             L EL    ++     ILP DF   +L +  I +I D P
Sbjct: 332 SFLEELV---LQGNQIAILPDDF--GKLSKVNIWKIKDNP 366

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.744	0.305	0.456	4e-82
255574526	1232	Disease resistance protein RFL1, putativ	0.933	0.409	0.411	1e-81
255563252	1603	Disease resistance protein RPS5, putativ	0.744	0.250	0.472	3e-81
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.727	0.159	0.463	3e-77
224125154	949	cc-nbs-lrr resistance protein [Populus t	0.737	0.419	0.460	1e-76
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.744	0.3	0.453	6e-74
358344919	1995	NBS/LRR resistance protein-like protein	0.866	0.234	0.379	3e-72
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.733	0.167	0.437	1e-71
359488108	1436	PREDICTED: disease resistance protein At	0.924	0.347	0.356	7e-71
359488103	1530	PREDICTED: disease resistance protein At	0.914	0.322	0.368	9e-71

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 271/423 (64%), Gaps = 21/423 (4%)

Query: 1   MHDVIHVVAVSIATEERMFNVPNVADLEKKM-EETIQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+H  A+S+A   R  +V  VAD  K+     + +   AISLP R I +LP  L+CP
Sbjct: 460 MHDVVHSFAISVAL--RDHHVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECP 517

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           NL  FLL  + +  +Q+ D FF  M+ LK+L    +  S LPSSL  L NLQTLCLD C 
Sbjct: 518 NLNSFLLLNK-DPSLQIPDSFFREMKELKILDLTEVNLSPLPSSLQFLENLQTLCLDHCV 576

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DI+ IG+L KL++LSL  SNI +LP EIG++TRLQLLDLSNC  LEVI+PN +S L++
Sbjct: 577 LEDISIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLTR 636

Query: 180 LEELYMGNGFSGWEKVEGGS----NASLVELERLTELTTLEIEVPDAEILPPDFVSV--E 233
           LE+LYMGN F  WE  EG S    NA L EL+ L+ L+TL +++ DA+ +P D  S    
Sbjct: 637 LEDLYMGNSFVKWE-TEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQN 695

Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
           L+R++I IGDG +       VK   SR + L   K  +++Q  +G   LL+ TE+L L+ 
Sbjct: 696 LERFRIFIGDGWD-----WSVKDATSRTLKL---KLNTVIQLEEGVNTLLKITEELHLQE 747

Query: 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353
           L GV+S++++L DGEGFP+L+ L V +C  + +I+ S+R      F  L++L L  L NL
Sbjct: 748 LNGVKSILNDL-DGEGFPQLRHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNL 806

Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
           E IC+ QL   +S  NLRI+ V+SC +LK LFS SMA+ L+RL+++ + DC  ++ ++  
Sbjct: 807 EKICHGQLMA-ESLGNLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAE 865

Query: 414 DME 416
           + E
Sbjct: 866 ESE 868

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 239/581 (41%), Positives = 325/581 (55%), Gaps = 77/581 (13%)

Query: 1    MHDVIHVVAVSIA-TEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
            +HD+I   AVSIA  E+++F + N   LE   +E   K    ISLP  ++ +LPE L+ P
Sbjct: 454  IHDLIQDFAVSIAYREQQVFTINNYIRLEVWPDEDALKSCTRISLPCLNVVKLPEVLESP 513

Query: 60   NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
            NL+  LL TE    +++   FF+G+  LKVL F G+  SSLP SLG L +L+TLCLD C 
Sbjct: 514  NLEFLLLSTE-EPSLRIPGSFFQGIPILKVLDFCGMSFSSLPPSLGCLEHLRTLCLDHCL 572

Query: 120  LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
            L DIA IG+LKKLEIL+ A+S+I +LP EIG+L+RL+LLDLS+C  L V   NV+S+L  
Sbjct: 573  LHDIAIIGELKKLEILTFAHSDIVELPREIGELSRLKLLDLSHCSKLNVFPANVLSRLCL 632

Query: 180  LEELYMGNGFSGWEKVEG---GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQR 236
            LEELYM N F  W K+EG    SNASL EL  L+ LT+LEI++ DA ILP D  + +LQR
Sbjct: 633  LEELYMANSFVRW-KIEGLMNQSNASLDELVLLSHLTSLEIQILDARILPRDLFTKKLQR 691

Query: 237  YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296
            YKI IGD    E+D      E SR++ LK     SI  E +     L+ T+DL L    G
Sbjct: 692  YKILIGD----EWD-WNGHDETSRVLKLK--LNTSIHSEYE-VNQFLEGTDDLSLADARG 743

Query: 297  VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETI 356
            V S+++ L+  EGFP+LKRL+V +C EI  +V +   V    FPLL++L L  L NLE  
Sbjct: 744  VNSILYNLN-SEGFPQLKRLIVQNCPEIHCLVNASESVPTVAFPLLKSLLLENLMNLEKF 802

Query: 357  CYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII---GP 413
            C+ +L    SFS LR I V SC +LK L SFSM + L++LQ+++V DC ++  I    G 
Sbjct: 803  CHGELV-GGSFSELRSIKVRSCNELKNLLSFSMVRFLMQLQEMEVIDCRNVMEIFKYEGA 861

Query: 414  D-----------------MEKPPTTQGFI-------------EINAEDD-----PVHQ-- 436
            D                 +E+ P    F              EI +E D     P+ Q  
Sbjct: 862  DSDIEDKAAALTRLRSLTLERLPKLNSFCSIKEPLTIDPGLEEIVSESDYGPSVPLFQVP 921

Query: 437  --------GIYC-----------CQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 477
                     I C           C +L  + V +C   KYLF+ SM+ S  +L+ LEI N
Sbjct: 922  TLEDLILSSIPCETIWHGELSTACSHLKSLIVENCRDWKYLFTLSMIRSFIRLEKLEICN 981

Query: 478  CRSIEGVVNTTTLGGRDEFK--VFPKLHYLSLHWLPKLSSF 516
            C  +EG++ T      +     +FP+L++L L  L  +SS 
Sbjct: 982  CEFMEGIIRTEEFSEEEGMIKLMFPRLNFLKLKNLSDVSSL 1022

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 196/415 (47%), Positives = 267/415 (64%), Gaps = 13/415 (3%)

Query: 1   MHDVIHVVAVSIATE-ERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
           +HDV+  VA+SIA+  + +F V N A L++   + + K    ISLP+ DI  LPE L+CP
Sbjct: 466 IHDVVRDVAISIASRMQHLFTVRNGALLKEWPNKDVCKSCTRISLPYNDIHGLPEVLECP 525

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
            L+LFLL+T+ +  ++V D  FE  + L+VL F G+  SSLP SLG L NL TLCLDWC 
Sbjct: 526 ELELFLLFTQ-DISLKVPDLCFELTKNLRVLNFTGMHFSSLPPSLGFLKNLFTLCLDWCA 584

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L D+A IG+L  L ILS  +S+I +LP EI QLT+L+ LDLS+C  L+VI   +IS+L+Q
Sbjct: 585 LRDVAIIGELTGLTILSFKHSDIVELPREIRQLTKLKFLDLSHCLKLKVIPAKIISELTQ 644

Query: 180 LEELYMGNGFSGW--EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRY 237
           LEELYM N F  W  + +    NASL ELE L  LTTLEI V DA+ILP D    +L+R+
Sbjct: 645 LEELYMNNSFDLWDVQGINNQRNASLAELECLPYLTTLEICVLDAKILPKDLFFRKLERF 704

Query: 238 KIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV 297
           +I IGD      D        SR + LK +   SI  E+ G  +LL+ TEDL+L  ++G+
Sbjct: 705 RIFIGDVWSGTGD-----YGTSRTLKLK-LNTSSIHLEH-GLSILLEVTEDLYLAEVKGI 757

Query: 298 QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETIC 357
           +SV+++L D +GF +LK L V +  EI +I+   RR  C  FP+LE+L L  L +LE IC
Sbjct: 758 KSVLYDL-DSQGFTQLKHLDVQNDPEIQYIIDPNRRSPCNAFPILESLYLDNLMSLEKIC 816

Query: 358 YSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412
             +L    SFS LR + V  C +LK LFSFSM + LL+LQ++KV DC +L+ I+ 
Sbjct: 817 CGKLTTG-SFSKLRSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCANLEEIVA 870

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  295 bits (756), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 190/410 (46%), Positives = 257/410 (62%), Gaps = 17/410 (4%)

Query: 1   MHDVIHVVAVSIATEER-MFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+H  A  +A+ +  +F V   + LE+  E+ I +   AISLP   I +LPE  +CP
Sbjct: 415 MHDVVHNFATLVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECP 474

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           +LQ FLLY + +  +++ D+FF  M+ LK++    +  S +P SL  L NLQTLCLD C 
Sbjct: 475 DLQSFLLYNK-DSSLKIPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCT 533

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DIAAIG+LKKL++LS   S + QLP E+G+LTRLQLLDLS C  LEVI   V+S L++
Sbjct: 534 LEDIAAIGELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTK 593

Query: 180 LEELYMGNGFSGWEKVEGG---SNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQR 236
           LEELYMGN F  WE  E     +NASL EL+ L  L TLE+ + +AEILP D  S +L  
Sbjct: 594 LEELYMGNSFVQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDL 653

Query: 237 YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296
           YK+ IG     E      K EASR + LK    + I    +  K+LL  TEDL+L+ LEG
Sbjct: 654 YKVFIG-----EEWSWFGKYEASRTLKLKLNSSIEI----EKVKVLLMTTEDLYLDELEG 704

Query: 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEV-FPLLEALSLMFLTNLET 355
           V++V++EL DG+GFP+LK L + + SEI +IV  +      + FP LE+L +  L NL  
Sbjct: 705 VRNVLYEL-DGQGFPQLKHLHIQNSSEIQYIVDCLSMGNHYIAFPRLESLLVDNLNNLGQ 763

Query: 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD 405
           ICY QL    SFS LR + V+ C  LK LF FSM + L++L+++ V  C+
Sbjct: 764 ICYGQLMSG-SFSKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCN 812

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 192/417 (46%), Positives = 260/417 (62%), Gaps = 19/417 (4%)

Query: 1   MHDVIHVVAVSIATEER-MFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+H  A  +A+ +  +F +   +D   K    + +   AISLP   I  LPE L  P
Sbjct: 464 MHDVVHGFAAFVASRDHHVFTL--ASDTVLKEWPDMPEQCSAISLPRCKIPGLPEVLNFP 521

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
             + F+LY E +  +++ D  F+G + L+++    +   +LPSSL  L  LQTLCLD C 
Sbjct: 522 KAESFILYNE-DPSLKIPDSLFKGTKTLQLVDMTAVQLPTLPSSLQFLEKLQTLCLDSCG 580

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DIA IG+LK L++LSL  SNI +LP EIGQLTRLQLLDLSN   LE+I PNV+S L+Q
Sbjct: 581 LKDIAMIGELKMLKVLSLIDSNIVRLPREIGQLTRLQLLDLSNNPRLEMIPPNVLSCLTQ 640

Query: 180 LEELYMGNGFSGWEKVEG----GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQ 235
           LE+LYM N F  W ++EG     +NASL EL+ L  L+TL + + D  ILP DF S +L+
Sbjct: 641 LEDLYMENSFLQW-RIEGLDSQRNNASLAELKYLPNLSTLHLHITDPMILPRDFFSKKLE 699

Query: 236 RYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295
           R+KI IG+G +        K E S  M LK    +   Q  +G ++LL+RTEDL L+ L+
Sbjct: 700 RFKILIGEGWD-----WSRKRETSTTMKLKISASI---QSEEGIQLLLKRTEDLHLDGLK 751

Query: 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET 355
           GV+SV +EL DG+GFPRLK L + +  EI +IV S        FPLLE+LSL  L  LE 
Sbjct: 752 GVKSVSYEL-DGQGFPRLKHLHIQNSLEIRYIVDSTMLSPSIAFPLLESLSLDNLNKLEK 810

Query: 356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412
           IC SQ    +SFSNLRI+ V+SC  LK LFS  M + LL+L+ + + DC  +++I+ 
Sbjct: 811 ICNSQPVA-ESFSNLRILKVESCPMLKNLFSLHMERGLLQLEHISIIDCKIMEVIVA 866

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 192/423 (45%), Positives = 272/423 (64%), Gaps = 21/423 (4%)

Query: 1   MHDVIHVVAVSIATEERMFNVPNVADLEKKMEET-IQKDPIAISLPHRDIQELPERLQCP 59
           MHDV+   A S+A+  R  +V  VAD  K+   + + +   AISLP+R I +LP  L+CP
Sbjct: 460 MHDVVQSFAFSVAS--RDHHVLIVADEFKEWPTSDVLQQYTAISLPYRKIPDLPAILECP 517

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           NL  F+L  + +  +Q+ D+FF  M+ LKVL    +  S LPSSL  L NLQTLCLD C 
Sbjct: 518 NLNSFILLNK-DPSLQIPDNFFREMKELKVLDLTRVNLSPLPSSLQFLENLQTLCLDGCV 576

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L DI+ +G+LKKL++LSL  S+I  LP EIG+LTRL LLDLSNC  LEVI+PNV+S L++
Sbjct: 577 LEDISIVGELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLTR 636

Query: 180 LEELYMGNGFSGWEKVEGGS----NASLVELERLTELTTLEIEVPDAEILPPD--FVSVE 233
           LEELYMGN F  WE  EG S    NA L EL+RL+ L TL +++ DA+ +  D  F+  +
Sbjct: 637 LEELYMGNSFVKWE-TEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQK 695

Query: 234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
           L+R++I IGDG +       VK   SR + L   K  +++Q  +    LL+ TE+L L+ 
Sbjct: 696 LERFRIFIGDGWD-----WSVKYATSRTLKL---KLNTVIQLEEWVNTLLKSTEELHLQE 747

Query: 294 LEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL 353
           L+GV+S++++L DGE FPRLK L V +C  + +I+ S+R      F  L++L L  L NL
Sbjct: 748 LKGVKSILNDL-DGEDFPRLKHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENLDNL 806

Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
           E IC+ QL   +S   LRI+ V+SC +LK LFS SMA+ L+RL+++ + DC  ++ ++  
Sbjct: 807 EKICHGQLMA-ESLGKLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAE 865

Query: 414 DME 416
           + E
Sbjct: 866 ESE 868

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344919|ref|XP_003636533.1| NBS/LRR resistance protein-like protein [Medicago truncatula] gi|355502468|gb|AES83671.1| NBS/LRR resistance protein-like protein [Medicago truncatula]

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 190/501 (37%), Positives = 291/501 (58%), Gaps = 33/501 (6%)

Query: 1   MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQK-DPIAISLPHRDIQELPERLQCP 59
           MHD +   A+SIA  +++  +   +D E    + +++   I +   H D  ELP+ + CP
Sbjct: 464 MHDFVRDFAISIACRDKLVLLRKQSDAEWPTNDFLKRCRQIVLDRWHMD--ELPQTIYCP 521

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119
           N++ F+ ++  N  +++ D FFEGM  L+V+   G+   SLP+S   L +LQTLCL  C 
Sbjct: 522 NIKFFV-FSNVNRSLEIPDTFFEGMRCLRVVDLTGLNLLSLPTSFRLLTDLQTLCLYRCV 580

Query: 120 LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ 179
           L ++ A+  L+ LEIL L  S++ +LP EIG+L RL++LDLS+   +EV+ PN+IS L++
Sbjct: 581 LENMDALEALQNLEILCLWKSSMIKLPREIGRLIRLRMLDLSHS-GIEVVPPNIISSLTK 639

Query: 180 LEELYMGNGFSGWEKVEG---GSNASLVELERLTELTTLEIEVPDAEILPPD--FVSVEL 234
           LEELYMGN    WE V       NASL EL +L +LT LE+++ +  +LP D   V  +L
Sbjct: 640 LEELYMGNTSINWEDVSSTVHNENASLAELRKLPKLTALELQIRETWMLPRDLQLVFEKL 699

Query: 235 QRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETL 294
           ++YKI IGD     +D   +K    + +MLK    + +     G K L++  E+L+L+ +
Sbjct: 700 EKYKITIGDV----WDWSDIKDGTLKTLMLKLGTNIHL---EHGIKALIKSVENLYLDDV 752

Query: 295 EGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEV-FPLLEALSLMFLTNL 353
           +G+Q+V+  L + EGF  LK L V + S + HI+ +  R +    FP+LE L L+ L NL
Sbjct: 753 DGIQNVLPHL-NREGFTLLKHLYVQNNSNLNHILDNKERNQIHASFPILETLVLLNLRNL 811

Query: 354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII-- 411
           E IC+ Q     SF +L +I V +C +LKYLFSF+M K L  L K++V +C+ +K I+  
Sbjct: 812 EHICHGQ-PSVASFGSLSVIKVKNCVQLKYLFSFTMVKGLSHLCKIEVCECNSMKEIVFG 870

Query: 412 -------GPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMV 464
                   P+++    +         DD  HQ + C  NLT + V +C  LKYLF  S+V
Sbjct: 871 DNNSSVAFPNLDTLKLSSLLNLNKVWDDN-HQSM-C--NLTSLIVDNCVGLKYLFPSSLV 926

Query: 465 NSLGQLQHLEIRNCRSIEGVV 485
            S   L+HLEI NC  +E ++
Sbjct: 927 ESFMNLKHLEISNCHMMEEII 947

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 179/409 (43%), Positives = 254/409 (62%), Gaps = 13/409 (3%)

Query: 4   VIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQL 63
            +H  AVSIA         +     K+++   Q+    I L H +I ELP  L+CP L L
Sbjct: 461 AVHDAAVSIADRYHHVLTTDNEIQVKQLDNDAQRQLRQIWL-HGNISELPADLECPQLDL 519

Query: 64  FLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI 123
           F ++ + N  ++++D+FF  M  L+VL    +  SSLPSS+  L NLQTLCLD   L DI
Sbjct: 520 FQIFND-NHYLKIADNFFSRMHKLRVLGLSNLSLSSLPSSVSLLENLQTLCLDRSTLDDI 578

Query: 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
           +AIG LK+LEILS   SNI QLP EI QLT+L+LLDLS+C+ LEVI P+V SKLS LEEL
Sbjct: 579 SAIGDLKRLEILSFFQSNIKQLPREIAQLTKLRLLDLSDCFELEVIPPDVFSKLSMLEEL 638

Query: 184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGD 243
           YM N F  W+  EG +NASL ELE L+ LT  EI + D+++LP   +   L++Y++ IGD
Sbjct: 639 YMRNSFHQWD-AEGKNNASLAELENLSHLTNAEIHIQDSQVLPYGIIFERLKKYRVCIGD 697

Query: 244 GPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHE 303
             + +    ++++   +L          I   N G +MLL RTEDL+L  +EGV +++ E
Sbjct: 698 DWDWDGAYEMLRTAKLKL-------NTKIDHRNYGIRMLLNRTEDLYLFEIEGV-NIIQE 749

Query: 304 LDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE 363
           L D EGFP LK L + +  EI +I+ ++  V    FP+LE+L L  L++L+ IC+  LR 
Sbjct: 750 L-DREGFPHLKHLQLRNSFEIQYIISTMEMVSSNAFPILESLILYDLSSLKKICHGALRV 808

Query: 364 DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412
            +SF+ LRII V+ C KL  LFSF +A+ L +LQK+K+  C  ++ ++ 
Sbjct: 809 -ESFAKLRIIAVEHCNKLTNLFSFFVARGLSQLQKIKIAFCMKMEEVVA 856

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 219/614 (35%), Positives = 301/614 (49%), Gaps = 115/614 (18%)

Query: 1    MHDVIHVVAVSIATEER-MFNVPNVADLEKKMEETIQKDPIA----ISLPHRDIQELPER 55
            MHD++   A  IA+++  +F + N      ++E   + D +     +SL   DI+ELPE 
Sbjct: 469  MHDLVRSTARKIASDQHHVFTLQNTT---VRVEGWPRIDELQKVTWVSLHDCDIRELPEG 525

Query: 56   LQCPNLQLFLLY-TEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114
            L CP L+LF  Y    N  +Q+ ++FFE M+ LKVL    +   SLP S     NL+TLC
Sbjct: 526  LACPKLELFGCYDVNTNSAVQIPNNFFEEMKQLKVLDLSRMQLPSLPLSCHCRTNLRTLC 585

Query: 115  LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174
            LD C L +I  I +LKKLEILSL YS+I +LP EI QLT L+L DL   + L+VI P+VI
Sbjct: 586  LDGCNLGEIVIIAELKKLEILSLTYSDIEKLPREIAQLTHLRLFDLKGSYKLKVIPPDVI 645

Query: 175  SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVEL 234
            S LSQLE+L M N F+ WE  EG SNA L EL+ L+ LT+L+I++PDA++LP D V   L
Sbjct: 646  SSLSQLEDLCMENSFTQWEG-EGKSNACLAELKHLSHLTSLDIQIPDAKLLPKDIVFDTL 704

Query: 235  QRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETL 294
             RY+I +GD            SEA++ + L   K  + L   DG   LL+RTEDL L  L
Sbjct: 705  VRYRIFVGD-----VWSWGGISEANKTLQLN--KFDTSLHLVDGIIKLLKRTEDLHLREL 757

Query: 295  EGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNL 353
             G  +V+ +L DGEGF +LK L V    EI +IV S+        FP++E LSL  L NL
Sbjct: 758  CGGTNVLSKL-DGEGFLKLKHLNVESSPEIQYIVNSMDLTPSHGAFPVMETLSLNQLINL 816

Query: 354  ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII-- 411
            + +C  Q     SF  LR + V+ C  LK+LFS S+A+ L RL++ KV  C  +  ++  
Sbjct: 817  QEVCRGQFPAG-SFGCLRKVEVEDCDGLKFLFSLSVARGLSRLEETKVTRCKSMVEMVSQ 875

Query: 412  ------------------------------------GPDMEKPPTTQGFIEINAEDDPVH 435
                                                 P + KP +T     +     P++
Sbjct: 876  GRKEIKEDAVNVPLFPELRSLTLEDLPKLSNFCFEENPVLSKPASTI----VGPSTPPLN 931

Query: 436  QG--------IYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNT 487
            Q              NL  + +  C  L  LF  S+   L  LQ L + NC  +E V + 
Sbjct: 932  QPEIRDGQLLFSLGGNLRSLNLKKCMSLLKLFPPSL---LQNLQELTVENCDKLEQVFDL 988

Query: 488  TTLG-------------------------------GRDEFK-----------VFPKLHYL 505
              L                                 R+ F            +FPKL Y+
Sbjct: 989  EELNVDDGHVGLLPKLGKLRLIDLPKLRHICNCGSSRNHFPSSMASAPVGNIIFPKLFYI 1048

Query: 506  SLHWLPKLSSFASP 519
            SL +LP L+SF SP
Sbjct: 1049 SLGFLPNLTSFVSP 1062

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488103|ref|XP_002263579.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 293/564 (51%), Gaps = 70/564 (12%)

Query: 1    MHDVIHVVAVSIATEERMFNVPNVADLEKKMEETIQKDPIAIS---LPHRDIQELPERLQ 57
            MHD++   A  IA+E+   +V        ++EE  + D + ++   L H DI ELPE L 
Sbjct: 464  MHDLVRSTARKIASEQH--HVFTHQKTTVRVEEWSRIDELQVTWVKLHHCDIHELPEGLV 521

Query: 58   CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117
            CP L+ F  + + N  +++ + FFEGM+ LKVL   G+   SLP SL  L NL+TLCLD 
Sbjct: 522  CPKLEFFECFLKTNLAVKIPNTFFEGMKQLKVLDLTGMQLPSLPLSLQSLANLRTLCLDG 581

Query: 118  CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL 177
            C+L DI  I +LKKLEILSL  S+I QLP EI QLT L+L DL + + L+VI  +VIS L
Sbjct: 582  CKLGDIVIIAELKKLEILSLMDSDIEQLPREIAQLTHLRLFDLKSSFKLKVIPSDVISSL 641

Query: 178  SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRY 237
             +LE+L M N F+ WE  EG SNA L EL+ L+ LT L+I++PDA++LP D V   L RY
Sbjct: 642  FRLEDLCMENSFTQWEG-EGKSNACLAELKHLSHLTALDIQIPDAKLLPKDMVFDNLMRY 700

Query: 238  KIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV 297
            +I +G       D  + +       +LK  K  + L   DG   LL+RTEDL L  L G 
Sbjct: 701  RIFVG-------DIWIWEKNYKTNRILKLNKFDTSLHLVDGISKLLKRTEDLHLRELCGG 753

Query: 298  QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNLETI 356
             +V+ +L+  EGF +LK L V    EI +IV S+        FP++E LSL  L NL+ +
Sbjct: 754  TNVLSKLNR-EGFLKLKHLNVESSPEIQYIVNSMDLTSSHAAFPVMETLSLNQLINLQEV 812

Query: 357  CYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII----- 411
            C+ Q     SF  LR + V+ C  LK+LFS S+A+ L RL++ KV  C  +  ++     
Sbjct: 813  CHGQFPAG-SFGCLRKVEVEDCDGLKFLFSLSVARGLSRLEETKVTRCKSMVEMVSQGRK 871

Query: 412  ---------------------------------GPDMEKPPTTQGFIEINAEDDPVHQG- 437
                                              P + KP +T     +     P++Q  
Sbjct: 872  EIKEDAVNVPLFPELRSLTLKDLPKLSNFCFEENPVLSKPASTI----VGPSTPPLNQPE 927

Query: 438  -------IYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTL 490
                   +    NL  + + +C  L  LF  S+   L  LQ L +++C  +E V +   L
Sbjct: 928  IRDGQLLLSLGGNLRSLKLKNCMSLLKLFPPSL---LQNLQELTLKDCDKLEQVFDLEEL 984

Query: 491  GGRD-EFKVFPKLHYLSLHWLPKL 513
               D   ++ PKL  L L  LPKL
Sbjct: 985  NVDDGHVELLPKLKELRLIGLPKL 1008

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	540
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.725	0.426	0.241	2e-15
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.359	0.196	0.263	2.3e-12
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.312	0.185	0.239	6.6e-11
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.305	0.186	0.281	1.1e-05
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.333	0.186	0.258	2.3e-05
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.327	0.196	0.25	0.00013
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.138	0.070	0.341	0.00014
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.316	0.224	0.238	0.00039
MGI|MGI:1333744	734	Gp1ba "glycoprotein 1b, alpha	0.140	0.103	0.432	0.0004

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 100/414 (24%), Positives = 174/414 (42%)

Query:     1 MHDVIHVVAV-SIATEERMFNVPNVAD--LEKKMEETIQKDPIAISLPHRDIQELPERLQ 57
             MHDV+   A+  ++++   F+   +A   L +  ++        +SL    ++ LP  + 
Sbjct:   431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNV- 489

Query:    58 CPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFXXXXXXXXXXXXXXXXNLQTLCLD 116
                ++  +L  +GN  + +V + F +    L++L                  +L++L L 
Sbjct:   490 IEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLR 549

Query:   117 WCE-LADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS 175
              C+ L ++ ++  L KL+ L L  S I +LP  +  L+ L+ + +SN + L+ I    I 
Sbjct:   550 NCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTIL 609

Query:   176 KLSQLEELYM-GNGFS-GWEKVEGGSNASXXXXXXXXXXXXXXXXVPDAEILPPDFVSVE 233
             +LS LE L M G+ +S G +  E    A+                + D      +F S+ 
Sbjct:   610 QLSSLEVLDMAGSAYSWGIKGEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLT 669

Query:   234 LQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET 293
              +  K +        F P+   S          I  V++   + G   LLQ    L L  
Sbjct:   670 KRLTKFQF------LFSPIRSVSPPGTGEGCLAISDVNVSNASIG--WLLQHVTSLDLNY 721

Query:   294 LEGVQSVVHEL--DDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT 351
              EG+  +   L       F  +K L +     +    G   ++  ++FP LE LSL  + 
Sbjct:   722 CEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCESQL--DLFPNLEELSLDNV- 778

Query:   352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS-MAKNLLRLQKVKVEDC 404
             NLE+I             L+++ V  CR+LK LFS   +A  L  LQ++KV  C
Sbjct:   779 NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSC 832

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
 Identities = 54/205 (26%), Positives = 95/205 (46%)

Query:     1 MHDVIHVVAV---SIATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQ 57
             MHDV+   A+   S + ++    V +   L+   ++ +      +SL +  ++ LP+ ++
Sbjct:   462 MHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVE 521

Query:    58 --CPNLQLFLLYTEGNGPM-QVSDHFFEGMEGLKVLQFXXXXXXXXXX-XXXXXXNLQTL 113
               C    + LL  +GN  + +V   F +    L++L                   +L +L
Sbjct:   522 EFCVKTSVLLL--QGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRLFSLHSL 579

Query:   114 CLDWC-ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPN 172
              L  C +L  + ++  L KLE+L L  ++I + P  + +L R + LDLS    LE I   
Sbjct:   580 FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPAR 639

Query:   173 VISKLSQLEELYMGNGFSGWEKVEG 197
             V+S+LS LE L M +    W  V+G
Sbjct:   640 VVSRLSSLETLDMTSSHYRWS-VQG 663

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
 Identities = 44/184 (23%), Positives = 90/184 (48%)

Query:   342 LEALSLMFLTNLETICYSQLREDQSF-SNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVK 400
             LE L+ + +T L       L E  +   +++ ++V+ C +L Y    S+  +   L+++ 
Sbjct:   664 LENLTTLGITVLSLETLKTLFEFGALHKHIQHLHVEECNELLYFNLPSLTNHGRNLRRLS 723

Query:   401 VEDCDDLKMIIGP-DMEKP--PTTQGFIEINAED------DPVHQGIYCCQNLTKVTVWS 451
             ++ C DL+ ++ P D E    P+ +     +  +      + V Q   C +N+  + +  
Sbjct:   724 IKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQD--CLRNIRCINISH 781

Query:   452 CHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLP 511
             C++LK   + S V  L +L+ +E+ +CR IE +++       ++  +FP L  L    LP
Sbjct:   782 CNKLK---NVSWVQKLPKLEVIELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLP 838

Query:   512 KLSS 515
             +L+S
Sbjct:   839 ELNS 842

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 52/185 (28%), Positives = 82/185 (44%)

Query:   342 LEALSLMFLTNLET-ICYSQLREDQSFSNLRIINVD--SCRKLKYLFSFSMAKNLLR-LQ 397
             L  L  + L NL   +  S L E +   NL ++ ++  S   L+ L     +  L+R LQ
Sbjct:   634 LSNLKTVRLLNLRMWLTISLLEELERLENLEVLTIEIISSSALEQLLC---SHRLVRCLQ 690

Query:   398 KVKVEDCDD--LKMIIGPDMEKPPTTQGFIE-INAEDDPVHQGIY----CCQNLTKVTVW 450
             KV V+  D+  ++++  P +      + FI      D  + +       C  NL+KV + 
Sbjct:   691 KVSVKYLDEESVRILTLPSIGD--LREVFIGGCGMRDIIIERNTSLTSPCFPNLSKVLIT 748

Query:   451 SCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWL 510
              C+ LK L   + +     L HL + N R IE +++       D    F KL YL L  L
Sbjct:   749 GCNGLKDL---TWLLFAPNLTHLNVWNSRQIEEIISQEKASTAD-IVPFRKLEYLHLWDL 804

Query:   511 PKLSS 515
             P+L S
Sbjct:   805 PELKS 809

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 52/201 (25%), Positives = 90/201 (44%)

Query:   336 CEVFPLLEALSLMFLTNLETICY---SQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK- 391
             C +  +   LSL +L+  E+  +   S L+E Q   NL+ + +    +L  L    +AK 
Sbjct:   622 CSISGISRLLSLRWLSLRESNVHGDASVLKELQQLENLQDLRITESAELISLDQ-RLAKL 680

Query:   392 -NLLRLQKVKVEDCD-----DLKMIIGPDMEKPPTTQGFI---EINAEDDPVHQG--IYC 440
              ++LR++    +  D      ++ + G  +E    ++  I   E   E   +H    I C
Sbjct:   681 ISVLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPC 740

Query:   441 CQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTT-TLGGRDEFKVF 499
               NLT + +  CH +K L   + +     L +L+IR+ R +  ++N    +        F
Sbjct:   741 FTNLTGLIIMKCHSMKDL---TWILFAPNLVNLDIRDSREVGEIINKEKAINLTSIITPF 797

Query:   500 PKLHYLSLHWLPKLSS-FASP 519
              KL  L L+ LPKL S + SP
Sbjct:   798 QKLERLFLYGLPKLESIYWSP 818

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 50/200 (25%), Positives = 85/200 (42%)

Query:   324 ILHIVGSVRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQSFSNLRIINVDSCRKLK 382
             +L ++GS  +V  +   L E   L  L  L  T+    +  DQ  + L I N+     L+
Sbjct:   631 LLRLLGS--KVHGDASVLKELQQLQNLQELAITVSAELISLDQRLAKL-ISNLCIEGFLQ 687

Query:   383 YLFSFSMAKNLLRLQKVKVEDC--DDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYC 440
               F  S   ++  L  ++VE+    ++K        +  T   ++ IN +       I C
Sbjct:   688 KPFDLSFLASMENLSSLRVENSYFSEIKC------RESETESSYLRINPK-------IPC 734

Query:   441 CQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFP 500
               NL+++ +  CH +K L   + +     L  L I + R +  ++N            F 
Sbjct:   735 FTNLSRLEIMKCHSMKDL---TWILFAPNLVVLLIEDSREVGEIINKEKATNLTSITPFL 791

Query:   501 KLHYLSLHWLPKLSS-FASP 519
             KL +L L+ LPKL S + SP
Sbjct:   792 KLEWLILYNLPKLESIYWSP 811

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 27/79 (34%), Positives = 47/79 (59%)

Query:   109 NLQTLCLDWC-ELADIAAIGQLKKLEILSLAY-SNINQLPVEIGQLTRLQLLDLSNCWWL 166
             NL+++ + +   L +I  + +   LEILSL +  ++ +LP  I  L +L++L++ NC  L
Sbjct:   627 NLKSIDMSFSYSLKEIPNLSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSML 686

Query:   167 EVIAPNVISKLSQLEELYM 185
             +VI  N+   L+ LE L M
Sbjct:   687 KVIPTNI--NLASLERLDM 703

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
 Identities = 45/189 (23%), Positives = 78/189 (41%)

Query:   333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNL-RIINVDSCRKLKYLFSFSMAK 391
             +V  +   L E   L  L +L     ++L  +Q  +NL  I+ ++   +  +  SF  + 
Sbjct:   527 KVHGDASVLKELQKLQNLQHLAITLSAELSLNQRLANLISILGIEGFLQKPFDLSFLASM 586

Query:   392 NLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWS 451
               L    VK     ++K        +  T   ++ IN +       I C  NL+++ +  
Sbjct:   587 ENLSSLWVKNSYFSEIKC------RESETASSYLRINPK-------IPCFTNLSRLGLSK 633

Query:   452 CHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLP 511
             CH +K L   + +     L +L I + R +  ++N            F KL  L L+ LP
Sbjct:   634 CHSIKDL---TWILFAPNLVYLYIEDSREVGEIINKEKATNLTSITPFLKLERLILYNLP 690

Query:   512 KLSS-FASP 519
             KL S + SP
Sbjct:   691 KLESIYWSP 699

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:1333744 Gp1ba "glycoprotein 1b, alpha polypeptide" [Mus musculus (taxid:10090)]

 Score = 123 (48.4 bits), Expect = 0.00040, P = 0.00040
 Identities = 35/81 (43%), Positives = 49/81 (60%)

Query:   109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG-QLTRLQLLDLS-NCWWL 166
             +L  L LD CEL  +   G+L KLE L L+++N+  LP  +G  L  L  LD+S N   L
Sbjct:    72 HLTYLYLDRCELTSLQTNGKLIKLENLDLSHNNLKSLP-SLGWALPALTTLDVSFNK--L 128

Query:   167 EVIAPNVISKLSQLEELYMGN 187
               ++P V+  LSQL+ELY+ N
Sbjct:   129 GSLSPGVLDGLSQLQELYLQN 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      540       508   0.00086  119 3  11 22  0.38    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  301 KB (2155 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.35u 0.11s 40.46t   Elapsed:  00:00:02
  Total cpu time:  40.35u 0.11s 40.46t   Elapsed:  00:00:02
  Start:  Tue May 21 08:15:11 2013   End:  Tue May 21 08:15:13 2013

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0007155 "cell adhesion" evidence=ISO

GO:0007596 "blood coagulation" evidence=ISO;IMP

GO:0007599 "hemostasis" evidence=IMP

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0031362 "anchored to external side of plasma membrane" evidence=IDA

GO:0042730 "fibrinolysis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	540
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-04

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 85  EGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAA-IGQLKKLEILSLAYSNIN 143
             LK L        SLPS L  L NL+ L L + +L+D+   +  L  L  L L+ + I+
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS 199

Query: 144 QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            LP EI  L+ L+ LDLSN   +E+   + +S L  L  L + N
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSN 241

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 23/148 (15%)

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEG--------MEGLKVLQFPG-IGSSSLPSSLGRLIN 109
           P   +  L T     + +S++   G           LKVL   G +    +P+SL  L +
Sbjct: 135 PRGSIPNLET-----LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189

Query: 110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDL--SNCW 164
           L+ L L   +L       +GQ+K L+ + L Y+N++ ++P EIG LT L  LDL  +N  
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-- 247

Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSG 191
            L    P+ +  L  L+ L++  N  SG
Sbjct: 248 -LTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV 147
           NL+TL L   ++ D+  +  L  LE L L+ + I  L  
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	540
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.4
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
KOG4341	483	consensus F-box protein containing LRR [General fu	99.32
KOG4341	483	consensus F-box protein containing LRR [General fu	99.31
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.21
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.16
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.78
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.76
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.72
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.45
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.34
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.32
PLN03150	623	hypothetical protein; Provisional	98.31
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.3
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.23
PLN03150	623	hypothetical protein; Provisional	98.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.06
PRK15386	426	type III secretion protein GogB; Provisional	98.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.05
PRK15386	426	type III secretion protein GogB; Provisional	97.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.94
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.84
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.76
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.72
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.93
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.4
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.2
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.18
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.0
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.61
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.56
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.85
smart00370	26	LRR Leucine-rich repeats, outliers.	86.85

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=1.1e-28  Score=276.31  Aligned_cols=194  Identities=21%  Similarity=0.316  Sum_probs=128.0

Q ss_pred             cCCCeEEEccCCCCCC-CCC-cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-CCcccccCCCCcE
Q 009194           36 QKDPIAISLPHRDIQE-LPE-RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQT  112 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~-l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L~~  112 (540)
                      ..+++.++++++.+.. ++. +..+++|+.|++++|.+ ...+|.+++.++++|++|++++|.+.. +|.  +.+++|++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~  144 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET  144 (968)
T ss_pred             CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence            3478889998887743 333 33788999999998887 667888877788888888888887753 443  45677777


Q ss_pred             EEcCCCccCC--cccccCCCCCCEEEecCCCCc-ccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194          113 LCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (540)
Q Consensus       113 L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (540)
                      |++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|+.|++++|.
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~  223 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN  223 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence            7777777653  566777777777777777654 56666777777777777777644555554 6777777777777665


Q ss_pred             cccccccCCCccchhhccCCCCccEEEeecCCCC-CCCccccc-cCccEEEEEe
Q 009194          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS-VELQRYKIRI  241 (540)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~  241 (540)
                      +..        ..+..++++++|++|++++|... .+|..+.. ++|+.|.+..
T Consensus       224 l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  269 (968)
T PLN00113        224 LSG--------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ  269 (968)
T ss_pred             cCC--------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence            541        22334555566666666655532 33433333 5555555543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=1.5e-28  Score=275.48  Aligned_cols=454  Identities=15%  Similarity=0.109  Sum_probs=259.3

Q ss_pred             cCCCeEEEccCCCCC-CCCCcC--CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCC-CCCcccccCCCCc
Q 009194           36 QKDPIAISLPHRDIQ-ELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINLQ  111 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L~  111 (540)
                      .+.++.|++++|.+. .+|...  .+++||+|++++|.+ ...++.   ..+++|++|++++|.+. .+|..++++++|+
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc-ccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence            578889999988874 566532  788888888888876 444553   45788888888888775 5677788888888


Q ss_pred             EEEcCCCccCC--cccccCCCCCCEEEecCCCCc-ccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCC
Q 009194          112 TLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG  188 (540)
Q Consensus       112 ~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (540)
                      +|++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n  246 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN  246 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCc
Confidence            88888887654  677888888888888888665 57777888888888888887755566665 788888888888877


Q ss_pred             CcccccccCCCccchhhccCCCCccEEEeecCCCC-CCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      .+..        ..+..++++++|+.|++++|.+. .+|..+.. ++|+.|.++.+...... ......+++|+.|++.+
T Consensus       247 ~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        247 NLTG--------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI-PELVIQLQNLEILHLFS  317 (968)
T ss_pred             eecc--------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC-ChhHcCCCCCcEEECCC
Confidence            6541        23445667777777777777643 44444444 66777776544322110 01134556677777665


Q ss_pred             cccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCcee-eecc---------------
Q 009194          267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILH-IVGS---------------  330 (540)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~---------------  330 (540)
                      +.-...+  + .....+++|+.|.+.++.........   ++.+++|+.|+++++. ++. ++..               
T Consensus       318 n~~~~~~--~-~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~Ls~n~-l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        318 NNFTGKI--P-VALTSLPRLQVLQLWSNKFSGEIPKN---LGKHNNLTVLDLSTNN-LTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             CccCCcC--C-hhHhcCCCCCEEECcCCCCcCcCChH---HhCCCCCcEEECCCCe-eEeeCChhHhCcCCCCEEECcCC
Confidence            3211111  1 11123466666666554432222111   3345566666665552 211 1100               


Q ss_pred             ----ccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccc
Q 009194          331 ----VRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDD  406 (540)
Q Consensus       331 ----~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  406 (540)
                          ........+++|+.|++.++.--...+..    ...++.|+.|+++++. ++...+. ....+++|+.|++++|..
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE----FTKLPLVYFLDISNNN-LQGRINS-RKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeeeECChh----HhcCCCCCEEECcCCc-ccCccCh-hhccCCCCcEEECcCcee
Confidence                00002234455555555554322222211    3445666666666542 3333221 234556666666666554


Q ss_pred             cccccccCCCCCCCccceeeecccCCC--CCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccccccee
Q 009194          407 LKMIIGPDMEKPPTTQGFIEINAEDDP--VHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGV  484 (540)
Q Consensus       407 l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~  484 (540)
                      ...++..  ...+.|..+ +++.+...  .+.....+++|+.|++++|.-...+|  ..+.++++|++|++++|.-...+
T Consensus       465 ~~~~p~~--~~~~~L~~L-~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~  539 (968)
T PLN00113        465 FGGLPDS--FGSKRLENL-DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP--DELSSCKKLVSLDLSHNQLSGQI  539 (968)
T ss_pred             eeecCcc--cccccceEE-ECcCCccCCccChhhhhhhccCEEECcCCcceeeCC--hHHcCccCCCEEECCCCcccccC
Confidence            4333211  111333333 33333211  22234456677777777764433432  23456677777777776432222


Q ss_pred             ccccccCCCCccccccccceeecccCCCC-------CCCCCCCceEeecCCC
Q 009194          485 VNTTTLGGRDEFKVFPKLHYLSLHWLPKL-------SSFASPEDVIHTEMQP  529 (540)
Q Consensus       485 ~~~~~~~~~~~~~~~~~L~~L~l~~~p~L-------~~~~~l~~l~i~~c~~  529 (540)
                      +  +.      +..+++|++|+++++.-.       ..+.+|+.+++++|+-
T Consensus       540 p--~~------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        540 P--AS------FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             C--hh------HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            1  11      235677777777766553       2345577777777653

>PLN03210 Resistant to P

Probab=99.95  E-value=3.6e-27  Score=264.43  Aligned_cols=397  Identities=19%  Similarity=0.231  Sum_probs=219.2

Q ss_pred             CcchhhhHHHhhhcCCC-------EeEecCcchhhhhhhhhhcCCCeEEEccCCCCCCC--CC--cCCCCCccEEEcccC
Q 009194            1 MHDVIHVVAVSIATEER-------MFNVPNVADLEKKMEETIQKDPIAISLPHRDIQEL--PE--RLQCPNLQLFLLYTE   69 (540)
Q Consensus         1 mHdli~d~a~~~~~e~~-------~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l--~~--~~~~~~L~~L~l~~~   69 (540)
                      ||||+||||+++++++.       |+ +...+..+.+...+..++++.+++....++.+  ..  +.++++|+.|.+..+
T Consensus       490 MHdLl~~~~r~i~~~~~~~~~~r~~l-~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~  568 (1153)
T PLN03210        490 MHSLLQEMGKEIVRAQSNEPGEREFL-VDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK  568 (1153)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcceeE-eCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecc
Confidence            99999999999987552       22 33222222233334566778887765555332  11  337778888777554


Q ss_pred             CC-----CCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCC-CC
Q 009194           70 GN-----GPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS-NI  142 (540)
Q Consensus        70 ~~-----~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~-~~  142 (540)
                      ..     ....++.++..-...||.|.+.++.+..+|..+ ...+|++|++.++.+.. +..+..+++|++|+++++ .+
T Consensus       569 ~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l  647 (1153)
T PLN03210        569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL  647 (1153)
T ss_pred             cccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc
Confidence            21     012344443222346888888887777777766 46778888888877776 566777888888888776 45


Q ss_pred             cccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCC-
Q 009194          143 NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-  221 (540)
Q Consensus       143 ~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-  221 (540)
                      ..+|. ++.+++|++|++++|.....+|.. ++++++|+.|++++|....        ..+ .-.++++|+.|++++|. 
T Consensus       648 ~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~--------~Lp-~~i~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        648 KEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLE--------ILP-TGINLKSLYRLNLSGCSR  716 (1153)
T ss_pred             CcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcC--------ccC-CcCCCCCCCEEeCCCCCC
Confidence            66663 677778888888877767777766 6777888888877764331        111 11256677777777765 


Q ss_pred             CCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCccccc
Q 009194          222 AEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVV  301 (540)
Q Consensus       222 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  301 (540)
                      ...+|..  ..+|+.|.+....+...+   ....+++|+.|.+..                           +....-+.
T Consensus       717 L~~~p~~--~~nL~~L~L~~n~i~~lP---~~~~l~~L~~L~l~~---------------------------~~~~~l~~  764 (1153)
T PLN03210        717 LKSFPDI--STNISWLDLDETAIEEFP---SNLRLENLDELILCE---------------------------MKSEKLWE  764 (1153)
T ss_pred             ccccccc--cCCcCeeecCCCcccccc---ccccccccccccccc---------------------------cchhhccc
Confidence            2233221  134444444332221110   011223333333322                           11100000


Q ss_pred             --ccCc--cCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEee
Q 009194          302 --HELD--DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS  377 (540)
Q Consensus       302 --~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~  377 (540)
                        ..+.  ....+++|+.|.+++|+.+..++.     ..+.+++|+.|++.+|..++.++..     ..+++|+.|++++
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-----si~~L~~L~~L~Ls~C~~L~~LP~~-----~~L~sL~~L~Ls~  834 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-----SIQNLHKLEHLEIENCINLETLPTG-----INLESLESLDLSG  834 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccCh-----hhhCCCCCCEEECCCCCCcCeeCCC-----CCccccCEEECCC
Confidence              0000  011234555555555544443322     2344555555555555555544432     1345555555555


Q ss_pred             CCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCccc
Q 009194          378 CRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKY  457 (540)
Q Consensus       378 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~  457 (540)
                      |..+..+|.     ..++|+.|++++ ..++.+                        +..+..+++|+.|++.+|++++.
T Consensus       835 c~~L~~~p~-----~~~nL~~L~Ls~-n~i~~i------------------------P~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        835 CSRLRTFPD-----ISTNISDLNLSR-TGIEEV------------------------PWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CCccccccc-----cccccCEeECCC-CCCccC------------------------hHHHhcCCCCCEEECCCCCCcCc
Confidence            555544432     123455555544 233322                        22344567788888888888877


Q ss_pred             ccchhhhhhcCCCcEEEEeccccccee
Q 009194          458 LFSYSMVNSLGQLQHLEIRNCRSIEGV  484 (540)
Q Consensus       458 l~~~~~~~~l~~L~~L~i~~C~~L~~~  484 (540)
                      ++..  ...+++|+.+++++|++|+.+
T Consensus       885 l~~~--~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        885 VSLN--ISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             cCcc--cccccCCCeeecCCCcccccc
Confidence            7542  456777888888888777665

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=2.4e-23  Score=233.79  Aligned_cols=365  Identities=18%  Similarity=0.229  Sum_probs=261.6

Q ss_pred             CCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCC-------CCCcccccCC-CCcEEEcCCCccCC-cccccCC
Q 009194           59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-------SLPSSLGRLI-NLQTLCLDWCELAD-IAAIGQL  129 (540)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------~l~~~l~~l~-~L~~L~l~~~~~~~-~~~i~~l  129 (540)
                      .+.+.+.+.........+....|.++++|+.|.++.+...       .+|..+..++ +|++|.+.++.++. |..+ ..
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~  610 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP  610 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence            4455554444333234456677899999999999766421       3677777665 59999999998887 6665 67


Q ss_pred             CCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCC
Q 009194          130 KKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERL  209 (540)
Q Consensus       130 ~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l  209 (540)
                      .+|+.|++.++.+..+|.++..+++|+.|+++++..+..+|.  ++.+++|+.|++++|...        ...+..++++
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L--------~~lp~si~~L  680 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL--------VELPSSIQYL  680 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc--------cccchhhhcc
Confidence            899999999999999999999999999999999877788885  789999999999987543        1345667889


Q ss_pred             CCccEEEeecCC-CCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccce
Q 009194          210 TELTTLEIEVPD-AEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTED  288 (540)
Q Consensus       210 ~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  288 (540)
                      ++|+.|++++|. ...+|..+                         .+++|+.|.+++|.....++      ...++|+.
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-------------------------~l~sL~~L~Lsgc~~L~~~p------~~~~nL~~  729 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-------------------------NLKSLYRLNLSGCSRLKSFP------DISTNISW  729 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-------------------------CCCCCCEEeCCCCCCccccc------cccCCcCe
Confidence            999999999875 56666543                         23445555555533222221      12345666


Q ss_pred             eeeccccCcccccccCccCCCCccccEEeeccccCceeeeccc---cccccccCcccceecccccccccccccccCCCCC
Q 009194          289 LWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSV---RRVRCEVFPLLEALSLMFLTNLETICYSQLREDQ  365 (540)
Q Consensus       289 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  365 (540)
                      |.+.+.. ++.    ++....+++|++|.+.++.... +....   .......+++|+.|++++|+.+.+++..    .+
T Consensus       730 L~L~~n~-i~~----lP~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~  799 (1153)
T PLN03210        730 LDLDETA-IEE----FPSNLRLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQ  799 (1153)
T ss_pred             eecCCCc-ccc----ccccccccccccccccccchhh-ccccccccchhhhhccccchheeCCCCCCccccChh----hh
Confidence            6665433 222    2212357788888887654211 11000   0002234578999999999988888765    67


Q ss_pred             CCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCcc
Q 009194          366 SFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLT  445 (540)
Q Consensus       366 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~  445 (540)
                      .+++|+.|.+++|+.++.+|..   ..+++|++|++++|.++..++.                           ..++|+
T Consensus       800 ~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~---------------------------~~~nL~  849 (1153)
T PLN03210        800 NLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD---------------------------ISTNIS  849 (1153)
T ss_pred             CCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc---------------------------cccccC
Confidence            8999999999999999988653   2689999999999988876530                           136788


Q ss_pred             EEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCCCCCC
Q 009194          446 KVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSF  516 (540)
Q Consensus       446 ~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~L~~~  516 (540)
                      .|++.+. +++.+|.  .+..+++|+.|++.+|++++.++..        +..++.|+.+.+.+|++|+.+
T Consensus       850 ~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~--------~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        850 DLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN--------ISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             EeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCcc--------cccccCCCeeecCCCcccccc
Confidence            9998884 6777653  4688999999999999999987531        336788999999999988743

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.87  E-value=3.7e-22  Score=212.99  Aligned_cols=371  Identities=24%  Similarity=0.336  Sum_probs=227.8

Q ss_pred             CcchhhhHHHhhhc-----CCCEeEecCcchhhhhhhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCcc
Q 009194            1 MHDVIHVVAVSIAT-----EERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQ   75 (540)
Q Consensus         1 mHdli~d~a~~~~~-----e~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~   75 (540)
                      |||+|||||.++|+     +++++ +..+.+....|....+..+|++++.++.+..++....+++|++|.+.+|......
T Consensus       483 mHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~  561 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE  561 (889)
T ss_pred             eeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence            89999999999999     66644 5544444445666667889999999999999998889999999999998621366


Q ss_pred             ccHHHHhcCccCcEEEcCCCC-CCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCC-CCcccchhcCCC
Q 009194           76 VSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS-NINQLPVEIGQL  152 (540)
Q Consensus        76 ~~~~~~~~l~~L~~L~l~~~~-~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~-~~~~lp~~~~~l  152 (540)
                      ++.++|..++.|++||+++|. ..++|..++++.+||||+++++.++. |..+++|+.|.+|++..+ ....+|.....|
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L  641 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL  641 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhc
Confidence            777888999999999999874 56788888888888888888888887 788888888888888776 344444445557


Q ss_pred             CCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcccccc
Q 009194          153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSV  232 (540)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  232 (540)
                      ++||+|.+.... . .                             .+.....++.++.+|+.+.+..... .+...+   
T Consensus       642 ~~Lr~L~l~~s~-~-~-----------------------------~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l---  686 (889)
T KOG4658|consen  642 QSLRVLRLPRSA-L-S-----------------------------NDKLLLKELENLEHLENLSITISSV-LLLEDL---  686 (889)
T ss_pred             ccccEEEeeccc-c-c-----------------------------cchhhHHhhhcccchhhheeecchh-HhHhhh---
Confidence            777777765432 0 0                             0111223333344444433332221 000000   


Q ss_pred             CccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCcc
Q 009194          233 ELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPR  312 (540)
Q Consensus       233 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  312 (540)
                                           .....|..+.                       +.+.+..+...+.    ......+.+
T Consensus       687 ---------------------~~~~~L~~~~-----------------------~~l~~~~~~~~~~----~~~~~~l~~  718 (889)
T KOG4658|consen  687 ---------------------LGMTRLRSLL-----------------------QSLSIEGCSKRTL----ISSLGSLGN  718 (889)
T ss_pred             ---------------------hhhHHHHHHh-----------------------Hhhhhccccccee----ecccccccC
Confidence                                 0000111000                       1111111111111    111556777


Q ss_pred             ccEEeeccccCceeeeccccccccc-cCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHh
Q 009194          313 LKRLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK  391 (540)
Q Consensus       313 L~~L~l~~~~~l~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  391 (540)
                      |+.|.|.+|...+............ .|+++..+.+.+|...++..+..     -.|+|+.|.+..|+.+.+..+.  ..
T Consensus       719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~-----f~~~L~~l~l~~~~~~e~~i~~--~k  791 (889)
T KOG4658|consen  719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL-----FAPHLTSLSLVSCRLLEDIIPK--LK  791 (889)
T ss_pred             cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh-----ccCcccEEEEecccccccCCCH--HH
Confidence            7888888775433221111111112 37889999999998888877643     3589999999999888887543  44


Q ss_pred             hcccccEEEEcccccccccc-ccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCC
Q 009194          392 NLLRLQKVKVEDCDDLKMII-GPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQL  470 (540)
Q Consensus       392 ~l~~L~~L~l~~c~~l~~~~-~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L  470 (540)
                      .+..+..+.+. ++.+.... ....+.++++..+             .-.++.|+.+.+..||+++.+         |.+
T Consensus       792 ~~~~l~~~i~~-f~~~~~l~~~~~l~~l~~i~~~-------------~l~~~~l~~~~ve~~p~l~~~---------P~~  848 (889)
T KOG4658|consen  792 ALLELKELILP-FNKLEGLRMLCSLGGLPQLYWL-------------PLSFLKLEELIVEECPKLGKL---------PLL  848 (889)
T ss_pred             HhhhcccEEec-ccccccceeeecCCCCceeEec-------------ccCccchhheehhcCcccccC---------ccc
Confidence            55555553332 23333331 1222222222111             112455888888888888776         677


Q ss_pred             cEEEEecc-cccceec
Q 009194          471 QHLEIRNC-RSIEGVV  485 (540)
Q Consensus       471 ~~L~i~~C-~~L~~~~  485 (540)
                      .++.|.+| +.+...+
T Consensus       849 ~~~~i~~~~~~~~~~~  864 (889)
T KOG4658|consen  849 STLTIVGCEEKLKEYP  864 (889)
T ss_pred             cccceeccccceeecC
Confidence            78888887 5555543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.87  E-value=1.2e-22  Score=196.02  Aligned_cols=371  Identities=18%  Similarity=0.181  Sum_probs=257.1

Q ss_pred             hhhcCCCeEEEccCCCCCCCCCcC----CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCC
Q 009194           33 ETIQKDPIAISLPHRDIQELPERL----QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI  108 (540)
Q Consensus        33 ~~~~~~l~~l~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~  108 (540)
                      +..+-..+-++.++..++.+....    -.+..++|++++|..  ..+-...|.++++|+.+++.+|.++.+|.......
T Consensus        48 a~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl--~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sg  125 (873)
T KOG4194|consen   48 ATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL--SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESG  125 (873)
T ss_pred             CcCCCCceeeecCccccccccccccCCcCccceeeeecccccc--ccCcHHHHhcCCcceeeeeccchhhhccccccccc
Confidence            345667888899988887653321    234567899999997  55555567899999999999999999999888888


Q ss_pred             CCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEc
Q 009194          109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (540)
Q Consensus       109 ~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (540)
                      ||+.|++.+|.|+.  -+.+.-++.|+.||++.|.+..+|.. +..-.++++|++++|. ++.+....+..+.+|..|.+
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeec
Confidence            99999999999987  38899999999999999999988765 6666899999999988 66766666788889999999


Q ss_pred             cCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccccccccccEEE
Q 009194          186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMM  263 (540)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  263 (540)
                      +.|.++..+        +..|+++++|+.|++..|.+..+......  ++|+.+.+..+++...                
T Consensus       205 srNrittLp--------~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL----------------  260 (873)
T KOG4194|consen  205 SRNRITTLP--------QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL----------------  260 (873)
T ss_pred             ccCcccccC--------HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc----------------
Confidence            999887322        35678899999999998886543221111  4455554433332221                


Q ss_pred             EeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccc
Q 009194          264 LKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLE  343 (540)
Q Consensus       264 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~  343 (540)
                                  .+|....+.++++|.+.... +..+...  .+-++..|+.|+++.. .+..+-.+    .=..+++|+
T Consensus       261 ------------~DG~Fy~l~kme~l~L~~N~-l~~vn~g--~lfgLt~L~~L~lS~N-aI~rih~d----~WsftqkL~  320 (873)
T KOG4194|consen  261 ------------DDGAFYGLEKMEHLNLETNR-LQAVNEG--WLFGLTSLEQLDLSYN-AIQRIHID----SWSFTQKLK  320 (873)
T ss_pred             ------------cCcceeeecccceeecccch-hhhhhcc--cccccchhhhhccchh-hhheeecc----hhhhcccce
Confidence                        23333334555555554322 1111110  1346778888888776 44444221    224567888


Q ss_pred             eecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccc
Q 009194          344 ALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG  423 (540)
Q Consensus       344 ~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~  423 (540)
                      .|++++ ++++.+..+.   +..+..|++|+++. +++..+. .+.+..+.+|++|+++. +.+....            
T Consensus       321 ~LdLs~-N~i~~l~~~s---f~~L~~Le~LnLs~-Nsi~~l~-e~af~~lssL~~LdLr~-N~ls~~I------------  381 (873)
T KOG4194|consen  321 ELDLSS-NRITRLDEGS---FRVLSQLEELNLSH-NSIDHLA-EGAFVGLSSLHKLDLRS-NELSWCI------------  381 (873)
T ss_pred             eEeccc-cccccCChhH---HHHHHHhhhhcccc-cchHHHH-hhHHHHhhhhhhhcCcC-CeEEEEE------------
Confidence            888876 6777777665   45677888888887 4677763 34556778888888886 4443321            


Q ss_pred             eeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccc
Q 009194          424 FIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR  479 (540)
Q Consensus       424 l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~  479 (540)
                          .+    .......+++|++|.+.+ .+++.++.. .+.++++||+|++.+-+
T Consensus       382 ----ED----aa~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  382 ----ED----AAVAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ----ec----chhhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCc
Confidence                11    112233578888888888 578888653 46778889999887643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=6.8e-23  Score=197.65  Aligned_cols=353  Identities=16%  Similarity=0.143  Sum_probs=267.0

Q ss_pred             hhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCC
Q 009194           34 TIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL  110 (540)
Q Consensus        34 ~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L  110 (540)
                      ..+...+.|++++|.+..+..  +.++++|+.+.+..|..  ..+|... ....+|+.|++.+|.|..+. +.+..++.|
T Consensus        75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~al  151 (873)
T KOG4194|consen   75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPAL  151 (873)
T ss_pred             cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhccccc-ccccceeEEeeeccccccccHHHHHhHhhh
Confidence            456778899999999966543  45999999999999986  7777522 33556999999999998764 467889999


Q ss_pred             cEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccC
Q 009194          111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (540)
Q Consensus       111 ~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (540)
                      |+||++.|.++. + ..+..-.++++|++++|.|+.+..+ +..+.+|..|.+++|. +..+|...+.++++|+.|++..
T Consensus       152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccc
Confidence            999999999988 4 7788888999999999999977655 8889999999999998 8899998888999999999999


Q ss_pred             CCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCC----CCCCCCccccccccccE
Q 009194          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDG----PEDEFDPLLVKSEASRL  261 (540)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~----~~~~~~~~~~~~~~L~~  261 (540)
                      |.+...        ....|..+++|+.|.+..|++..+..+...  .+++.|++..+..    ..|     +..++.|+.
T Consensus       231 N~iriv--------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~-----lfgLt~L~~  297 (873)
T KOG4194|consen  231 NRIRIV--------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW-----LFGLTSLEQ  297 (873)
T ss_pred             cceeee--------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc-----ccccchhhh
Confidence            887622        124678899999999999998888777544  8999999976553    235     778899999


Q ss_pred             EEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcc
Q 009194          262 MMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPL  341 (540)
Q Consensus       262 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  341 (540)
                      |+++... +..++...|  ...++|+.|+++... ++.+...  .+..+..|+.|.+++. .+..+.+.    ...++.+
T Consensus       298 L~lS~Na-I~rih~d~W--sftqkL~~LdLs~N~-i~~l~~~--sf~~L~~Le~LnLs~N-si~~l~e~----af~~lss  366 (873)
T KOG4194|consen  298 LDLSYNA-IQRIHIDSW--SFTQKLKELDLSSNR-ITRLDEG--SFRVLSQLEELNLSHN-SIDHLAEG----AFVGLSS  366 (873)
T ss_pred             hccchhh-hheeecchh--hhcccceeEeccccc-cccCChh--HHHHHHHhhhhccccc-chHHHHhh----HHHHhhh
Confidence            9998722 244443333  346899999987643 3333111  1456789999999887 55555332    5567889


Q ss_pred             cceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCC
Q 009194          342 LEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKP  418 (540)
Q Consensus       342 L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  418 (540)
                      |+.|+++. +++...-......+..+++|+.|.+.+ ++++.++- ..+..+++||+|++-+ +-+.++-...++..
T Consensus       367 L~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  367 LHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGD-NAIASIQPNAFEPM  439 (873)
T ss_pred             hhhhcCcC-CeEEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCC-Ccceeecccccccc
Confidence            99999986 333221111111155699999999999 58999954 4567899999999988 55666665555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=4.4e-22  Score=193.51  Aligned_cols=340  Identities=21%  Similarity=0.239  Sum_probs=206.9

Q ss_pred             cCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCC--CCCcccccCCCCcE
Q 009194           36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS--SLPSSLGRLINLQT  112 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~  112 (540)
                      ...++.|.+....+..+|+-. .+.+|++|.+..|..  .++..+. +.++.||.+.++.|++.  .+|..+-.+.-|.+
T Consensus        31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L--~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~  107 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQL--ISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI  107 (1255)
T ss_pred             hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhh--Hhhhhhh-ccchhhHHHhhhccccccCCCCchhccccccee
Confidence            445677777777777777633 777888888888775  4555544 67888888888888764  57777778888888


Q ss_pred             EEcCCCccCC-cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCc
Q 009194          113 LCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       113 L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (540)
                      |++++|.+++ |..+...+++-+|+++.|+|.++|.. +-+++.|-.||+++|. ++.+|++ ++++..|+.|.+++|..
T Consensus       108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChh
Confidence            8888888777 78888888888888888888888876 5678888888888877 7788887 78888888888888766


Q ss_pred             ccccccCCCccchhhccCCCCccEEEeecCC--CCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecc
Q 009194          191 GWEKVEGGSNASLVELERLTELTTLEIEVPD--AEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI  267 (540)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  267 (540)
                      ..        .-+.++..+..|+.|.+++..  ...+|..+-. .+|..+.++.++.+..+  ......++|+.|.+++ 
T Consensus       186 ~h--------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP--ecly~l~~LrrLNLS~-  254 (1255)
T KOG0444|consen  186 NH--------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP--ECLYKLRNLRRLNLSG-  254 (1255)
T ss_pred             hH--------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch--HHHhhhhhhheeccCc-
Confidence            41        112344455566677777665  4566666544 67777777665544331  1144566777777766 


Q ss_pred             ccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecc
Q 009194          268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL  347 (540)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l  347 (540)
                         +.+.........-.+|+.|.++...- +.....   ...++.|+.|++.+. +++.-+   ...+.+.+..|+.+..
T Consensus       255 ---N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~a---vcKL~kL~kLy~n~N-kL~FeG---iPSGIGKL~~Levf~a  323 (1255)
T KOG0444|consen  255 ---NKITELNMTEGEWENLETLNLSRNQL-TVLPDA---VCKLTKLTKLYANNN-KLTFEG---IPSGIGKLIQLEVFHA  323 (1255)
T ss_pred             ---CceeeeeccHHHHhhhhhhccccchh-ccchHH---HhhhHHHHHHHhccC-cccccC---CccchhhhhhhHHHHh
Confidence               22221111111124445554443221 111111   234556666655544 232211   1114445555555555


Q ss_pred             cccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccc
Q 009194          348 MFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI  410 (540)
Q Consensus       348 ~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  410 (540)
                      .+ +.++-.|.+    ...|++|+.|++.. +++-.+|.  .+.-++-|+.|++...+++.--
T Consensus       324 an-N~LElVPEg----lcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  324 AN-NKLELVPEG----LCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             hc-cccccCchh----hhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccCC
Confidence            54 344444433    44566666666653 45555533  2455566666666666666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.80  E-value=2.1e-21  Score=188.82  Aligned_cols=366  Identities=19%  Similarity=0.213  Sum_probs=229.9

Q ss_pred             hcCCCeEEEccCCCC--CCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCc
Q 009194           35 IQKDPIAISLPHRDI--QELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~--~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~  111 (540)
                      +.+-+|-+++++|++  ..+|... .+..++-|-+.....  ..+|.+. +.+.+|..|++.+|++..+-..++.++.||
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence            456689999999998  4567655 778888888887775  7788776 889999999999999877766678889999


Q ss_pred             EEEcCCCccCC---cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCC
Q 009194          112 TLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG  188 (540)
Q Consensus       112 ~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (540)
                      .+.+++|.+..   |..|.++..|.+||++.|++++.|..+..-+++-.|++++|. ++.+|..++-+++.|-.|++++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc
Confidence            99999998763   788999999999999999999999999999999999999988 88999888888999999999988


Q ss_pred             CcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccc
Q 009194          189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK  268 (540)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  268 (540)
                      ...         ..+++...+.+|++|++++|+...+.-.                       -+..+++|+.|++++..
T Consensus       161 rLe---------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr-----------------------QLPsmtsL~vLhms~Tq  208 (1255)
T KOG0444|consen  161 RLE---------MLPPQIRRLSMLQTLKLSNNPLNHFQLR-----------------------QLPSMTSLSVLHMSNTQ  208 (1255)
T ss_pred             hhh---------hcCHHHHHHhhhhhhhcCCChhhHHHHh-----------------------cCccchhhhhhhccccc
Confidence            776         5678888888999999998875432211                       02234556666666511


Q ss_pred             c-ccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecc
Q 009194          269 K-VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL  347 (540)
Q Consensus       269 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l  347 (540)
                      . ..++  |..+ ..+.+|..++++. .++..+...   +-.+++|+.|.+++. +++.+..     ..+...+|+.|.+
T Consensus       209 RTl~N~--Ptsl-d~l~NL~dvDlS~-N~Lp~vPec---ly~l~~LrrLNLS~N-~iteL~~-----~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  209 RTLDNI--PTSL-DDLHNLRDVDLSE-NNLPIVPEC---LYKLRNLRRLNLSGN-KITELNM-----TEGEWENLETLNL  275 (1255)
T ss_pred             chhhcC--CCch-hhhhhhhhccccc-cCCCcchHH---HhhhhhhheeccCcC-ceeeeec-----cHHHHhhhhhhcc
Confidence            1 0011  1110 1123333333321 111111111   224455555555554 3333321     2333445555555


Q ss_pred             cccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeee
Q 009194          348 MFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEI  427 (540)
Q Consensus       348 ~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i  427 (540)
                      +. +.++.+|..    .-.+++|+.|.+.+ ++++.-..++++..+..|+.+...+ ++++-                  
T Consensus       276 Sr-NQLt~LP~a----vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LEl------------------  330 (1255)
T KOG0444|consen  276 SR-NQLTVLPDA----VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLEL------------------  330 (1255)
T ss_pred             cc-chhccchHH----HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-ccccc------------------
Confidence            54 344444433    33345555555444 2333322233344444455444443 33332                  


Q ss_pred             cccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccce
Q 009194          428 NAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG  483 (540)
Q Consensus       428 ~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~  483 (540)
                            .+.++..+++|+.|.+. |..|-.+|  ..++-++.|+.|+++.-|+|.-
T Consensus       331 ------VPEglcRC~kL~kL~L~-~NrLiTLP--eaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  331 ------VPEGLCRCVKLQKLKLD-HNRLITLP--EAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             ------CchhhhhhHHHHHhccc-ccceeech--hhhhhcCCcceeeccCCcCccC
Confidence                  34455556666666654 34555553  3345667777777776666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=4.9e-21  Score=194.46  Aligned_cols=162  Identities=19%  Similarity=0.300  Sum_probs=102.3

Q ss_pred             CCCCccccEEeeccccCceeeecccc---------------------ccccccCcccceecccccccccccccccCCCCC
Q 009194          307 GEGFPRLKRLLVTDCSEILHIVGSVR---------------------RVRCEVFPLLEALSLMFLTNLETICYSQLREDQ  365 (540)
Q Consensus       307 ~~~~~~L~~L~l~~~~~l~~~~~~~~---------------------~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  365 (540)
                      .+.+..|+.|++... ++...++...                     ......++.|+.|.+.+ +.+++-++..   +.
T Consensus       306 le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~---l~  380 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPV---LV  380 (1081)
T ss_pred             ccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhh---hc
Confidence            345778888888765 4443322100                     11344556677777776 5677666654   66


Q ss_pred             CCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCcc
Q 009194          366 SFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLT  445 (540)
Q Consensus       366 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~  445 (540)
                      .|++||.|++++ +++..+ |.....++..|++|.++| ++++.++                        +.+..++.|+
T Consensus       381 ~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSG-NkL~~Lp------------------------~tva~~~~L~  433 (1081)
T KOG0618|consen  381 NFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSG-NKLTTLP------------------------DTVANLGRLH  433 (1081)
T ss_pred             cccceeeeeecc-cccccC-CHHHHhchHHhHHHhccc-chhhhhh------------------------HHHHhhhhhH
Confidence            789999999988 578877 456678888899999998 6777664                        2233455666


Q ss_pred             EEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCC
Q 009194          446 KVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK  512 (540)
Q Consensus       446 ~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~  512 (540)
                      .|...+ ..|..+|   -+..+++|+.+|++ |.+|..+...+..+       -|.|++|++.|-+.
T Consensus       434 tL~ahs-N~l~~fP---e~~~l~qL~~lDlS-~N~L~~~~l~~~~p-------~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  434 TLRAHS-NQLLSFP---ELAQLPQLKVLDLS-CNNLSEVTLPEALP-------SPNLKYLDLSGNTR  488 (1081)
T ss_pred             HHhhcC-Cceeech---hhhhcCcceEEecc-cchhhhhhhhhhCC-------CcccceeeccCCcc
Confidence            654443 2344443   23456777777774 67777765544433       16777777776664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.75  E-value=3.4e-21  Score=178.16  Aligned_cols=260  Identities=24%  Similarity=0.236  Sum_probs=185.5

Q ss_pred             CCeEEEccCCCCCCCCC-cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcC
Q 009194           38 DPIAISLPHRDIQELPE-RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (540)
Q Consensus        38 ~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~  116 (540)
                      .+..+.++.|+++.+.+ ..++..+.++.+.+|..  .+.|.++ +.+..++.++++++.+..+|+.++.+..|+.++.+
T Consensus        46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l--~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL--SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS  122 (565)
T ss_pred             chhhhhhccCchhhccHhhhcccceeEEEeccchh--hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence            35677788888866544 44788888888888885  6777776 78888888899988888888888888888889888


Q ss_pred             CCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       117 ~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      ++.+.. +++++.+..|..++...|++.++|.++..+.+|..+++.++. ....|+..+. ++.|++++...|...    
T Consensus       123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~----  196 (565)
T KOG0472|consen  123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE----  196 (565)
T ss_pred             ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh----
Confidence            888877 788888888888888888888888888888888888888877 7777777444 888888887776554    


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccccccc-c
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL-Q  274 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~  274 (540)
                           ..+++++.+.+|..|++..|++..+|..-.+..|+.|++....+... ......+++++..|++..    ..+ .
T Consensus       197 -----tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRd----Nklke  266 (565)
T KOG0472|consen  197 -----TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRD----NKLKE  266 (565)
T ss_pred             -----cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeeccc----ccccc
Confidence                 56777888888888888888877777544446677666643332211 112244667777777766    222 2


Q ss_pred             cchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeecccc
Q 009194          275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS  322 (540)
Q Consensus       275 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  322 (540)
                      .|+++. .+++|+.|++++.. +.....   .++++ .|+.|.+.+.|
T Consensus       267 ~Pde~c-lLrsL~rLDlSNN~-is~Lp~---sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  267 VPDEIC-LLRSLERLDLSNND-ISSLPY---SLGNL-HLKFLALEGNP  308 (565)
T ss_pred             CchHHH-HhhhhhhhcccCCc-cccCCc---ccccc-eeeehhhcCCc
Confidence            233332 35677777776532 122111   25566 77777777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.75  E-value=3e-21  Score=178.47  Aligned_cols=410  Identities=18%  Similarity=0.215  Sum_probs=207.9

Q ss_pred             CCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        37 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      ..+..+.+++|...++|..+ ....+..++.+.|..  .++|..+ .....|+.++++++.+.++|+.++.+..|..++.
T Consensus        68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~l--s~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~  144 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKL--SELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA  144 (565)
T ss_pred             cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchH--hhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence            33455666666555554433 455555555555553  4455444 4555555555555555555555555555555555


Q ss_pred             CCCccCC-cccccCCCCCCEEEecCCCCc-----------------------ccchhcCCCCCCCEEECCCCccccccch
Q 009194          116 DWCELAD-IAAIGQLKKLEILSLAYSNIN-----------------------QLPVEIGQLTRLQLLDLSNCWWLEVIAP  171 (540)
Q Consensus       116 ~~~~~~~-~~~i~~l~~L~~L~l~~~~~~-----------------------~lp~~~~~l~~L~~L~l~~~~~~~~~~~  171 (540)
                      .+|.++. |+.+..+.+|..+++.+|.++                       .+|+.++.+.+|..|++..|. +..+|.
T Consensus       145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe  223 (565)
T KOG0472|consen  145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE  223 (565)
T ss_pred             cccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC
Confidence            5555544 455555555555555555444                       444444444444444444444 444442


Q ss_pred             hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCC
Q 009194          172 NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFD  250 (540)
Q Consensus       172 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~  250 (540)
                        ++.+..|.+|.++.|.+...        -.+.+++++++..||+..|+...+|.++.. .+|++|.++..++....  
T Consensus       224 --f~gcs~L~Elh~g~N~i~~l--------pae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp--  291 (565)
T KOG0472|consen  224 --FPGCSLLKELHVGENQIEML--------PAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLP--  291 (565)
T ss_pred             --CCccHHHHHHHhcccHHHhh--------HHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCC--
Confidence              44455555555444444311        123346889999999999999999999877 88999999887765541  


Q ss_pred             ccccccccccEEEEecccccccccc---chhhhhhhcccce-eeeccccC---cccccc-----cCccCCCCccccEEee
Q 009194          251 PLLVKSEASRLMMLKGIKKVSILQE---NDGTKMLLQRTED-LWLETLEG---VQSVVH-----ELDDGEGFPRLKRLLV  318 (540)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~~L~~-L~l~~~~~---~~~~~~-----~~~~~~~~~~L~~L~l  318 (540)
                      +..+.+ +|+.|.+.|.|- ..++.   ..|....++-|+. ..-.+.+.   .+....     .++.....-..+.|.+
T Consensus       292 ~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~  369 (565)
T KOG0472|consen  292 YSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV  369 (565)
T ss_pred             cccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence            224445 777777777442 22211   2233333332222 11111111   111101     1111222336667777


Q ss_pred             ccccCceeeeccccccccccCcccceecccc----------------------cccccccccccCCCCCCCCCCCeEEEe
Q 009194          319 TDCSEILHIVGSVRRVRCEVFPLLEALSLMF----------------------LTNLETICYSQLREDQSFSNLRIINVD  376 (540)
Q Consensus       319 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~----------------------c~~l~~~~~~~~~~~~~~~~L~~L~l~  376 (540)
                      ++- +++.+++...  ..+.---....+++.                      -.+..+|....   ...+++|..|+++
T Consensus       370 s~~-qlt~VPdEVf--ea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~---l~~l~kLt~L~L~  443 (565)
T KOG0472|consen  370 SDK-QLTLVPDEVF--EAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE---LSQLQKLTFLDLS  443 (565)
T ss_pred             ccc-ccccCCHHHH--HHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH---HHhhhcceeeecc
Confidence            665 4555533211  000000011111111                      01122222222   5678999999998


Q ss_pred             eCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeec-ccCCC-CCCCccCCCCccEEEEccCCC
Q 009194          377 SCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEIN-AEDDP-VHQGIYCCQNLTKVTVWSCHR  454 (540)
Q Consensus       377 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~-~~~~~-~~~~~~~~~~L~~L~l~~C~~  454 (540)
                      + +-+.++|..  ...+.+|+.|+++. +.....|..-- ....+..+ .++ +.... -.+++.++.+|..|++.+ ..
T Consensus       444 N-N~Ln~LP~e--~~~lv~Lq~LnlS~-NrFr~lP~~~y-~lq~lEtl-las~nqi~~vd~~~l~nm~nL~tLDL~n-Nd  516 (565)
T KOG0472|consen  444 N-NLLNDLPEE--MGSLVRLQTLNLSF-NRFRMLPECLY-ELQTLETL-LASNNQIGSVDPSGLKNMRNLTTLDLQN-ND  516 (565)
T ss_pred             c-chhhhcchh--hhhhhhhheecccc-cccccchHHHh-hHHHHHHH-HhccccccccChHHhhhhhhcceeccCC-Cc
Confidence            8 467888654  34567799999987 35555441100 00000000 000 00000 122345666777777666 34


Q ss_pred             cccccchhhhhhcCCCcEEEEeccc
Q 009194          455 LKYLFSYSMVNSLGQLQHLEIRNCR  479 (540)
Q Consensus       455 l~~l~~~~~~~~l~~L~~L~i~~C~  479 (540)
                      +..+|  ..++++++|++|+++|-|
T Consensus       517 lq~IP--p~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  517 LQQIP--PILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhCC--hhhccccceeEEEecCCc
Confidence            55654  346777777777777754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.70  E-value=3.6e-19  Score=181.04  Aligned_cols=87  Identities=23%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             CCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcC
Q 009194           38 DPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (540)
Q Consensus        38 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~  116 (540)
                      ++.+|++++|.+..+|.-+ .++.|+.|.++.|.+  ..++.+. +++++|+++.+.+|....+|.++.++++|++|+++
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i--~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI--RSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhH--hhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence            4888999988888887755 778889999988886  6666554 78899999999999888889888999999999998


Q ss_pred             CCccCC-ccccc
Q 009194          117 WCELAD-IAAIG  127 (540)
Q Consensus       117 ~~~~~~-~~~i~  127 (540)
                      .|.+.. |..+.
T Consensus       123 ~N~f~~~Pl~i~  134 (1081)
T KOG0618|consen  123 FNHFGPIPLVIE  134 (1081)
T ss_pred             hhccCCCchhHH
Confidence            887655 44333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3.1e-18  Score=140.53  Aligned_cols=170  Identities=26%  Similarity=0.395  Sum_probs=129.4

Q ss_pred             CCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccc
Q 009194           48 DIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAI  126 (540)
Q Consensus        48 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i  126 (540)
                      .+++++..+.+.+++.|.++.|..  ..++..+ ..+.+|++|++.+|+++++|.+++.+++|+.|++.-|++.. |..|
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNKl--~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf   98 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNKL--TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF   98 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCce--eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence            345666677777777888888875  5666666 67888888888888888888888888888888888877666 7888


Q ss_pred             cCCCCCCEEEecCCCCc--ccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchh
Q 009194          127 GQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLV  204 (540)
Q Consensus       127 ~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  204 (540)
                      +.++.|++||+.+|.+.  .+|..+-.|+.|+.|+++++. .+-+|.+ ++++++||.|.+..|...         +.+.
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll---------~lpk  167 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL---------SLPK  167 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh---------hCcH
Confidence            88888888888887665  677777778888888888877 6777777 788888888887777655         5566


Q ss_pred             hccCCCCccEEEeecCCCCCCCccccc
Q 009194          205 ELERLTELTTLEIEVPDAEILPPDFVS  231 (540)
Q Consensus       205 ~l~~l~~L~~L~l~~~~~~~~~~~~~~  231 (540)
                      +++.+.+|+.|.|.+|....+|..++.
T Consensus       168 eig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             HHHHHHHHHHHhcccceeeecChhhhh
Confidence            777788888888888887777766443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=4.5e-17  Score=133.81  Aligned_cols=153  Identities=22%  Similarity=0.322  Sum_probs=140.9

Q ss_pred             hhcCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcE
Q 009194           34 TIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (540)
Q Consensus        34 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  112 (540)
                      .-.+.+.++.++.|.+..+|..+ .+.+|+.|++++|.+  .++|.++ +.+++||.|++.-|.+..+|..++.++.|++
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCCCchhhh
Confidence            34678899999999998887755 999999999999996  8888887 8999999999999999999999999999999


Q ss_pred             EEcCCCccCC---cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194          113 LCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (540)
Q Consensus       113 L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (540)
                      ||+.+|++.+   |..|..+..|+.|++++|.+..+|..++++++||.|.+..+. +-++|.+ ++.+++|++|.+.+|.
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccce
Confidence            9999999775   788888999999999999999999999999999999999988 7789988 8999999999999998


Q ss_pred             cc
Q 009194          190 SG  191 (540)
Q Consensus       190 ~~  191 (540)
                      ..
T Consensus       185 l~  186 (264)
T KOG0617|consen  185 LT  186 (264)
T ss_pred             ee
Confidence            76

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=2.6e-12  Score=135.17  Aligned_cols=171  Identities=20%  Similarity=0.167  Sum_probs=110.4

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      -.+-..++++.+.+..+|.... ++|+.|.+.+|.+  ..+|.    ..++|++|++++|+++.+|..   .++|++|++
T Consensus       200 ~~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~L--t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L  269 (788)
T PRK15387        200 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSI  269 (788)
T ss_pred             cCCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcC--CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence            3445677888887777776432 4688888888775  44553    357788888888888777642   357788888


Q ss_pred             CCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       116 ~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      .+|.++. |..   ..+|+.|++++|.++.+|..   .++|++|++++|. +..+|..    ..+|+.|++++|.+..  
T Consensus       270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~--  336 (788)
T PRK15387        270 FSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS--  336 (788)
T ss_pred             cCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc--
Confidence            8887766 332   24677788888887777752   4678888888876 5555541    2356677777766541  


Q ss_pred             ccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEe
Q 009194          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRI  241 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  241 (540)
                              ++.+  ..+|+.|++++|.+..+|..  ..+|+.|.+..
T Consensus       337 --------LP~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~  371 (788)
T PRK15387        337 --------LPTL--PSGLQELSVSDNQLASLPTL--PSELYKLWAYN  371 (788)
T ss_pred             --------cccc--ccccceEecCCCccCCCCCC--Ccccceehhhc
Confidence                    1111  13678888888877766642  24555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.42  E-value=3.1e-12  Score=134.63  Aligned_cols=251  Identities=17%  Similarity=0.109  Sum_probs=172.1

Q ss_pred             EeEecCcchhhhhhhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCC
Q 009194           18 MFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS   97 (540)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   97 (540)
                      .+.+.+. .++++|. .++.+++.|++.+|.+..+|..  .++|++|++++|.+  ..+|.    ..++|+.|++.+|.+
T Consensus       205 ~LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L--tsLP~----lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        205 VLNVGES-GLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPL  274 (788)
T ss_pred             EEEcCCC-CCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc--CcccC----cccccceeeccCCch
Confidence            4434433 5566665 4677899999999999988874  68999999999986  55653    357899999999999


Q ss_pred             CCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhc
Q 009194           98 SSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISK  176 (540)
Q Consensus        98 ~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  176 (540)
                      ..+|...   .+|+.|++++|.++. |.   ..++|+.|++++|.+..+|..   ..+|+.|++++|. +..+|.  +  
T Consensus       275 ~~Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~--l--  340 (788)
T PRK15387        275 THLPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPT--L--  340 (788)
T ss_pred             hhhhhch---hhcCEEECcCCccccccc---cccccceeECCCCccccCCCC---cccccccccccCc-cccccc--c--
Confidence            8877633   568899999999887 54   247899999999999988763   3467888898887 666764  1  


Q ss_pred             CCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCcccccc
Q 009194          177 LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKS  256 (540)
Q Consensus       177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  256 (540)
                      ..+|+.|++++|.+...          +.+  ..+|+.|++++|.+..+|..  ..+|+.|.++.+.+....     ...
T Consensus       341 p~~Lq~LdLS~N~Ls~L----------P~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP-----~l~  401 (788)
T PRK15387        341 PSGLQELSVSDNQLASL----------PTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP-----VLP  401 (788)
T ss_pred             ccccceEecCCCccCCC----------CCC--CcccceehhhccccccCccc--ccccceEEecCCcccCCC-----Ccc
Confidence            25799999999887621          111  24678888988888777753  257888888766544331     223


Q ss_pred             ccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeecccc
Q 009194          257 EASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS  322 (540)
Q Consensus       257 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  322 (540)
                      ++|+.|++++.. ...++      ..+.+|+.|.+.+.. ++.+...   +..+++|+.|++++++
T Consensus       402 s~L~~LdLS~N~-LssIP------~l~~~L~~L~Ls~Nq-Lt~LP~s---l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        402 SELKELMVSGNR-LTSLP------MLPSGLLSLSVYRNQ-LTRLPES---LIHLSSETTVNLEGNP  456 (788)
T ss_pred             cCCCEEEccCCc-CCCCC------cchhhhhhhhhccCc-ccccChH---HhhccCCCeEECCCCC
Confidence            578888887722 12221      123455666655432 2222221   3456777777777764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.40  E-value=2.9e-13  Score=145.33  Aligned_cols=73  Identities=23%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             ccccCcccceecccccccccccc--cccCCCCC-CCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccccccccc
Q 009194          335 RCEVFPLLEALSLMFLTNLETIC--YSQLREDQ-SFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMII  411 (540)
Q Consensus       335 ~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  411 (540)
                      ....+++|+.|.|.+|...+...  .+... .. .|+++..+.+.+|..+++..+   ....++|+.|.+.+|+.++++.
T Consensus       712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~-~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  712 SLGSLGNLEELSILDCGISEIVIEWEESLI-VLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             ccccccCcceEEEEcCCCchhhcccccccc-hhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCC
Confidence            67889999999999998754321  11110 22 277888888889988887643   3456889999999999988775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.37  E-value=3.9e-12  Score=134.68  Aligned_cols=250  Identities=14%  Similarity=0.148  Sum_probs=160.7

Q ss_pred             hhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEE
Q 009194           34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL  113 (540)
Q Consensus        34 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  113 (540)
                      +...+...+.+.++.+..+|..+ .++++.|++++|.+  ..+|..++   .+|++|++++|.+..+|..+.  .+|+.|
T Consensus       175 Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L  246 (754)
T PRK15370        175 CLKNNKTELRLKILGLTTIPACI-PEQITTLILDNNEL--KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEM  246 (754)
T ss_pred             hcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEE
Confidence            34456778888888887777643 35788888888876  56776553   578888888888888876553  478888


Q ss_pred             EcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194          114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (540)
Q Consensus       114 ~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (540)
                      ++++|.+.. |..+.  .+|+.|++++|.++.+|..+.  .+|++|++++|. +..+|.. +  .++|+.|++++|.+..
T Consensus       247 ~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~  318 (754)
T PRK15370        247 ELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTA  318 (754)
T ss_pred             ECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCcccc
Confidence            888888777 55543  478888888888888887654  578888888887 6666654 2  2467888888876651


Q ss_pred             ccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccc
Q 009194          193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI  272 (540)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  272 (540)
                               .+..+  .++|+.|++.+|.+..+|..+ .++|+.|.++.+.+...+    ....+.|+.|+++++. ...
T Consensus       319 ---------LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L~~LP----~~lp~~L~~LdLs~N~-Lt~  381 (754)
T PRK15370        319 ---------LPETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQITVLP----ETLPPTITTLDVSRNA-LTN  381 (754)
T ss_pred             ---------CCccc--cccceeccccCCccccCChhh-cCcccEEECCCCCCCcCC----hhhcCCcCEEECCCCc-CCC
Confidence                     11112  257888888888877776543 267788877665543321    1123578888887732 122


Q ss_pred             cccchhhhhhhcccceeeeccccCcccccccCcc-CCCCccccEEeecccc
Q 009194          273 LQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-GEGFPRLKRLLVTDCS  322 (540)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~  322 (540)
                      +  +..   ....|+.|++.+.. +..+...++. ...++.+..+.+.+.+
T Consensus       382 L--P~~---l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        382 L--PEN---LPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             C--CHh---HHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence            2  222   22456666666533 2232222111 2334667777777664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=6.5e-12  Score=133.00  Aligned_cols=234  Identities=15%  Similarity=0.179  Sum_probs=168.7

Q ss_pred             hhhhhhhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccc
Q 009194           26 DLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG  105 (540)
Q Consensus        26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~  105 (540)
                      .++.+|. .+++.++.|++++|.+..+|... ..+|++|++++|.+  ..+|..+   ..+|+.|++++|.+..+|..+.
T Consensus       189 ~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~  261 (754)
T PRK15370        189 GLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITELPERLP  261 (754)
T ss_pred             CcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCcCChhHh
Confidence            4555554 46788999999999999888754 36899999999986  5677654   3579999999999999987664


Q ss_pred             cCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEE
Q 009194          106 RLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY  184 (540)
Q Consensus       106 ~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  184 (540)
                        .+|++|++++|.++. |..+.  .+|++|++++|.++.+|..+.  .+|++|++++|. +..+|.. +  .++|+.|+
T Consensus       262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~  331 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLE  331 (754)
T ss_pred             --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceecc
Confidence              589999999999887 66554  589999999999998887553  478999999987 6667754 2  36899999


Q ss_pred             ccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEE
Q 009194          185 MGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMML  264 (540)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  264 (540)
                      +++|.+..         .+..+  .++|+.|++++|.+..+|..+ .++|+.|+++.+....+..    .....|+.|++
T Consensus       332 Ls~N~Lt~---------LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~----~l~~sL~~LdL  395 (754)
T PRK15370        332 AGENALTS---------LPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPE----NLPAALQIMQA  395 (754)
T ss_pred             ccCCcccc---------CChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCH----hHHHHHHHHhh
Confidence            99887651         22222  268999999999988777643 3689999987766554421    12246888888


Q ss_pred             eccccccccccchhhhhh---hcccceeeecccc
Q 009194          265 KGIKKVSILQENDGTKML---LQRTEDLWLETLE  295 (540)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~  295 (540)
                      +++. ...+  +..+...   .+++..+.+.+.+
T Consensus       396 s~N~-L~~L--P~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        396 SRNN-LVRL--PESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ccCC-cccC--chhHHHHhhcCCCccEEEeeCCC
Confidence            8732 1222  2222222   3556667665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.32  E-value=4.5e-14  Score=132.24  Aligned_cols=170  Identities=14%  Similarity=0.196  Sum_probs=106.6

Q ss_pred             CCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccCh
Q 009194          308 EGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSF  387 (540)
Q Consensus       308 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  387 (540)
                      ..+..|+.|..++|..++..+..   .-....++|+.+.+..|..+++.....+  ..+++.|+.+.+.+|..+++....
T Consensus       291 ~~c~~lq~l~~s~~t~~~d~~l~---aLg~~~~~L~~l~l~~c~~fsd~~ft~l--~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDITDEVLW---ALGQHCHNLQVLELSGCQQFSDRGFTML--GRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             hhhhHhhhhcccCCCCCchHHHH---HHhcCCCceEEEeccccchhhhhhhhhh--hcCChhhhhhcccccceehhhhHh
Confidence            44667777777777654433221   1334557777777777777777665554  456777777777777766665344


Q ss_pred             HHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhc
Q 009194          388 SMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSL  467 (540)
Q Consensus       388 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l  467 (540)
                      ....+++.|+.+.++.|..+++.+...+                   .....+...|+.+.+.+||.+++- ..+....+
T Consensus       366 sls~~C~~lr~lslshce~itD~gi~~l-------------------~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c  425 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEGIRHL-------------------SSSSCSLEGLEVLELDNCPLITDA-TLEHLSIC  425 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhhhhhh-------------------hhccccccccceeeecCCCCchHH-HHHHHhhC
Confidence            4456677788888887777776521110                   111223567778888888888776 34556777


Q ss_pred             CCCcEEEEecccccceeccccccCCCCccccccccceeecc
Q 009194          468 GQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLH  508 (540)
Q Consensus       468 ~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~  508 (540)
                      ++||.+++.+|...+.-..+..      ..++|.+++..+.
T Consensus       426 ~~Leri~l~~~q~vtk~~i~~~------~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  426 RNLERIELIDCQDVTKEAISRF------ATHLPNIKVHAYF  460 (483)
T ss_pred             cccceeeeechhhhhhhhhHHH------HhhCccceehhhc
Confidence            8888888888877666433221      2256666665544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.31  E-value=4.5e-14  Score=132.26  Aligned_cols=267  Identities=17%  Similarity=0.117  Sum_probs=153.7

Q ss_pred             ccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecccc
Q 009194          253 LVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR  332 (540)
Q Consensus       253 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  332 (540)
                      ...+|++++|.+.+|...+... .......+++|+++.+..|..+++...+.. ..++++|+++.+++|+.++.-.   .
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s-~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l-a~gC~kL~~lNlSwc~qi~~~g---v  234 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSS-LLSLARYCRKLRHLNLHSCSSITDVSLKYL-AEGCRKLKYLNLSWCPQISGNG---V  234 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHH-HHHHHHhcchhhhhhhcccchhHHHHHHHH-HHhhhhHHHhhhccCchhhcCc---c
Confidence            3466777777777755444333 344455668888888888777776644322 5678888888888888666411   1


Q ss_pred             ccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccc
Q 009194          333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG  412 (540)
Q Consensus       333 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  412 (540)
                      .....++..++.+..++|..++.-.....  ...++-+.++++..|..+++.........+..|+.|+.++|.++++...
T Consensus       235 ~~~~rG~~~l~~~~~kGC~e~~le~l~~~--~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l  312 (483)
T KOG4341|consen  235 QALQRGCKELEKLSLKGCLELELEALLKA--AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL  312 (483)
T ss_pred             hHHhccchhhhhhhhcccccccHHHHHHH--hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH
Confidence            11233445566666666665544332221  3344555555555666666554333444555666666666665554443


Q ss_pred             cCCC-CCCCccceeeecccCCC----CCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccc
Q 009194          413 PDME-KPPTTQGFIEINAEDDP----VHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNT  487 (540)
Q Consensus       413 ~~~~-~~~~l~~l~~i~~~~~~----~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~  487 (540)
                      ...+ ..+.|+.+ .+..|...    ......+.+.|+.+++.+|..+.+-.......+++.|+.+.+++|..+++-   
T Consensus       313 ~aLg~~~~~L~~l-~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~---  388 (483)
T KOG4341|consen  313 WALGQHCHNLQVL-ELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE---  388 (483)
T ss_pred             HHHhcCCCceEEE-eccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh---
Confidence            2222 11223322 33333322    122233677888888888877666533444567888888888888776663   


Q ss_pred             cccCC-CCccccccccceeecccCCCCC--------CCCCCCceEeecCCCcc
Q 009194          488 TTLGG-RDEFKVFPKLHYLSLHWLPKLS--------SFASPEDVIHTEMQPQS  531 (540)
Q Consensus       488 ~~~~~-~~~~~~~~~L~~L~l~~~p~L~--------~~~~l~~l~i~~c~~~~  531 (540)
                       +..+ .........|+.+.+.+||.++        ..+.|+.+.+.+|+.++
T Consensus       389 -gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  389 -GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             -hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence             2221 1112345668888888888744        44778888888887643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.21  E-value=1.5e-12  Score=121.18  Aligned_cols=241  Identities=17%  Similarity=0.151  Sum_probs=149.5

Q ss_pred             ecCcchhhhhhhhhhcCCCeEEEccCCCCCCCCCcC--CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCC-CCC
Q 009194           21 VPNVADLEKKMEETIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGS   97 (540)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~   97 (540)
                      -..+.++.++|. +.++....+.+..|.+..+|+-.  .+++||.|+++.|.+  ..+..+.|.+++.|..|-+.+ |.|
T Consensus        52 dCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   52 DCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             EccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCch
Confidence            344566667664 67888889999988888888733  888899999998886  666667778888888887777 778


Q ss_pred             CCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCcccc------
Q 009194           98 SSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLE------  167 (540)
Q Consensus        98 ~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~------  167 (540)
                      +.+|. .|+++..|+-|.+.-|.+.-  .+.+..+++|..|.+..|.+..++. .+..+.+++++.+..+.++.      
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w  208 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW  208 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence            88875 56788888888888777664  4778888888888888888877776 37777777777765543110      


Q ss_pred             ------ccchhhhhcCCccceEEccCCCccccccc--------------C----CCccchhhccCCCCccEEEeecCCCC
Q 009194          168 ------VIAPNVISKLSQLEELYMGNGFSGWEKVE--------------G----GSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       168 ------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--------------~----~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                            ..|.+ .+..+...-..+.+..+......              .    ...+-...++++++|++|++++|.+.
T Consensus       209 la~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  209 LADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             hhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence                  11111 11111111111111111000000              0    01112233677888888888888777


Q ss_pred             CCCccccc--cCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          224 ILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       224 ~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      .+......  .+++.|.+..+.+... .......+..|+.|++.+
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~  331 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYD  331 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcchHHHH-HHHhhhccccceeeeecC
Confidence            66655333  6667666644332221 111234566777777766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.16  E-value=8.8e-13  Score=122.76  Aligned_cols=103  Identities=24%  Similarity=0.236  Sum_probs=55.4

Q ss_pred             CcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecC-CCCcccchh-cCCCCCCCEEECC
Q 009194           87 LKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAY-SNINQLPVE-IGQLTRLQLLDLS  161 (540)
Q Consensus        87 L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~-~~~~~lp~~-~~~l~~L~~L~l~  161 (540)
                      -..+.+..|+|+.+|+ +|+.+++||.|++++|.|+.  |..|..++.|-.|-+.+ |+|+.+|.. ++++..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            3345555555555543 44555555555555555554  45555555555444444 455555554 5555555555555


Q ss_pred             CCccccccchhhhhcCCccceEEccCCCc
Q 009194          162 NCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (540)
                      -|. +..++.+++..+++|..|.+..|.+
T Consensus       149 an~-i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  149 ANH-INCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             hhh-hcchhHHHHHHhhhcchhcccchhh
Confidence            554 4555555555555555555554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.14  E-value=1.5e-11  Score=120.33  Aligned_cols=160  Identities=21%  Similarity=0.139  Sum_probs=72.2

Q ss_pred             CCCCccEEEcccCCCCCccc---cHHHHhcCccCcEEEcCCCCCCC-------CCcccccCCCCcEEEcCCCccCC--cc
Q 009194           57 QCPNLQLFLLYTEGNGPMQV---SDHFFEGMEGLKVLQFPGIGSSS-------LPSSLGRLINLQTLCLDWCELAD--IA  124 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~-------l~~~l~~l~~L~~L~l~~~~~~~--~~  124 (540)
                      .++.|+.+.+.++.. ...-   ....+...+.++.++++++.+..       ++..+..+++|++|++++|.+..  +.
T Consensus        21 ~l~~L~~l~l~~~~l-~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          21 KLLCLQVLRLEGNTL-GEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHhhccEEeecCCCC-cHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            344466666666554 1111   11222345556666666555431       22334445566666666665542  23


Q ss_pred             cccCCC---CCCEEEecCCCCc-----ccchhcCCC-CCCCEEECCCCcccc----ccchhhhhcCCccceEEccCCCcc
Q 009194          125 AIGQLK---KLEILSLAYSNIN-----QLPVEIGQL-TRLQLLDLSNCWWLE----VIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       125 ~i~~l~---~L~~L~l~~~~~~-----~lp~~~~~l-~~L~~L~l~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      .+..+.   +|++|++++|.+.     .+...+..+ ++|+.|++++|....    .++.. +..+++|++|++++|.+.
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCc
Confidence            333332   2666666665444     122233444 556666666555221    11111 334455556665555443


Q ss_pred             cccccCCCccchhhccCCCCccEEEeecCCC
Q 009194          192 WEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (540)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (540)
                      ..    ........+..+++|+.|++++|.+
T Consensus       179 ~~----~~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         179 DA----GIRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             hH----HHHHHHHHHHhCCCCCEEeccCCcc
Confidence            10    0011222333444555555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=3.2e-12  Score=124.41  Aligned_cols=192  Identities=23%  Similarity=0.309  Sum_probs=160.8

Q ss_pred             cchhhhhhhhh---hcCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC
Q 009194           24 VADLEKKMEET---IQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS   99 (540)
Q Consensus        24 ~~~~~~~~~~~---~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   99 (540)
                      +...+.+|...   .......++++.|.+..+|.-. .+..|..+.+..|.+  ..++..+ .++..|.+++++.|+++.
T Consensus        59 ~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i-~~L~~lt~l~ls~NqlS~  135 (722)
T KOG0532|consen   59 GRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAI-CNLEALTFLDLSSNQLSH  135 (722)
T ss_pred             cchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhh-hhhhHHHHhhhccchhhc
Confidence            33444444432   2344567888889988888755 778899999999886  6677666 789999999999999999


Q ss_pred             CCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCC
Q 009194          100 LPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS  178 (540)
Q Consensus       100 l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  178 (540)
                      +|..+..|+ |+.|-+++|+++. |..++.+.+|..|+.+.|.+.++|..++.+.+|+.|.+..|. ...+|.+ +..|+
T Consensus       136 lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~Lp  212 (722)
T KOG0532|consen  136 LPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSLP  212 (722)
T ss_pred             CChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCCc
Confidence            998888887 9999999999887 889999999999999999999999999999999999999988 7888888 66554


Q ss_pred             ccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc
Q 009194          179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS  231 (540)
Q Consensus       179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  231 (540)
                       |..|+++.|.+.         ..+..+.+|..|++|.+.+|++..-|..+..
T Consensus       213 -Li~lDfScNkis---------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  213 -LIRLDFSCNKIS---------YLPVDFRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             -eeeeecccCcee---------ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence             899999999887         6678899999999999999999888877655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=9.5e-11  Score=101.18  Aligned_cols=102  Identities=24%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             CCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCccc-ccCCCCcEEEc
Q 009194           38 DPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCL  115 (540)
Q Consensus        38 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l-~~l~~L~~L~l  115 (540)
                      +.|.|+++++.+..+.... .+.+|+.|++++|.+  .++..  +..+++|++|++++|.++.+...+ ..+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            3455555555554444433 344555555555554  22222  244555555555555555444333 23555555555


Q ss_pred             CCCccCC---cccccCCCCCCEEEecCCCCc
Q 009194          116 DWCELAD---IAAIGQLKKLEILSLAYSNIN  143 (540)
Q Consensus       116 ~~~~~~~---~~~i~~l~~L~~L~l~~~~~~  143 (540)
                      ++|.+.+   ...+..+++|++|++.+|.+.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            5555443   234444455555555555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.9e-10  Score=99.33  Aligned_cols=126  Identities=25%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             ccCcEEEcCCCCCCCCCcccc-cCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchhc-CCCCCCCEEECCC
Q 009194           85 EGLKVLQFPGIGSSSLPSSLG-RLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSN  162 (540)
Q Consensus        85 ~~L~~L~l~~~~~~~l~~~l~-~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~-~~l~~L~~L~l~~  162 (540)
                      ..++.|+++++.++.+.. ++ .+.+|+.|++++|.++..+.+..+++|+.|++++|.++.++..+ ..+++|++|++++
T Consensus        19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~   97 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN   97 (175)
T ss_dssp             -----------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred             cccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence            344444444444443321 22 34445555555555544444445555555555555555443333 2345555555555


Q ss_pred             Cccccccch-hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEe
Q 009194          163 CWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI  217 (540)
Q Consensus       163 ~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  217 (540)
                      |. +.++.. ..++.+++|+.|++.+|++..     ........+..+|+|+.||-
T Consensus        98 N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~-----~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   98 NK-ISDLNELEPLSSLPKLRVLSLEGNPVCE-----KKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             S----SCCCCGGGGG-TT--EEE-TT-GGGG-----STTHHHHHHHH-TT-SEETT
T ss_pred             Cc-CCChHHhHHHHcCCCcceeeccCCcccc-----hhhHHHHHHHHcChhheeCC
Confidence            44 222110 113445555555555554431     11123333444555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=4.6e-11  Score=116.54  Aligned_cols=189  Identities=21%  Similarity=0.263  Sum_probs=160.8

Q ss_pred             EEEccCCCCCCCCCc---CCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCC
Q 009194           41 AISLPHRDIQELPER---LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW  117 (540)
Q Consensus        41 ~l~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~  117 (540)
                      ++.|++...+.+|.-   ..+......+++.|.+  ..+|..+ ..|..|..+.++.|.+..+|..+.++..|.+++++.
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~--~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF--SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhcccccc--ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence            556666555555542   2445555678888887  7788776 788999999999999999999999999999999999


Q ss_pred             CccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccccc
Q 009194          118 CELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE  196 (540)
Q Consensus       118 ~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (540)
                      |.++. |..++.|+ |++|.+++|+++.+|..++.+..|.+||.+.|. +..+|.+ ++.+.+|+.|.+..|.+.     
T Consensus       131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~-----  202 (722)
T KOG0532|consen  131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE-----  202 (722)
T ss_pred             chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-----
Confidence            99998 88888887 999999999999999999999999999999998 8889888 899999999999888776     


Q ss_pred             CCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCC
Q 009194          197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGP  245 (540)
Q Consensus       197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~  245 (540)
                          ..++++..+ .|..||++.|++..+|..+.. ..|+.|.+..+...
T Consensus       203 ----~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  203 ----DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ----hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence                567778755 589999999999999999877 88999988766543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.97  E-value=7.3e-10  Score=108.38  Aligned_cols=205  Identities=21%  Similarity=0.190  Sum_probs=134.9

Q ss_pred             cCCCeEEEccCCCCCCCC-------C-cCCCCCccEEEcccCCCCCccccHHHHhcCcc---CcEEEcCCCCCCC-----
Q 009194           36 QKDPIAISLPHRDIQELP-------E-RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEG---LKVLQFPGIGSSS-----   99 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~-------~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~-----   99 (540)
                      .+++++++++++.+...+       . +..+++|+.|++++|.+ .... ...+..+..   |++|++++|.+..     
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~  127 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL-GPDG-CGVLESLLRSSSLQELKLNNNGLGDRGLRL  127 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC-ChhH-HHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence            455889999887765211       1 22678999999999887 3222 223344444   9999999998762     


Q ss_pred             CCcccccC-CCCcEEEcCCCccCC------cccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCcccc
Q 009194          100 LPSSLGRL-INLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLE  167 (540)
Q Consensus       100 l~~~l~~l-~~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~  167 (540)
                      +...+..+ ++|+.|++++|.++.      +..+..+.+|++|++++|.+.     .++..+..+++|++|++++|....
T Consensus       128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence            33455666 889999999999773      245667789999999999776     344456667899999999887321


Q ss_pred             ----ccchhhhhcCCccceEEccCCCcccccccCCCccchhhc-cCCCCccEEEeecCCCCCC-----Cccccc-cCccE
Q 009194          168 ----VIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTLEIEVPDAEIL-----PPDFVS-VELQR  236 (540)
Q Consensus       168 ----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~-----~~~~~~-~~L~~  236 (540)
                          .++.. +..+++|++|++++|.+.....    ......+ ...+.|+.|++++|.+...     ...... ++|+.
T Consensus       208 ~~~~~l~~~-~~~~~~L~~L~ls~n~l~~~~~----~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~  282 (319)
T cd00116         208 EGASALAET-LASLKSLEVLNLGDNNLTDAGA----AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE  282 (319)
T ss_pred             HHHHHHHHH-hcccCCCCEEecCCCcCchHHH----HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccE
Confidence                12222 5677889999999987652110    0111111 1247899999999886421     122222 67888


Q ss_pred             EEEEecCCCCC
Q 009194          237 YKIRIGDGPED  247 (540)
Q Consensus       237 L~l~~~~~~~~  247 (540)
                      +.++.+.+.+.
T Consensus       283 l~l~~N~l~~~  293 (319)
T cd00116         283 LDLRGNKFGEE  293 (319)
T ss_pred             EECCCCCCcHH
Confidence            88876665544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=2.8e-10  Score=107.81  Aligned_cols=187  Identities=21%  Similarity=0.127  Sum_probs=112.2

Q ss_pred             hhcCCCeEEEccCCCCCCCCC---cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCccc--ccCC
Q 009194           34 TIQKDPIAISLPHRDIQELPE---RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL--GRLI  108 (540)
Q Consensus        34 ~~~~~l~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l--~~l~  108 (540)
                      .-.+++|.+++.++.++..+.   ...|+++|.|+++.|-+........+...+++|+.|+++.|.+....++.  ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            346678888888777765552   23788888888888776444445566677888888888887764322211  2567


Q ss_pred             CCcEEEcCCCccCC--c-ccccCCCCCCEEEecCCC-CcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEE
Q 009194          109 NLQTLCLDWCELAD--I-AAIGQLKKLEILSLAYSN-INQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY  184 (540)
Q Consensus       109 ~L~~L~l~~~~~~~--~-~~i~~l~~L~~L~l~~~~-~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  184 (540)
                      +|+.|.++.|.++.  . .....+++|+.|++.+|. +..-......+..|+.|++++|..++.--...++.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            77888888887763  3 455567778888887773 3222222344667777777777644332122266777777777


Q ss_pred             ccCCCcccccccCCCccchhhccCCCCccEEEeecCCC
Q 009194          185 MGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (540)
Q Consensus       185 l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (540)
                      ++.+.+....  ..+..+.......++|+.|++..|++
T Consensus       278 ls~tgi~si~--~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  278 LSSTGIASIA--EPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccccCcchhc--CCCccchhhhcccccceeeecccCcc
Confidence            7766554110  11112222234455555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=4.2e-10  Score=101.43  Aligned_cols=185  Identities=14%  Similarity=0.109  Sum_probs=137.4

Q ss_pred             hhcCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCc--cccH-------------------HHHhcCccCcEEE
Q 009194           34 TIQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPM--QVSD-------------------HFFEGMEGLKVLQ   91 (540)
Q Consensus        34 ~~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~--~~~~-------------------~~~~~l~~L~~L~   91 (540)
                      ++.+++..+.++.++-+.+.... .-|.|.++.+........  -+|.                   .....+..|..++
T Consensus       211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD  290 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD  290 (490)
T ss_pred             HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence            45666777777776655554443 345666666554332000  0000                   0113457899999


Q ss_pred             cCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccch
Q 009194           92 FPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP  171 (540)
Q Consensus        92 l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~  171 (540)
                      +++|.|+.+.++..-.|.+|.|++++|.+.....+..+++|+.||+++|.++++...-.++.+.+.|.+.+|. +..+..
T Consensus       291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSG  369 (490)
T KOG1259|consen  291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK-IETLSG  369 (490)
T ss_pred             ccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh-Hhhhhh
Confidence            9999999998888889999999999999888777899999999999999888876666788999999999987 777765


Q ss_pred             hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcc
Q 009194          172 NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD  228 (540)
Q Consensus       172 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  228 (540)
                        ++++-+|..|++++|.+...       .-...+++++-|+.+.+.+|++..++..
T Consensus       370 --L~KLYSLvnLDl~~N~Ie~l-------deV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  370 --LRKLYSLVNLDLSSNQIEEL-------DEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             --hHhhhhheeccccccchhhH-------HHhcccccccHHHHHhhcCCCccccchH
Confidence              88999999999999887622       2245678899999999999987766643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=6.9e-10  Score=100.03  Aligned_cols=125  Identities=22%  Similarity=0.267  Sum_probs=73.2

Q ss_pred             cCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ++.+..+++++|.+..+.++. -.|++|.|+++.|.+  ..+- . +..+++|..|++++|.++.+..+=.++.|+++|.
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--~~v~-n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--RTVQ-N-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccce--eeeh-h-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            455666666666666665555 346666666666654  2221 2 3556666666666666655544445566666666


Q ss_pred             cCCCccCCcccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCc
Q 009194          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCW  164 (540)
Q Consensus       115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~  164 (540)
                      +.+|.+.....++++++|.+||+++|++..+..  +|++++.|+++.+.+|.
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            666666656666666666666666666654332  35666666666655554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.9e-09  Score=102.30  Aligned_cols=177  Identities=14%  Similarity=0.066  Sum_probs=107.2

Q ss_pred             hcCccCcEEEcCCCCCCCCC--cccccCCCCcEEEcCCCccCC--c--ccccCCCCCCEEEecCCCCcccchh--cCCCC
Q 009194           82 EGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD--I--AAIGQLKKLEILSLAYSNINQLPVE--IGQLT  153 (540)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~--~--~~i~~l~~L~~L~l~~~~~~~lp~~--~~~l~  153 (540)
                      ++++.|+...++++.+...+  .....|++++.|++++|-+..  +  .....|++|+.|+++.|.+...-.+  -..+.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            56777888888888776555  345678888888888887664  2  5566788888888888766532222  23567


Q ss_pred             CCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcc--ccc
Q 009194          154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD--FVS  231 (540)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~  231 (540)
                      +|+.|.+++|.....-...++..+|+|+.|.+..|....        .......-++.|+.|+|++|.+-.++..  .+.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--------eecchhhhhhHHhhccccCCccccccccccccc
Confidence            788888888875444334445667888888887773210        0111223355677888888775544422  122


Q ss_pred             -cCccEEEEEecCCCCCCCCc-----cccccccccEEEEec
Q 009194          232 -VELQRYKIRIGDGPEDEFDP-----LLVKSEASRLMMLKG  266 (540)
Q Consensus       232 -~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~  266 (540)
                       +.|+.|+++.+++++....+     ....+++|+.|.+..
T Consensus       270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             ccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence             66777777666554442221     133445555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.76  E-value=9.4e-09  Score=103.64  Aligned_cols=186  Identities=26%  Similarity=0.322  Sum_probs=128.3

Q ss_pred             EEccCCCC-CCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCc-cCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCc
Q 009194           42 ISLPHRDI-QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGME-GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE  119 (540)
Q Consensus        42 l~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~  119 (540)
                      +....+.+ ...........++.|.+.++.+  .+++... .... +|+.|+++++.+..+|..++.+++|+.|+++.|.
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i--~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNI--TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCccc--ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence            44555544 3333333556788888888775  5555543 3443 7888888888888887777888888888888888


Q ss_pred             cCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCC
Q 009194          120 LAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG  198 (540)
Q Consensus       120 ~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  198 (540)
                      +.+ +...+.+++|+.|+++++.+..+|..+....+|+++.++++... ..+.. +.++.++..+.+..+...       
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~-------  245 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLE-------  245 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceee-------
Confidence            877 55555888888888888888888877777777888888887523 33333 677777777776666554       


Q ss_pred             CccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEec
Q 009194          199 SNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG  242 (540)
Q Consensus       199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~  242 (540)
                        ..+..++.+++++.|+++.|....++. +.. .+++.+.++..
T Consensus       246 --~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         246 --DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             --eccchhccccccceecccccccccccc-ccccCccCEEeccCc
Confidence              224556677778888888888777766 333 77777777543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=4.6e-10  Score=101.12  Aligned_cols=180  Identities=19%  Similarity=0.111  Sum_probs=110.5

Q ss_pred             cccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHh
Q 009194          312 RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK  391 (540)
Q Consensus       312 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  391 (540)
                      .|++++++... ++   ..........+.+|+.|++.+. ++.+--...   ...=.+|+.|+++.|..++......++.
T Consensus       186 Rlq~lDLS~s~-it---~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n~~~ll~~  257 (419)
T KOG2120|consen  186 RLQHLDLSNSV-IT---VSTLHGILSQCSKLKNLSLEGL-RLDDPIVNT---IAKNSNLVRLNLSMCSGFTENALQLLLS  257 (419)
T ss_pred             hhHHhhcchhh-ee---HHHHHHHHHHHHhhhhcccccc-ccCcHHHHH---HhccccceeeccccccccchhHHHHHHH
Confidence            46666666542 21   1111124556777777777763 333321111   2223678888888888888776666778


Q ss_pred             hcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCcc-CCCCccEEEEccCCCccccc-chhhhhhcCC
Q 009194          392 NLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIY-CCQNLTKVTVWSCHRLKYLF-SYSMVNSLGQ  469 (540)
Q Consensus       392 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~-~~~~L~~L~l~~C~~l~~l~-~~~~~~~l~~  469 (540)
                      +++.|.+|.+++|.-.++..-                       ..+. --++|+.|+++||.+--... .......+|+
T Consensus       258 scs~L~~LNlsWc~l~~~~Vt-----------------------v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~  314 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVT-----------------------VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN  314 (419)
T ss_pred             hhhhHhhcCchHhhccchhhh-----------------------HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence            888888888888877665420                       1111 13677777777776532211 1233467788


Q ss_pred             CcEEEEecccccceeccccccCCCCccccccccceeecccCCC--------CCCCCCCCceEeecCCC
Q 009194          470 LQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK--------LSSFASPEDVIHTEMQP  529 (540)
Q Consensus       470 L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~--------L~~~~~l~~l~i~~c~~  529 (540)
                      |-+||+++|..++.-+..+       +..|+.|++|+++.|-.        +++.|+|.+|++-+|=+
T Consensus       315 l~~LDLSD~v~l~~~~~~~-------~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQE-------FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             eeeeccccccccCchHHHH-------HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            8888888887766633222       44677888888877765        55678888888877744

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.72  E-value=1.3e-08  Score=102.69  Aligned_cols=187  Identities=24%  Similarity=0.277  Sum_probs=149.8

Q ss_pred             EEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCC-CCcEEEcCCCccCC-cccccCCCCCCEEEecCC
Q 009194           63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI-NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS  140 (540)
Q Consensus        63 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~-~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~  140 (540)
                      .+....+..  ......+ ..+..+..|++.++.+..++....... +|++|+++++.+.. +..+..+++|+.|+++.|
T Consensus        97 ~l~~~~~~~--~~~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRL--RSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccc--ccCchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence            466666654  2223333 466889999999999999998887885 99999999999998 589999999999999999


Q ss_pred             CCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecC
Q 009194          141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP  220 (540)
Q Consensus       141 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  220 (540)
                      ++..+|...+..++|+.|+++++. +..+|.. +.....|+++.++++...         ..+..+.++.++..+.+..+
T Consensus       174 ~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~---------~~~~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         174 DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSII---------ELLSSLSNLKNLSGLELSNN  242 (394)
T ss_pred             hhhhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCcce---------ecchhhhhcccccccccCCc
Confidence            999999888899999999999988 8888885 467777999999988432         34566778888888888888


Q ss_pred             CCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          221 DAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       221 ~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      ....++..+.. .+++.|.+....+.++..   .....+++.|++++
T Consensus       243 ~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~  286 (394)
T COG4886         243 KLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSG  286 (394)
T ss_pred             eeeeccchhccccccceecccccccccccc---ccccCccCEEeccC
Confidence            87766555555 679999887776666533   56778899999887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.46  E-value=4.8e-08  Score=90.41  Aligned_cols=161  Identities=21%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             CCCCccEEEcccCCCCCccc--cHHHHhcCccCcEEEcCCCCCCCC--------------CcccccCCCCcEEEcCCCcc
Q 009194           57 QCPNLQLFLLYTEGNGPMQV--SDHFFEGMEGLKVLQFPGIGSSSL--------------PSSLGRLINLQTLCLDWCEL  120 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~l--------------~~~l~~l~~L~~L~l~~~~~  120 (540)
                      .+++|+++++++|.+++..+  ..++++.+..|+.|.+.+|.+...              ......-++||++...+|++
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            55566666666665533222  133344555666666666654320              11122334566666655554


Q ss_pred             CC-c-----ccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCccccccchh---hhhcCCccceEEcc
Q 009194          121 AD-I-----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAPN---VISKLSQLEELYMG  186 (540)
Q Consensus       121 ~~-~-----~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~  186 (540)
                      .+ +     ..+...+.|+.+.+..|.+.     .+-..+..+++|+.||+..|.+...-...   .+..+++|++++++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            43 1     33444455566655555443     22233455666666666555422211111   13345556666666


Q ss_pred             CCCcccccccCCCccchhhc-cCCCCccEEEeecCC
Q 009194          187 NGFSGWEKVEGGSNASLVEL-ERLTELTTLEIEVPD  221 (540)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~  221 (540)
                      +|.+.    ..+..+....+ ...++|+.|.+.+|.
T Consensus       250 dcll~----~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  250 DCLLE----NEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             ccccc----cccHHHHHHHHhccCCCCceeccCcch
Confidence            55544    11222222223 224556666665555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=7.9e-09  Score=93.30  Aligned_cols=66  Identities=23%  Similarity=0.135  Sum_probs=44.0

Q ss_pred             CCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194          307 GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR  379 (540)
Q Consensus       307 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  379 (540)
                      ...+|+|.+|++++|-.++.-    .+.....|+.|++|+++.|..+-   .+.+-++...|+|.+|++.+|-
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~----~~~~~~kf~~L~~lSlsRCY~i~---p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKND----CFQEFFKFNYLQHLSLSRCYDII---PETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHhCCceeeeccccccccCch----HHHHHHhcchheeeehhhhcCCC---hHHeeeeccCcceEEEEecccc
Confidence            345778888888877655531    22255677888888888877542   2222227778999999998874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=3.3e-09  Score=106.61  Aligned_cols=130  Identities=25%  Similarity=0.268  Sum_probs=103.9

Q ss_pred             cCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCc
Q 009194           86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW  164 (540)
Q Consensus        86 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~  164 (540)
                      .|.+.++++|.+..+..++.-++.|+.|++++|++++...+.+|++|++||+++|.+..+|.- ...+. |+.|.+++|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~  243 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA  243 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence            466667777777767778888999999999999999877999999999999999999988864 23344 9999999987


Q ss_pred             cccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194          165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP  226 (540)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  226 (540)
                       +..+-.  +.++.+|+.|++++|.+..       ..-+.-+..+..|+.|++.+|++..-|
T Consensus       244 -l~tL~g--ie~LksL~~LDlsyNll~~-------hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  244 -LTTLRG--IENLKSLYGLDLSYNLLSE-------HSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             -HHhhhh--HHhhhhhhccchhHhhhhc-------chhhhHHHHHHHHHHHhhcCCccccCH
Confidence             666655  8899999999999987651       123455667788999999998755443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.34  E-value=4.1e-07  Score=64.33  Aligned_cols=55  Identities=29%  Similarity=0.375  Sum_probs=25.3

Q ss_pred             cCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCC
Q 009194           86 GLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYS  140 (540)
Q Consensus        86 ~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~  140 (540)
                      +|++|++++|.+..+| ..+.++++|++|++++|.++.  +..+.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            3444444444444443 233444444444444444443  234444444444444444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.32  E-value=3e-07  Score=97.04  Aligned_cols=103  Identities=19%  Similarity=0.269  Sum_probs=44.4

Q ss_pred             CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCC--CCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEe
Q 009194           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSL  137 (540)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l  137 (540)
                      +|++|+++|.......++..+...+|.|+.|.+.+-.+.  ++-.-..++++|+.||+++++++....+++|++|++|.+
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m  202 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM  202 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence            444444444443334444444344444444444443332  122222344445555555544444444444555554444


Q ss_pred             cCCCCcccc--hhcCCCCCCCEEECCC
Q 009194          138 AYSNINQLP--VEIGQLTRLQLLDLSN  162 (540)
Q Consensus       138 ~~~~~~~lp--~~~~~l~~L~~L~l~~  162 (540)
                      .+-.+..-.  ..+.+|++|++||++.
T Consensus       203 rnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  203 RNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             cCCCCCchhhHHHHhcccCCCeeeccc
Confidence            443333111  1234444555555444

>PLN03150 hypothetical protein; Provisional

Probab=98.31  E-value=1.8e-06  Score=91.46  Aligned_cols=104  Identities=22%  Similarity=0.279  Sum_probs=77.2

Q ss_pred             CCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCc-ccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEc
Q 009194          109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (540)
Q Consensus       109 ~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (540)
                      .++.|+++++.+..  |..++++++|+.|++++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            37778888888765  678888888888888888776 77878888888888888888866677766 788888888888


Q ss_pred             cCCCcccccccCCCccchhhccC-CCCccEEEeecCC
Q 009194          186 GNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPD  221 (540)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  221 (540)
                      ++|.+..        ..+..++. ..++..+++.+|.
T Consensus       498 s~N~l~g--------~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        498 NGNSLSG--------RVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCcccc--------cCChHHhhccccCceEEecCCc
Confidence            8877651        22333433 2456677777775

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.30  E-value=7e-07  Score=63.15  Aligned_cols=55  Identities=35%  Similarity=0.531  Sum_probs=27.6

Q ss_pred             CCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCC
Q 009194          109 NLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNC  163 (540)
Q Consensus       109 ~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~  163 (540)
                      +|++|++++|.++. + ..+.++++|++|++++|.++.++.. +..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            45555555555544 2 4445555555555555555544432 455555555555544

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.29  E-value=8e-08  Score=99.80  Aligned_cols=123  Identities=18%  Similarity=0.143  Sum_probs=68.9

Q ss_pred             hcccceeeeccccCcccccccCccCCCCccccEEeeccc-cCceeeeccccccccccCcccceecccccccccccccccC
Q 009194          283 LQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC-SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQL  361 (540)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  361 (540)
                      .+.|+.+.+..+..+.+... ......+++|+.|++.+| ........ ........+++|+.|++..|..+++.....+
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSL-DALALKCPNLEELDLSGCCLLITLSPL-LLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             CchhhHhhhcccccCChhhH-HHHHhhCchhheecccCcccccccchh-HhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            35566666665555544211 011345667777777662 22222211 1111334456777777777666666554443


Q ss_pred             CCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccccccc
Q 009194          362 REDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM  409 (540)
Q Consensus       362 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  409 (540)
                        ...+++|++|.+.+|..+++.........+++|++|++++|..+++
T Consensus       265 --~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d  310 (482)
T KOG1947|consen  265 --ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD  310 (482)
T ss_pred             --HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence              2336777777777777666665555566677777777777777644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.23  E-value=6.5e-07  Score=94.50  Aligned_cols=136  Identities=20%  Similarity=0.186  Sum_probs=92.0

Q ss_pred             CccCcEEEcCCCCC--CCCCccc-ccCCCCcEEEcCCCccCC---cccccCCCCCCEEEecCCCCcccchhcCCCCCCCE
Q 009194           84 MEGLKVLQFPGIGS--SSLPSSL-GRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL  157 (540)
Q Consensus        84 l~~L~~L~l~~~~~--~~l~~~l-~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~  157 (540)
                      -.+|++|++++...  ...|..+ ..+|.|+.|.+.+-.+..   -....++++|..||+++++++.+ .+++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            36889999988653  2344444 368999999998877543   25666889999999999988888 78999999999


Q ss_pred             EECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCC
Q 009194          158 LDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (540)
Q Consensus       158 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (540)
                      |.+.+-......--..+-+|++|++||++.........  -..-..+.-..+|+||.||.+++..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~--ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK--IIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH--HHHHHHHhcccCccccEEecCCcch
Confidence            98877542221111226788999999988654431110  0001122234588999999997763

>PLN03150 hypothetical protein; Provisional

Probab=98.23  E-value=3.9e-06  Score=88.91  Aligned_cols=104  Identities=22%  Similarity=0.389  Sum_probs=89.4

Q ss_pred             cCcEEEcCCCCCC-CCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCc-ccchhcCCCCCCCEEECC
Q 009194           86 GLKVLQFPGIGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLS  161 (540)
Q Consensus        86 ~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~  161 (540)
                      .++.|+++++.+. .+|..+..+++|++|++++|.+..  |..++.+++|+.|++++|.+. .+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999886 588889999999999999999875  678999999999999999887 788889999999999999


Q ss_pred             CCccccccchhhhhc-CCccceEEccCCCc
Q 009194          162 NCWWLEVIAPNVISK-LSQLEELYMGNGFS  190 (540)
Q Consensus       162 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~  190 (540)
                      +|.....+|.. ++. ..++..+++.+|..
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCcc
Confidence            99877788887 554 45677888887754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.06  E-value=4.5e-06  Score=77.65  Aligned_cols=227  Identities=15%  Similarity=0.098  Sum_probs=148.4

Q ss_pred             hcCCCeEEEccCCCCC-----CCCC-cCCCCCccEEEcccCCC--CCcccc------HHHHhcCccCcEEEcCCCCCCC-
Q 009194           35 IQKDPIAISLPHRDIQ-----ELPE-RLQCPNLQLFLLYTEGN--GPMQVS------DHFFEGMEGLKVLQFPGIGSSS-   99 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~-----~l~~-~~~~~~L~~L~l~~~~~--~~~~~~------~~~~~~l~~L~~L~l~~~~~~~-   99 (540)
                      -...+..+++++|.+.     .+.+ +.+.+.||..++++--.  ...++|      ...+..+++|++|++++|.+.. 
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            3567899999999882     2222 22667888888876432  122333      3344577899999999998752 


Q ss_pred             ----CCcccccCCCCcEEEcCCCccCC-c-c-------------cccCCCCCCEEEecCCCCcc-----cchhcCCCCCC
Q 009194          100 ----LPSSLGRLINLQTLCLDWCELAD-I-A-------------AIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRL  155 (540)
Q Consensus       100 ----l~~~l~~l~~L~~L~l~~~~~~~-~-~-------------~i~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L  155 (540)
                          +-.-+..+..|++|.+.+|.+.. - .             .++.-++|+++....|++..     +...+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence                22345678899999999998653 1 1             23445789999999987763     33446677899


Q ss_pred             CEEECCCCccccccc----hhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcc---
Q 009194          156 QLLDLSNCWWLEVIA----PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD---  228 (540)
Q Consensus       156 ~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---  228 (540)
                      +.+.+..|. +..-.    ...+..++.|+.|++..|.++    .....+....+...++|+.|.+..|....=...   
T Consensus       188 eevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft----~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  188 EEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFT----LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             ceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhh----hHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            999998876 32222    122568999999999999887    223334556677788999999998874432211   


Q ss_pred             --cc--ccCccEEEEEecCCCCCCCC---ccccccccccEEEEec
Q 009194          229 --FV--SVELQRYKIRIGDGPEDEFD---PLLVKSEASRLMMLKG  266 (540)
Q Consensus       229 --~~--~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~  266 (540)
                        +.  .++|+.+.+..+.+......   ......|.|.+|.+++
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence              11  16888888866554322110   1133467777777776

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.06  E-value=1.4e-05  Score=77.88  Aligned_cols=153  Identities=20%  Similarity=0.218  Sum_probs=89.7

Q ss_pred             CCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChH
Q 009194          309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS  388 (540)
Q Consensus       309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  388 (540)
                      .+++++.|++++| .++.++        .-.++|+.|.+.+|.+++.++..    .  .++|++|.+.+|..++.+|   
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP--------~LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~sLP---  111 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLP--------VLPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEISGLP---  111 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccC--------CCCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCcccccccc---
Confidence            3577888888888 566552        12236888888888887766632    1  2578888888887777664   


Q ss_pred             HHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhc-
Q 009194          389 MAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSL-  467 (540)
Q Consensus       389 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l-  467 (540)
                           ++|+.|++.+ .....+.           +                -.++|+.|.+.+.......+..   ..+ 
T Consensus       112 -----~sLe~L~L~~-n~~~~L~-----------~----------------LPssLk~L~I~~~n~~~~~~lp---~~LP  155 (426)
T PRK15386        112 -----ESVRSLEIKG-SATDSIK-----------N----------------VPNGLTSLSINSYNPENQARID---NLIS  155 (426)
T ss_pred             -----cccceEEeCC-CCCcccc-----------c----------------CcchHhheeccccccccccccc---cccC
Confidence                 2577777652 2222211           0                1357777777543322111100   112 


Q ss_pred             CCCcEEEEecccccceeccccccCCCCccccccccceeecccCCC----CC--CC-CCCCceEeecC
Q 009194          468 GQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK----LS--SF-ASPEDVIHTEM  527 (540)
Q Consensus       468 ~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~----L~--~~-~~l~~l~i~~c  527 (540)
                      ++|++|+|.+|..+..   .+.++        ++|+.|.+..+..    +.  .+ +++ .+.+.+|
T Consensus       156 sSLk~L~Is~c~~i~L---P~~LP--------~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~  210 (426)
T PRK15386        156 PSLKTLSLTGCSNIIL---PEKLP--------ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS  210 (426)
T ss_pred             CcccEEEecCCCcccC---ccccc--------ccCcEEEecccccccccCccccccccc-Eechhhh
Confidence            6899999999986531   12222        4788888776431    11  33 334 7777777

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=1.7e-06  Score=78.49  Aligned_cols=198  Identities=16%  Similarity=0.072  Sum_probs=116.6

Q ss_pred             ccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC---CCcccccCCCCcEEEcCCCccCC-cccc-cCCCCCCEE
Q 009194           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELAD-IAAI-GQLKKLEIL  135 (540)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---l~~~l~~l~~L~~L~l~~~~~~~-~~~i-~~l~~L~~L  135 (540)
                      +.-+.+.++.+........+-+.+..++.+++.+|.+++   +...+.++|+|++|+++.|.+.. +... ..+.+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            335556666653444444455668888999999998764   44456788999999999988775 4555 477889999


Q ss_pred             EecCCCCc--ccchhcCCCCCCCEEECCCCccccccch--hhhh-cCCccceEEccCCCcccccccCCCccchhhc-cCC
Q 009194          136 SLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAP--NVIS-KLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERL  209 (540)
Q Consensus       136 ~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~--~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l  209 (540)
                      -+.++.+.  ........++.++.|+++.|.. ..+-.  ..+. --+.++.+...+|....       +.....+ +-.
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~-rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~-------w~~~~~l~r~F  198 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL-RQLNLDDNCIEDWSTEVLTLHQLPCLEQL-------WLNKNKLSRIF  198 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchh-hhhccccccccccchhhhhhhcCCcHHHH-------HHHHHhHHhhc
Confidence            88887443  5555677788888888877631 11100  0011 12234444444443320       0001111 235


Q ss_pred             CCccEEEeecCCCCCCCccccc---cCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          210 TELTTLEIEVPDAEILPPDFVS---VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       210 ~~L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      +++..+-+..+++......-..   +.+.-|++....+.+|+.......++.|+.|.+..
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~  258 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE  258 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence            6677777776664433332222   44555666666666676666666666666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.98  E-value=4.2e-05  Score=74.68  Aligned_cols=134  Identities=13%  Similarity=0.263  Sum_probs=86.3

Q ss_pred             hcccceeeeccccCcccccccCccCCCCc-cccEEeeccccCceeeeccccccccccCcccceecccccccccccccccC
Q 009194          283 LQRTEDLWLETLEGVQSVVHELDDGEGFP-RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQL  361 (540)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  361 (540)
                      +++++.|.+.+| .++.+.       .+| +|+.|.+.+|.+++.+++       .-.++|++|.+.+|..+..++    
T Consensus        51 ~~~l~~L~Is~c-~L~sLP-------~LP~sLtsL~Lsnc~nLtsLP~-------~LP~nLe~L~Ls~Cs~L~sLP----  111 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLP-------VLPNELTEITIENCNNLTTLPG-------SIPEGLEKLTVCHCPEISGLP----  111 (426)
T ss_pred             hcCCCEEEeCCC-CCcccC-------CCCCCCcEEEccCCCCcccCCc-------hhhhhhhheEccCcccccccc----
Confidence            488899999987 444432       233 699999999999877642       224689999999998776544    


Q ss_pred             CCCCCCCCCCeEEEee--CCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCcc
Q 009194          362 REDQSFSNLRIINVDS--CRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIY  439 (540)
Q Consensus       362 ~~~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~  439 (540)
                            +.|+.|.+..  |..+..+|        ++|+.|.+.++.......                        ....
T Consensus       112 ------~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~------------------------lp~~  153 (426)
T PRK15386        112 ------ESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQAR------------------------IDNL  153 (426)
T ss_pred             ------cccceEEeCCCCCcccccCc--------chHhheeccccccccccc------------------------cccc
Confidence                  4577888753  33345443        357888875533221110                        0001


Q ss_pred             CCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194          440 CCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC  478 (540)
Q Consensus       440 ~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C  478 (540)
                      -.++|+.|++.+|..+. +|. .+.   .+|++|+++.+
T Consensus       154 LPsSLk~L~Is~c~~i~-LP~-~LP---~SLk~L~ls~n  187 (426)
T PRK15386        154 ISPSLKTLSLTGCSNII-LPE-KLP---ESLQSITLHIE  187 (426)
T ss_pred             cCCcccEEEecCCCccc-Ccc-ccc---ccCcEEEeccc
Confidence            13689999999988664 221 111   58888888764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.94  E-value=1.1e-06  Score=88.97  Aligned_cols=129  Identities=25%  Similarity=0.332  Sum_probs=91.1

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEE
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS  136 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~  136 (540)
                      .+..+..+.+..|.+  ...... ...+++|..|++.+|.+..+...+..+++|++|++++|.|+....+..+..|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i--~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLI--AKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhh--hhhhcc-cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhhe
Confidence            345555566666654  222222 25678888888888888776665677888888888888888877777888888888


Q ss_pred             ecCCCCcccchhcCCCCCCCEEECCCCccccccch-hhhhcCCccceEEccCCCcc
Q 009194          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP-NVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  191 (540)
                      +.+|.+..+. .+..++.|+.+++++|. +..+.. . ...+.+++.+++.++.+.
T Consensus       147 l~~N~i~~~~-~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLISDIS-GLESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcchhcc-CCccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence            8888887664 35568888888888877 445444 1 367778888888777654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.94  E-value=1.6e-06  Score=87.72  Aligned_cols=187  Identities=21%  Similarity=0.260  Sum_probs=123.7

Q ss_pred             cCCCeEEEccCCCCCCC-CCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           36 QKDPIAISLPHRDIQEL-PERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ...+..+++..+.+... .....+.+++.+++.+|.+  ..+... ...+.+|++|++++|.|+.+.. +..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccc-hhhhhcchheeccccccccccc-hhhccchhhhe
Confidence            44566666777776553 2244778899999999886  443332 3678999999999999887654 56777799999


Q ss_pred             cCCCccCCcccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      +.+|.++....+..+++|+.+++++|.+..+... ...+.+++.+++.++. +..+..  +..+..+..+++..+.+.  
T Consensus       147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~--  221 (414)
T KOG0531|consen  147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS--  221 (414)
T ss_pred             eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce--
Confidence            9999988877777799999999999988877653 5788888989888876 333332  344444444455555443  


Q ss_pred             cccCCCccchhhccCCC--CccEEEeecCCCCCCCccccc-cCccEEEE
Q 009194          194 KVEGGSNASLVELERLT--ELTTLEIEVPDAEILPPDFVS-VELQRYKI  239 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l  239 (540)
                              .+..+..+.  +|+.+.+..+.+...+..+.. ..+..+.+
T Consensus       222 --------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~  262 (414)
T KOG0531|consen  222 --------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDL  262 (414)
T ss_pred             --------eccCcccchhHHHHHHhcccCccccccccccccccccccch
Confidence                    112222222  267777777776655322222 44444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=1.1e-05  Score=52.12  Aligned_cols=38  Identities=29%  Similarity=0.435  Sum_probs=20.1

Q ss_pred             CCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccc
Q 009194          109 NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLP  146 (540)
Q Consensus       109 ~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp  146 (540)
                      +|++|++++|.+++ +..+++|++|++|++++|.++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            45555555555555 333555666666666665555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=3e-05  Score=50.19  Aligned_cols=34  Identities=41%  Similarity=0.554  Sum_probs=18.2

Q ss_pred             CCCEEEecCCCCcccchhcCCCCCCCEEECCCCc
Q 009194          131 KLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW  164 (540)
Q Consensus       131 ~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~  164 (540)
                      +|++|++++|+++.+|..+++|++|++|++++|.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            4555555555555555555555555555555554

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.84  E-value=2e-06  Score=89.26  Aligned_cols=146  Identities=18%  Similarity=0.198  Sum_probs=82.6

Q ss_pred             CCccccEEeeccccCceeeeccccccccccCcccceecccc-cccccccccccCCCCCCCCCCCeEEEeeCCCCccccCh
Q 009194          309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMF-LTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSF  387 (540)
Q Consensus       309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~-c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  387 (540)
                      .++.|+.+.+.+|..+....   .......++.|+.|++.+ |......+.........+++|+.|++.+|..+++....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            36777777777776655421   111456677777777776 23322222111111444577777777777666666444


Q ss_pred             HHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhc
Q 009194          388 SMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSL  467 (540)
Q Consensus       388 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l  467 (540)
                      .....+++|+.|.+.+|..+++.+                      .......++.|++|+++.|..+++-.......++
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~g----------------------l~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c  320 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDEG----------------------LVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC  320 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchhH----------------------HHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence            444456777777777777655432                      1122234567777777777777665444445566


Q ss_pred             CCCcEEEEeccc
Q 009194          468 GQLQHLEIRNCR  479 (540)
Q Consensus       468 ~~L~~L~i~~C~  479 (540)
                      ++|+.+.+.+++
T Consensus       321 ~~l~~l~~~~~~  332 (482)
T KOG1947|consen  321 PNLRELKLLSLN  332 (482)
T ss_pred             cchhhhhhhhcC
Confidence            666665544443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=3.1e-06  Score=67.95  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=48.1

Q ss_pred             hcCccCcEEEcCCCCCCCCCcccc-cCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEE
Q 009194           82 EGMEGLKVLQFPGIGSSSLPSSLG-RLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD  159 (540)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~l~~~l~-~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~  159 (540)
                      +....|+..++++|.+.++|+.+. +++-.++|++.+|.+++ |..+..++.|+.|+++.|.+...|..+..+.++-.|+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            344445555555555555554442 33455555555555555 5555555556666666555555555555555555555


Q ss_pred             CCCCccccccchh
Q 009194          160 LSNCWWLEVIAPN  172 (540)
Q Consensus       160 l~~~~~~~~~~~~  172 (540)
                      ..++. ...++.+
T Consensus       130 s~~na-~~eid~d  141 (177)
T KOG4579|consen  130 SPENA-RAEIDVD  141 (177)
T ss_pred             CCCCc-cccCcHH
Confidence            55544 3444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=7.6e-05  Score=64.33  Aligned_cols=121  Identities=17%  Similarity=0.182  Sum_probs=73.2

Q ss_pred             CeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCccc-ccCCCCcEEEcC
Q 009194           39 PIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCLD  116 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l-~~l~~L~~L~l~  116 (540)
                      =+++++.+..+..+.... -......+++++|+.  .....  |..++.|.+|.+.+|+|..+...+ ..+++|.+|.+.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl--~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDL--RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccch--hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            455666655554333322 233455677777765  32222  567777777777777777665444 345667777777


Q ss_pred             CCccCC---cccccCCCCCCEEEecCCCCcccchh----cCCCCCCCEEECCCC
Q 009194          117 WCELAD---IAAIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNC  163 (540)
Q Consensus       117 ~~~~~~---~~~i~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~  163 (540)
                      +|.+.+   ...+..+++|++|.+-+|.++.-+..    +..+++|+.||..+.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            777654   45666677777777777766643322    556666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.70  E-value=1.2e-06  Score=88.64  Aligned_cols=110  Identities=24%  Similarity=0.207  Sum_probs=85.5

Q ss_pred             HHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cc-cccCCCCCCEEEecCCCCcccchhcCCCCCCC
Q 009194           79 HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IA-AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ  156 (540)
Q Consensus        79 ~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~-~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~  156 (540)
                      ..+.-++.|+.|++++|.+.+.. .+..|++|++||+++|.+.. |. .-..++ |+.|.+++|.++++ .++.++.+|+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~  257 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLY  257 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHHhhhhhh
Confidence            33456789999999999998766 67899999999999999887 42 222344 99999999988887 4689999999


Q ss_pred             EEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          157 LLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       157 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      .||+++|-..+.---.-+..+..|+.|++.+|.+-
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99999875322211122678889999999998664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=1.5e-05  Score=72.55  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=35.5

Q ss_pred             cCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccc
Q 009194          338 VFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI  410 (540)
Q Consensus       338 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  410 (540)
                      -||++..+.+.+|+ +++...+.-  ...+|.+-.|++.. .++.++.....+..+++|..|.+...|-...+
T Consensus       197 ~Fpnv~sv~v~e~P-lK~~s~ek~--se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGP-LKTESSEKG--SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hcccchheeeecCc-ccchhhccc--CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            45666666665554 222211111  33455555555554 35555544444556677777777766555433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.59  E-value=0.00012  Score=63.02  Aligned_cols=103  Identities=19%  Similarity=0.195  Sum_probs=86.4

Q ss_pred             CCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC--cccccCCCCcEEE
Q 009194           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLC  114 (540)
Q Consensus        37 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~  114 (540)
                      .....+++++|++..++.+..++.|.+|.+..|.+  ..+...+-..+++|.+|.+.+|.+..+.  ..+..+|.|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            35678999999998888888999999999999997  6666666667899999999999987543  2367899999999


Q ss_pred             cCCCccCC-----cccccCCCCCCEEEecCCC
Q 009194          115 LDWCELAD-----IAAIGQLKKLEILSLAYSN  141 (540)
Q Consensus       115 l~~~~~~~-----~~~i~~l~~L~~L~l~~~~  141 (540)
                      +-+|.+++     .-.+.++++|++||...-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            99999775     3688999999999998753

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.54  E-value=5.6e-06  Score=66.48  Aligned_cols=111  Identities=18%  Similarity=0.215  Sum_probs=94.6

Q ss_pred             cCCCeEEEccCCCCCCCCC----cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCc
Q 009194           36 QKDPIAISLPHRDIQELPE----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~  111 (540)
                      ......++++.+.+-.+++    .+....|...++++|.+  .++|..+...++.++.+++.+|.+.++|..+..++.|+
T Consensus        26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR  103 (177)
T ss_pred             HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence            4456778888887754443    34667788899999997  88999988889999999999999999999999999999


Q ss_pred             EEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchh
Q 009194          112 TLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVE  148 (540)
Q Consensus       112 ~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~  148 (540)
                      .|+++.|.+.. |..+..|.+|-+|+..++.+..+|-.
T Consensus       104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d  141 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD  141 (177)
T ss_pred             hcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence            99999999887 88888899999999999987777765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=1.6e-05  Score=71.73  Aligned_cols=78  Identities=22%  Similarity=0.236  Sum_probs=33.4

Q ss_pred             cCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCC
Q 009194           86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNC  163 (540)
Q Consensus        86 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~  163 (540)
                      +.+.|++-+|.+.++.- ..+++.|++|.|+-|.|+....+..+++|+.|++..|.|..+..  .+.++++|+.|++..|
T Consensus        20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            34444444444433221 23444444444444444444444444444444444444443322  1344444444444443


Q ss_pred             c
Q 009194          164 W  164 (540)
Q Consensus       164 ~  164 (540)
                      .
T Consensus        99 P   99 (388)
T KOG2123|consen   99 P   99 (388)
T ss_pred             C
Confidence            3

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.00023  Score=61.50  Aligned_cols=73  Identities=14%  Similarity=0.216  Sum_probs=61.7

Q ss_pred             ccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccc
Q 009194          335 RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI  410 (540)
Q Consensus       335 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  410 (540)
                      ....+++++.|.+.+|..+.+|+.+.+  .+-.++|+.|.|++|+++++-. ...+..+++|+.|.|.+.+.+...
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l--~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERL--GGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHh--cccccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhhch
Confidence            556788899999999999999998887  4478999999999999999873 456788999999999997766543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=8e-05  Score=67.31  Aligned_cols=78  Identities=24%  Similarity=0.210  Sum_probs=53.6

Q ss_pred             CCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC---cccccCCCCCCE
Q 009194           58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEI  134 (540)
Q Consensus        58 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~  134 (540)
                      +.+.+.|+.++|+.  .++  ++..+++.|.+|.++-|.|+.+-. +..|.+|+.|+|+.|.|.+   +.-+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            44566777777775  332  345677788888887777776543 5677778888887777765   355667777777


Q ss_pred             EEecCC
Q 009194          135 LSLAYS  140 (540)
Q Consensus       135 L~l~~~  140 (540)
                      |-+..|
T Consensus        93 LWL~EN   98 (388)
T KOG2123|consen   93 LWLDEN   98 (388)
T ss_pred             HhhccC
Confidence            777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.72  E-value=0.00098  Score=60.14  Aligned_cols=108  Identities=22%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             CCCCcEEEcCCCccCCcccccCCCCCCEEEecCC--CCc-ccchhcCCCCCCCEEECCCCcc--ccccchhhhhcCCccc
Q 009194          107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYS--NIN-QLPVEIGQLTRLQLLDLSNCWW--LEVIAPNVISKLSQLE  181 (540)
Q Consensus       107 l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~--~~~-~lp~~~~~l~~L~~L~l~~~~~--~~~~~~~~l~~l~~L~  181 (540)
                      +..|+.|++.++.++....+-.|++|++|.++.|  .+. .++.-..++++|+++++++|+.  +..+++  +.++.+|.
T Consensus        42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence            3344444444444433344444555555555555  222 2332233345555555555441  122222  34455555


Q ss_pred             eEEccCCCcccccccCCCccchhhccCCCCccEEEeecCC
Q 009194          182 ELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD  221 (540)
Q Consensus       182 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  221 (540)
                      .|++.+|....     -....-..+.-+++|..|+-....
T Consensus       120 ~Ldl~n~~~~~-----l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  120 SLDLFNCSVTN-----LDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhcccCCccc-----cccHHHHHHHHhhhhccccccccC
Confidence            55555554431     111222334445555555544443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.00037  Score=60.22  Aligned_cols=72  Identities=15%  Similarity=0.203  Sum_probs=57.2

Q ss_pred             ccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCCCCCC
Q 009194          438 IYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSF  516 (540)
Q Consensus       438 ~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~L~~~  516 (540)
                      +.++++++.|.+.+|..+.+.+..-+.+-.++|+.|+|++|+.+++... ..      +..+++|+.|.|+++|...+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~------L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-AC------LLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HH------HHHhhhhHHHHhcCchhhhch
Confidence            3457889999999999998886655556779999999999999988522 22      446899999999999887755

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.42  E-value=0.0021  Score=58.06  Aligned_cols=104  Identities=22%  Similarity=0.253  Sum_probs=69.3

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCC--CC-CCCcccccCCCCcEEEcCCCccCC---cccccCCC
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG--SS-SLPSSLGRLINLQTLCLDWCELAD---IAAIGQLK  130 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~-~l~~~l~~l~~L~~L~l~~~~~~~---~~~i~~l~  130 (540)
                      ....|+.+.+.+...  ..+..  |..+++|+.|.++.|+  +. .++.....+++|+++++++|++..   ...+..+.
T Consensus        41 ~~~~le~ls~~n~gl--tt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   41 EFVELELLSVINVGL--TTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccchhhhhhhccce--eeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            555666666666654  22222  3567888888888883  32 355445677888888888888775   35666777


Q ss_pred             CCCEEEecCCCCcccch----hcCCCCCCCEEECCCCc
Q 009194          131 KLEILSLAYSNINQLPV----EIGQLTRLQLLDLSNCW  164 (540)
Q Consensus       131 ~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~l~~~~  164 (540)
                      +|..|++..|..+.+-.    .+.-+++|++|+-....
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            88888888886654332    25567888888765543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.93  E-value=0.0038  Score=56.58  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=44.3

Q ss_pred             cCCCeEEEccCCCCCC-----CCCcC-CCCCccEEEcccCCCC--Cccc------cHHHHhcCccCcEEEcCCCCCC-CC
Q 009194           36 QKDPIAISLPHRDIQE-----LPERL-QCPNLQLFLLYTEGNG--PMQV------SDHFFEGMEGLKVLQFPGIGSS-SL  100 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~--~~~~------~~~~~~~l~~L~~L~l~~~~~~-~l  100 (540)
                      ...+..+++++|.+..     +...+ +-++|+..++++.-.+  ..++      ....+.+|++|...+++.|.+. ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4567777777777621     22222 4556666666553220  1111      1222346677777777776654 22


Q ss_pred             Cc----ccccCCCCcEEEcCCCcc
Q 009194          101 PS----SLGRLINLQTLCLDWCEL  120 (540)
Q Consensus       101 ~~----~l~~l~~L~~L~l~~~~~  120 (540)
                      |+    -++.-..|.+|.+++|.+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCC
Confidence            22    334556666777766654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.83  E-value=0.017  Score=52.48  Aligned_cols=164  Identities=16%  Similarity=0.188  Sum_probs=101.8

Q ss_pred             CcCCCCCccEEEcccCCCCCccc--cHHHHhcCccCcEEEcCCCCCCCC-----C---------cccccCCCCcEEEcCC
Q 009194           54 ERLQCPNLQLFLLYTEGNGPMQV--SDHFFEGMEGLKVLQFPGIGSSSL-----P---------SSLGRLINLQTLCLDW  117 (540)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~l-----~---------~~l~~l~~L~~L~l~~  117 (540)
                      ...+||+|+..++++|.+++...  ..++.++-..|..|.+.+|.+..+     .         .....-|.|++.....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            34589999999999999843322  245567889999999999987532     1         1123457788888888


Q ss_pred             CccCC-cc-----cccCCCCCCEEEecCCCCcc-----c-chhcCCCCCCCEEECCCCccccccc---hhhhhcCCccce
Q 009194          118 CELAD-IA-----AIGQLKKLEILSLAYSNINQ-----L-PVEIGQLTRLQLLDLSNCWWLEVIA---PNVISKLSQLEE  182 (540)
Q Consensus       118 ~~~~~-~~-----~i~~l~~L~~L~l~~~~~~~-----l-p~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~  182 (540)
                      |++.. +.     .+..=.+|+.+.+..|.|..     + -.++..+.+|+.||+..|.+...-.   ..++...+.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            88654 31     12222478888888886651     1 1235667888888888876332211   112455667888


Q ss_pred             EEccCCCcccccccCCCccchhhcc--CCCCccEEEeecCC
Q 009194          183 LYMGNGFSGWEKVEGGSNASLVELE--RLTELTTLEIEVPD  221 (540)
Q Consensus       183 L~l~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~  221 (540)
                      |.+..|..+    ..+..+....+.  ..++|+.|....|.
T Consensus       247 L~lnDClls----~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         247 LRLNDCLLS----NEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             ccccchhhc----cccHHHHHHHhhhhcCCCccccccchhh
Confidence            888888665    222223333332  34566666555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.73  E-value=0.026  Score=46.53  Aligned_cols=98  Identities=15%  Similarity=0.319  Sum_probs=34.8

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCC
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE  133 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~  133 (540)
                      ++.+|+.+.+...   ...+....|.++..|+.+.+..+ +..++ ..+.+++.++++.+.. .+..  ...+..+.+|+
T Consensus        10 ~~~~l~~i~~~~~---~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen   10 NCSNLESITFPNT---IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             T-TT--EEEETST-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred             CCCCCCEEEECCC---eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence            4445555554431   23344444555555555555443 33332 2334444555555543 2221  23444455555


Q ss_pred             EEEecCCCCcccchh-cCCCCCCCEEECC
Q 009194          134 ILSLAYSNINQLPVE-IGQLTRLQLLDLS  161 (540)
Q Consensus       134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~  161 (540)
                      .+.+..+ +..++.. +.++ +++.+.+.
T Consensus        85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   85 NIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             EEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            5555432 3333322 3333 55555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.40  E-value=0.042  Score=45.28  Aligned_cols=105  Identities=17%  Similarity=0.304  Sum_probs=57.2

Q ss_pred             cHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCC
Q 009194           77 SDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQL  152 (540)
Q Consensus        77 ~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l  152 (540)
                      +...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..  ...+..+++|+.+.+.. .+..++.. +..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            344567788888888874 454444 35677778888888774 555  26677777888888865 44444443 5668


Q ss_pred             CCCCEEECCCCccccccchhhhhcCCccceEEccC
Q 009194          153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (540)
Q Consensus       153 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (540)
                      ++++.+.+..+  +..++...+.++ +|+.+.+..
T Consensus        81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            88888887653  455555556666 777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.20  E-value=0.0089  Score=31.98  Aligned_cols=19  Identities=32%  Similarity=0.557  Sum_probs=10.4

Q ss_pred             CCEEEecCCCCcccchhcC
Q 009194          132 LEILSLAYSNINQLPVEIG  150 (540)
Q Consensus       132 L~~L~l~~~~~~~lp~~~~  150 (540)
                      |++|++++|.++.+|..++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.18  E-value=0.022  Score=30.44  Aligned_cols=16  Identities=38%  Similarity=0.621  Sum_probs=6.6

Q ss_pred             CcEEEcCCCCCCCCCc
Q 009194           87 LKVLQFPGIGSSSLPS  102 (540)
Q Consensus        87 L~~L~l~~~~~~~l~~  102 (540)
                      |++|++++|+++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3444444444443333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.00  E-value=0.076  Score=26.27  Aligned_cols=16  Identities=31%  Similarity=0.607  Sum_probs=6.1

Q ss_pred             CCCEEEecCCCCcccc
Q 009194          131 KLEILSLAYSNINQLP  146 (540)
Q Consensus       131 ~L~~L~l~~~~~~~lp  146 (540)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555544443

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.61  E-value=0.18  Score=28.13  Aligned_cols=17  Identities=18%  Similarity=0.356  Sum_probs=10.7

Q ss_pred             CCccEEEEccCCCcccc
Q 009194          442 QNLTKVTVWSCHRLKYL  458 (540)
Q Consensus       442 ~~L~~L~l~~C~~l~~l  458 (540)
                      ++|++|++++|+++++.
T Consensus         2 ~~L~~L~l~~C~~itD~   18 (26)
T smart00367        2 PNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCEeCCCCCCCcCHH
Confidence            55666666666666654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.56  E-value=0.15  Score=28.49  Aligned_cols=18  Identities=22%  Similarity=0.510  Sum_probs=13.2

Q ss_pred             cCCCcEEEEeccccccee
Q 009194          467 LGQLQHLEIRNCRSIEGV  484 (540)
Q Consensus       467 l~~L~~L~i~~C~~L~~~  484 (540)
                      +++|++|++++|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            467788888888777764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.85  E-value=0.58  Score=25.98  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=11.1

Q ss_pred             CCCCEEEecCCCCcccchh
Q 009194          130 KKLEILSLAYSNINQLPVE  148 (540)
Q Consensus       130 ~~L~~L~l~~~~~~~lp~~  148 (540)
                      .+|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666655554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.85  E-value=0.58  Score=25.98  Aligned_cols=19  Identities=26%  Similarity=0.433  Sum_probs=11.1

Q ss_pred             CCCCEEEecCCCCcccchh
Q 009194          130 KKLEILSLAYSNINQLPVE  148 (540)
Q Consensus       130 ~~L~~L~l~~~~~~~lp~~  148 (540)
                      .+|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666655554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	540
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 18/131 (13%)

Query: 93  PGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQ 151
             + S+        L+NLQ+L L+W  +  + A+I  L+ L+ L +  S ++ L   I  
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL----E 207
           L +L+ LDL  C  L    P +    + L+ L + +             ++L+ L     
Sbjct: 228 LPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKD------------CSNLLTLPLDIH 274

Query: 208 RLTELTTLEIE 218
           RLT+L  L++ 
Sbjct: 275 RLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 26/147 (17%)

Query: 84  MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNI 142
             G   L+   +     P    RL +LQ + +D   L ++   + Q   LE L+LA + +
Sbjct: 80  QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVI--------APNVISKLSQLEELYMGNGFSGWEK 194
             LP  I  L RL+ L +  C  L  +        A      L  L+ L +         
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL--------- 190

Query: 195 VEGGSNASLVEL----ERLTELTTLEI 217
                   +  L      L  L +L+I
Sbjct: 191 ----EWTGIRSLPASIANLQNLKSLKI 213

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.2 bits (196), Expect = 3e-16
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 98  SSLPSSLGRLINLQTLCLDWC-ELADI-AAIGQLKKLEILSLA-YSNINQLPVEIGQLTR 154
           S+L  ++  L  L+ L L  C  L +     G    L+ L L   SN+  LP++I +LT+
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L+ LDL  C  L  + P++I++L     + +  
Sbjct: 279 LEKLDLRGCVNLSRL-PSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 5e-11
 Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 7/117 (5%)

Query: 74  MQVSDHFFEGMEGLKVLQFPGIGS-SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKL 132
           M  S H      G + L F G  +       L +         +                
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS--AWRQANSNNP 58

Query: 133 EILSLAYSNINQLPVEIGQLTRLQL--LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           +I +     +      +   T+     L+L +   L    P+   +LS L+ + +  
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSV-PLPQF-PDQAFRLSHLQHMTIDA 113

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 99  SLPSSLGRLINLQTLCLDWC-ELADI-AAIGQLKKLEILSLAY-SNINQLPVEIGQLTRL 155
           + P   G    L+ L L  C  L  +   I +L +LE L L    N+++LP  I QL   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 156 QLLDLSNC 163
            ++ +   
Sbjct: 304 CIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 98  SSLPSSLGRLINLQTLCLDWCE-LADI-AAIGQLKKLEILSLAYSNINQLP 146
            +LP  + RL  L+ L L  C  L+ + + I QL    I+ +      QL 
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.6 bits (179), Expect = 4e-14
 Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
           + +    +  +       NL+   L   GN   Q++D      +  L  L       + +
Sbjct: 49  LVVAGEKVASIQGIEYLTNLEY--LNLNGN---QITDISPLSNLVKLTNLYIGTNKITDI 103

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
            + L  L NL+ L L+   ++DI+ +  L K+  L+L  ++       +  +T L  L +
Sbjct: 104 SA-LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEG---------GSN--ASLVELER 208
           +    ++ + P  I+ L+ L  L +  N       +             N    +  +  
Sbjct: 163 TES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 209 LTELTTLEI 217
           +T L +L+I
Sbjct: 220 MTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
             +   L ++  L +   ++A I  I  L  LE L+L  + I  +   +  L +L  L +
Sbjct: 37  VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYI 95

Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
                +  I+   +  L+ L ELY+  +  S            +  L  LT++ +L +
Sbjct: 96  GTN-KITDISA--LQNLTNLRELYLNEDNIS-----------DISPLANLTKMYSLNL 139

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 29/186 (15%), Positives = 75/186 (40%), Gaps = 27/186 (14%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLGR 106
           ++++       +L    L    N   Q+ D     +  L  L +     + +   + +  
Sbjct: 167 VKDVTPIANLTDLYS--LSLNYN---QIED--ISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           +  L +L +   ++ D++ +  L +L  L +  + I+ +   +  LT+L++L++ +    
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN--- 275

Query: 167 EVIAPNVISKLSQLEELYMGN---------GFSGWEKVEG---GSN--ASLVELERLTEL 212
           ++   +V++ LSQL  L++ N            G   +       N    +  L  L+++
Sbjct: 276 QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKM 335

Query: 213 TTLEIE 218
            + +  
Sbjct: 336 DSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.6 bits (153), Expect = 8e-11
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 19/134 (14%)

Query: 86  GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL 145
           G   L       + +      L       L    + D+    +L+ +  L +A   +  +
Sbjct: 1   GAATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

Query: 146 PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASL 203
              I  LT L+ L+L+    +  I+P  +S L +L  LY+G             N    +
Sbjct: 60  Q-GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGT------------NKITDI 103

Query: 204 VELERLTELTTLEI 217
             L+ LT L  L +
Sbjct: 104 SALQNLTNLRELYL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 11/141 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
           I ++        L    L    N   +++D      +  L  L+      S + + +  L
Sbjct: 211 ITDITPVANMTRLNS--LKIGNN---KITDLSPLANLSQLTWLEIGTNQISDINA-VKDL 264

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166
             L+ L +   +++DI+ +  L +L  L L  + +    +E IG LT L  L LS    +
Sbjct: 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-I 323

Query: 167 EVIAPNVISKLSQLEELYMGN 187
             I P  ++ LS+++     N
Sbjct: 324 TDIRP--LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL- 100
           + + +  I +L        L    L    N   Q+SD     ++ L  L+   +GS+ + 
Sbjct: 226 LKIGNNKITDLSPLANLSQLTW--LEIGTN---QISD--INAVKDLTKLKMLNVGSNQIS 278

Query: 101 -PSSLGRLINLQTLCLDWCELA--DIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
             S L  L  L +L L+  +L   D+  IG L  L  L L+ ++I  +   +  L+++  
Sbjct: 279 DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDS 337

Query: 158 LDLSN 162
            D +N
Sbjct: 338 ADFAN 342

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.5 bits (182), Expect = 5e-14
 Identities = 82/571 (14%), Positives = 163/571 (28%), Gaps = 217/571 (38%)

Query: 12  IATEERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGN 71
           I   +R++N   V            K  ++   P+  +++    L+ P   + +      
Sbjct: 113 IEQRDRLYNDNQV----------FAKYNVSRLQPYLKLRQALLELR-PAKNVLI------ 155

Query: 72  GPMQVSDHFFEGMEG-------LKVLQ-------FPG------IGSSSLPSSLGRLINLQ 111
                      G+ G       L V                  + + + P ++  L  LQ
Sbjct: 156 -------D---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQ 203

Query: 112 TLCL----DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ-----LLDLSN 162
            L      +W   +D ++  +L            I+ +  E+ +L + +     LL L N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKL-----------RIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 163 CWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222
               +                   N F+   K+       L+        TT   +V D 
Sbjct: 253 VQNAKAW-----------------NAFNLSCKI-------LL--------TTRFKQVTD- 279

Query: 223 EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML 282
                 F+S       I +     D     L   E   L+                 K L
Sbjct: 280 ------FLSAA-TTTHISL-----DHHSMTLTPDEVKSLL----------------LKYL 311

Query: 283 LQRTEDLWLETLEG---VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGS--------- 330
             R +DL  E L       S++ E    +G          +C ++  I+ S         
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 331 VRR--VRCEVFP--------LLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRK 380
            R+   R  VFP        LL     +   ++       +          ++       
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKSDVMVV--VNKLHKYSLVEKQPKES 424

Query: 381 LKYLFSFSMAKNLLRLQKVKVEDCDDL-KMIIGPDMEKPPTTQGFIEINAEDDPVHQGIY 439
              + S      +    KVK+E+   L + I+                  +   + +  +
Sbjct: 425 TISIPS------IYLELKVKLENEYALHRSIV------------------DHYNIPKT-F 459

Query: 440 CCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVF 499
              +L        +  +Y +S+     +G   HL  +N    E               +F
Sbjct: 460 DSDDLIPP-----YLDQYFYSH-----IGH--HL--KNIEHPE------------RMTLF 493

Query: 500 PKLHYLSLHWLP-KL----SSFASPEDVIHT 525
             + +L   +L  K+    +++ +   +++T
Sbjct: 494 RMV-FLDFRFLEQKIRHDSTAWNASGSILNT 523

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
              M  L  +    I  + L + +    N++ L ++     +   I  L  LE L +   
Sbjct: 40  EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK 98

Query: 141 NINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGS 199
           ++    +  +  LT L LLD+S+    +      I+ L ++  + +              
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDL------------SY 145

Query: 200 NASLVELERLTELTTLEI 217
           N ++ ++  L  L  L+ 
Sbjct: 146 NGAITDIMPLKTLPELKS 163

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 9e-10
 Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 12/150 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIG-SSS 99
           I+L + ++ +L       N++   L          ++ +   G+  L+ L+  G   +S 
Sbjct: 49  ITLANINVTDLTGIEYAHNIKD--LTINNI---HATNYNPISGLSNLERLRIMGKDVTSD 103

Query: 100 LPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
              +L  L +L  L +      D  +  I  L K+  + L+Y+      + +  L  L+ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L++     +       I    +L +LY  +
Sbjct: 164 LNIQFD-GVHDYRG--IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
              +  +  +     G+ +    L  L  L++L + +  + D   I    KL  L     
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQ 191

Query: 141 NIN 143
            I 
Sbjct: 192 TIG 194

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 11/125 (8%)

Query: 96  GSSSLPSSLGRLINLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLP--VEIGQ 151
           G S++ SSL  L  L++L L    +   ++       L  L L+ ++++  +     +G 
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
            + L+ L++S+         +   KL+ LE L +  N  S      G +    V  +   
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS------GANVVGWVLSDGCG 178

Query: 211 ELTTL 215
           EL  L
Sbjct: 179 ELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 3e-11
 Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 22/152 (14%)

Query: 51  ELPERLQCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLI 108
           ++   L+  +L+ L L     +G   V     +G   LK L   G   S  +   + R +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCV 200

Query: 109 NLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWL 166
           NL+ L +     +  I  +G    L+ L ++ + ++      I   T L+LL++S+    
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS---- 256

Query: 167 EVIAPNVI------SKLSQLEELYM-GNGFSG 191
                N          L  L+ L +  N F+G
Sbjct: 257 -----NQFVGPIPPLPLKSLQYLSLAENKFTG 283

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 63.0 bits (154), Expect = 2e-10
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 31/124 (25%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCEL---------------------------ADIAAIGQL 129
           S     ++     L+ L +   +                              ++  G  
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLS--GAC 293

Query: 130 KKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-N 187
             L  L L+ ++    +P   G  + L+ L LS+  +   +  + + K+  L+ L +  N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 188 GFSG 191
            FSG
Sbjct: 354 EFSG 357

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 7e-09
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 99  SLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRL 155
            +PS L    NL  + L    L       IG+L+ L IL L+ ++ +  +P E+G    L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 156 QLLDLSNCWWLEVIAPNVIS-----KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT 210
             LDL+          N+ +      + +       N  +G   V   ++    E     
Sbjct: 541 IWLDLNT---------NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 211 ELTTLEIEVPD 221
            L   +    +
Sbjct: 592 NLLEFQGIRSE 602

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 63  LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELA- 121
           + L     N            + GL+ L       +   S      +L +L L    L+ 
Sbjct: 55  IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 122 ---DIAAIGQLKKLEILSLAYSNIN-QLPVEIG-QLTRLQLLDLSNCWWLEVIAPNV--I 174
               + ++G    L+ L+++ + ++    V  G +L  L++LDLS               
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 175 SKLSQLEELYM-GNGFSG 191
               +L+ L + GN  SG
Sbjct: 175 DGCGELKHLAISGNKISG 192

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 103 SLGRLI--NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
              ++   +L +  L+    A  +++  L  LE L L+ S+IN           L  LDL
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 161 SNCWWLEVIAPNV-ISKLSQLEELYM-GNGFSGWEKVEGGSN-ASLVEL 206
           S       +     +   S L+ L +  N      KV GG    SL  L
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 29/159 (18%)

Query: 51  ELPERL-QCPNLQLFLLYTEGN---GPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLP 101
            +P     C  L+   L    N   G   +       M GLKVL     +F G     LP
Sbjct: 309 AVPPFFGSCSLLESLALS--SNNFSGE--LPMDTLLKMRGLKVLDLSFNEFSG----ELP 360

Query: 102 SSLGRL-INLQTLCLDWCEL-----ADIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTR 154
            SL  L  +L TL L           ++        L+ L L  +    ++P  +   + 
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQN-PKNTLQELYLQNNGFTGKIPPTLSNCSE 419

Query: 155 LQLLDLSNCWWLE-VIAPNVISKLSQLEELYM-GNGFSG 191
           L  L LS   +L   I P+ +  LS+L +L +  N   G
Sbjct: 420 LVSLHLSFN-YLSGTI-PSSLGSLSKLRDLKLWLNMLEG 456

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCEL--ADIAAIGQLKKLEILSLAYSNINQL----PVEIG 150
                  L RL       +                  +  L +  S  N L    P EIG
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM--SY-NMLSGYIPKEIG 653

Query: 151 QLTRLQLLDLS-NCWWLE-VIAPNVISKLSQLEELYM-GNGFSG 191
            +  L +L+L  N   +   I P+ +  L  L  L +  N   G
Sbjct: 654 SMPYLFILNLGHND--ISGSI-PDEVGDLRGLNILDLSSNKLDG 694

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 13/127 (10%)

Query: 95  IGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIGQ 151
                  +       +Q + + +  L       ++ ++KKL +L   Y+ +       G 
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
             +L  L+L+    +  I  N      Q+E L    N              ++ + + ++
Sbjct: 352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLK--------YIPNIFDAKSVS 402

Query: 211 ELTTLEI 217
            ++ ++ 
Sbjct: 403 VMSAIDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 15/129 (11%)

Query: 98  SSLPSSL-GRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAY--------SNINQL 145
           + +P++  G    ++ L     +L  I        +  +  +  +Y         N + L
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 146 PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEK-VEGGSNASL 203
                +   +  ++LSN   +      + S  S L  + + GN  +   K      N + 
Sbjct: 426 DPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 204 VELERLTEL 212
                LT +
Sbjct: 485 KNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 21/163 (12%)

Query: 43  SLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--------QFP 93
           S+  ++   L     +  N+    L    N   +     F     L  +        + P
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINL--SNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 94  GIGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIG 150
                    +      L ++ L + +L  +        L  L  + L+Y++ ++ P +  
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533

Query: 151 QLTRLQLLDLSNCWWL------EVIAPNVISKLSQLEELYMGN 187
             + L+   + N              P  I+    L +L +G+
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 35/145 (24%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI---------------------AAIGQLKKLEILS 136
           + +  ++ RL  L+   +                                  LK L  + 
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 137 LAYSN-INQLPVEIGQLTRLQLLDLSNC-------WWLEVIAPNVISKLSQLEELYM-GN 187
           +     + +LP  +  L  +QL++++            +  A        +++ +Y+  N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 188 GFSGWEKVEGGSNASLVELERLTEL 212
                         SL ++++L  L
Sbjct: 316 NLK-----TFPVETSLQKMKKLGML 335

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 11/96 (11%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI--------AAIGQLKKLEILSLAYSNINQLPVEI 149
           S  P+       L+   +     A            I     L  L +  ++I ++  +I
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

Query: 150 GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185
                + +LD+ +      I  + +    +     +
Sbjct: 586 --TPNISVLDIKDN-PNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 18/143 (12%), Positives = 38/143 (26%), Gaps = 34/143 (23%)

Query: 97  SSSLPSSLGRLI--NLQTLCLDWCEL--ADIAAIGQLKKLEILSLAYSNINQLPVEIGQL 152
             +      R    +L   C++      +   +     K   +    +NI  +   + +L
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRL 205

Query: 153 TRLQLLDLSNC----------WWLEVIA--------PNVISKLSQLEELYM-GNGFSGWE 193
           T+L+   + N           W  E                 L  L ++ +         
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-- 263

Query: 194 KVEGGSNASL-VELERLTELTTL 215
                    L   L+ L E+  +
Sbjct: 264 --------KLPTFLKALPEMQLI 278

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 21/177 (11%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNG-PMQVSDHFFEGMEGLKVL-----QFPGIGSSSL 100
            + L +      P+L    +   GN   +++     E +E L+ L               
Sbjct: 313 FENLCQISASNFPSLTHLSIK--GNTKRLELGTGCLENLENLRELDLSHDDIETSDCC-- 368

Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE--IGQLTRLQ 156
              L  L +LQ+L L + E   +   A  +  +LE+L LA++ +     +     L  L+
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
           +L+LS+   L++ +  +   L  L+ L + GN F            SL  L RL  L
Sbjct: 429 VLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPK---GNIQKTNSLQTLGRLEIL 481

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 53  PERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL---GRLIN 109
           P        Q        N  +         ++ L +  F  +    +  ++      ++
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 110 LQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
           ++++ L      +I          L+ L L  +++++LP  +  L+ L+ L LS     E
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFE 314

Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
            +     S    L  L + GN      ++  G   +L  L  L
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRL--ELGTGCLENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 8e-11
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
            +   ++  RLINL  L L  C++  I         +L+ L L  + +  +         
Sbjct: 46  PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
            L+ L       +  I    +     LE LY+  N  S    ++        +L+ L
Sbjct: 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISS---IKLPKGFPTEKLKVL 158

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 42  ISLPHRDIQELPERLQ-CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSS 98
           + L    + ELP  L     L+   L    N    +          L  L   G      
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKK--LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 99  SLPSSLGRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
                L  L NL+ L L   ++         +  L  L+ L+L+Y+    L  E   +  
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           +L+LLDL+        A +    L  L+ L + +
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 18/161 (11%)

Query: 62  QLFLLYTEGNGPMQVSDHFFEGMEGLKVL-------QFPGIGSSSLPSSLGRLINLQTLC 114
            L+L   E      +S   FEG+  + V         F  I      ++      LQ L 
Sbjct: 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS----SNTFHCFSGLQELD 284

Query: 115 LDWCELADI-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPN 172
           L    L+++ + +  L  L+ L L+ +    L  +       L  L +        +   
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 173 VISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERLTEL 212
            +  L  L EL +  +     +      N  L  L  L  L
Sbjct: 345 CLENLENLRELDLSHDDIETSDC----CNLQLRNLSHLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 9/119 (7%)

Query: 76  VSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA--AIGQ 128
            S+  F+G+  L+ L      FP   +    +SL  L  L+ L L +C+L+ I   A   
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKG-NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 129 LKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           LK +  + L+++ +    +E     +   L+L++   + +I P+++  LSQ   + +  
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 12/148 (8%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--QFPGIGSSSLPSSL 104
           +  + E        L+         G   +        + L+ L      I SS      
Sbjct: 93  LIFMAETALSGPKALKHLFFI--QTGISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPKG 149

Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSN--INQLPVEIGQLTRLQLLDL 160
                L+ L      +  +    +  L++   LSL  +   I  +          Q L+ 
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 161 S-NCWWLEVIAPNVISKLSQLEELYMGN 187
                 L +      S +  L      +
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFED 237

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 6e-13
 Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
              ++ +  LQ   +G  S+   +  L NL  +     +L DI  +  L KL  + +  +
Sbjct: 42  QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN 100

Query: 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGS 199
            I  +   +  LT L  L L N   +  I P  +  L+ L  L +  N  S         
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTIS--------- 147

Query: 200 NASLVELERLTELTTLEI 217
              +  L  LT L  L  
Sbjct: 148 --DISALSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 1e-12
 Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 24/183 (13%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRL 107
           I ++       NL    L    N    +SD     + GL  LQ    G+       L  L
Sbjct: 124 ITDIDPLKNLTNLNR--LELSSN---TISD--ISALSGLTSLQQLSFGNQVTDLKPLANL 176

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
             L+ L +   +++DI+ + +L  LE L    + I+ +   +G LT L  L L+     +
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGN---Q 232

Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEG---------GSN--ASLVELERLTELTTL 215
           +     ++ L+ L +L +  N  S    + G         G+N  +++  L  LT LT L
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292

Query: 216 EIE 218
           E+ 
Sbjct: 293 ELN 295

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 25/172 (14%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLGR 106
           + ++    +  NL+   L    N   Q+SD     +  L  L    +  + L    +L  
Sbjct: 189 VSDISVLAKLTNLES--LIATNN---QISD--ITPLGILTNLDELSLNGNQLKDIGTLAS 241

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           L NL  L L   +++++A +  L KL  L L  + I+ +   +  LT L  L+L+    L
Sbjct: 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNEN-QL 299

Query: 167 EVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
           E I+P  IS L  L  L +  N  S            +  +  LT+L  L  
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNNIS-----------DISPVSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 5e-12
 Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 23/183 (12%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
           I ++       NL    L   GN   Q+ D      +  L  L       S+L   L  L
Sbjct: 211 ISDITPLGILTNLDE--LSLNGN---QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGL 264

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
             L  L L   ++++I+ +  L  L  L L  + +  +   I  L  L  L L     + 
Sbjct: 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNN-IS 322

Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSN-----------ASLVELERLTELTTL 215
            I+P  +S L++L+ L+   N  S    +   +N           + L  L  LT +T L
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380

Query: 216 EIE 218
            + 
Sbjct: 381 GLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 8e-12
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 16/118 (13%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
             S   L  + TL  D   +  I  +  L  L  ++ + + +  +   +  LT+L  + +
Sbjct: 39  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 97

Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEI 217
           +N   +  I P  ++ L+ L  L +  N  +            +  L+ LT L  LE+
Sbjct: 98  NNN-QIADITP--LANLTNLTGLTLFNNQIT-----------DIDPLKNLTNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 13/141 (9%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL--PSSLGR 106
           I  L        L    L    N   Q+S+     + GL  L    +  + L   S +  
Sbjct: 255 ISNLAPLSGLTKLTE--LKLGAN---QISN--ISPLAGLTALTNLELNENQLEDISPISN 307

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           L NL  L L +  ++DI+ +  L KL+ L    + ++ +   +  LT +  L   +    
Sbjct: 308 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN--- 363

Query: 167 EVIAPNVISKLSQLEELYMGN 187
           ++     ++ L+++ +L + +
Sbjct: 364 QISDLTPLANLTRITQLGLND 384

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
           ++++       NL    L    N    +SD      +  L+ L F     S + S L  L
Sbjct: 299 LEDISPISNLKNLTY--LTLYFN---NISDISPVSSLTKLQRLFFYNNKVSDVSS-LANL 352

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
            N+  L     +++D+  +  L ++  L L        PV       +     +      
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT--GA 410

Query: 168 VIAPNVISKLSQLEELY 184
           +IAP  IS      E  
Sbjct: 411 LIAPATISDGGSYTEPD 427

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 7/141 (4%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGR 106
           I  +         +   +Y   N    + D        ++ L      I + +       
Sbjct: 111 ISRVSCSR-GQGKKN--IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
              L+ L L +  + D+       KL+ L L+ + +  +  E      +  + L N   L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL 226

Query: 167 EVIAPNVISKLSQLEELYMGN 187
            +I    +     LE   +  
Sbjct: 227 VLI-EKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 2/108 (1%)

Query: 78  DHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILS 136
                  + L+ L         +   +     L+TL L   +LA +         +  +S
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184
           L  + +  +   +     L+  DL    +      +  SK  +++ + 
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 23/175 (13%), Positives = 54/175 (30%), Gaps = 26/175 (14%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPSS 103
           I E+ +       +  +     +   Q      +    +K L         I      + 
Sbjct: 2   IHEIKQNGN----RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI----SAAD 53

Query: 104 LGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNC 163
           L     L+ L L    L +   +  L  L  L L     N +  E+     ++ L  +N 
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN---NYV-QELLVGPSIETLHAANN 109

Query: 164 WWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELE----RLTELT 213
             +  ++ +        + +Y+  N  +    ++ G  + +  L+     +  + 
Sbjct: 110 -NISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 19/122 (15%)

Query: 99  SLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRL 155
           ++          +   +    L     +       ++ L L+ + ++Q+    +   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 156 QLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL 215
           +LL+LS+   L       +  LS L  L + N            N  + EL     + TL
Sbjct: 61  ELLNLSSN-VLYETLD--LESLSTLRTLDLNN------------N-YVQELLVGPSIETL 104

Query: 216 EI 217
             
Sbjct: 105 HA 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
           + +         +  + L   +L  I  A+   + LE   L  +  +   +        +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 157 LLDLSN 162
           +  ++ 
Sbjct: 264 VQTVAK 269

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 26/177 (14%), Positives = 58/177 (32%), Gaps = 15/177 (8%)

Query: 49  IQELPERL-QCPNLQLFLLY-------TEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSS 98
           + +LP+ L   P LQ   +         +            +    +++       +   
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF 563

Query: 99  SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTR-LQL 157
              +SL +++ L  L     ++  + A G   KL  L L Y+ I ++P +    T  ++ 
Sbjct: 564 PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623

Query: 158 LDLSNCWWLEVIAPNV-ISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
           L  S+   L+ I        +  +  +    N     E      +    +    + +
Sbjct: 624 LGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTV 678

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 22/162 (13%), Positives = 49/162 (30%), Gaps = 18/162 (11%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--------QFP 93
           I    R+I    +  +  N     +    N   +     F     +  +          P
Sbjct: 656 IGSEGRNISCSMDDYKGINAST--VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713

Query: 94  GIGSSSLPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNINQLPVEIG 150
                    +      L T+ L + +L  +        L  L  + ++Y+  +  P +  
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

Query: 151 QLTRLQLLDLSNCWWLEV-----IAPNVISKLSQLEELYMGN 187
             ++L+   + +    E        P  I+    L +L +G+
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 25/118 (21%)

Query: 95  IGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNI----NQL---PV 147
           I        L     L    L    +     +  +KK   +SL  + I    N++     
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 148 EIGQLTRLQLLDLSNC------------------WWLEVIAPNVISKLSQLEELYMGN 187
            I +LT+LQ++  +N                              S L  L ++ + N
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 96  GSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNI-NQLPVEIGQLTR 154
             +   +      N       W +   +  +    ++  LSLA      ++P  IGQLT 
Sbjct: 290 SGTINNTIHSLNWNFNKELDMWGDQPGVD-LDNNGRVTGLSLAGFGAKGRVPDAIGQLTE 348

Query: 155 LQLLDLSN--------CWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL 206
           L++L             +  E + P++  +      ++    F  +++    S+     +
Sbjct: 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408

Query: 207 ERLTELTTLEIE 218
            R  E+  ++ +
Sbjct: 409 NRNPEMKPIKKD 420

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 8/117 (6%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLT 153
                ++  R   L +L + +  ++ +      +L  L++L+L ++ ++QL  +     T
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERL 209
            L  L L +   ++ I  N   K   L  L +  NG S     + G+   L  L+ L
Sbjct: 98  NLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSS---TKLGTQVQLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 10/159 (6%)

Query: 58  CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLINLQTLCLD 116
            P L++  L  + N   Q+SD  F     L  L            +   +  NL TL L 
Sbjct: 72  LPMLKVLNL--QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 117 WCELADI--AAIGQLKKLEILSLAYSNINQLPVE---IGQLTRLQLLDLSNCWWLEVIAP 171
              L+        QL+ L+ L L+ + I  L  E   I   + L+ L+LS+   ++  +P
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSP 188

Query: 172 NVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
                + +L  L++           +     +   +  L
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 10/166 (6%)

Query: 58  CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCL 115
             +  L +L    N   ++    F  +  L+VL      IG          L N+  + L
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437

Query: 116 DWCELADI--AAIGQLKKLEILSLAY---SNINQLPVEIGQLTRLQLLDLSNCWWLEVIA 170
            + +   +   +   +  L+ L L      N++  P     L  L +LDLSN   +  I 
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANIN 496

Query: 171 PNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTL 215
            +++  L +LE L +  N  +   K        +  L+ L+ L  L
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWK-HANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 36/179 (20%), Positives = 58/179 (32%), Gaps = 21/179 (11%)

Query: 49  IQELPERL--QCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG 105
           I+E           L  LFL   +    +            ++ L       S+  ++  
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 106 ---RLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLD 159
              +  NL  L L +  L  +   +   L +LE   L Y+NI  L    +  L  ++ L+
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 160 LSN--------CWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
           L             L  I       L  LE L M  N   G   ++      L+ L+ L
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG---IKSNMFTGLINLKYL 358

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 46/175 (26%)

Query: 58  CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPSSLGRLINLQT 112
             N+    +Y   N  +Q++ + F  +  L+ L         + SS  PS    L NL  
Sbjct: 429 LENIFE--IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--PSPFQPLRNLTI 484

Query: 113 LCLDWCELADI----------------------------------AAIGQLKKLEILSLA 138
           L L    +A+I                                    +  L  L IL+L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSG 191
            +  +++PVE    L  L+++DL     L  +  +V +    L+ L +  N  + 
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 36/182 (19%), Positives = 67/182 (36%), Gaps = 23/182 (12%)

Query: 43  SLPHRDIQELPERLQCPNLQ--LFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGI 95
            L    +  L   ++  NL+              ++ D  F+ ++ L+ L       PGI
Sbjct: 286 HLFSHSLHGLF-NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 96  GSSSLPSSLGRLINLQTLCLDWCELADIAAIGQ------LKKLEILSLAYSNINQLPVE- 148
                 +    LINL+ L L     +      +         L IL+L  + I+++  + 
Sbjct: 345 K----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 149 IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELE 207
              L  L++LDL      + +       L  + E+Y+  N +     +   S A +  L+
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ---LTRNSFALVPSLQ 457

Query: 208 RL 209
           RL
Sbjct: 458 RL 459

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 78/515 (15%), Positives = 158/515 (30%), Gaps = 91/515 (17%)

Query: 46  HRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSS 103
             ++ ++P+ L     +   L    N    V+   F  +E L++L+        +    +
Sbjct: 13  FCNLTQVPQVL--NTTER--LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 104 LGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVE---IGQLTRLQLL 158
              L NL+ L L   ++  +   A   L  L  L L +  ++   ++      L  L  L
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEK--VEGGSNASLVELERLTELTTL 215
           DLS      +       KL+ L+ +    N      +  +E     +L     L   +  
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF-SLAANSLY 187

Query: 216 EIEVPDAEILPPDFVSVELQRYKI---RIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSI 272
                D       F ++ L+   +            F   + KS+A  L++   I     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG- 246

Query: 273 LQENDGTKMLLQRTEDLWLETLEGV---QSVVHELDDG--EGFPRLKRLLVTDCS----- 322
              ++           L   ++  +      V  L+    E    LK L +         
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 323 ----------EILHIVG-SVRRVRCEVF---PLLEALSL-------------MFLTNLET 355
                     ++L++    +  +    F   P +  + L              FL  L+T
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 356 --ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP 413
             +  + L       ++  I + S  KL  L   ++  NL+ L + ++E+ D L  ++  
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFL-SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR- 424

Query: 414 DMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHL 473
                                        +L  + + + +R          +    L+ L
Sbjct: 425 ---------------------------VPHLQILIL-NQNRFSSCSGDQTPSENPSLEQL 456

Query: 474 EIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLH 508
            +     ++    T      D F+    L  L L+
Sbjct: 457 FLGENM-LQLAWETELCW--DVFEGLSHLQVLYLN 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 29/120 (24%), Positives = 36/120 (30%), Gaps = 10/120 (8%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLT 153
                 S      LQ L L  CE+  I   A   L  L  L L  + I  L +     L+
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            LQ L       L  +    I  L  L+EL +  N                  L  L  L
Sbjct: 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQS-----FKLPEYFSNLTNLEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 11/160 (6%)

Query: 58  CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117
            P+L+   L   G            G   LK L     G  ++ S+   L  L+ L    
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 118 CELADI---AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNV 173
             L  +   +    L+ L  L +++++           L+ L++L ++   + E   P++
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 174 ISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            ++L  L  L +              S  +   L  L  L
Sbjct: 466 FTELRNLTFLDLSQCQLEQL------SPTAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 81  FEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILS 136
           F G+E L+ L F    +   S  S    L NL  L +               L  LE+L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 137 LAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWE 193
           +A ++  +  LP    +L  L  LDLS C  LE ++P   + LS L+ L M  N F    
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFS-- 508

Query: 194 KVEGGSNASLVELERL 209
            ++      L  L+ L
Sbjct: 509 -LDTFPYKCLNSLQVL 523

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 17/169 (10%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           I+ + +       Q   L        Q      + ++ L      G        S   L 
Sbjct: 294 IERVKDFSYNFGWQH--LELVNCKFGQFPTLKLKSLKRLTFTSNKGGN----AFSEVDLP 347

Query: 109 NLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164
           +L+ L L    L+       +      L+ L L+++ +  +      L +L+ LD  +  
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407

Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
             ++   +V   L  L  L +               N     L  L  L
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVA------FNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 13/173 (7%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSL 104
           IQ L         +LQ  +          + +     ++ LK L      I S  LP   
Sbjct: 88  IQSLALGAFSGLSSLQKLVAV--ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKLEI----LSLAYSNINQLPVEIGQLTRLQLL 158
             L NL+ L L   ++  I    +  L ++ +    L L+ + +N +     +  RL  L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
            L N +    +    I  L+ LE   +    F     +E    ++L  L  LT
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 8/121 (6%)

Query: 78  DHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLE 133
           +  F G+  L+VL+  G     + LP     L NL  L L  C+L  +   A   L  L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYM-GNGFS 190
           +L+++++N   L       L  LQ+LD S    +       +    S L  L +  N F+
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFA 556

Query: 191 G 191
            
Sbjct: 557 C 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 29/184 (15%), Positives = 49/184 (26%), Gaps = 37/184 (20%)

Query: 59  PNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQF-------PGIGSSSLPSSLGRLINL 110
             L+   L+  E      +       +EGL  L                +      L N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 111 QTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE--------------------IG 150
            +  L    +  +         + L L      Q P                        
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 151 QLTRLQLLDLS-NCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELER 208
            L  L+ LDLS N    +          + L+ L +  NG           +++ + LE+
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-------TMSSNFLGLEQ 397

Query: 209 LTEL 212
           L  L
Sbjct: 398 LEHL 401

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.0 bits (164), Expect = 6e-12
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 4/150 (2%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           ++            +  P+L+   L   G            G   LK L     G  ++ 
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 102 SSLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
           S+   L  L+ L      L  ++       L+ L  L +++++       I   L+ L++
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L ++   + E   P++ ++L  L  L +  
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
             S      LQ L L  CE+  I   A   L  L  L L  + I  L +     L+ LQ 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L       L  +    I  L  L+EL + +
Sbjct: 105 LVAVET-NLASLENFPIGHLKTLKELNVAH 133

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
           SL    I+ + +       Q   L        Q        ++ LK L F      +  S
Sbjct: 288 SLVSVTIERVKDFSYNFGWQH--LELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFS 342

Query: 103 SLGRLINLQTLCLDWCELADIA----AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
            +  L +L+ L L    L+       +      L+ L L+++ +  +      L +L+ L
Sbjct: 343 EVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           D  +    ++   +V   L  L  L + +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 13/181 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL--QFPGIGSSSLPSSLGR 106
           IQ L          L  L         + +     ++ LK L      I S  LP     
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 107 LINLQTLCLDWCELADIA--AIGQLKKLEI----LSLAYSNINQLPVEIGQLTRLQLLDL 160
           L NL+ L L   ++  I    +  L ++ +    L L+ + +N +     +  RL  L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP 220
            N +    +    I  L+ LE   +  G     +     N    +   L  L  L IE  
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLG-----EFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 221 D 221
            
Sbjct: 263 R 263

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 80  FFEGMEGLKVLQFPGIGSSSL----PSSLGRLINLQTLCLDWCELADI---AAIGQLKKL 132
            F  +  L  L    I  +            L +L+ L +      +        +L+ L
Sbjct: 416 VFLSLRNLIYLD---ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 133 EILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
             L L+   + QL       L+ LQ+L++++   L+ +   +  +L+ L+++++  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 39  PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG---- 94
             ++++    IQ L   L+   L L     EGN          EG+  L + +F      
Sbjct: 211 FDSLNVMKTCIQGLA-GLEVHRLVLGEFRNEGNLEK-FDKSALEGLCNLTIEEFRLAYLD 268

Query: 95  IGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTR 154
                +      L N+ +  L    +  +         + L L      Q P    +L  
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP--TLKLKS 326

Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
           L+ L  ++       +      L  LE L +  NG S        S+     L+ L
Sbjct: 327 LKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKG-CCSQSDFGTTSLKYL 378

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 6e-12
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 25/180 (13%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
           I   + DI+ +      PN+    L   GN   +++D      ++ L  L         L
Sbjct: 48  IIANNSDIKSVQGIQYLPNVTKLFLN--GN---KLTDIKPLTNLKNLGWLFLDENKIKDL 102

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
            SSL  L  L++L L+   ++DI  +  L +LE L L  + I  + V + +LT+L  L L
Sbjct: 103 -SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 160

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEIE 218
            +   +  I P  ++ L++L+ LY+              N  + L  L  L  L  LE+ 
Sbjct: 161 EDN-QISDIVP--LAGLTKLQNLYLSK------------NHISDLRALAGLKNLDVLELF 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 18/159 (11%)

Query: 73  PMQVSDHF-FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKK 131
              +   F  +               +    +   L ++  +  +  ++  +  I  L  
Sbjct: 8   STPIKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGIQYLPN 66

Query: 132 LEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN---- 187
           +  L L  + +  +   +  L  L  L L     ++ ++   +  L +L+ L + +    
Sbjct: 67  VTKLFLNGNKLTDIK-PLTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLSLEHNGIS 122

Query: 188 ---GFSGWEKVEG---GSN--ASLVELERLTELTTLEIE 218
              G     ++E    G+N    +  L RLT+L TL +E
Sbjct: 123 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLE 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 47  RDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLG 105
            DI  L      P L+   LY   N   +++D      +  L  L       S +   L 
Sbjct: 122 SDINGLV---HLPQLES--LYLGNN---KITDITVLSRLTKLDTLSLEDNQISDI-VPLA 172

Query: 106 RLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNI-NQLPVEIGQLTRLQLLDLSNCW 164
            L  LQ L L    ++D+ A+  LK L++L L      N+       L     +  ++  
Sbjct: 173 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD-- 230

Query: 165 WLEVIAPNVISKLSQLEEL 183
              ++ P +IS     E+ 
Sbjct: 231 -GSLVTPEIISDDGDYEKP 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 13/208 (6%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGR 106
           I  +         +   +Y   N    + D        ++ L      I + +       
Sbjct: 111 ISRVSCSR-GQGKKN--IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
              L+ L L +  + D+       KL+ L L+ + +  +  E      +  + L N   L
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KL 226

Query: 167 EVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEIL 225
            +I    +     LE   + GNGF       G       + +R+  +    ++    +  
Sbjct: 227 VLI-EKALRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 226 PPDFVSVELQRYKIRIGDGPEDEFDPLL 253
               V            D P    D L+
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLI 308

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 7/145 (4%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
            +    +++    L+     +  L   GN   Q+S         L++L            
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL- 74

Query: 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
            L  L  L+TL L+   + +   +     +E L  A +NI+++    GQ    + + L+N
Sbjct: 75  DLESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLAN 129

Query: 163 CWWLEVIAPNVISKLSQLEELYMGN 187
              + ++        S+++ L +  
Sbjct: 130 N-KITMLRDLDEGCRSRVQYLDLKL 153

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 36/240 (15%)

Query: 55  RLQCPNLQLF------LLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRL 107
              C  L+ F      +         +++    E      +  +       LP+    RL
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLE 167
           I L+                  K+  +LS   S   +L  E     R + +D        
Sbjct: 308 IALK-----------------RKEHALLSGQGSETERLECERENQARQREIDALKE-QYR 349

Query: 168 VIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE--RLTELTTLEIEVPDAEIL 225
            +   V  +      L         ++       +  EL+      +  +E++    E  
Sbjct: 350 TVIDQVTLRKQAKITLEQKK--KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 226 PPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQR 285
           P   +   ++RY        E   +   V++ A R   +   K+  + +EN   K L   
Sbjct: 408 PLQLLRAIVKRY-------EEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGE 460

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.6 bits (158), Expect = 1e-11
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 8/140 (5%)

Query: 75  QVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIG---QLKK 131
                   G   LK L     G  ++ S+   L  L+ L      L  ++       L+ 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 132 LEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGF 189
           L  L +++++       I   L+ L++L ++   + E   P++ ++L  L  L +     
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 190 SGWEKVEGGSNASLVELERL 209
               ++   +  SL  L+ L
Sbjct: 188 E---QLSPTAFNSLSSLQVL 204

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 8/132 (6%)

Query: 62  QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCE 119
            L  L    NG + +S +F  G+E L+ L F    +   S  S    L NL  L +    
Sbjct: 79  SLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 120 LADI--AAIGQLKKLEILSLAYSN-INQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVIS 175
                      L  LE+L +A ++       +I  +L  L  LDLS C  LE ++P   +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN 196

Query: 176 KLSQLEELYMGN 187
            LS L+ L M +
Sbjct: 197 SLSSLQVLNMSH 208

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQ----LKKLEILSLAYSNINQLPVEIGQLTRLQ 156
                +L  L  L L    L+      Q       L+ L L+++ +  +      L +L+
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            LD  +    ++   +V   L  L  L + +
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 4/142 (2%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SLGR 106
           +  +P        +L  L+   N    +  + F  +  L+ L    +   S +   +   
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWW 165
           L NL+ L L  C L +I  +  L KL+ L L+ ++++ +       L  LQ L +     
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-Q 242

Query: 166 LEVIAPNVISKLSQLEELYMGN 187
           ++VI  N    L  L E+ + +
Sbjct: 243 IQVIERNAFDNLQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 19/185 (10%)

Query: 38  DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS 97
               +    ++++E+P+ +   N +L  L    N    +  + F+ +  L++LQ      
Sbjct: 44  QFSKVICVRKNLREVPDGIS-TNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 98  SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
            ++   +   L NL TL L    L  I   A   L KL+ L L  + I  +P     ++ 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            L+ LDL     L  I+      LS L  L +                  +  L  L +L
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-----------EIPNLTPLIKL 209

Query: 213 TTLEI 217
             L++
Sbjct: 210 DELDL 214

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 25/180 (13%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL 100
           I   + DI+ +      PN+    L+  GN   +++D      ++ L  L         L
Sbjct: 51  IIANNSDIKSVQGIQYLPNVTK--LFLNGN---KLTDIKPLANLKNLGWLFLDENKVKDL 105

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
            SSL  L  L++L L+   ++DI  +  L +LE L L  + I  + V + +LT+L  L L
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 163

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEIE 218
            +   +  I P  ++ L++L+ LY+              N  + L  L  L  L  LE+ 
Sbjct: 164 EDN-QISDIVP--LAGLTKLQNLYLSK------------NHISDLRALAGLKNLDVLELF 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 18/118 (15%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
            S           L    + D     +L  ++ +    S+I  +   I  L  +  L L+
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 76

Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEI 217
               L  I P  ++ L  L  L++              N    L  L+ L +L +L +
Sbjct: 77  GN-KLTDIKP--LANLKNLGWLFLDE------------NKVKDLSSLKDLKKLKSLSL 119

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 27/194 (13%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS---S 98
           + L    + ++       NL    L+ + N   +V D     ++ LK L+   +     S
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGW--LFLDEN---KVKD--LSSLKDLKKLKSLSLEHNGIS 125

Query: 99  SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
            + + L  L  L++L L   ++ DI  + +L KL+ LSL  + I+ +   +  LT+LQ L
Sbjct: 126 DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNL 183

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL-EI 217
            LS    +  +    ++ L  L+ L + +                  +   + L     +
Sbjct: 184 YLSKNH-ISDLRA--LAGLKNLDVLELFS-----------QECLNKPINHQSNLVVPNTV 229

Query: 218 EVPDAEILPPDFVS 231
           +  D  ++ P+ +S
Sbjct: 230 KNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRL 107
           I ++   +  P L+   LY   N   +++D      +  L  L       S +   L  L
Sbjct: 124 ISDINGLVHLPQLES--LYLGNN---KITDITVLSRLTKLDTLSLEDNQISDI-VPLAGL 177

Query: 108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWL 166
             LQ L L    ++D+ A+  LK L++L L        P+     L     +  ++    
Sbjct: 178 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--- 234

Query: 167 EVIAPNVISKLSQLEEL 183
            ++ P +IS     E+ 
Sbjct: 235 SLVTPEIISDDGDYEKP 251

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 73  PMQVSDHF-FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKK 131
           P  ++  F    +     +       +    +   L  + TL      +  I  +  L  
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEGVQYLNN 64

Query: 132 LEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG-NGFS 190
           L  L L  + I  L   +  LT++  L+LS    L+ ++   I+ L  ++ L +     +
Sbjct: 65  LIGLELKDNQITDLA-PLKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQIT 120

Query: 191 GWEKVEG---------GSNA--SLVELERLTELTTLEI 217
               + G           N   ++  L  LT L  L I
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 158

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
           S L  L NLQ L +   +++D+  +  L KL  L    + I+ +   +  L  L  + L 
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLK 203

Query: 162 NCWWLEVIAPNVISKLSQLEELYMGN 187
           N   +  ++P  ++  S L  + + N
Sbjct: 204 NN-QISDVSP--LANTSNLFIVTLTN 226

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SLGRLINLQTLCLD 116
             L+   L+   N    +  + F  +  L  L    +     +   +   L NL+ L L 
Sbjct: 147 SKLRE--LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVIS 175
            C + D+  +  L  LE L ++ ++  ++       L+ L+ L + N   + +I  N   
Sbjct: 205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFD 263

Query: 176 KLSQLEELYMGN 187
            L+ L EL + +
Sbjct: 264 GLASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 41/185 (22%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 38  DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS 97
               +    R + E+P+ +   N +   L    N    +    F  +  L+VLQ      
Sbjct: 55  QFSKVVCTRRGLSEVPQGIP-SNTRY--LNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 98  SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
             +   +   L +L TL L    L  I   A   L KL  L L  + I  +P     ++ 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            L  LDL     LE I+      L  L+ L +                  +  L  L  L
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-----------DMPNLTPLVGL 220

Query: 213 TTLEI 217
             LE+
Sbjct: 221 EELEM 225

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 12/168 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE--GMEGLKVLQFPGIGSSSLPSSLGR 106
                +++  P+L    L    N         +   G   L+ L     G+  + ++   
Sbjct: 340 GSISFKKVALPSLSYLDLS--RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 107 LINLQTLCLDWCELADIA---AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSN 162
           L  LQ L      L  +    A   L+KL  L ++Y+N       I   LT L  L ++ 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 163 CWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
             + +    NV +  + L  L +          +  G   +L  L+ L
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQ---ISWGVFDTLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 39/166 (23%), Positives = 59/166 (35%), Gaps = 17/166 (10%)

Query: 54  ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQ 111
             L   +L+   L    NG   +    F G+E L+ L F    +   +  S+   L  L 
Sbjct: 371 SDLGTNSLRHLDL--SFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 112 TLCLDWCELADI--AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLE 167
            L + +             L  L  L +A ++     L       T L  LDLS C  LE
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LE 486

Query: 168 VIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
            I+  V   L +L+ L M  N            ++   +L  L+ L
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFL------DSSHYNQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 13/176 (7%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSL 104
           IQ           +L+  +          +       +  LK L      I S  LP+  
Sbjct: 92  IQSFSPGSFSGLTSLENLVAV--ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 105 GRLINLQTLCLDWCELADI--AAIGQLKKL----EILSLAYSNINQLPVEIGQLTRLQLL 158
             L NL  + L +  +  I    +  L++       L ++ + I+ +  +  Q  +L  L
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELT 213
            L   +    I    +  L+ L    +    F     +E    + +  L  +T   
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTR 154
           S +P  +    + + + L +  L  +   +     +L+ L L+   I  +  +    L  
Sbjct: 24  SKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
           L  L L+    ++  +P   S L+ LE L       +    +E      L+ L++L
Sbjct: 82  LSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLAS---LESFPIGQLITLKKL 133

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 17/169 (10%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           I+ L +  +    Q   L        Q+       +  LK L       S     +  L 
Sbjct: 297 IKYLEDVPKHFKWQS--LSIIRC---QLKQFPTLDLPFLKSLTLTMNKGSISFKKVA-LP 350

Query: 109 NLQTLCLDWCELADIAAI----GQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164
           +L  L L    L+              L  L L+++    +      L  LQ LD  +  
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410

Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTEL 212
              V   +    L +L  L +               +   + L  L  L
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKID------FDGIFLGLTSLNTL 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 6/131 (4%)

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
            ++ +                 F  +  +  +   G+    L   + +    Q+L +  C
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRC 317

Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS--K 176
           +L     +  L  L+ L+L  +  +    ++  L  L  LDLS    L        S   
Sbjct: 318 QLKQFPTLD-LPFLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRN-ALSFSGCCSYSDLG 374

Query: 177 LSQLEELYMGN 187
            + L  L +  
Sbjct: 375 TNSLRHLDLSF 385

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 8/115 (6%)

Query: 76  VSDHFFEGMEGLKVLQFPGIG---SSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKL 132
                 EG+  + + +F        S        L N+  + L    +  +  + +  K 
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

Query: 133 EILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           + LS+    + Q P     L  L+ L L+               L  L  L +  
Sbjct: 310 QSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSR 359

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 26/144 (18%), Positives = 44/144 (30%), Gaps = 30/144 (20%)

Query: 49  IQELPERLQCPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPSSLG 105
           ++ + E     +L+ L  L           D  F G+  L  L+  G     ++L +   
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 106 RLINLQTLCLDWCELADI--------------------------AAIGQLKKLEILSLAY 139
              NL  L L  C+L  I                          +   QL  L  L  ++
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 140 SNINQLPVEI-GQLTRLQLLDLSN 162
           + I      +      L   +L+N
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTN 554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPS- 102
           +  LP  +     +L  L    N   ++ D  F+    L+ L     +   +  S +PS 
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188

Query: 103 -----------SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQ 151
                      +L   I ++ L      +  +       +L IL L ++N+      +  
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAW-LLN 246

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
              L  +DLS    LE I  +   K+ +LE LY+ N
Sbjct: 247 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 281

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 26/190 (13%), Positives = 65/190 (34%), Gaps = 17/190 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           I +  +D+    E +   N ++  +  + +   ++     +    +++L    +    + 
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKI--VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
           + +      +Q L + +  +  +       +  L +L L  ++++ LP  I     +L  
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN---------GFSGWEKVEGGSNASLVELER 208
           L +SN   LE I  +     + L+ L + +                     N  L  L  
Sbjct: 146 LSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLSTLAI 203

Query: 209 LTELTTLEIE 218
              +  L+  
Sbjct: 204 PIAVEELDAS 213

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
            ++ +  +  L        + +  L    N    V          L +L+      +   
Sbjct: 191 ANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA 242

Query: 102 SSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
             L     L  + L + EL  I      ++++LE L ++ + +  L +    +  L++LD
Sbjct: 243 W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301

Query: 160 LSNCWWLEVIAPNVISKLSQLEELYMGN 187
           LS+   L  +      +  +LE LY+ +
Sbjct: 302 LSHNH-LLHV-ERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 101 PSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
                ++  L+ L +    L  +      +  L++L L+++++  +     Q  RL+ L 
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

Query: 160 LSNCWWLEVIAPNVISKLSQL 180
           L +   +  +  +    L  L
Sbjct: 325 LDHN-SIVTLKLSTHHTLKNL 344

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 12/174 (6%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP- 101
               R    +P  L    ++   L    N    +          L+VL       +++  
Sbjct: 11  DGRSRSFTSIPSGL-TAAMKSLDLS--FNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 102 SSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQL 157
            +   L +L+ L L    L+ +  +  G L  L+ L+L  +    L V      LT LQ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
           L + N      I     + L+ L EL +           +  S  S+ ++  LT
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR---NYQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 12/154 (7%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSS 99
           + +P   +      +     ++  +  E +    V   F + ++ L+ L      +    
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 100 LPSS--LGRLINLQTLCLDWCELADIAAIG----QLKKLEILSLAYSNINQLPVEIGQLT 153
           L +S   G   +LQTL L    L  +   G     LK L  L ++ +  + +P       
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           +++ L+LS+   + V+   +      LE L + N
Sbjct: 411 KMRFLNLSST-GIRVVKTCI---PQTLEVLDVSN 440

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 57  QCPNLQLFLLYTEGNGP--MQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114
             P+LQ  +L    N    MQ +      ++ L  L         +P S      ++ L 
Sbjct: 359 AWPSLQTLVLS--QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416

Query: 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVI 174
           L    +  +      + LE+L ++ +N++   +    L RLQ L +S    L+ +    +
Sbjct: 417 LSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLF---LPRLQELYISRN-KLKTLPDASL 471

Query: 175 SKLSQLEELYMGN 187
                L  + +  
Sbjct: 472 --FPVLLVMKISR 482

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQ 156
            S    L     LQ L +   +L  +        L ++ ++ + +  +P  I  +LT LQ
Sbjct: 444 DSFSLFLP---RLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 157 LLDLSN 162
            + L  
Sbjct: 501 KIWLHT 506

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
            ++L     L  L LD  EL  +   G L  L  L L+++ +  LP+    L  L +LD+
Sbjct: 48  LATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMGN 187
           S    L  +    +  L +L+ELY+  
Sbjct: 108 SFN-RLTSLPLGALRGLGELQELYLKG 133

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           +         P  +L  L  +     ++       +  L  L        SLP     L 
Sbjct: 43  LYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLP 100

Query: 109 NLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWW 165
            L  L + +  L  +   A+  L +L+ L L  + +  LP  +     +L+ L L+N   
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-N 159

Query: 166 LEVIAPNVISKLSQLEELYMGN 187
           L  +   +++ L  L+ L +  
Sbjct: 160 LTELPAGLLNGLENLDTLLLQE 181

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELA-DI-AAIGQLKKLEILSLAYSNIN-QLPVEIGQLT 153
              +P ++ +L  L  L +    ++  I   + Q+K L  L  +Y+ ++  LP  I  L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 154 RLQLLDLSN 162
            L  +    
Sbjct: 150 NLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 100 LPSSLGRLINLQTLCLDWCEL---ADI-AAIGQLKKLEILSLAYSNINQL----PVEIGQ 151
           L  +  +   +  L L    L     I +++  L  L  L +    IN L    P  I +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAK 99

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSG 191
           LT+L  L +++      I P+ +S++  L  L    N  SG
Sbjct: 100 LTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALSG 139

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 5e-09
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELA-DIAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTR 154
                   G   N Q + L    LA D+  +G  K L  L L  + I   LP  + QL  
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 155 LQLLDLSN 162
           L  L++S 
Sbjct: 270 LHSLNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 44/128 (34%)

Query: 99  SLPSSLGRLINLQTLCLDWCELA-DI-AAIGQLKKL-EILSLAYSNI------------- 142
           +LP S+  L NL  +  D   ++  I  + G   KL   ++++ + +             
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199

Query: 143 -------NQL----PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS-------KLSQLEELY 184
                  N L     V  G     Q + L+          N ++           L  L 
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAK---------NSLAFDLGKVGLSKNLNGLD 250

Query: 185 M-GNGFSG 191
           +  N   G
Sbjct: 251 LRNNRIYG 258

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 6e-10
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 12/119 (10%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
                   +++ L L   +L  +  + QL  +  L L+++ +  LP  +  L  L++L  
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493

Query: 161 SNCWWLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERLTELTTLEIE 218
           S+   LE +    ++ L +L+EL +  N       ++         L     L  L ++
Sbjct: 494 SDN-ALENVDG--VANLPRLQELLLCNNRLQQSAAIQ--------PLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRL 155
            +LP +L  L  L+ L      L ++  +  L +L+ L L  + + Q      +    RL
Sbjct: 476 RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 156 QLLDLSN 162
            LL+L  
Sbjct: 536 VLLNLQG 542

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 26/190 (13%), Positives = 63/190 (33%), Gaps = 17/190 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           I +  +D+    E +   N ++       +   ++     +    +++L    +    + 
Sbjct: 34  IDMQTQDVYFGFEDITLNNQKIVTFK--NSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
           + +      +Q L + +  +  +       +  L +L L  ++++ LP  I     +L  
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN---------GFSGWEKVEGGSNASLVELER 208
           L +SN   LE I  +     + L+ L + +                     N  L  L  
Sbjct: 152 LSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLSTLAI 209

Query: 209 LTELTTLEIE 218
              +  L+  
Sbjct: 210 PIAVEELDAS 219

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 7e-10
 Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVL-----QFPGIGSSSLPS- 102
           +  LP  +     +L  L    N   ++ D  F+    L+ L     +   +  S +PS 
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194

Query: 103 -----------SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQ 151
                      +L   I ++ L      +  +       +L IL L ++N+      +  
Sbjct: 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAW-LLN 252

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
              L  +DLS    LE I  +   K+ +LE LY+ N
Sbjct: 253 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN 287

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
            ++ +  +  L        + +  L    N    V          L +L+      +   
Sbjct: 197 ANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA 248

Query: 102 SSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
             L     L  + L + EL  I      ++++LE L ++ + +  L +    +  L++LD
Sbjct: 249 W-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307

Query: 160 LSNCWWLEVIAPNVISKLSQLEELYMGN 187
           LS+   L  +      +  +LE LY+ +
Sbjct: 308 LSHNH-LLHV-ERNQPQFDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 101 PSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
                ++  L+ L +    L  +      +  L++L L+++++  +     Q  RL+ L 
Sbjct: 271 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 330

Query: 160 LSNCWWLEVIAPNVISKLSQL 180
           L +   +  +  +    L  L
Sbjct: 331 LDHN-SIVTLKLSTHHTLKNL 350

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 90  LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEI 149
              P I    + ++L  L   + L L    +  I+++  ++ L ILSL  + I ++    
Sbjct: 32  GMIPPI--EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLD 89

Query: 150 GQLTRLQLLDLSNCWWLEVIAPNVISKLS------QLEELYMG-NGFSGWEKVEGGSNAS 202
                L+ L +S          N I+ LS       L  LYM  N  + W +++      
Sbjct: 90  AVADTLEELWISY---------NQIASLSGIEKLVNLRVLYMSNNKITNWGEID-----K 135

Query: 203 LVELERLTELT 213
           L  L++L +L 
Sbjct: 136 LAALDKLEDLL 146

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 13/177 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRL 107
           ++ +P  +      L  L    N  + + D+ F+ +  LK L+        +   +   L
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 108 INLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCW 164
            +L+ L L+ C L  I   A+  L  L +L L + NIN +      +L RL++L++S+  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 165 WLEVIAPNVISKLSQLEELYMG-NGFSGWEKVEGGSNASLVELERLT----ELTTLE 216
           +L+ + PN +  L+ L  L +     +    V   +   LV L  L      ++T+E
Sbjct: 212 YLDTMTPNCLYGLN-LTSLSITHCNLT---AVPYLAVRHLVYLRFLNLSYNPISTIE 264

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 39/177 (22%), Positives = 69/177 (38%), Gaps = 13/177 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRL 107
           +  +  R       L  L  E      +       + GL VL+   +  +++   S  RL
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 108 INLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW 164
             L+ L +      D           L  LS+ + N+  +P   +  L  L+ L+LS   
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 165 WLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT----ELTTLE 216
            +  I  +++ +L +L+E+ + G   +    VE  +   L  L  L     +LTTLE
Sbjct: 260 -ISTIEGSMLHELLRLQEIQLVGGQLA---VVEPYAFRGLNYLRVLNVSGNQLTTLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
                   +L+ L L+   ++ +   A   L  L  L L  + +  +P+ +   L+ L  
Sbjct: 49  QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLT 210
           LD+S    + ++   +   L  L+ L +  N       +   + + L  LE+LT
Sbjct: 109 LDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLV---YISHRAFSGLNSLEQLT 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 5/127 (3%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
            + H    +         L L  L         V       +  L+ L       S++  
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

Query: 103 -SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLL 158
             L  L+ LQ + L   +LA +   A   L  L +L+++ + +  L   +   +  L+ L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 159 DLS-NCW 164
            L  N  
Sbjct: 326 ILDSNPL 332

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 6/150 (4%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEGLKVLQFPGIGSSSLP 101
            L    +  +          L  L    N  ++ V    F G+  L  L     G   L 
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 102 S-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQL 157
                 L  LQ L L    L  +       L  L  L L  + I+ +P      L  L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           L L     +  + P+    L +L  LY+  
Sbjct: 182 LLLHQNR-VAHVHPHAFRDLGRLMTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTR 154
            ++P  +      Q + L    ++ +  A+    + L IL L  + + ++       L  
Sbjct: 24  QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERL 209
           L+ LDLS+   L  + P     L +L  L++   G     ++  G    L  L+ L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYL 134

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 98  SSLPS-SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLT 153
             L S S      LQ L L  CE+  I   A   L  L  L L  + I  L +     L+
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100

Query: 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            LQ L       L  +    I  L  L+EL + +
Sbjct: 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAH 133

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 10/122 (8%)

Query: 98  SSLPS--SLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQL 152
           S L +  +  RL NL +L L    L  I+  A   +  L  L L+ ++++ L   +   L
Sbjct: 52  SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111

Query: 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTE 211
             L++L L N   + V+  N    ++QL++LY+  N  S   +          +L +L  
Sbjct: 112 QALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQIS---RFPVELIKDGNKLPKLML 167

Query: 212 LT 213
           L 
Sbjct: 168 LD 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 13/146 (8%)

Query: 49  IQELPERLQCPNL-QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG--IGSSSLPS-SL 104
           +  L        L  L  L    N    +S   F  +  L+ L      +   +L     
Sbjct: 51  LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL--HTLDEFLF 108

Query: 105 GRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI----GQLTRLQLL 158
             L  L+ L L    +  +   A   + +L+ L L+ + I++ PVE+     +L +L LL
Sbjct: 109 SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL 168

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELY 184
           DLS+   L+ +    + KL    +  
Sbjct: 169 DLSSN-KLKKLPLTDLQKLPAWVKNG 193

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 19/119 (15%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
           + +    NL+ L L   +++D++ +  L KLE LS+  + +  L         L  L L 
Sbjct: 57  AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLD 114

Query: 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNA--SLVELERLTELTTLEIE 218
           N    E+   + +  L  LE L + N            N   S+V L  L++L  L++ 
Sbjct: 115 NN---ELRDTDSLIHLKNLEILSIRN------------NKLKSIVMLGFLSKLEVLDLH 158

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 60  NLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC 118
           +  L  L+ + N   ++ D      ++ L++L        S+   LG L  L+ L L   
Sbjct: 105 SACLSRLFLDNN---ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN 160

Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178
           E+ +   + +LKK+  + L        PV+      L + +         I+P  IS   
Sbjct: 161 EITNTGGLTRLKKVNWIDLTGQKCVNEPVKY--QPELYITNTVKDPDGRWISPYYISNGG 218

Query: 179 QLEELY 184
              +  
Sbjct: 219 SYVDGC 224

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 18/101 (17%)

Query: 119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS 178
            +  +     L      +L   ++  L V   +L+ +Q  +  N   ++ +A   +   +
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSLAG--MQFFT 63

Query: 179 QLEELYMGNGFSGWEKVEGGSN--ASLVELERLTELTTLEI 217
            L+EL++ +            N  + L  L+ LT+L  L +
Sbjct: 64  NLKELHLSH------------NQISDLSPLKDLTKLEELSV 92

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 17/144 (11%)

Query: 44  LPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS 103
           L +  +  LPE    P+L+   L    N   ++ +        LK L        +L   
Sbjct: 78  LNNLGLSSLPELP--PHLES--LVASCNSLTELPELPQS----LKSLLVDNNNLKALSDL 129

Query: 104 LGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNC 163
                 L+ L +   +L  +  +     L+I+ +  +++ +LP     L  +   +    
Sbjct: 130 PP---LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ-- 184

Query: 164 WWLEVIAPNVISKLSQLEELYMGN 187
             LE +    +  L  L  +Y  N
Sbjct: 185 --LEELPE--LQNLPFLTAIYADN 204

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
             LP       +L+++      L ++  +  L  L  +    + +  LP     L  L +
Sbjct: 208 KKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264

Query: 158 LDLSNCWWLEVIAPNVISKLSQLEELY 184
            D      L  + P +   L+ L+   
Sbjct: 265 RDNY----LTDL-PELPQSLTFLDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 30/149 (20%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI 108
           ++ELPE    P L    +Y + N    +     +    L+ L       + LP     L 
Sbjct: 227 LEELPELQNLPFLTT--IYADNN---LLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLT 280

Query: 109 -----------------NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQ 151
                            NL  L     E+  +        LE L+++ + + +LP    +
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLIELPALPPR 338

Query: 152 LTRLQLLDLSNCWWLEVIAPNVISKLSQL 180
           L R   L  S    L  + P +   L QL
Sbjct: 339 LER---LIASFN-HLAEV-PELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 27/142 (19%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI--AAIGQL-------------KKLEILSLAYSNI 142
           + +P     + +       W E         G+              ++   L L    +
Sbjct: 24  TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83

Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGW----EKVEG 197
           + LP     L     L  S    L  + P +   L  L          S      E +  
Sbjct: 84  SSLPELPPHLES---LVASCN-SLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGV 138

Query: 198 GSN--ASLVELERLTELTTLEI 217
            +N    L EL+  + L  +++
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDV 160

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 9/151 (5%)

Query: 66  LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELADI- 123
           L    N    +S+   +    L+ L     G +++   S   L +L+ L L +  L+++ 
Sbjct: 57  LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116

Query: 124 -AAIGQLKKLEILSLAYSNINQLPVEI--GQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180
            +    L  L  L+L  +    L        LT+LQ+L + N      I     + L+ L
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176

Query: 181 EELYM-GNGFSGWEKVEGGSNASLVELERLT 210
           EEL +  +        E  S  S+  +  L 
Sbjct: 177 EELEIDASDLQ---SYEPKSLKSIQNVSHLI 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 11/124 (8%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ 156
            ++   S  +L  L +L      + D+  I +L  L  L    +NI  L   + Q T L 
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLT 88

Query: 157 LLDLSNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELE-RLTELTT 214
            L   +   L  +    ++ L++L  L    N  +   K++   N  L  L      LT 
Sbjct: 89  YLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLTE 141

Query: 215 LEIE 218
           +++ 
Sbjct: 142 IDVS 145

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 13/131 (9%)

Query: 57  QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116
               L         N   +++         L  L       + +   +     L  L   
Sbjct: 104 PLTKLTYLNCD--TN---KLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH 156

Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISK 176
             +      +    +L  L  +++ I +L   + Q   L  L+      +  +    +++
Sbjct: 157 LNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD---LNQ 210

Query: 177 LSQLEELYMGN 187
             QL  L   +
Sbjct: 211 NIQLTFLDCSS 221

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 103 SLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
            L     L     + C       +    +L +L    + I +L   + Q  +L  L L+N
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNN 327

Query: 163 CWWLEVIAPNVISKLSQLEELYMGN 187
              L  +    +S  ++L+ L   N
Sbjct: 328 T-ELTELD---VSHNTKLKSLSCVN 348

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
                 L +L  L L   +++ I   A   L+KL+ L ++ +++ ++P      + L  L
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVEL 128

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            + +   +  +   V S L  +  + MG 
Sbjct: 129 RIHDNR-IRKVPKGVFSGLRNMNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 26/159 (16%), Positives = 55/159 (34%), Gaps = 13/159 (8%)

Query: 60  NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC 118
            L+L  L         +     E +  L  L    I   ++    L R   L  L L   
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLPETLNELH-LDHNKI--QAIELEDLLRYSKLYRLGLGHN 227

Query: 119 ELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS- 175
           ++  I   ++  L  L  L L  + ++++P  +  L  LQ++ L     +  +  N    
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCP 286

Query: 176 -----KLSQLEELYMGNGFSGWEKVEGGSNASLVELERL 209
                K +    + + N    + +V+  +   + +   +
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 17/148 (11%)

Query: 50  QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLI 108
           ++LPE L     +L L   + N    +          L  L         + + SL  L 
Sbjct: 189 KDLPETLN----ELHL---DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 109 NLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQLPVEI-------GQLTRLQLLDL 160
            L+ L LD  +L+ + A +  LK L+++ L  +NI ++ V          +      + L
Sbjct: 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

Query: 161 S-NCWWLEVIAPNVISKLSQLEELYMGN 187
             N      + P     ++    +  GN
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 86  GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNINQ 144
           G  VL     G ++LP  L    ++ TL +    L  + A   +L+ LE   ++ + +  
Sbjct: 41  GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTS 95

Query: 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYMGN 187
           LPV    L  L +                +  L S L +L++  
Sbjct: 96  LPVLPPGLLELSIFSNPL---------THLPALPSGLCKLWIFG 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 31/156 (19%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           +++    +  LP+ L   ++    L    N    +          L+ L+  G   +SLP
Sbjct: 45  LNVGESGLTTLPDCL-PAHITT--LVIPDNNLTSLPALP----PELRTLEVSGNQLTSLP 97

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEI-----------------LSLAYSNINQ 144
                L+ L         L  +     L KL I                 LS++ + +  
Sbjct: 98  VLPPGLLELSIFSNPLTHLPAL--PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 155

Query: 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL 180
           LP    +L +L   +      L  + P + S L +L
Sbjct: 156 LPALPSELCKLWAYNNQ----LTSL-PMLPSGLQEL 186

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 8/138 (5%)

Query: 82  EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYS 140
               GLK L   G   +SLP        L+ L +    L  +      L  L   S+  +
Sbjct: 218 ALPSGLKELIVSGNRLTSLPVLPS---ELKELMVSGNRLTSLPMLPSGLLSL---SVYRN 271

Query: 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN 200
            + +LP  +  L+    ++L     L       + +++                      
Sbjct: 272 QLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330

Query: 201 ASLVELERLTELTTLEIE 218
              + L     L      
Sbjct: 331 TRALHLAAADWLVPAREG 348

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQLTRLQ 156
            +S  RL +LQ L ++      +        L  L IL L Y+   QL       L  L+
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106

Query: 157 LLDLSNCW-WLEVIAPNVISKLSQLEELYMGN 187
           +L L+ C     V++ N    L+ LE L + +
Sbjct: 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 7/140 (5%)

Query: 54  ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGME--GLKVLQFPGIGSSSLPSSL-GRLINL 110
           + L   N                 +  F+G+E  G+K          +L  S+     +L
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 111 QTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLE 167
           + L L   E+  I   A   L  L  L+L+ + +  +   +   L +L++LDLS    + 
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IR 360

Query: 168 VIAPNVISKLSQLEELYMGN 187
            +       L  L+EL +  
Sbjct: 361 ALGDQSFLGLPNLKELALDT 380

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
            S +  L  L+ L +    +  +  +     ++LE L L+++ + ++         L+ L
Sbjct: 38  TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHL 95

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           DLS   +  +        +SQL+ L +  
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLST 124

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 18/109 (16%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 81  FEGMEGLKVLQFPG--IGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA 138
              M+ L+ L      +             +L +L +    L D        ++++L L 
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH 429

Query: 139 YSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            + I  +P ++ +L  LQ L++++   L+ +   +  +L+ L+++++  
Sbjct: 430 SNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 76  VSDHFFEGMEGLKVLQFPGIGSSSLPSSLG---RLINLQTLCLDWCELADIAAIG---QL 129
                   +  L+ L         L        ++ +LQ L +    ++     G     
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 130 KKLEILSLAYSNINQLPVEI-GQLTR-LQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           K L  L+++    N L   I   L   +++LDL +   ++ I P  + KL  L+EL + +
Sbjct: 399 KSLLSLNMSS---NILTDTIFRCLPPRIKVLDLHSN-KIKSI-PKQVVKLEALQELNVAS 453

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
                 L NL TL L   +++ I+  A   L KLE L L+ + + +LP        LQ L
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQEL 126

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
            +     +  +  +V + L+Q+  + +G 
Sbjct: 127 RVHEN-EITKVRKSVFNGLNQMIVVELGT 154

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 11/96 (11%)

Query: 101 PSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
            +SL  L NL  L L +  ++ +   ++     L  L L  + + ++P  +     +Q++
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268

Query: 159 DLS-NCWWLEVIAPNVI------SKLSQLEELYMGN 187
            L  N   +  I  N        +K +    + + +
Sbjct: 269 YLHNNN--ISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 15/127 (11%)

Query: 49  IQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR 106
           I ++         NL    L    N    V +        L+ L         +P  L  
Sbjct: 204 ITKVDAASLKGLNNLAK--LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

Query: 107 LINLQTLCLDWCELADIAA--------IGQLKKLEILSLAYSNINQLPVEIG---QLTRL 155
              +Q + L    ++ I +          +      +SL  + +    ++      +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 156 QLLDLSN 162
             + L N
Sbjct: 322 AAVQLGN 328

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 16/202 (7%)

Query: 49  IQELPERLQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEG-LKVLQFPGIGSSSLPSSLGR 106
           I+ LP+  +  +LQ  LL  + N  +  +  + F G+     +L     G   + +S   
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

Query: 107 LINLQTLCL-DWCELADI--AAIGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSN 162
              L  L L D   L ++            IL ++ + I+ LP      L +L+     N
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 163 CWWLEVIAPNVISKLSQLEELYMGN-----GFSGWEKVEGGSNASLVELERLTELTTLEI 217
              L+ +    + KL  L E  +        F+ W +     +    +     E+  +  
Sbjct: 236 ---LKKLPT--LEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQ 290

Query: 218 EVPDAEILPPDFVSVELQRYKI 239
                  L  D  S   + + +
Sbjct: 291 ARGQRSSLAEDNESSYSRGFDM 312

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 19/174 (10%)

Query: 59  PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW 117
           P L   +   + N  + ++   F+ +  L+ L     G   LP       +    L +  
Sbjct: 79  PKLH-EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI-- 135

Query: 118 CELADIAAI------GQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAP 171
            +  +I  I      G   +  IL L  + I ++       T+L  L+LS+   LE +  
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 172 NVISKLSQLEELYMGN---------GFSGWEKVEGGSNASLVELERLTELTTLE 216
           +V    S    L +           G    +K+   S  +L +L  L +L  L 
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALM 249

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 13/125 (10%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
           ++       L            +L+   NG  ++ +  F G +  ++          LP+
Sbjct: 143 TIERNSFVGLSFESV-------ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 103 -SLGRLINLQTLCLDWCELADIAAIG--QLKKLEILSLAYSNINQLPVEIGQLTRLQLLD 159
                      L +    +  + + G   LKKL   S    N+ +LP  + +L  L    
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT-LEKLVALMEAS 252

Query: 160 LSNCW 164
           L+   
Sbjct: 253 LTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 132 LEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188
              L    + +  +          L+ +++S    LEVI  +V S L +L E+ +   
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 4/83 (4%)

Query: 109 NLQTLCLDWCELADI--AAIGQLKKLEILSLAYSN-INQLPVEI-GQLTRLQLLDLSNCW 164
           + QTL L    L  I   A   L  +  + ++    + QL       L+++  +++ N  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 165 WLEVIAPNVISKLSQLEELYMGN 187
            L  I P+ + +L  L+ L + N
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFN 114

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 13/153 (8%)

Query: 47  RDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSLPS-SL 104
           +DIQ +P     P+ Q   L         +  H F  +  +  +      +   L S S 
Sbjct: 21  KDIQRIPSLP--PSTQT--LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 105 GRLINLQTLCLDW-CELADIA--AIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLD 159
             L  +  + +     L  I   A+ +L  L+ L +  + +   P   ++       +L+
Sbjct: 77  YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILE 136

Query: 160 LSNCWWLEVIAPNVISKL-SQLEELYM-GNGFS 190
           +++  ++  I  N    L ++   L +  NGF+
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 7/114 (6%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAI------GQLKKLEI 134
            + +  LK L     G    P             L+  +   + +I      G   +   
Sbjct: 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 135 LSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL-SQLEELYMGN 187
           L L  +    +       T+L  + L+   +L VI  +    + S    L +  
Sbjct: 161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 64/483 (13%), Positives = 125/483 (25%), Gaps = 109/483 (22%)

Query: 84  MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQ-LKKLEILSLAY- 139
              L    + G     + +       L+ + L    + D  +  I +  K  ++L L+  
Sbjct: 81  DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140

Query: 140 SNINQLPVE--IGQLTRLQLLDLSNCW-------WLEVIAPNVISKLSQLEELYMGNGFS 190
              +   +         L+ LDL           WL           + L  L +    S
Sbjct: 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT----YTSLVSLNISCLAS 196

Query: 191 GWEKVEGGSNASLVEL-ERLTELTTLEIE--VPDAEILP-----PDFVSVELQRYKIRIG 242
                   S ++L  L  R   L +L++   VP  ++       P    +    Y   + 
Sbjct: 197 EV------SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250

Query: 243 DGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRT---EDLWLE----TLE 295
                     L       L  L G               +         L L        
Sbjct: 251 PDVYSGLSVALSGC--KELRCLSGFWDAV----PAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 296 GVQSVVHELDDGEGFPRLKRLLVTDC---SEILHIVGSVRRVRCEVFPLLEALSLMFLTN 352
            +  ++ +       P+L+RL V D    + +  +  +           L  L +     
Sbjct: 305 DLVKLLCQC------PKLQRLWVLDYIEDAGLEVLAST--------CKDLRELRVFPSEP 350

Query: 353 LETICYSQLREDQSFSNLRIINVDSCRKLKYLFSF----------SMAKNLLRLQKVKVE 402
                   L  +Q   ++       C KL+ +  F          ++A+N   + + ++ 
Sbjct: 351 FVMEPNVALT-EQGLVSV----SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 403 DCDDLKMIIGPDMEKPPTTQGFIEINAE--------------DDPVHQGIYCCQNLTKVT 448
             +             P   GF  I                 D          + +  ++
Sbjct: 406 IIEPKAPDYLTLE---PLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462

Query: 449 VWSCHR----LKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHY 504
           V         + ++ S         L+ LEIR+C                       +  
Sbjct: 463 VAFAGDSDLGMHHVLS-----GCDSLRKLEIRDCPF-------GDKALLANASKLETMRS 510

Query: 505 LSL 507
           L +
Sbjct: 511 LWM 513

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 112/475 (23%)

Query: 57  QCPNLQLFLLYTEGNGPMQVSD----HFFEGMEGLKVLQF---PGIGSSSLPSSLGRLIN 109
               L+   L       M V+D       +  +  KVL      G  +  L +      N
Sbjct: 103 SYTWLEEIRLK-----RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN 157

Query: 110 LQTLCLDWCELADIAAIG------QLKKLEILSLA--YSNINQLPVE--IGQLTRLQLLD 159
           L+ L L   ++ D++             L  L+++   S ++   +E  + +   L+ L 
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217

Query: 160 LSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVE-LERLTELTTLEI- 217
           L+    LE +A  ++ +  QLEEL  G       +V     + L   L    EL  L   
Sbjct: 218 LNRAVPLEKLAT-LLQRAPQLEELGTG---GYTAEVRPDVYSGLSVALSGCKELRCLSGF 273

Query: 218 -EVPDAEILP-----PDFVSVELQRYKIRIGDGPEDEFDPLLVK--SEASRLMMLKGIKK 269
            +   A +           ++ L    ++            LVK   +  +L  L  +  
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQ---------SYDLVKLLCQCPKLQRLWVLDY 324

Query: 270 VSI------------LQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLL 317
           +              L+E           E     T +G+ SV        G P+L+ +L
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM------GCPKLESVL 378

Query: 318 VTDCSEI----LHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRII 373
              C ++    L  +   R       P +    L  +        +    D  F  +   
Sbjct: 379 Y-FCRQMTNAALITIARNR-------PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI--- 427

Query: 374 NVDSCRKLKYLF---------SFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF 424
            V+ C+ L+ L             +     +++ + V    D             +  G 
Sbjct: 428 -VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGD-------------SDLGM 473

Query: 425 IEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR 479
             + +           C +L K+ +  C         +  + L  ++ L + +C 
Sbjct: 474 HHVLS----------GCDSLRKLEIRDCPFGDKA-LLANASKLETMRSLWMSSCS 517

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 89  VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL-PV 147
           VL         L         L+ L      L  IA + +L KL+ L L+ + ++    V
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 148 EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
              +   L  L+LS          N I  LS +E L
Sbjct: 83  LAEKCPNLTHLNLSG---------NKIKDLSTIEPL 109

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 59/391 (15%), Positives = 115/391 (29%), Gaps = 69/391 (17%)

Query: 58  CPNLQLFLLYTEGNGPMQVSD----HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113
             +L++   Y       ++S             L  ++        L        NL+  
Sbjct: 191 NTSLEVLNFYMTEFA--KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 114 CLDWCELAD-----IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV 168
           C                +   +KL  L L+Y   N++P+      +++ LDL        
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 169 IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTLEIEVPDAEILPP 227
               +I K   LE L   N            +  L  L +   +L  L IE    E    
Sbjct: 309 DHCTLIQKCPNLEVLETRNVI---------GDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 228 DFVSV--------------ELQR---YKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV 270
           D   +              EL+    Y   I +   +     L      RL++L   +++
Sbjct: 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 271 SILQENDGTKMLLQ---RTEDLWLE------TLEGVQSVVHELDDGEGFPRLKRLLVTDC 321
           + L  ++G + LL    +             T  G+  +      G+  P ++ +L+   
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI------GQYSPNVRWMLLGYV 473

Query: 322 SE----ILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS 377
            E    ++                L+ L +      E    + +       +LR + V  
Sbjct: 474 GESDEGLMEFSRGCPN--------LQKLEMRGCCFSERAIAAAVT---KLPSLRYLWVQG 522

Query: 378 CRKLKYLFS-FSMAKNLLRLQKVKVEDCDDL 407
            R          MA+    ++ +      ++
Sbjct: 523 YRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 57/487 (11%), Positives = 129/487 (26%), Gaps = 110/487 (22%)

Query: 57  QCPNLQ-LFLLYTE--GNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL 113
               L+ +             +++    + +E LK+ +  G  +  L S +     ++TL
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 114 CLDWCELAD-----IAAIGQ-LKKLEILSLAYSNINQLPVE-----IGQLTRLQLLDLSN 162
            ++    ++     +  + Q    LE+L+   +   ++  +           L  + + +
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229

Query: 163 CWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221
              LE++      + L +     +       EK         +    L+ +   E+ +  
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289

Query: 222 AEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKM 281
                     ++L    +   D                       I+K   L+       
Sbjct: 290 P--FAAQIRKLDLLYALLETEDH-------------------CTLIQKCPNLEV------ 322

Query: 282 LLQRTEDLWLE---TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEV 338
                  L         G++ +       +   +LKRL +   ++   +      V    
Sbjct: 323 -------LETRNVIGDRGLEVL------AQYCKQLKRLRIERGADEQGMEDEEGLVSQR- 368

Query: 339 FPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQK 398
              L AL+                  Q    L  + V     +      S+   L  L  
Sbjct: 369 --GLIALA------------------QGCQELEYMAV-YVSDITNESLESIGTYLKNLCD 407

Query: 399 VKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGI---YCCQNLTKVTVW----S 451
            ++   D  + I    ++      G   +        +          LT + +      
Sbjct: 408 FRLVLLDREERITDLPLD-----NGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 452 CHRLKYLFS----------YSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPK 501
              ++++                     LQ LE+R C         +           P 
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC-------CFSERAIAAAVTKLPS 514

Query: 502 LHYLSLH 508
           L YL + 
Sbjct: 515 LRYLWVQ 521

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 101 PSSLGRLINLQTLCLDWCELADI--AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLL 158
              +  L  L+ L L    +  +        + LE L ++++ +  +      +  L+ L
Sbjct: 69  MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHL 126

Query: 159 DLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           DLS   +  +        L++L  L +  
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 62  QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-----GRLINLQTLCLD 116
           +L  L  + NG            + +  L+   +  +SL S           ++  L L 
Sbjct: 378 RLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS 436

Query: 117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS-NCWWLEVIAPNVIS 175
              L          K+++L L  + I  +P ++  L  LQ L+++ N   L+ +   V  
Sbjct: 437 SNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ--LKSVPDGVFD 494

Query: 176 KLSQLEELYMGN 187
           +L+ L+ +++ +
Sbjct: 495 RLTSLQYIWLHD 506

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 9/114 (7%)

Query: 102 SSLGRLINLQTLCLDWCELADIAAIG-QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
           +     +  + L L   ++  I  +G  L + + +  + + I +L      L RL+ L +
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLV 71

Query: 161 SNCWWLEVIAPNVISKLSQLEELYM-GNGFSGWEKVEGGSNASLVELERLTELT 213
           +N   +  I   +   L  L EL +  N       ++      L  L+ LT L 
Sbjct: 72  NNNR-ICRIGEGLDQALPDLTELILTNNSLVELGDLD-----PLASLKSLTYLC 119

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 10/104 (9%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
           +      + L   G     + +    L     +     E+  +     L++L+ L +  +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN 74

Query: 141 NINQLPVEIGQ-LTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
            I ++   + Q L  L  L L+N         N + +L  L+ L
Sbjct: 75  RICRIGEGLDQALPDLTELILTN---------NSLVELGDLDPL 109

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 90  LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIA--AIGQLKKLEILSLAYSNINQLPV 147
           L               +L  L+ +     ++ DI   A      +  + L  + +  +  
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98

Query: 148 EI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
           ++   L  L+ L L +   +  +  +    LS +  L + +
Sbjct: 99  KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYD 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 89  VLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQL-PV 147
           VL         +       +NL+ L L    L  ++ + +L KL+ L L+ + I     +
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDM 89

Query: 148 EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
              +L  L  L+LS          N +  +S LE L
Sbjct: 90  LAEKLPNLTHLNLSG---------NKLKDISTLEPL 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 98  SSLPS-SLGRLINLQTLCLDWCELADIAAIG---QLKKLEILSLAYSNINQLPVEI-GQL 152
             +P  +      L+ + L   +++++A       L+ L  L L  + I +LP  +   L
Sbjct: 45  KVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGNKITELPKSLFEGL 103

Query: 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT 210
             LQLL L+    +  +  +    L  L  L + +     + +  G+ + L  ++ + 
Sbjct: 104 FSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK--LQTIAKGTFSPLRAIQTMH 158

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query: 90  LQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAY-SNINQLP 146
           L    I  S+L   L +   LQ L L+   L+D  +  + +   L  L+L+  S  ++  
Sbjct: 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159

Query: 147 VE--IGQLTRLQLLDLSNCWWL--EVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS 202
           ++  +   +RL  L+LS C+    + +   V      + +L      SG+ K      + 
Sbjct: 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN----LSGYRK--NLQKSD 213

Query: 203 LVEL-ERLTELTTL 215
           L  L  R   L  L
Sbjct: 214 LSTLVRRCPNLVHL 227

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 86  GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNI 142
           G+   + P        +       +Q + L    +        + Q  KL+ LSL    +
Sbjct: 71  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 130

Query: 143 NQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISK-LSQLEELYMGN 187
           +   V  + + + L  L+LS C      A   +    S+L+EL +  
Sbjct: 131 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 58  CPNLQ-LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG----IGSSSLPSSLGRLINLQT 112
           C  L  L L +        V        E +  L   G    +  S L + + R  NL  
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Query: 113 LCLDWCEL---ADIAAIGQLKKLEILSLAY-SNI-NQLPVEIGQLTRLQLLDLSNC 163
           L L    +          QL  L+ LSL+   +I  +  +E+G++  L+ L +   
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 27/149 (18%)

Query: 66  LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCLDWCELADIA 124
           L  + N    +    F  +  L++L        +LP+ +   L NL+TL +   +L  + 
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 125 A--IGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCW----------------- 164
                QL  L  L L  + +  LP  +   LT+L  L L                     
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161

Query: 165 -WLE-----VIAPNVISKLSQLEELYMGN 187
             L       +      KL++L+ L + N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 7e-05
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 9/95 (9%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLE----ILSLAYSNINQLPVEIGQL 152
           + LP       +L+ L +    L  + A   +    E          + I  +P  I  L
Sbjct: 173 TFLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSL 229

Query: 153 TRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187
                + L +   L       +S+ +   + +   
Sbjct: 230 DPTCTIILEDN-PLSSRIRESLSQQTAQPDYHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 22/109 (20%)

Query: 84  MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI-AAIGQLKKLEILSLAYSNI 142
           +     LQ   +  SSLP +L     +  L +    L  +      L+ L+        +
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDN---RL 112

Query: 143 NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKL----SQLEELYMGN 187
           + LP     L  L + +            N ++ L    + LE +   N
Sbjct: 113 STLPELPASLKHLDVDN------------NQLTMLPELPALLEYINADN 149

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 33/159 (20%)

Query: 43  SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS 102
            L   ++  LP+ L  P + +  L    N  + + +        L+ L       S+LP 
Sbjct: 65  QLNRLNLSSLPDNL-PPQITV--LEITQNALISLPELP----ASLEYLDACDNRLSTLPE 117

Query: 103 SLGRLINLQTLCLDWCELADI-AAIGQLKK-----------------LEILSLAYSNINQ 144
                 +L+ L +D  +L  +      L+                  LE+LS+  + +  
Sbjct: 118 LPA---SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF 174

Query: 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
           LP     L     LD+S    LE + P V  +    EE 
Sbjct: 175 LPELPESLEA---LDVSTN-LLESL-PAVPVRNHHSEET 208

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
           +   +    L ++  +  +  ++  +  I  L  +  L+L  + ++ +   + +LT L  
Sbjct: 32  TDAVTQNE-LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA-LKELTNLTY 89

Query: 158 LDL-SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLT----EL 212
           L L  N   L+ +   V  KL+ L+EL +    +  + +  G    L  L  L     +L
Sbjct: 90  LILTGNQ--LQSLPNGVFDKLTNLKELVLVE--NQLQSLPDGVFDKLTNLTYLNLAHNQL 145

Query: 213 TTLEIEVPD 221
            +L   V D
Sbjct: 146 QSLPKGVFD 154

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 66  LYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCLDWCELADIA 124
           L  +  G   +SD  F G+  L  L        +L + +   L  L TL L   +LA + 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 125 A--IGQLKKLEILSLAYSNINQLPVEI-GQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE 181
                 L +L+ L L  + +  LP  +  +LT+L+ L L+    L+ I      KL+ L+
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQ 158

Query: 182 ELYMGN 187
            L +  
Sbjct: 159 TLSLST 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	540
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.74
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.73
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.72
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.72
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.65
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.61
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.57
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.57
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.45
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.01
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.83
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.83
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.78
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.65
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.57
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.18
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.93
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.63
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.12
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.7

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.2e-32  Score=287.65  Aligned_cols=165  Identities=26%  Similarity=0.264  Sum_probs=135.4

Q ss_pred             CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194           23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL  100 (540)
Q Consensus        23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  100 (540)
                      .+.+++.+|. .++++++++++++|.+..++.  +.++++|++|++++|.+  ..++...|.++++|++|++++|.+..+
T Consensus        19 ~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l~~~   95 (606)
T 3vq2_A           19 MDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPIQSF   95 (606)
T ss_dssp             TTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCCC
T ss_pred             cCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCccccc
Confidence            3445666665 467899999999999977765  44999999999999986  556555678999999999999999876


Q ss_pred             -CcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCc--ccchhcCCCCCCCEEECCCCccccccchhhhh
Q 009194          101 -PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS  175 (540)
Q Consensus       101 -~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  175 (540)
                       |..++++++|++|++++|.++. + ..++++++|++|++++|.+.  .+|..++++++|++|++++|. +..++...++
T Consensus        96 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~  174 (606)
T 3vq2_A           96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQ  174 (606)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTH
T ss_pred             ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhh
Confidence             7889999999999999999887 4 78999999999999999887  578999999999999999988 5555444355


Q ss_pred             cCCccc----eEEccCCCcc
Q 009194          176 KLSQLE----ELYMGNGFSG  191 (540)
Q Consensus       176 ~l~~L~----~L~l~~~~~~  191 (540)
                      .+++|+    .|++++|.+.
T Consensus       175 ~l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          175 FLRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             HHHHCTTCCCEEECTTCCCC
T ss_pred             hhhccccccceeeccCCCcc
Confidence            555444    5777666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.5e-31  Score=279.23  Aligned_cols=433  Identities=14%  Similarity=0.104  Sum_probs=265.1

Q ss_pred             CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194           23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL  100 (540)
Q Consensus        23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  100 (540)
                      .+.+++.+|. .+++.++++++++|.+..++.  +.++++|++|++++|.+  ..+....|.++++|++|++++|.+..+
T Consensus        20 ~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~   96 (606)
T 3t6q_A           20 ENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFM   96 (606)
T ss_dssp             TTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred             CCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCccccc
Confidence            3445556664 568899999999999977743  44999999999999987  445555578999999999999999864


Q ss_pred             -CcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhc
Q 009194          101 -PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISK  176 (540)
Q Consensus       101 -~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~  176 (540)
                       |..++++++|++|++++|.++.  +..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...++.
T Consensus        97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  175 (606)
T 3t6q_A           97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSS  175 (606)
T ss_dssp             CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHT
T ss_pred             ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhh
Confidence             7789999999999999999987  588999999999999999998753 334559999999999998 66666666899


Q ss_pred             CCccc--eEEccCCCcccccccCCCcc-----------------------------------------chhhccCCC--C
Q 009194          177 LSQLE--ELYMGNGFSGWEKVEGGSNA-----------------------------------------SLVELERLT--E  211 (540)
Q Consensus       177 l~~L~--~L~l~~~~~~~~~~~~~~~~-----------------------------------------~~~~l~~l~--~  211 (540)
                      +++|+  .|++++|.+...........                                         ....+..+.  +
T Consensus       176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~  255 (606)
T 3t6q_A          176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS  255 (606)
T ss_dssp             TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred             hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence            99999  88888887653322111000                                         000011111  4


Q ss_pred             ccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhccccee
Q 009194          212 LTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDL  289 (540)
Q Consensus       212 L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  289 (540)
                      |+.|++.+|.+..++.....  ++|+.|.++.+.....+.  ....+++|++|+++++.- ..+  .......+++|+.|
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~l-~~~--~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKF-ENL--CQISASNFPSLTHL  330 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS--SCCSCTTCCEEECTTCCC-SBG--GGGCGGGCTTCSEE
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh--hhcccccCCEEECccCCc-CcC--chhhhhccCcCCEE
Confidence            66666666666655554322  667777665544332211  134566777777766321 111  11122235666666


Q ss_pred             eeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCC
Q 009194          290 WLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSN  369 (540)
Q Consensus       290 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  369 (540)
                      .+.++.........  .+..+++|++|+++++. ++.+..  .......+++|+.|+++++. +..+....   ++.+++
T Consensus       331 ~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~  401 (606)
T 3t6q_A          331 SIKGNTKRLELGTG--CLENLENLRELDLSHDD-IETSDC--CNLQLRNLSHLQSLNLSYNE-PLSLKTEA---FKECPQ  401 (606)
T ss_dssp             ECCSCSSCCBCCSS--TTTTCTTCCEEECCSSC-CCEEEE--STTTTTTCTTCCEEECCSCS-CEEECTTT---TTTCTT
T ss_pred             ECCCCCcccccchh--hhhccCcCCEEECCCCc-cccccC--cchhcccCCCCCEEECCCCc-CCcCCHHH---hcCCcc
Confidence            66655432221111  14456677777776663 333210  01134556667777776642 33333222   455666


Q ss_pred             CCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCC-----CCCCccCCCCc
Q 009194          370 LRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP-----VHQGIYCCQNL  444 (540)
Q Consensus       370 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~-----~~~~~~~~~~L  444 (540)
                      |++|++++| .++...+...+..+++|+.|++++|. ++.......+.++.|..+ .+.++.-.     ....+..+++|
T Consensus       402 L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          402 LELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHL-NLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             CSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEE-ECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             CCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEE-ECCCCCCCccccccchhhccCCCc
Confidence            777777665 34433232334556667777776643 333333344444555554 34333211     11234456677


Q ss_pred             cEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194          445 TKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC  478 (540)
Q Consensus       445 ~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C  478 (540)
                      +.|++++| +++.+++ ..+.++++|++|+++++
T Consensus       479 ~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          479 EILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             CEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             cEEECCCC-ccCccCh-hhhccccCCCEEECCCC
Confidence            77777766 3444422 23456667777777665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=1.4e-30  Score=276.72  Aligned_cols=444  Identities=15%  Similarity=0.119  Sum_probs=289.5

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~  117 (540)
                      -++++.+++.+..+|... .+++++|++++|.+  ..++...|.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCceEccCCCcccCCCCC-CCCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence            457899999998888743 37999999999997  566665679999999999999999876 56789999999999999


Q ss_pred             CccCC--cccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCcccc
Q 009194          118 CELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      |.++.  |..++++++|++|++++|.+..++ ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence            99887  689999999999999999998777 569999999999999998433 46766 89999999999999977632


Q ss_pred             cccCCCccchhhccCCCC-ccEEEeecCCCCCCCccccc-cCccEEEEE-------------------------------
Q 009194          194 KVEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS-VELQRYKIR-------------------------------  240 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~-------------------------------  240 (540)
                      ..     ..+..+.+++. +++|++++|.+..++..... .+|+.|.++                               
T Consensus       169 ~~-----~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          169 TV-----NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CT-----TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             Ch-----hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            21     11122222222 33455554444433333222 233333333                               


Q ss_pred             --------------------------------------------------ecCCCCCCCCccccccccccEEEEeccccc
Q 009194          241 --------------------------------------------------IGDGPEDEFDPLLVKSEASRLMMLKGIKKV  270 (540)
Q Consensus       241 --------------------------------------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (540)
                                                                        ........   ....+++|++|++.++.- 
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-  319 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-  319 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-
T ss_pred             CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-
Confidence                                                              22221111   123344555555555332 


Q ss_pred             cccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccccc
Q 009194          271 SILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL  350 (540)
Q Consensus       271 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  350 (540)
                      ..++   ..  .+++|+.|.+.++......    . ...+++|++|+++++ .++.+..  .......+++|+.|+++++
T Consensus       320 ~~lp---~~--~l~~L~~L~l~~n~~~~~~----~-~~~l~~L~~L~ls~n-~l~~~~~--~~~~~~~~~~L~~L~L~~n  386 (606)
T 3vq2_A          320 KQFP---TL--DLPFLKSLTLTMNKGSISF----K-KVALPSLSYLDLSRN-ALSFSGC--CSYSDLGTNSLRHLDLSFN  386 (606)
T ss_dssp             SSCC---CC--CCSSCCEEEEESCSSCEEC----C-CCCCTTCCEEECCSS-CEEEEEE--CCHHHHCCSCCCEEECCSC
T ss_pred             cccc---cC--CCCccceeeccCCcCccch----h-hccCCCCCEEECcCC-ccCCCcc--hhhhhccCCcccEeECCCC
Confidence            2222   11  3455555555554333221    1 446667777777666 3333310  0114456777888888775


Q ss_pred             ccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeeccc
Q 009194          351 TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAE  430 (540)
Q Consensus       351 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~  430 (540)
                      . ++.++..    ...+++|++|++++| .+...++...+..+++|+.|++++|. +........+.+++|..+ .+.++
T Consensus       387 ~-l~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L-~l~~n  458 (606)
T 3vq2_A          387 G-AIIMSAN----FMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTL-KMAGN  458 (606)
T ss_dssp             S-EEEECCC----CTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEE-ECTTC
T ss_pred             c-cccchhh----ccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccchhhhcCCCCCCEE-ECCCC
Confidence            4 5555422    667888888888886 45555443446678888888888865 444444455566666666 45444


Q ss_pred             CCC---CCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeec
Q 009194          431 DDP---VHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSL  507 (540)
Q Consensus       431 ~~~---~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l  507 (540)
                      .-.   .+..+..+++|+.|++++| +++.+++ ..+.++++|++|++++|. ++.... +.      +..+++|++|++
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~------~~~l~~L~~L~l  528 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDS-SH------YNQLYSLSTLDC  528 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEG-GG------TTTCTTCCEEEC
T ss_pred             cCCCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCH-HH------ccCCCcCCEEEC
Confidence            311   2344567888999999888 4555533 346778899999998874 444321 22      336788999999


Q ss_pred             ccCCCCC-------CCC-CCCceEeecC
Q 009194          508 HWLPKLS-------SFA-SPEDVIHTEM  527 (540)
Q Consensus       508 ~~~p~L~-------~~~-~l~~l~i~~c  527 (540)
                      ++++ ++       .++ +|+.+++.++
T Consensus       529 ~~N~-l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          529 SFNR-IETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             TTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred             CCCc-CcccCHhHhhhcccCcEEEccCC
Confidence            8775 44       334 4788888764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=274.08  Aligned_cols=446  Identities=18%  Similarity=0.167  Sum_probs=288.6

Q ss_pred             CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194           23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL  100 (540)
Q Consensus        23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  100 (540)
                      .+.+++++|. .+++.+++|++++|.+..++.  +.++++|++|++++|.+  ..++.+.|.++++|++|++++|.+..+
T Consensus        15 ~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~   91 (570)
T 2z63_A           15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL   91 (570)
T ss_dssp             CSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCcc
Confidence            3455666665 567899999999999977764  45899999999999986  566666679999999999999999876


Q ss_pred             C-cccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcc--cchhcCCCCCCCEEECCCCccccccchhhhh
Q 009194          101 P-SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS  175 (540)
Q Consensus       101 ~-~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  175 (540)
                      + ..++++++|++|++++|.++. + ..++++++|++|++++|.+..  +|..++++++|++|++++|. +..++...++
T Consensus        92 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  170 (570)
T 2z63_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR  170 (570)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGH
T ss_pred             CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHcc
Confidence            5 688999999999999999887 4 469999999999999998875  78899999999999999998 5566555577


Q ss_pred             cCCcc----ceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCC------------------------------
Q 009194          176 KLSQL----EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD------------------------------  221 (540)
Q Consensus       176 ~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------------------------  221 (540)
                      .+++|    +.+++++|.+......        .+... +|+.|++.+|.                              
T Consensus       171 ~l~~L~~~~~~L~l~~n~l~~~~~~--------~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~  241 (570)
T 2z63_A          171 VLHQMPLLNLSLDLSLNPMNFIQPG--------AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG  241 (570)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTT--------TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred             chhccchhhhhcccCCCCceecCHH--------HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence            78777    7888888876532211        11111 23333333221                              


Q ss_pred             -----------------------------CCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecccccc
Q 009194          222 -----------------------------AEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS  271 (540)
Q Consensus       222 -----------------------------~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (540)
                                                   .+..+..+.. ++|+.+.+..+.......  ..... +|++|++.++.- .
T Consensus       242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~--~~~~~-~L~~L~l~~n~~-~  317 (570)
T 2z63_A          242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF-GWQHLELVNCKF-G  317 (570)
T ss_dssp             SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB--CCSCC-CCSEEEEESCBC-S
T ss_pred             hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh--hhccC-CccEEeeccCcc-c
Confidence                                         1112222222 677777775543222110  13334 777777777432 2


Q ss_pred             ccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccc
Q 009194          272 ILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT  351 (540)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  351 (540)
                      .++  .   ..+++|+.|.+.+......    .. ...+++|++|+++++ .++.+..  .......+++|+.|+++++.
T Consensus       318 ~l~--~---~~l~~L~~L~l~~n~~~~~----~~-~~~~~~L~~L~l~~n-~l~~~~~--~~~~~~~~~~L~~L~l~~n~  384 (570)
T 2z63_A          318 QFP--T---LKLKSLKRLTFTSNKGGNA----FS-EVDLPSLEFLDLSRN-GLSFKGC--CSQSDFGTTSLKYLDLSFNG  384 (570)
T ss_dssp             SCC--B---CBCSSCCEEEEESCBSCCB----CC-CCBCTTCCEEECCSS-CCBEEEE--EEHHHHTCSCCCEEECCSCS
T ss_pred             ccC--c---ccccccCEEeCcCCccccc----cc-cccCCCCCEEeCcCC-ccCcccc--ccccccccCccCEEECCCCc
Confidence            222  1   2456777777776543221    11 256777777777776 3333310  00134566777777777643


Q ss_pred             cccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccC
Q 009194          352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAED  431 (540)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~  431 (540)
                       +..++..    ...+++|++|++++| .++..++...+..+++|++|++++|. +.......+..++.|..+ .+.++.
T Consensus       385 -l~~~~~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L-~l~~n~  456 (570)
T 2z63_A          385 -VITMSSN----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVL-KMAGNS  456 (570)
T ss_dssp             -EEEEEEE----EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEE-ECTTCE
T ss_pred             -ccccccc----ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEE-ECcCCc
Confidence             4444332    445677777777775 34444333335667777777777753 333333444445555555 444432


Q ss_pred             C---CCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecc
Q 009194          432 D---PVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLH  508 (540)
Q Consensus       432 ~---~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~  508 (540)
                      .   ..+..+..+++|+.|++++|. ++.+.+ ..+.++++|++|++++| .++.++. +.      +..+++|++|+++
T Consensus       457 l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~------~~~l~~L~~L~l~  526 (570)
T 2z63_A          457 FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-TAFNSLSSLQVLNMASN-QLKSVPD-GI------FDRLTSLQKIWLH  526 (570)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCSCCCT-TT------TTTCTTCCEEECC
T ss_pred             CccccchhhhhcccCCCEEECCCCc-cccCCh-hhhhcccCCCEEeCCCC-cCCCCCH-HH------hhcccCCcEEEec
Confidence            1   133455678889999998884 555532 34567888999999887 4555432 11      3367888888888


Q ss_pred             cCCCCCCC
Q 009194          509 WLPKLSSF  516 (540)
Q Consensus       509 ~~p~L~~~  516 (540)
                      ++|--...
T Consensus       527 ~N~~~~~~  534 (570)
T 2z63_A          527 TNPWDCSC  534 (570)
T ss_dssp             SSCBCCCT
T ss_pred             CCcccCCC
Confidence            76644333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=5e-29  Score=268.27  Aligned_cols=426  Identities=15%  Similarity=0.092  Sum_probs=258.7

Q ss_pred             chhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc
Q 009194           25 ADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS  102 (540)
Q Consensus        25 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~  102 (540)
                      ..++.+|. .+++++++|++++|.+..++.  +.++++|++|++++|.+  ..++.+.|.++++|++|++++|.+..+|.
T Consensus        14 ~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~   90 (680)
T 1ziw_A           14 LKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQLSD   90 (680)
T ss_dssp             SCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred             CCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCccCh
Confidence            34455564 457899999999999988775  44899999999999987  55555667999999999999999999886


Q ss_pred             -ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhh--c
Q 009194          103 -SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVIS--K  176 (540)
Q Consensus       103 -~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~  176 (540)
                       .++++++|++|++++|.++. + ..++++++|++|++++|.+... |..++++++|++|++++|. +..++...++  .
T Consensus        91 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~  169 (680)
T 1ziw_A           91 KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFA  169 (680)
T ss_dssp             TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGT
T ss_pred             hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccc
Confidence             58999999999999999887 4 7899999999999999988755 4558899999999999988 5566554344  5


Q ss_pred             CCccceEEccCCCcccccccCCCccchhhcc------------------------CCCCccEEEeecCCCCCCCcc-ccc
Q 009194          177 LSQLEELYMGNGFSGWEKVEGGSNASLVELE------------------------RLTELTTLEIEVPDAEILPPD-FVS  231 (540)
Q Consensus       177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~------------------------~l~~L~~L~l~~~~~~~~~~~-~~~  231 (540)
                      +++|+.|++++|.+......     ....+.                        ..++|+.|++++|.....+.. +..
T Consensus       170 ~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~  244 (680)
T 1ziw_A          170 NSSLKKLELSSNQIKEFSPG-----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG  244 (680)
T ss_dssp             TCEESEEECTTCCCCCBCTT-----GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred             cccccEEECCCCcccccChh-----hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence            68999999999876532211     000000                        125667777777665443322 222


Q ss_pred             ---cCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCccc-----cc--
Q 009194          232 ---VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS-----VV--  301 (540)
Q Consensus       232 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~--  301 (540)
                         ++|+.|.++.+...... ......+++|+.|+++++.- ..+  .......+++|+.|++.+......     +.  
T Consensus       245 l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          245 LKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNI-QHL--FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             GGGSCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSCCB-SEE--CTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred             cCcCCCCEEECCCCCcCccC-cccccCcccccEeeCCCCcc-Ccc--ChhhhcCCCCccEEeccchhhhccccccccccc
Confidence               34777777544432111 01134566777777766321 111  111112345555555543211000     00  


Q ss_pred             ccCccCCCCccccEEeeccccCceeeeccccccccccCcc----------------------------cceecccccccc
Q 009194          302 HELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPL----------------------------LEALSLMFLTNL  353 (540)
Q Consensus       302 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~----------------------------L~~L~l~~c~~l  353 (540)
                      ... .+..+++|++|+++++ .++.+...    ....+++                            |+.|+++++ .+
T Consensus       321 ~~~-~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l  393 (680)
T 1ziw_A          321 DDF-SFQWLKCLEHLNMEDN-DIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KI  393 (680)
T ss_dssp             CTT-TTTTCTTCCEEECCSC-CBCCCCTT----TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CC
T ss_pred             Chh-hcccCCCCCEEECCCC-ccCCCChh----HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CC
Confidence            000 1334555555555544 22222110    1233344                            444444442 23


Q ss_pred             cccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCC-
Q 009194          354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDD-  432 (540)
Q Consensus       354 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~-  432 (540)
                      +.+....   ...+++|++|+++++.--..++ ...+..+++|++|++++|. +..+....+...+.|..+ .+..+.. 
T Consensus       394 ~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L-~l~~n~l~  467 (680)
T 1ziw_A          394 SKIESDA---FSWLGHLEVLDLGLNEIGQELT-GQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRL-MLRRVALK  467 (680)
T ss_dssp             CEECTTT---TTTCTTCCEEECCSSCCEEECC-SGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEE-ECTTSCCB
T ss_pred             CeEChhh---hhCCCCCCEEeCCCCcCccccC-cccccCcccccEEecCCCC-cceeChhhhhcCcccccc-hhcccccc
Confidence            3332222   5567788888888764322333 2345677788888888754 455554555555666555 4443321 


Q ss_pred             ---CCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194          433 ---PVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC  478 (540)
Q Consensus       433 ---~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C  478 (540)
                         ..+.....+++|+.|+++++ +++.++. ..+.++++|++|+++++
T Consensus       468 ~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N  514 (680)
T 1ziw_A          468 NVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHN  514 (680)
T ss_dssp             CTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred             ccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCC
Confidence               12334456677777777775 3555533 23456666777776665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.9e-29  Score=267.94  Aligned_cols=435  Identities=15%  Similarity=0.097  Sum_probs=256.4

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~  117 (540)
                      -++++.++..+..+|... .+.+++|++++|.+  ..++...|.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus        14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCC--SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCCcccCcCCC-CCcCcEEEccCCcc--CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            457888888888888743 34799999999997  556555579999999999999999864 77899999999999999


Q ss_pred             CccCC--cccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      |.+..  |..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+..  
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~--  167 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHY--  167 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCE--
T ss_pred             CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccc--
Confidence            99886  58899999999999999999987 5669999999999999998 555422115569999999999998761  


Q ss_pred             ccCCCccchhhccCCCCcc--EEEeecCCCCCCCccccc-cCccEEEEE-------------------------------
Q 009194          195 VEGGSNASLVELERLTELT--TLEIEVPDAEILPPDFVS-VELQRYKIR-------------------------------  240 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~-~~L~~L~l~-------------------------------  240 (540)
                            .....++.+++|+  .|++++|....++..... .+|+.+.+.                               
T Consensus       168 ------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~  241 (606)
T 3t6q_A          168 ------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE  241 (606)
T ss_dssp             ------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred             ------cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence                  2245677888888  888998886665544332 444444332                               


Q ss_pred             ---------------------ecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCccc
Q 009194          241 ---------------------IGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS  299 (540)
Q Consensus       241 ---------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  299 (540)
                                           .+...... ......+++|+.|+++++. ...+  +.++ ..+++|+.|++.++.-...
T Consensus       242 ~i~~~~~~~l~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~l--p~~l-~~l~~L~~L~l~~n~l~~~  316 (606)
T 3t6q_A          242 DISPAVFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATH-LSEL--PSGL-VGLSTLKKLVLSANKFENL  316 (606)
T ss_dssp             CCCGGGGGGGGGSEEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSC-CSCC--CSSC-CSCTTCCEEECTTCCCSBG
T ss_pred             ccChhHhchhhcCceeEEEeecCccCccC-HHHhccccCCCEEeccCCc-cCCC--Chhh-cccccCCEEECccCCcCcC
Confidence                                 11111110 0012334455555555421 1111  1111 1234555555544322111


Q ss_pred             ccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194          300 VVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR  379 (540)
Q Consensus       300 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  379 (540)
                      ...   .+..+++|++|+++++.....++..    ....+++|+.|+++++. ++........ .+.+++|++|++++| 
T Consensus       317 ~~~---~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~l~~L~~L~l~~n-  386 (606)
T 3t6q_A          317 CQI---SASNFPSLTHLSIKGNTKRLELGTG----CLENLENLRELDLSHDD-IETSDCCNLQ-LRNLSHLQSLNLSYN-  386 (606)
T ss_dssp             GGG---CGGGCTTCSEEECCSCSSCCBCCSS----TTTTCTTCCEEECCSSC-CCEEEESTTT-TTTCTTCCEEECCSC-
T ss_pred             chh---hhhccCcCCEEECCCCCcccccchh----hhhccCcCCEEECCCCc-cccccCcchh-cccCCCCCEEECCCC-
Confidence            111   1334555555555555321112110    23455666666665532 3332210111 455666666666665 


Q ss_pred             CCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCC--CCCCccCCCCccEEEEccCCCccc
Q 009194          380 KLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP--VHQGIYCCQNLTKVTVWSCHRLKY  457 (540)
Q Consensus       380 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l~~C~~l~~  457 (540)
                      .++.+++ ..+..+++|++|+++++......+......++.|..+ .+..+.-.  .+..+..+++|+.|++++++--..
T Consensus       387 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  464 (606)
T 3t6q_A          387 EPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG  464 (606)
T ss_dssp             SCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE-ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred             cCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE-ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence            3444422 2245566677777766533222222224444555554 44443211  122344567777777777642221


Q ss_pred             -ccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccC
Q 009194          458 -LFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWL  510 (540)
Q Consensus       458 -l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  510 (540)
                       ++....+..+++|++|++++|. ++.+.. ..      +..+++|++|+++++
T Consensus       465 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~------~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          465 NIQKTNSLQTLGRLEILVLSFCD-LSSIDQ-HA------FTSLKMMNHVDLSHN  510 (606)
T ss_dssp             EECSSCGGGGCTTCCEEECTTSC-CCEECT-TT------TTTCTTCCEEECCSS
T ss_pred             ccccchhhccCCCccEEECCCCc-cCccCh-hh------hccccCCCEEECCCC
Confidence             1222345666777777777763 333321 11      234667777777655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=7.2e-29  Score=261.58  Aligned_cols=444  Identities=16%  Similarity=0.136  Sum_probs=274.6

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~  117 (540)
                      .+.++.++..+..+|... .+++++|++++|.+  ..++...|.++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus         9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCccccCCCc-cccccEEEccCCcc--CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            456777777778888733 35799999999987  5555555789999999999999998764 5789999999999999


Q ss_pred             CccCC--cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCcccc
Q 009194          118 CELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      |.++.  +..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+...
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred             CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcccee
Confidence            99887  4789999999999999999998876 58999999999999998333 35666 89999999999999987621


Q ss_pred             cccCCCccchhhccCCCCc----cEEEeecCCCCCCCccccc-cCccEEEEEecCCCC----------------------
Q 009194          194 KVEGGSNASLVELERLTEL----TTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPE----------------------  246 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~----------------------  246 (540)
                              ....++.+++|    +.+++++|....++..... .+|+.+.+.......                      
T Consensus       165 --------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          165 --------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             --------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred             --------cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecccc
Confidence                    12344555555    7999999997766655443 567777665431000                      


Q ss_pred             ------------CC-----------------------CCccccccccccEEEEeccccccccccchhhhhhhcccceeee
Q 009194          247 ------------DE-----------------------FDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWL  291 (540)
Q Consensus       247 ------------~~-----------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  291 (540)
                                  ..                       .......+++|+.|++.++.- ..+  +.+.. .+ +|+.|.+
T Consensus       237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l--~~~~~-~~-~L~~L~l  311 (570)
T 2z63_A          237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERV--KDFSY-NF-GWQHLEL  311 (570)
T ss_dssp             CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSC--CBCCS-CC-CCSEEEE
T ss_pred             ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhh--hhhhc-cC-CccEEee
Confidence                        00                       000022234444444444211 111  11111 11 4444444


Q ss_pred             ccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCC
Q 009194          292 ETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR  371 (540)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~  371 (540)
                      .++...     .++ ...+++|+.|.+.++......       ....+++|+.|+++++. ++........ ...+++|+
T Consensus       312 ~~n~~~-----~l~-~~~l~~L~~L~l~~n~~~~~~-------~~~~~~~L~~L~l~~n~-l~~~~~~~~~-~~~~~~L~  376 (570)
T 2z63_A          312 VNCKFG-----QFP-TLKLKSLKRLTFTSNKGGNAF-------SEVDLPSLEFLDLSRNG-LSFKGCCSQS-DFGTTSLK  376 (570)
T ss_dssp             ESCBCS-----SCC-BCBCSSCCEEEEESCBSCCBC-------CCCBCTTCCEEECCSSC-CBEEEEEEHH-HHTCSCCC
T ss_pred             ccCccc-----ccC-cccccccCEEeCcCCcccccc-------ccccCCCCCEEeCcCCc-cCcccccccc-ccccCccC
Confidence            443221     122 234556666666555321111       22556667777776543 3322100000 34567777


Q ss_pred             eEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCC--CCCCccCCCCccEEEE
Q 009194          372 IINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP--VHQGIYCCQNLTKVTV  449 (540)
Q Consensus       372 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l  449 (540)
                      +|++++| .++.+++.  +..+++|++|++++|.-....+...+..++.|..+ .+..+...  .+.....+++|+.|++
T Consensus       377 ~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          377 YLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             EEECCSC-SEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE-ECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             EEECCCC-cccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEE-eCcCCcccccchhhhhcCCcCcEEEC
Confidence            7777775 35544332  45667777777777543222222334455555555 44444321  2233456778888888


Q ss_pred             ccCCCc-ccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCC-------CCCCCCCCc
Q 009194          450 WSCHRL-KYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK-------LSSFASPED  521 (540)
Q Consensus       450 ~~C~~l-~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~-------L~~~~~l~~  521 (540)
                      .+|.-. ..++  ..+..+++|++|++++|. ++.+.. +.      +..+++|++|+++++.-       +..+++|+.
T Consensus       453 ~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~~-~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          453 AGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQLSP-TA------FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             TTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEECT-TT------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCcCccccch--hhhhcccCCCEEECCCCc-cccCCh-hh------hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            877532 1232  345677888888888774 333311 11      33578888888887632       344567788


Q ss_pred             eEeecCC
Q 009194          522 VIHTEMQ  528 (540)
Q Consensus       522 l~i~~c~  528 (540)
                      +++.+++
T Consensus       523 L~l~~N~  529 (570)
T 2z63_A          523 IWLHTNP  529 (570)
T ss_dssp             EECCSSC
T ss_pred             EEecCCc
Confidence            8887753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.7e-29  Score=270.49  Aligned_cols=452  Identities=13%  Similarity=0.041  Sum_probs=206.4

Q ss_pred             cCCCeEEEccCCCCCCCCC-----cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCC
Q 009194           36 QKDPIAISLPHRDIQELPE-----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL  110 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L  110 (540)
                      .+++++|++++|.+.....     ..++++|++|++++|.+ ....+   +.++++|++|++++|.+...+..++++++|
T Consensus       150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L  225 (768)
T 3rgz_A          150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSAL  225 (768)
T ss_dssp             CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE-ESCCB---CTTCTTCCEEECCSSCCCSCCCBCTTCCSC
T ss_pred             CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc-cccCC---cccCCcCCEEECcCCcCCCCCcccccCCCC
Confidence            3455666666555532221     12444555555554443 22111   134444444444444444322224444444


Q ss_pred             cEEEcCCCccCC--cccccCCCCCCEEEecCCCC----------------------c-ccchhcCCC-CCCCEEECCCCc
Q 009194          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNI----------------------N-QLPVEIGQL-TRLQLLDLSNCW  164 (540)
Q Consensus       111 ~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~----------------------~-~lp~~~~~l-~~L~~L~l~~~~  164 (540)
                      ++|++++|.++.  |..++++++|++|++++|.+                      . .+|..+... ++|++|++++|.
T Consensus       226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH  305 (768)
T ss_dssp             CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred             CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence            444444444442  34444444444444444433                      3 444444332 555555555555


Q ss_pred             cccccchhhhhcCCccceEEccCCCcccccccCCCccch-hhccCCCCccEEEeecCCCC-CCCccccc-c-CccEEEEE
Q 009194          165 WLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASL-VELERLTELTTLEIEVPDAE-ILPPDFVS-V-ELQRYKIR  240 (540)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~-~L~~L~l~  240 (540)
                      ..+.+|.. ++++++|++|++++|.+..        ..+ ..+.++++|+.|++++|.+. .+|..+.. . +|+.|.++
T Consensus       306 l~~~~p~~-~~~l~~L~~L~L~~n~l~~--------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls  376 (768)
T 3rgz_A          306 FYGAVPPF-FGSCSLLESLALSSNNFSG--------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS  376 (768)
T ss_dssp             EEECCCGG-GGGCTTCCEEECCSSEEEE--------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred             CCCccchH-HhcCCCccEEECCCCcccC--------cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence            33344433 5555555555555554430        111 22566666777777666643 45554444 3 66666664


Q ss_pred             ecCC----CCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccC------------
Q 009194          241 IGDG----PEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHEL------------  304 (540)
Q Consensus       241 ~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------  304 (540)
                      .+..    +.+..   ...+++|+.|+++++.-...+  +.. ...+++|+.|++.++.-.......+            
T Consensus       377 ~N~l~~~~~~~~~---~~~~~~L~~L~L~~n~l~~~~--p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~  450 (768)
T 3rgz_A          377 SNNFSGPILPNLC---QNPKNTLQELYLQNNGFTGKI--PPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW  450 (768)
T ss_dssp             SSEEEEECCTTTT---CSTTCCCCEEECCSSEEEEEC--CGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CCCcCCCcChhhh---hcccCCccEEECCCCcccccc--CHH-HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence            3321    11100   011344555555442210010  111 1123444444444432111111110            


Q ss_pred             ---------ccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEE
Q 009194          305 ---------DDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINV  375 (540)
Q Consensus       305 ---------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l  375 (540)
                               ..+..+++|+.|+++++.-...++.     ....+++|+.|+++++.--..++..    .+.+++|++|++
T Consensus       451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-----~l~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L  521 (768)
T 3rgz_A          451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-----GLSNCTNLNWISLSNNRLTGEIPKW----IGRLENLAILKL  521 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-----GGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEEC
T ss_pred             CCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-----HHhcCCCCCEEEccCCccCCcCChH----HhcCCCCCEEEC
Confidence                     0123444555555555421111111     3445566666666654422233222    445666777777


Q ss_pred             eeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccce--------eeecc------------------
Q 009194          376 DSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF--------IEINA------------------  429 (540)
Q Consensus       376 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l--------~~i~~------------------  429 (540)
                      ++|.-...+|  ..+..+++|+.|++++|+-...++..... ...+..+        ..+.+                  
T Consensus       522 ~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          522 SNNSFSGNIP--AELGDCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             CSSCCEEECC--GGGGGCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             CCCcccCcCC--HHHcCCCCCCEEECCCCccCCcCChHHhc-ccchhhhhcccccccccccccccccccccccccccccc
Confidence            6653322332  22456677777777765544333321111 0000000        00000                  


Q ss_pred             --------------cC---C----CCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceecccc
Q 009194          430 --------------ED---D----PVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTT  488 (540)
Q Consensus       430 --------------~~---~----~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~  488 (540)
                                    ++   +    ..+.....+++|+.|+++++.--..+|  ..++++++|+.|+++++.--..++  +
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g~ip--~  674 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--KEIGSMPYLFILNLGHNDISGSIP--D  674 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC--GGGGGCTTCCEEECCSSCCCSCCC--G
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC--HHHhccccCCEEeCcCCccCCCCC--h
Confidence                          00   0    011223456778888888875333443  346778888888888864322322  1


Q ss_pred             ccCCCCccccccccceeecccCCC-------CCCCCCCCceEeecCC
Q 009194          489 TLGGRDEFKVFPKLHYLSLHWLPK-------LSSFASPEDVIHTEMQ  528 (540)
Q Consensus       489 ~~~~~~~~~~~~~L~~L~l~~~p~-------L~~~~~l~~l~i~~c~  528 (540)
                      .      +..++.|++|+++++.-       +..+++|+.+++++++
T Consensus       675 ~------l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          675 E------VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             G------GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             H------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            1      34678888888886643       3455667888887774

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=8.6e-29  Score=269.09  Aligned_cols=424  Identities=14%  Similarity=0.042  Sum_probs=215.4

Q ss_pred             cCCCeEEEccCCCCC-CCCC---cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-Ccc---cccC
Q 009194           36 QKDPIAISLPHRDIQ-ELPE---RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSS---LGRL  107 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~-~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~---l~~l  107 (540)
                      .+++++|++++|.+. .+|.   +.++++|++|++++|.. ....+..++.++++|++|++++|.+... |..   +.++
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC  177 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEE-ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred             CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCcc-CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence            456777777777663 3443   33667777777777655 3333333334666666666666666542 222   4556


Q ss_pred             CCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccC
Q 009194          108 INLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (540)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (540)
                      ++|++|++++|.+.....+.++++|++|++++|.+...+..++.+++|++|++++|...+.+|.. ++.+++|++|++++
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISS  256 (768)
T ss_dssp             TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCS
T ss_pred             CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCC
Confidence            66666666666655432335566666666666655543223666666666666666533334433 56666666666666


Q ss_pred             CCcccccccCC--------------CccchhhccC-CCCccEEEeecCCCC-CCCccccc-cCccEEEEEecCCCCCCCC
Q 009194          188 GFSGWEKVEGG--------------SNASLVELER-LTELTTLEIEVPDAE-ILPPDFVS-VELQRYKIRIGDGPEDEFD  250 (540)
Q Consensus       188 ~~~~~~~~~~~--------------~~~~~~~l~~-l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~  250 (540)
                      |.+........              ....+..+.. +++|++|++++|.+. .+|..+.. ++|+.|.++.+........
T Consensus       257 n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~  336 (768)
T 3rgz_A          257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM  336 (768)
T ss_dssp             SCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred             CcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence            55431100000              0011112222 245555555555433 33333333 4555555533221100000


Q ss_pred             ccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecc
Q 009194          251 PLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGS  330 (540)
Q Consensus       251 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  330 (540)
                      .....+++|++|+++++.-..  ..+..+....++|+.|++.++.-.......+. ...+++|++|++++|. ++.... 
T Consensus       337 ~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~p-  411 (768)
T 3rgz_A          337 DTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTLDLSSNNFSGPILPNLC-QNPKNTLQELYLQNNG-FTGKIP-  411 (768)
T ss_dssp             HHHTTCTTCCEEECCSSEEEE--CCCTTHHHHTTTCSEEECCSSEEEEECCTTTT-CSTTCCCCEEECCSSE-EEEECC-
T ss_pred             HHHhcCCCCCEEeCcCCccCc--cccHHHHhhhcCCcEEEccCCCcCCCcChhhh-hcccCCccEEECCCCc-cccccC-
Confidence            012344555555555522100  11222222223566666655432222111111 1225677777777773 332211 


Q ss_pred             ccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccc
Q 009194          331 VRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMI  410 (540)
Q Consensus       331 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  410 (540)
                         .....+++|+.|+++++. ++......   .+.+++|++|++++|.-...+ +. .+..+++|++|++++|. ++..
T Consensus       412 ---~~l~~l~~L~~L~Ls~N~-l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~-p~-~~~~l~~L~~L~L~~N~-l~~~  481 (768)
T 3rgz_A          412 ---PTLSNCSELVSLHLSFNY-LSGTIPSS---LGSLSKLRDLKLWLNMLEGEI-PQ-ELMYVKTLETLILDFND-LTGE  481 (768)
T ss_dssp             ---GGGGGCTTCCEEECCSSE-EESCCCGG---GGGCTTCCEEECCSSCCCSCC-CG-GGGGCTTCCEEECCSSC-CCSC
T ss_pred             ---HHHhcCCCCCEEECcCCc-ccCcccHH---HhcCCCCCEEECCCCcccCcC-CH-HHcCCCCceEEEecCCc-ccCc
Confidence               145567778888887753 33222221   556777888888776433233 22 34567778888887754 3333


Q ss_pred             cccCCCCCCCccceeeecccCCC--CCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccc
Q 009194          411 IGPDMEKPPTTQGFIEINAEDDP--VHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR  479 (540)
Q Consensus       411 ~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~  479 (540)
                      .....+.++.|..+ .+.++.-.  .+..+..+++|+.|++++|.-...+|  ..+.++++|+.|++++|+
T Consensus       482 ~p~~l~~l~~L~~L-~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          482 IPSGLSNCTNLNWI-SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CCGGGGGCTTCCEE-ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGGCTTCCEEECCSSE
T ss_pred             CCHHHhcCCCCCEE-EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC--HHHcCCCCCCEEECCCCc
Confidence            33444555666655 55554322  33445577788888888875444443  345677788888877764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=9.2e-29  Score=259.50  Aligned_cols=421  Identities=16%  Similarity=0.147  Sum_probs=247.0

Q ss_pred             hhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc
Q 009194           26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS  103 (540)
Q Consensus        26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  103 (540)
                      .++++|. .+.+.++++++++|.+..++.  +.++++|++|++++|.+  ..++.+.|.++++|++|++++|.+..++..
T Consensus        16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred             ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCHH
Confidence            4445554 346789999999998876643  44889999999999986  455555568899999999999999887654


Q ss_pred             -cccCCCCcEEEcCCCccCC---cccccCCCCCCEEEecCCC-Ccccc-hhcCCCCCCCEEECCCCccccccchhhhhcC
Q 009194          104 -LGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSN-INQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKL  177 (540)
Q Consensus       104 -l~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  177 (540)
                       ++++++|++|++++|.++.   +..++++++|++|++++|. +..+| ..+.++++|++|++++|......|.. ++.+
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l  171 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSI  171 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTC
T ss_pred             HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhcc
Confidence             8899999999999998774   4778899999999999986 66776 46888999999999988844445554 8889


Q ss_pred             CccceEEccCCCcccccccCCCccchh-hccCCCCccEEEeecCCCCCCC---cccc--ccCccEEEEEecCCCCCCC--
Q 009194          178 SQLEELYMGNGFSGWEKVEGGSNASLV-ELERLTELTTLEIEVPDAEILP---PDFV--SVELQRYKIRIGDGPEDEF--  249 (540)
Q Consensus       178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~---~~~~--~~~L~~L~l~~~~~~~~~~--  249 (540)
                      ++|++|+++++....         ... .++.+++|+.|++++|.+..++   ..+.  .++|+.|.+..........  
T Consensus       172 ~~L~~L~l~~n~~~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  242 (549)
T 2z81_A          172 RDIHHLTLHLSESAF---------LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE  242 (549)
T ss_dssp             SEEEEEEEECSBSTT---------HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred             ccCceEecccCcccc---------cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence            999999998876541         122 2356889999999998866542   2222  2778888886543211000  


Q ss_pred             -CccccccccccEEEEeccccccccccc----hhhhhhhcccceeeeccccCccccc-ccCc-cCCCCccccEEeecccc
Q 009194          250 -DPLLVKSEASRLMMLKGIKKVSILQEN----DGTKMLLQRTEDLWLETLEGVQSVV-HELD-DGEGFPRLKRLLVTDCS  322 (540)
Q Consensus       250 -~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~-~~~~~~~L~~L~l~~~~  322 (540)
                       ......+++|+.+++.+|.- ..+...    ......+++++.|.+.++..-.... ..+. .....++|+.|.++++ 
T Consensus       243 l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-  320 (549)
T 2z81_A          243 LLKLLRYILELSEVEFDDCTL-NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-  320 (549)
T ss_dssp             HHGGGGGCTTCCEEEEESCEE-ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-
T ss_pred             HHHHhhhhccccccccccccc-cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-
Confidence             00124567888888887442 111000    0011224566666665543211100 0000 0112345666666665 


Q ss_pred             CceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccC-hHHHhhcccccEEEE
Q 009194          323 EILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNLLRLQKVKV  401 (540)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l  401 (540)
                      +++.++..    ....+++|+.|+++++.--..++..... .+.+++|++|++++| .++.++. ...+..+++|++|++
T Consensus       321 ~l~~ip~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~L  394 (549)
T 2z81_A          321 KVFLVPCS----FSQHLKSLEFLDLSENLMVEEYLKNSAC-KGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDI  394 (549)
T ss_dssp             CCCCCCHH----HHHHCTTCCEEECCSSCCCHHHHHHHTC-TTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEEC
T ss_pred             ccccCCHH----HHhcCccccEEEccCCccccccccchhh-hhccccCcEEEccCC-cccccccchhhhhcCCCCCEEEC
Confidence            34433211    1134666667766664422222111000 445666677766665 4555432 123455666666666


Q ss_pred             ccccccccccccCCCCCCCccceeeecccCCCCCCC-ccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194          402 EDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQG-IYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC  478 (540)
Q Consensus       402 ~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~-~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C  478 (540)
                      ++| +++.++ ...+..+.|..+ .+..+.  .... ...+++|+.|++++| +++.++     .++++|++|+++++
T Consensus       395 s~N-~l~~lp-~~~~~~~~L~~L-~Ls~N~--l~~l~~~~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          395 SRN-TFHPMP-DSCQWPEKMRFL-NLSSTG--IRVVKTCIPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRN  461 (549)
T ss_dssp             TTC-CCCCCC-SCCCCCTTCCEE-ECTTSC--CSCCCTTSCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS
T ss_pred             CCC-CCccCC-hhhcccccccEE-ECCCCC--cccccchhcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCC
Confidence            664 444443 222333444444 333332  1110 111245555555555 233321     34455555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=5.1e-28  Score=253.87  Aligned_cols=442  Identities=14%  Similarity=0.107  Sum_probs=273.2

Q ss_pred             hcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC--CCcccccCCCC
Q 009194           35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLGRLINL  110 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L  110 (540)
                      ..+++++|++++|.+..++.  +.++++|++|++++|.+  ...+...+.++++|++|++++|.+..  .|..++++++|
T Consensus        48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  125 (549)
T 2z81_A           48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL  125 (549)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             cCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc--CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence            36789999999999977653  44899999999999987  66777777999999999999999985  46788999999


Q ss_pred             cEEEcCCCc-cCC-c-ccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEcc
Q 009194          111 QTLCLDWCE-LAD-I-AAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (540)
Q Consensus       111 ~~L~l~~~~-~~~-~-~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (540)
                      ++|++++|. +.. + ..+.++++|++|++++|.++. .|..++.+++|++|+++.+. ...++...++.+++|+.|+++
T Consensus       126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~  204 (549)
T 2z81_A          126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELR  204 (549)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEE
T ss_pred             cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEcc
Confidence            999999998 555 4 689999999999999998884 77889999999999999987 667777656789999999999


Q ss_pred             CCCcccccccCCCccchhhccCCCCccEEEeecCCCCC-----CCccccc-cCccEEEEEecCCCC---CC--CCccccc
Q 009194          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI-----LPPDFVS-VELQRYKIRIGDGPE---DE--FDPLLVK  255 (540)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~~~~-~~L~~L~l~~~~~~~---~~--~~~~~~~  255 (540)
                      +|.+.....     ........+++|+.|++.++....     ++..... .+|+.+.+..+....   +.  .......
T Consensus       205 ~n~l~~~~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  279 (549)
T 2z81_A          205 DTNLARFQF-----SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE  279 (549)
T ss_dssp             SCBCTTCCC-----CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred             CCccccccc-----cccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence            998762210     011122345667777777665321     1111111 556666665433111   10  0111334


Q ss_pred             cccccEEEEeccccccccc---cchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecccc
Q 009194          256 SEASRLMMLKGIKKVSILQ---ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR  332 (540)
Q Consensus       256 ~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  332 (540)
                      .++++.|.+.+..- ....   .........++|+.|.+.+.. ++.+...+  +..+++|++|+++++. ++..... .
T Consensus       280 l~~L~~L~l~~~~i-~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~--~~~l~~L~~L~Ls~N~-l~~~~~~-~  353 (549)
T 2z81_A          280 LGKVETVTIRRLHI-PQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF--SQHLKSLEFLDLSENL-MVEEYLK-N  353 (549)
T ss_dssp             CTTCCEEEEESCBC-SCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH--HHHCTTCCEEECCSSC-CCHHHHH-H
T ss_pred             hccccccccccccc-chhhhcccchhhhhhcccceEEEeccCc-cccCCHHH--HhcCccccEEEccCCc-ccccccc-c
Confidence            55666666655211 0000   001112233556666665543 22211110  1245666666666653 2211000 0


Q ss_pred             ccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccc
Q 009194          333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG  412 (540)
Q Consensus       333 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  412 (540)
                      ....+.+++|+.|+++++ .++.++..+.. .+.+++|++|++++| +++.+|.  .+..+++|++|++++|. ++.++.
T Consensus       354 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~~L~~L~Ls~N~-l~~l~~  427 (549)
T 2z81_A          354 SACKGAWPSLQTLVLSQN-HLRSMQKTGEI-LLTLKNLTSLDISRN-TFHPMPD--SCQWPEKMRFLNLSSTG-IRVVKT  427 (549)
T ss_dssp             HTCTTSSTTCCEEECTTS-CCCCHHHHHHH-GGGCTTCCEEECTTC-CCCCCCS--CCCCCTTCCEEECTTSC-CSCCCT
T ss_pred             hhhhhccccCcEEEccCC-cccccccchhh-hhcCCCCCEEECCCC-CCccCCh--hhcccccccEEECCCCC-cccccc
Confidence            002345566666666653 34433310000 344666666666665 4555543  13445666666666643 443321


Q ss_pred             cCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCC
Q 009194          413 PDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGG  492 (540)
Q Consensus       413 ~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~  492 (540)
                      ..   .++|..+ .++.+.  .......+++|+.|+++++ +++.++.   ...+++|++|+++++ .++.++. +.   
T Consensus       428 ~~---~~~L~~L-~Ls~N~--l~~~~~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~~-~~---  492 (549)
T 2z81_A          428 CI---PQTLEVL-DVSNNN--LDSFSLFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVPD-GI---  492 (549)
T ss_dssp             TS---CTTCSEE-ECCSSC--CSCCCCCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCCT-TG---
T ss_pred             hh---cCCceEE-ECCCCC--hhhhcccCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcCH-HH---
Confidence            11   1233333 333332  3333456889999999998 6777765   246899999999987 4555432 21   


Q ss_pred             CCccccccccceeecccCCCCC
Q 009194          493 RDEFKVFPKLHYLSLHWLPKLS  514 (540)
Q Consensus       493 ~~~~~~~~~L~~L~l~~~p~L~  514 (540)
                         +..+++|++|++.++|-..
T Consensus       493 ---~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          493 ---FDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             ---GGGCTTCCEEECCSSCBCC
T ss_pred             ---HhcCcccCEEEecCCCccC
Confidence               3468899999998887533

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.7e-27  Score=256.34  Aligned_cols=177  Identities=21%  Similarity=0.207  Sum_probs=145.5

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~  118 (540)
                      +.++.+++.+..+|.... +++++|++++|.+  ..++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus         7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCccccccccC-CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            568888888888887443 7999999999986  566666679999999999999999875 677899999999999999


Q ss_pred             ccCC-c-ccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          119 ELAD-I-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      .++. + ..++++++|++|++++|.+..+| ..++++++|++|++++|. +...+...++++++|++|++++|.+.... 
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-  161 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALK-  161 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBC-
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccC-
Confidence            9988 5 47999999999999999998877 468999999999999998 44444444789999999999998775211 


Q ss_pred             cCCCccchhh--ccCCCCccEEEeecCCCCCCCcc
Q 009194          196 EGGSNASLVE--LERLTELTTLEIEVPDAEILPPD  228 (540)
Q Consensus       196 ~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~  228 (540)
                             ...  ...+++|+.|++++|.+..++..
T Consensus       162 -------~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          162 -------SEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             -------HHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             -------HHHhhccccccccEEECCCCcccccChh
Confidence                   122  23568899999999987665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=7.4e-29  Score=268.15  Aligned_cols=397  Identities=15%  Similarity=0.106  Sum_probs=235.8

Q ss_pred             CCCeEEEccCCCC-CCCCCcC-CCCCccEEEc-ccCCC------C-----------------------------------
Q 009194           37 KDPIAISLPHRDI-QELPERL-QCPNLQLFLL-YTEGN------G-----------------------------------   72 (540)
Q Consensus        37 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l-~~~~~------~-----------------------------------   72 (540)
                      .++..|+++++.+ ..+|+.. ++++|++|++ ++|..      .                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            6799999999999 4566644 9999999999 55521      0                                   


Q ss_pred             ----------------------------------CccccHHHHhcCccCcEEEcCCCCCCC------------------C
Q 009194           73 ----------------------------------PMQVSDHFFEGMEGLKVLQFPGIGSSS------------------L  100 (540)
Q Consensus        73 ----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l  100 (540)
                                                        ...+|.. +.++++|++|++++|.+..                  +
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                              0004444 5788888899988888877                  8


Q ss_pred             Ccccc--cCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCC-Ccc--cchhcCCCC-------CCCEEECCCCccc
Q 009194          101 PSSLG--RLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSN-INQ--LPVEIGQLT-------RLQLLDLSNCWWL  166 (540)
Q Consensus       101 ~~~l~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~-~~~--lp~~~~~l~-------~L~~L~l~~~~~~  166 (540)
                      |..++  ++++|++|++++|.+..  |..++++++|++|++++|. ++.  +|..++.++       +|++|++++|. +
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L  560 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L  560 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence            88877  88889999998888654  6888888889999988886 763  777666554       88889888888 5


Q ss_pred             cccch--hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cC-ccEEEEEec
Q 009194          167 EVIAP--NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VE-LQRYKIRIG  242 (540)
Q Consensus       167 ~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~  242 (540)
                      ..+|.  . ++++++|+.|++++|.+.         ..+ .++.+++|+.|++++|.+..+|..+.. ++ |+.|.++.+
T Consensus       561 ~~ip~~~~-l~~L~~L~~L~Ls~N~l~---------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          561 EEFPASAS-LQKMVKLGLLDCVHNKVR---------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             CBCCCHHH-HTTCTTCCEEECTTSCCC---------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred             CccCChhh-hhcCCCCCEEECCCCCcc---------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence            57776  4 788888888888888765         222 677888888888888888777777655 66 888888766


Q ss_pred             CCCCCCCCccccccccccEEEEeccccccccccch-hhh-hhhcccceeeeccccCcccccccCccCCCCccccEEeecc
Q 009194          243 DGPEDEFDPLLVKSEASRLMMLKGIKKVSILQEND-GTK-MLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD  320 (540)
Q Consensus       243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  320 (540)
                      .+...+........++|+.|+++++.-...++... ... ...++|+.|++.++.-. .+...+  +..+++|+.|++++
T Consensus       630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~--~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL--FATGSPISTIILSN  706 (876)
T ss_dssp             CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH--HHTTCCCSEEECCS
T ss_pred             CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH--HccCCCCCEEECCC
Confidence            54433211111222347777777632111111000 000 01235555555544321 111110  22456666666666


Q ss_pred             ccCceeeeccccccc---cccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhccccc
Q 009194          321 CSEILHIVGSVRRVR---CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQ  397 (540)
Q Consensus       321 ~~~l~~~~~~~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  397 (540)
                      + +++.++.......   ...+++|+.|+++++ .++.++....  ...+++|+.|++++| .++.+|..  +..+++|+
T Consensus       707 N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~--~~~l~~L~~L~Ls~N-~L~~lp~~--l~~L~~L~  779 (876)
T 4ecn_A          707 N-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR--ATTLPYLSNMDVSYN-CFSSFPTQ--PLNSSQLK  779 (876)
T ss_dssp             C-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGS--TTTCTTCCEEECCSS-CCSSCCCG--GGGCTTCC
T ss_pred             C-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhh--hccCCCcCEEEeCCC-CCCccchh--hhcCCCCC
Confidence            5 3443322110000   112236666666653 4444443210  125566666666664 44444322  34566666


Q ss_pred             EEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEec
Q 009194          398 KVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN  477 (540)
Q Consensus       398 ~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~  477 (540)
                      .|++++++.+..-.         +         ....+..+..+++|+.|++++|.- +.+|.. +   .++|+.|++++
T Consensus       780 ~L~Ls~N~~ls~N~---------l---------~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l---~~~L~~LdLs~  836 (876)
T 4ecn_A          780 AFGIRHQRDAEGNR---------I---------LRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-L---TPQLYILDIAD  836 (876)
T ss_dssp             EEECCCCBCTTCCB---------C---------CCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-C---CSSSCEEECCS
T ss_pred             EEECCCCCCccccc---------c---------cccChHHHhcCCCCCEEECCCCCC-CccCHh-h---cCCCCEEECCC
Confidence            66665543221100         0         000223344566677777776643 555432 1   15677777766


Q ss_pred             cc
Q 009194          478 CR  479 (540)
Q Consensus       478 C~  479 (540)
                      |+
T Consensus       837 N~  838 (876)
T 4ecn_A          837 NP  838 (876)
T ss_dssp             CT
T ss_pred             CC
Confidence            65

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=4e-29  Score=265.57  Aligned_cols=218  Identities=14%  Similarity=0.138  Sum_probs=146.1

Q ss_pred             CCCeEEEccCCCC-CCCCCcC-CCCCccEEEcccCCC-------------------------------------------
Q 009194           37 KDPIAISLPHRDI-QELPERL-QCPNLQLFLLYTEGN-------------------------------------------   71 (540)
Q Consensus        37 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~~-------------------------------------------   71 (540)
                      .++++|+++++.+ ..+|... ++++|++|++++|..                                           
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            5799999999998 4566544 999999999998842                                           


Q ss_pred             ---------------------------------CCccccHHHHhcCccCcEEEcCCCCCCC------------------C
Q 009194           72 ---------------------------------GPMQVSDHFFEGMEGLKVLQFPGIGSSS------------------L  100 (540)
Q Consensus        72 ---------------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l  100 (540)
                                                       ....+|.. ++++++|++|++++|.++.                  +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                                             00123333 4677777777777777776                  7


Q ss_pred             Ccccc--cCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCC-Cc--ccchhcCCC------CCCCEEECCCCcccc
Q 009194          101 PSSLG--RLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSN-IN--QLPVEIGQL------TRLQLLDLSNCWWLE  167 (540)
Q Consensus       101 ~~~l~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~-~~--~lp~~~~~l------~~L~~L~l~~~~~~~  167 (540)
                      |..++  ++++|++|++++|.+..  |..++++++|++|++++|. ++  .+|..++.+      ++|++|++++|. +.
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence            77777  77777777777777554  6777777777777777776 66  377766665      777777777777 44


Q ss_pred             ccch--hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cC-ccEEEEEecC
Q 009194          168 VIAP--NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VE-LQRYKIRIGD  243 (540)
Q Consensus       168 ~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~~  243 (540)
                      .+|.  . ++++++|+.|++++|.+.         ..++.++.+++|+.|++++|.+..+|..+.. ++ |+.|.++.+.
T Consensus       319 ~ip~~~~-l~~l~~L~~L~L~~N~l~---------g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~  388 (636)
T 4eco_A          319 TFPVETS-LQKMKKLGMLECLYNQLE---------GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK  388 (636)
T ss_dssp             SCCCHHH-HTTCTTCCEEECCSCCCE---------EECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC
T ss_pred             ccCchhh-hccCCCCCEEeCcCCcCc---------cchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc
Confidence            6765  4 677777777777777654         1112566677777777777776666666555 55 7777776555


Q ss_pred             CCCCCCCccccccccccEEEEec
Q 009194          244 GPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       244 ~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      +...+.......+++|+.|++++
T Consensus       389 l~~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          389 LKYIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             CSSCCSCCCTTCSSCEEEEECCS
T ss_pred             CcccchhhhhcccCccCEEECcC
Confidence            43221111111233566666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=2.5e-27  Score=260.16  Aligned_cols=166  Identities=21%  Similarity=0.280  Sum_probs=136.0

Q ss_pred             cCcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC
Q 009194           22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS   99 (540)
Q Consensus        22 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   99 (540)
                      .....++.+|.  .++++++|++++|.+..+..  +.++++|++|++++|.. ...++.+.|.++++|++|++++|.+..
T Consensus        11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~   87 (844)
T 3j0a_A           11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYF   87 (844)
T ss_dssp             ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred             ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcc
Confidence            34455667776  78999999999999976643  44999999999999976 566655667999999999999999986


Q ss_pred             C-CcccccCCCCcEEEcCCCccCC--ccc--ccCCCCCCEEEecCCCCcccc--hhcCCCCCCCEEECCCCccccccchh
Q 009194          100 L-PSSLGRLINLQTLCLDWCELAD--IAA--IGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAPN  172 (540)
Q Consensus       100 l-~~~l~~l~~L~~L~l~~~~~~~--~~~--i~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~  172 (540)
                      + |..++++++|++|++++|.+++  +..  ++++++|++|++++|.+..++  ..++++++|++|++++|......+..
T Consensus        88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~  167 (844)
T 3j0a_A           88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE  167 (844)
T ss_dssp             ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred             cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence            5 8889999999999999999875  444  999999999999999888653  56899999999999998843334443


Q ss_pred             hhhcC--CccceEEccCCCcc
Q 009194          173 VISKL--SQLEELYMGNGFSG  191 (540)
Q Consensus       173 ~l~~l--~~L~~L~l~~~~~~  191 (540)
                       ++.+  ++|+.|++++|.+.
T Consensus       168 -l~~l~~~~L~~L~L~~n~l~  187 (844)
T 3j0a_A          168 -LEPLQGKTLSFFSLAANSLY  187 (844)
T ss_dssp             -GHHHHHCSSCCCEECCSBSC
T ss_pred             -cccccCCccceEECCCCccc
Confidence             6666  78888888887665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=5.1e-27  Score=240.63  Aligned_cols=342  Identities=18%  Similarity=0.195  Sum_probs=238.5

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      .++++++++.++.+..++....+++|++|++++|.+  ..++.  +.++++|++|++++|.+..++. +.++++|++|++
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  119 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence            567999999999888888877899999999999986  44554  6889999999999999888776 889999999999


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      ++|.++....+.++++|++|++++|.+..++. ++.+++|++|++++ . ....+.  ++++++|+.|++++|.+.    
T Consensus       120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~----  190 (466)
T 1o6v_A          120 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVS----  190 (466)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred             CCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCC----
Confidence            99988884448899999999999998887764 88899999999864 3 344444  788999999999988765    


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccccccccc
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE  275 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (540)
                            .+..+..+++|+.|++++|....++.....++|+.|.++.+.....   +...                     
T Consensus       191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~---------------------  240 (466)
T 1o6v_A          191 ------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---GTLA---------------------  240 (466)
T ss_dssp             ------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGG---------------------
T ss_pred             ------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---hhhh---------------------
Confidence                  1245778889999999988866554311114555555543322211   1122                     


Q ss_pred             chhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccc
Q 009194          276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET  355 (540)
Q Consensus       276 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  355 (540)
                            .+++|+.|++.++.- ...    .++..+++|+.|+++++ .++.+.      ....+++|+.|+++++ .++.
T Consensus       241 ------~l~~L~~L~l~~n~l-~~~----~~~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~L~~n-~l~~  301 (466)
T 1o6v_A          241 ------SLTNLTDLDLANNQI-SNL----APLSGLTKLTELKLGAN-QISNIS------PLAGLTALTNLELNEN-QLED  301 (466)
T ss_dssp             ------GCTTCSEEECCSSCC-CCC----GGGTTCTTCSEEECCSS-CCCCCG------GGTTCTTCSEEECCSS-CCSC
T ss_pred             ------cCCCCCEEECCCCcc-ccc----hhhhcCCCCCEEECCCC-ccCccc------cccCCCccCeEEcCCC-cccC
Confidence                  245555555554432 111    11456777888888777 343332      3556778888888774 3444


Q ss_pred             cccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCC
Q 009194          356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVH  435 (540)
Q Consensus       356 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~  435 (540)
                      ++.     .+.+++|++|++++| .++..++   ...+++|++|++++| .+++++                        
T Consensus       302 ~~~-----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~------------------------  347 (466)
T 1o6v_A          302 ISP-----ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS------------------------  347 (466)
T ss_dssp             CGG-----GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG------------------------
T ss_pred             chh-----hcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch------------------------
Confidence            432     456788888888886 4666543   457788888888876 444331                        


Q ss_pred             CCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccc
Q 009194          436 QGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR  479 (540)
Q Consensus       436 ~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~  479 (540)
                       .+..+++|+.|++.+|+ ++.+++   ...+++|++|++++|+
T Consensus       348 -~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          348 -SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA  386 (466)
T ss_dssp             -GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred             -hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence             23346788888888874 444432   5777888888888874

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=253.49  Aligned_cols=171  Identities=19%  Similarity=0.155  Sum_probs=136.3

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCC-CCC-CcccccCCCCcEEEcCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGS-SSL-PSSLGRLINLQTLCLDW  117 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l-~~~l~~l~~L~~L~l~~  117 (540)
                      +.++.+++.+..+|.  -.+++++|++++|.+  ..+....|.++++|++|++++|.. ..+ |..++++++|++|++++
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            577888888999998  668999999999987  444444468999999999999954 455 67899999999999999


Q ss_pred             CccCC--cccccCCCCCCEEEecCCCCcc-cchh--cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194          118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (540)
Q Consensus       118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (540)
                      |.+..  |..++++++|++|++++|.+.. +|..  ++++++|++|++++|......+...++++++|++|++++|.+..
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            99886  6899999999999999998874 5555  89999999999999984443343348999999999999997752


Q ss_pred             ccccCCCccchhhccCC--CCccEEEeecCCC
Q 009194          193 EKVEGGSNASLVELERL--TELTTLEIEVPDA  222 (540)
Q Consensus       193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~  222 (540)
                      .        ....+..+  ++|+.|+++.|..
T Consensus       163 ~--------~~~~l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          163 V--------CEHELEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             C--------CSGGGHHHHHCSSCCCEECCSBS
T ss_pred             e--------CHHHcccccCCccceEECCCCcc
Confidence            2        11233333  5677777776663

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=3.5e-26  Score=234.41  Aligned_cols=343  Identities=18%  Similarity=0.223  Sum_probs=252.6

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEE
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS  136 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~  136 (540)
                      .++++++|.+.++..  ..++.  +..+++|++|++++|.+..++. +..+++|++|++++|.+.....++++++|++|+
T Consensus        44 ~l~~l~~L~l~~~~i--~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  118 (466)
T 1o6v_A           44 DLDQVTTLQADRLGI--KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT  118 (466)
T ss_dssp             HHHTCCEEECCSSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred             HhccccEEecCCCCC--ccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence            467899999999886  45554  5789999999999999988877 889999999999999988833399999999999


Q ss_pred             ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (540)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (540)
                      +++|.++.++. +..+++|++|++++|. +..++.  ++.+++|+.|++.++..           ....++++++|+.|+
T Consensus       119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~~-----------~~~~~~~l~~L~~L~  183 (466)
T 1o6v_A          119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQVT-----------DLKPLANLTTLERLD  183 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESCC-----------CCGGGTTCTTCCEEE
T ss_pred             CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCccc-----------CchhhccCCCCCEEE
Confidence            99999988876 8999999999999987 666664  78999999999864321           123478899999999


Q ss_pred             eecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccC
Q 009194          217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG  296 (540)
Q Consensus       217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (540)
                      +++|.+..++.                         ...+++|+.|+++++.- ..+.   . ...+++|+.|.+.++.-
T Consensus       184 l~~n~l~~~~~-------------------------l~~l~~L~~L~l~~n~l-~~~~---~-~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          184 ISSNKVSDISV-------------------------LAKLTNLESLIATNNQI-SDIT---P-LGILTNLDELSLNGNQL  233 (466)
T ss_dssp             CCSSCCCCCGG-------------------------GGGCTTCSEEECCSSCC-CCCG---G-GGGCTTCCEEECCSSCC
T ss_pred             CcCCcCCCChh-------------------------hccCCCCCEEEecCCcc-cccc---c-ccccCCCCEEECCCCCc
Confidence            99988765543                         22334455555544211 1111   1 22356666666665432


Q ss_pred             cccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEe
Q 009194          297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD  376 (540)
Q Consensus       297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~  376 (540)
                       +..    ..+..+++|+.|+++++. ++.+.      ....+++|+.|+++++ .++.++.     ...+++|++|+++
T Consensus       234 -~~~----~~l~~l~~L~~L~l~~n~-l~~~~------~~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~L~  295 (466)
T 1o6v_A          234 -KDI----GTLASLTNLTDLDLANNQ-ISNLA------PLSGLTKLTELKLGAN-QISNISP-----LAGLTALTNLELN  295 (466)
T ss_dssp             -CCC----GGGGGCTTCSEEECCSSC-CCCCG------GGTTCTTCSEEECCSS-CCCCCGG-----GTTCTTCSEEECC
T ss_pred             -ccc----hhhhcCCCCCEEECCCCc-cccch------hhhcCCCCCEEECCCC-ccCcccc-----ccCCCccCeEEcC
Confidence             221    225678999999999984 44332      4677899999999885 4554443     5568999999999


Q ss_pred             eCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcc
Q 009194          377 SCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLK  456 (540)
Q Consensus       377 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~  456 (540)
                      +| +++.+++   +..+++|+.|++++| .++++.                         ....+++|+.|++++| +++
T Consensus       296 ~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~-------------------------~~~~l~~L~~L~l~~n-~l~  344 (466)
T 1o6v_A          296 EN-QLEDISP---ISNLKNLTYLTLYFN-NISDIS-------------------------PVSSLTKLQRLFFYNN-KVS  344 (466)
T ss_dssp             SS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCG-------------------------GGGGCTTCCEEECCSS-CCC
T ss_pred             CC-cccCchh---hcCCCCCCEEECcCC-cCCCch-------------------------hhccCccCCEeECCCC-ccC
Confidence            97 5777654   578899999999997 454432                         1345799999999998 566


Q ss_pred             cccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCC
Q 009194          457 YLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLP  511 (540)
Q Consensus       457 ~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p  511 (540)
                      .+   ..+.++++|++|++++|. +++...         ...+++|+.|.+.+++
T Consensus       345 ~~---~~l~~l~~L~~L~l~~n~-l~~~~~---------~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          345 DV---SSLANLTNINWLSAGHNQ-ISDLTP---------LANLTRITQLGLNDQA  386 (466)
T ss_dssp             CC---GGGTTCTTCCEEECCSSC-CCBCGG---------GTTCTTCCEEECCCEE
T ss_pred             Cc---hhhccCCCCCEEeCCCCc-cCccch---------hhcCCCCCEEeccCCc
Confidence            66   346789999999999985 444321         3468999999998774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.5e-26  Score=237.31  Aligned_cols=431  Identities=13%  Similarity=0.110  Sum_probs=261.7

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~  118 (540)
                      ++++++++.+..+|.... ++|++|++++|.+  ..++...|.++++|++|++++|.+..+ |..++++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYI--SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCC--CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcc--cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            678999999988887544 8999999999986  556656678999999999999999876 678899999999999999


Q ss_pred             ccCC-cccccCCCCCCEEEecCCCCcc--cchhcCCCCCCCEEECCCCccccccchhhhhcCCcc--ceEEccCCCcccc
Q 009194          119 ELAD-IAAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFSGWE  193 (540)
Q Consensus       119 ~~~~-~~~i~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~~  193 (540)
                      .++. |..  .+++|++|++++|.++.  +|..++++++|++|++++|. +...   .++.+++|  +.|++++|.+.. 
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l~~-  152 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGETYG-  152 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTTTT-
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccccc-
Confidence            9887 544  89999999999998875  56789999999999999887 3332   26777777  999999887620 


Q ss_pred             cccCCCccchhhccCCCC-ccEEEeecCCCC-CCCccccc--cCccEEEEEecCC-CCC----CCCccccccccccEEEE
Q 009194          194 KVEGGSNASLVELERLTE-LTTLEIEVPDAE-ILPPDFVS--VELQRYKIRIGDG-PED----EFDPLLVKSEASRLMML  264 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l~~~~~-~~~----~~~~~~~~~~~L~~L~l  264 (540)
                           ....+..+..+.. .-.+++.+|... .++.....  ++|+.+.++.+.. ..+    ...+....+++|+.|++
T Consensus       153 -----~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l  227 (520)
T 2z7x_B          153 -----EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL  227 (520)
T ss_dssp             -----SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred             -----cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence                 0011223333321 112333444322 22221111  4555555544320 000    00011334455566655


Q ss_pred             eccccccccccchhhh--hhhcccceeeeccccCcccccccCc--cCCCCcc--------------------------cc
Q 009194          265 KGIKKVSILQENDGTK--MLLQRTEDLWLETLEGVQSVVHELD--DGEGFPR--------------------------LK  314 (540)
Q Consensus       265 ~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~--------------------------L~  314 (540)
                      .++.- .... ..+..  ...++|+.|.+.++.-.......+.  ....+++                          |+
T Consensus       228 ~~~~l-~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~  305 (520)
T 2z7x_B          228 NNIET-TWNS-FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK  305 (520)
T ss_dssp             EEEEE-EHHH-HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred             ccccc-CHHH-HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence            54211 0000 00000  0123555555554432111111110  0023334                          55


Q ss_pred             EEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccC-hHHHhhc
Q 009194          315 RLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNL  393 (540)
Q Consensus       315 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l  393 (540)
                      .|.++++. +..+.      ....+++|+.|+++++. ++......   .+.+++|++|++++| +++.++. ...+..+
T Consensus       306 ~L~l~~n~-l~~~~------~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l  373 (520)
T 2z7x_B          306 NFTVSGTR-MVHML------CPSKISPFLHLDFSNNL-LTDTVFEN---CGHLTELETLILQMN-QLKELSKIAEMTTQM  373 (520)
T ss_dssp             EEEEESSC-CCCCC------CCSSCCCCCEEECCSSC-CCTTTTTT---CCCCSSCCEEECCSS-CCCBHHHHHHHHTTC
T ss_pred             EEEcCCCc-ccccc------chhhCCcccEEEeECCc-cChhhhhh---hccCCCCCEEEccCC-ccCccccchHHHhhC
Confidence            55555542 21110      12678899999998854 44422222   677899999999987 5665422 2346788


Q ss_pred             ccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCC-CCccEEEEccCCCcccccchhhhhhcCCCcE
Q 009194          394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCC-QNLTKVTVWSCHRLKYLFSYSMVNSLGQLQH  472 (540)
Q Consensus       394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~  472 (540)
                      ++|++|+++++.-...++......++.|..+ .+..+.-.. .....+ ++|+.|++++| +++.++..  +..+++|++
T Consensus       374 ~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L-~Ls~N~l~~-~~~~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~  448 (520)
T 2z7x_B          374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSSNILTD-TIFRCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQE  448 (520)
T ss_dssp             TTCCEEECCSSCCBCCGGGCSCCCCTTCCEE-ECCSSCCCG-GGGGSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCE
T ss_pred             CCCCEEECCCCcCCcccccchhccCccCCEE-ECcCCCCCc-chhhhhcccCCEEECCCC-cccccchh--hhcCCCCCE
Confidence            9999999998654333655445555666666 555543211 111223 68999999987 57776542  348899999


Q ss_pred             EEEecccccceeccccccCCCCccccccccceeecccCCC
Q 009194          473 LEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK  512 (540)
Q Consensus       473 L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~  512 (540)
                      |++++| .++.++. .      .+..+++|++|++.+.|-
T Consensus       449 L~L~~N-~l~~l~~-~------~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          449 LNVASN-QLKSVPD-G------IFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             EECCSS-CCCCCCT-T------TTTTCTTCCEEECCSSCB
T ss_pred             EECCCC-cCCccCH-H------HhccCCcccEEECcCCCC
Confidence            999887 4555432 1      133578888888887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=1.1e-26  Score=246.89  Aligned_cols=354  Identities=14%  Similarity=0.140  Sum_probs=232.4

Q ss_pred             CCCcC-CCCCccEEEcccCCCCCcc-----------------ccHHHHh--cCccCcEEEcCCCCCC-CCCcccccCCCC
Q 009194           52 LPERL-QCPNLQLFLLYTEGNGPMQ-----------------VSDHFFE--GMEGLKVLQFPGIGSS-SLPSSLGRLINL  110 (540)
Q Consensus        52 l~~~~-~~~~L~~L~l~~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~-~l~~~l~~l~~L  110 (540)
                      +|... ++++|++|++++|.+ ...                 +|..+ .  ++++|++|++++|.+. .+|..++++++|
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             CCHHHhcccCCCEEECcCCcc-ccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            55534 899999999999997 443                 66654 5  8999999999999865 689999999999


Q ss_pred             cEEEcCCCc-cCC---cccccCC------CCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchhhhhcCC
Q 009194          111 QTLCLDWCE-LAD---IAAIGQL------KKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLS  178 (540)
Q Consensus       111 ~~L~l~~~~-~~~---~~~i~~l------~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  178 (540)
                      ++|++++|. ++.   |..++++      ++|++|++++|.++.+|.  .++++++|++|++++|...+.+| . ++.++
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~  353 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI  353 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence            999999998 873   6777776      999999999999999999  89999999999999999555888 4 89999


Q ss_pred             ccceEEccCCCcccccccCCCccchhhccCCCC-ccEEEeecCCCCCCCccccc---cCccEEEEEecCCCCCCCCcccc
Q 009194          179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS---VELQRYKIRIGDGPEDEFDPLLV  254 (540)
Q Consensus       179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~  254 (540)
                      +|+.|++++|.+.         ..+..+..+++ |+.|++++|.+..+|..+..   ++|+.|.++.+.+....... ..
T Consensus       354 ~L~~L~L~~N~l~---------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~  423 (636)
T 4eco_A          354 KLASLNLAYNQIT---------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FD  423 (636)
T ss_dssp             EESEEECCSSEEE---------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SC
T ss_pred             CCCEEECCCCccc---------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh-hc
Confidence            9999999999876         34556888888 99999999998888877655   37999999776643321100 11


Q ss_pred             -------ccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceee
Q 009194          255 -------KSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHI  327 (540)
Q Consensus       255 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  327 (540)
                             ..++|+.|+++++.- ..+  +...                           +..+++|++|+++++ +++.+
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l-~~l--p~~~---------------------------~~~l~~L~~L~Ls~N-~l~~i  472 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQI-SKF--PKEL---------------------------FSTGSPLSSINLMGN-MLTEI  472 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCC-CSC--CTHH---------------------------HHTTCCCSEEECCSS-CCSBC
T ss_pred             ccccccccCCCCCEEECcCCcc-CcC--CHHH---------------------------HccCCCCCEEECCCC-CCCCc
Confidence                   345677777766221 111  1121                           223455555555555 33333


Q ss_pred             ecccccc---ccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccc
Q 009194          328 VGSVRRV---RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC  404 (540)
Q Consensus       328 ~~~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  404 (540)
                      +......   ....+++|+.|+++++ .++.++....  ...+++|++|+++++ +++.+|..  +..+++|+.|+++++
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~--~~~l~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFR--ATTLPYLVGIDLSYN-SFSKFPTQ--PLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGS--TTTCTTCCEEECCSS-CCSSCCCG--GGGCSSCCEEECCSC
T ss_pred             CHHHhccccccccccCCccEEECcCC-cCCccChhhh--hccCCCcCEEECCCC-CCCCcChh--hhcCCCCCEEECCCC
Confidence            2110000   0112236666666653 3444443210  125667777777764 45555332  345677777777654


Q ss_pred             cccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccc
Q 009194          405 DDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCR  479 (540)
Q Consensus       405 ~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~  479 (540)
                      ..+..-.         +.         ...+..+..+++|+.|+++++.- +.+|.. +.   ++|++|++++++
T Consensus       547 ~~ls~N~---------l~---------~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~---~~L~~L~Ls~N~  598 (636)
T 4eco_A          547 RDAQGNR---------TL---------REWPEGITLCPSLTQLQIGSNDI-RKVNEK-IT---PNISVLDIKDNP  598 (636)
T ss_dssp             BCTTCCB---------CC---------CCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC---TTCCEEECCSCT
T ss_pred             cccccCc---------cc---------ccChHHHhcCCCCCEEECCCCcC-CccCHh-Hh---CcCCEEECcCCC
Confidence            3221100         00         00223344566777777776643 555432 11   667777777764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=2.9e-26  Score=247.89  Aligned_cols=352  Identities=12%  Similarity=0.112  Sum_probs=259.9

Q ss_pred             CCCCCCCCcC-CCCCccEEEcccCCCCCc-----------------cccHHH-HhcCccCcEEEcCCCCCC-CCCccccc
Q 009194           47 RDIQELPERL-QCPNLQLFLLYTEGNGPM-----------------QVSDHF-FEGMEGLKVLQFPGIGSS-SLPSSLGR  106 (540)
Q Consensus        47 ~~~~~l~~~~-~~~~L~~L~l~~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~~~-~l~~~l~~  106 (540)
                      |.+..+|... ++++|+.|++++|.+ ..                 .+|..+ |.++++|++|++++|.+. .+|..+++
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~L-sg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~  513 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD  513 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcC-CCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence            3444477644 899999999999997 44                 266665 348999999999999864 68999999


Q ss_pred             CCCCcEEEcCCCc-cCC---cccccCC-------CCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchhh
Q 009194          107 LINLQTLCLDWCE-LAD---IAAIGQL-------KKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNV  173 (540)
Q Consensus       107 l~~L~~L~l~~~~-~~~---~~~i~~l-------~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~  173 (540)
                      +++|++|++++|. ++.   |..++++       ++|++|++++|.+..+|.  .++++++|++|++++|. +..+| . 
T Consensus       514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-  590 (876)
T 4ecn_A          514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-  590 (876)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-
T ss_pred             CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-
Confidence            9999999999998 763   5555554       499999999999999998  89999999999999998 55888 3 


Q ss_pred             hhcCCccceEEccCCCcccccccCCCccchhhccCCCC-ccEEEeecCCCCCCCccccc---cCccEEEEEecCCCC---
Q 009194          174 ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTE-LTTLEIEVPDAEILPPDFVS---VELQRYKIRIGDGPE---  246 (540)
Q Consensus       174 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~---  246 (540)
                      ++.+++|+.|++++|.+.         ..+..+.++++ |+.|++++|.+..+|..+..   ++|+.|.++.+.+..   
T Consensus       591 ~~~L~~L~~L~Ls~N~l~---------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQIE---------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             CCTTSEESEEECCSSCCS---------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             hcCCCcceEEECcCCccc---------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence            899999999999999876         34456788888 99999999998888876555   459999998766532   


Q ss_pred             -CCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCcc-----CCCCccccEEeecc
Q 009194          247 -DEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDD-----GEGFPRLKRLLVTD  320 (540)
Q Consensus       247 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~  320 (540)
                       +.........++|+.|+++++.- .  ..+.+....+++|+.|.+.+..- ..+......     ..++++|+.|++++
T Consensus       662 ~l~~~l~~~~~~~L~~L~Ls~N~L-~--~lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls~  737 (876)
T 4ecn_A          662 NISCSMDDYKGINASTVTLSYNEI-Q--KFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLRF  737 (876)
T ss_dssp             SCSSCTTTCCCCCEEEEECCSSCC-C--SCCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred             cchhhhccccCCCcCEEEccCCcC-C--ccCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECCC
Confidence             21111112445899999998432 2  22444444578999999987643 333222110     22455999999999


Q ss_pred             ccCceeeecccccccc--ccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCC-----CCccccChHHHhhc
Q 009194          321 CSEILHIVGSVRRVRC--EVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR-----KLKYLFSFSMAKNL  393 (540)
Q Consensus       321 ~~~l~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~l  393 (540)
                      + +++.++.     ..  ..+++|+.|+++++ .++.++..    ...+++|+.|++++++     ++....+ ..+.++
T Consensus       738 N-~L~~lp~-----~l~~~~l~~L~~L~Ls~N-~L~~lp~~----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L  805 (876)
T 4ecn_A          738 N-KLTSLSD-----DFRATTLPYLSNMDVSYN-CFSSFPTQ----PLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTC  805 (876)
T ss_dssp             S-CCCCCCG-----GGSTTTCTTCCEEECCSS-CCSSCCCG----GGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGC
T ss_pred             C-CCccchH-----HhhhccCCCcCEEEeCCC-CCCccchh----hhcCCCCCEEECCCCCCcccccccccCh-HHHhcC
Confidence            8 6665543     33  37899999999984 56666543    6689999999998733     3332223 235789


Q ss_pred             ccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCC
Q 009194          394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHR  454 (540)
Q Consensus       394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~  454 (540)
                      ++|+.|++++|.- ..++                        ..  -+++|+.|++++++-
T Consensus       806 ~~L~~L~Ls~N~L-~~Ip------------------------~~--l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          806 PSLIQLQIGSNDI-RKVD------------------------EK--LTPQLYILDIADNPN  839 (876)
T ss_dssp             SSCCEEECCSSCC-CBCC------------------------SC--CCSSSCEEECCSCTT
T ss_pred             CCCCEEECCCCCC-CccC------------------------Hh--hcCCCCEEECCCCCC
Confidence            9999999999754 6553                        11  136999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=3.8e-25  Score=236.17  Aligned_cols=454  Identities=17%  Similarity=0.122  Sum_probs=257.0

Q ss_pred             CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194           23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL  100 (540)
Q Consensus        23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  100 (540)
                      .+.+++++|. .++..+++|++++|.+..++.  +.++++|++|++++|.+  ..++.+.|.++++|++|++++|.+..+
T Consensus        39 ~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           39 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             TTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            3455667665 578899999999999988875  44899999999999986  677777789999999999999999988


Q ss_pred             Cc-ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCc--ccchhcCCCCCCCEEECCCCccccccchhhhh
Q 009194          101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS  175 (540)
Q Consensus       101 ~~-~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  175 (540)
                      |. .+.++++|++|++++|.++. + ..++++++|++|++++|.++  .+|..++.+++|++|++++|. +..++...++
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~  194 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR  194 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence            75 67999999999999999987 4 57999999999999999887  457778999999999999988 5555544455


Q ss_pred             cCCccc----eEEccCCCcccccccCCC----------------ccchhhccCCCCccEEEeecCC------CCCC----
Q 009194          176 KLSQLE----ELYMGNGFSGWEKVEGGS----------------NASLVELERLTELTTLEIEVPD------AEIL----  225 (540)
Q Consensus       176 ~l~~L~----~L~l~~~~~~~~~~~~~~----------------~~~~~~l~~l~~L~~L~l~~~~------~~~~----  225 (540)
                      .+.+++    .++++.+.+.....+...                ......+..+..++...+....      ....    
T Consensus       195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~  274 (635)
T 4g8a_A          195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA  274 (635)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred             chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence            554433    455665554422111100                0011223344444444332211      0000    


Q ss_pred             ------------------------Cccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhh
Q 009194          226 ------------------------PPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTK  280 (540)
Q Consensus       226 ------------------------~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  280 (540)
                                              ...... .+++.+.+........   ........++.|++.++.. ..+.     .
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~-~~~~-----~  345 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKF-GQFP-----T  345 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC---GGGGSCCCCSEEEEESCEE-SSCC-----C
T ss_pred             cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc---cccccchhhhhhhcccccc-cCcC-----c
Confidence                                    000000 3344444422211111   1123345666777665321 1111     0


Q ss_pred             hhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecc---------------------ccccccccC
Q 009194          281 MLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGS---------------------VRRVRCEVF  339 (540)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---------------------~~~~~~~~~  339 (540)
                      ..++.|+.+.+....... .    .....+++|+.+.+++.. +......                     ........+
T Consensus       346 ~~l~~L~~l~l~~n~~~~-~----~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l  419 (635)
T 4g8a_A          346 LKLKSLKRLTFTSNKGGN-A----FSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGL  419 (635)
T ss_dssp             CBCTTCCEEEEESCCSCC-B----CCCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTC
T ss_pred             ccchhhhhcccccccCCC-C----cccccccccccchhhccc-cccccccccchhhhhhhhhhhcccccccccccccccc
Confidence            123444444444332211 0    012234555555554432 1111000                     000023344


Q ss_pred             cccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCC
Q 009194          340 PLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPP  419 (540)
Q Consensus       340 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  419 (540)
                      ++|+.+.+..+......+...   ...+++++.++++.+ .+...++ .....+++|+.|+++++.....+....+..++
T Consensus       420 ~~L~~l~l~~~~~~~~~~~~~---~~~l~~l~~l~ls~n-~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          420 EQLEHLDFQHSNLKQMSEFSV---FLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             TTCCEEECTTSEEESTTSSCT---TTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccccchhhhhccccccccccc---ccccccccccccccc-ccccccc-cccccchhhhhhhhhhcccccccCchhhhhcc
Confidence            555555555443332222221   445566666666654 3444322 23455667777777776655555544555555


Q ss_pred             CccceeeecccCCC--CCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccc
Q 009194          420 TTQGFIEINAEDDP--VHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFK  497 (540)
Q Consensus       420 ~l~~l~~i~~~~~~--~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~  497 (540)
                      +|..| .++.+.-.  .+.....+++|+.|+++++ +++.++. ..+.++++|++|+++++. ++.+.. +.      +.
T Consensus       495 ~L~~L-~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~------l~  563 (635)
T 4g8a_A          495 NLTFL-DLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKK-QE------LQ  563 (635)
T ss_dssp             TCCEE-ECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSC-CCBCCS-SC------TT
T ss_pred             ccCEE-ECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCc-CCCCCH-HH------HH
Confidence            55555 44444322  1233456677777777775 5666643 335667777777777653 333321 11      12


Q ss_pred             cc-cccceeecccCC
Q 009194          498 VF-PKLHYLSLHWLP  511 (540)
Q Consensus       498 ~~-~~L~~L~l~~~p  511 (540)
                      .+ ++|++|++++.|
T Consensus       564 ~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          564 HFPSSLAFLNLTQND  578 (635)
T ss_dssp             CCCTTCCEEECTTCC
T ss_pred             hhhCcCCEEEeeCCC
Confidence            34 467777776443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.2e-26  Score=238.41  Aligned_cols=419  Identities=12%  Similarity=0.090  Sum_probs=277.5

Q ss_pred             hhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccc
Q 009194           28 EKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG  105 (540)
Q Consensus        28 ~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~  105 (540)
                      +.+|. .++++++++++++|.+..++.  +.++++|++|++++|.+  ..+..+.|.++++|++|++++|.+..+|..  
T Consensus        13 ~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--   87 (520)
T 2z7x_B           13 IHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVKISCH--   87 (520)
T ss_dssp             SSCCC-SCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCEEECC--
T ss_pred             ccccc-cccccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceeecCcc--
Confidence            34453 345899999999999987763  45899999999999987  555555579999999999999999988876  


Q ss_pred             cCCCCcEEEcCCCccCC---cccccCCCCCCEEEecCCCCcccchhcCCCCCC--CEEECCCCcc--ccccchhhhh---
Q 009194          106 RLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPNVIS---  175 (540)
Q Consensus       106 ~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~~l~---  175 (540)
                      .+++|++|++++|.++.   |..++++++|++|++++|.+..  ..+..+++|  ++|++++|..  ....|.. ++   
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~  164 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFN  164 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCC
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccc
Confidence            89999999999999875   5899999999999999998875  346777888  9999998874  2333333 33   


Q ss_pred             -----------------------cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCC-----CCc
Q 009194          176 -----------------------KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEI-----LPP  227 (540)
Q Consensus       176 -----------------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~  227 (540)
                                             .+++|+.+++++|......  ......+..++.+++|+.|++..+....     ++.
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~  242 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC--SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ  242 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT--HHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc--ceeecchhhhccccchhhccccccccCHHHHHHHHH
Confidence                                   3556666666655310000  0001233467778888888887765331     111


Q ss_pred             cccccCccEEEEEecC----CCCCCCCccccccccccEEEEeccccccccccc-hhhhhhh--cccceeeeccccCcccc
Q 009194          228 DFVSVELQRYKIRIGD----GPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN-DGTKMLL--QRTEDLWLETLEGVQSV  300 (540)
Q Consensus       228 ~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~~~~  300 (540)
                      ....++|+.|.++.+.    .+.+........++.|+.+++.+.    .+..+ .++...+  .+|+.|.+.++.-.. .
T Consensus       243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n----~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~  317 (520)
T 2z7x_B          243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD----VFGFPQSYIYEIFSNMNIKNFTVSGTRMVH-M  317 (520)
T ss_dssp             HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC----CCCSCTHHHHHHHHTCCCSEEEEESSCCCC-C
T ss_pred             HhhhCcccEEEeecccccCccccchhhcccccCceeEecccccc----ceecchhhhhcccccCceeEEEcCCCcccc-c
Confidence            1112588888886543    333311111156788888888772    22323 3333333  458888888765321 1


Q ss_pred             cccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCC
Q 009194          301 VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRK  380 (540)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~  380 (540)
                          .....+++|++|+++++. ++...    ......+++|+.|+++++. ++.++..... .+.+++|++|+++++ .
T Consensus       318 ----~~~~~l~~L~~L~Ls~n~-l~~~~----~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~~~l~~L~~L~Ls~N-~  385 (520)
T 2z7x_B          318 ----LCPSKISPFLHLDFSNNL-LTDTV----FENCGHLTELETLILQMNQ-LKELSKIAEM-TTQMKSLQQLDISQN-S  385 (520)
T ss_dssp             ----CCCSSCCCCCEEECCSSC-CCTTT----TTTCCCCSSCCEEECCSSC-CCBHHHHHHH-HTTCTTCCEEECCSS-C
T ss_pred             ----cchhhCCcccEEEeECCc-cChhh----hhhhccCCCCCEEEccCCc-cCccccchHH-HhhCCCCCEEECCCC-c
Confidence                112578889999998884 33311    1145678889999988743 4432210000 556888999999886 4


Q ss_pred             Ccc-ccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCC-CCCCccCCCCccEEEEccCCCcccc
Q 009194          381 LKY-LFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP-VHQGIYCCQNLTKVTVWSCHRLKYL  458 (540)
Q Consensus       381 l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~-~~~~~~~~~~L~~L~l~~C~~l~~l  458 (540)
                      ++. +|. ..+..+++|++|++++|.-...++ ....  +.|..+ .+..+.-. ++..+..+++|+.|+++++ +++.+
T Consensus       386 l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~--~~L~~L-~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l  459 (520)
T 2z7x_B          386 VSYDEKK-GDCSWTKSLLSLNMSSNILTDTIF-RCLP--PRIKVL-DLHSNKIKSIPKQVVKLEALQELNVASN-QLKSV  459 (520)
T ss_dssp             CBCCGGG-CSCCCCTTCCEEECCSSCCCGGGG-GSCC--TTCCEE-ECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred             CCccccc-chhccCccCCEEECcCCCCCcchh-hhhc--ccCCEE-ECCCCcccccchhhhcCCCCCEEECCCC-cCCcc
Confidence            555 532 334567889999998865333332 1111  455555 45444322 3344558999999999998 68887


Q ss_pred             cchhhhhhcCCCcEEEEecccc
Q 009194          459 FSYSMVNSLGQLQHLEIRNCRS  480 (540)
Q Consensus       459 ~~~~~~~~l~~L~~L~i~~C~~  480 (540)
                      +.. .+..+++|++|++++++-
T Consensus       460 ~~~-~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          460 PDG-IFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             CTT-TTTTCTTCCEEECCSSCB
T ss_pred             CHH-HhccCCcccEEECcCCCC
Confidence            653 567899999999998763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.4e-25  Score=229.61  Aligned_cols=134  Identities=19%  Similarity=0.174  Sum_probs=88.8

Q ss_pred             CccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHH
Q 009194          310 FPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSM  389 (540)
Q Consensus       310 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  389 (540)
                      .++|+.|+++++. ++.+...    ....+++|+.|+++++ .++.+....   ++.+++|++|++++| .++.+++ ..
T Consensus       274 ~~~L~~L~l~~n~-l~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-~~  342 (455)
T 3v47_A          274 ASGVKTCDLSKSK-IFALLKS----VFSHFTDLEQLTLAQN-EINKIDDNA---FWGLTHLLKLNLSQN-FLGSIDS-RM  342 (455)
T ss_dssp             TSCCCEEECCSSC-CCEECTT----TTTTCTTCCEEECTTS-CCCEECTTT---TTTCTTCCEEECCSS-CCCEECG-GG
T ss_pred             ccCceEEEecCcc-ccccchh----hcccCCCCCEEECCCC-cccccChhH---hcCcccCCEEECCCC-ccCCcCh-hH
Confidence            4678888888873 4433211    4566788888888874 455544333   566788888888886 5666643 34


Q ss_pred             HhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCC
Q 009194          390 AKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQ  469 (540)
Q Consensus       390 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~  469 (540)
                      +..+++|++|+++++ +++.++                       +..+..+++|+.|++.++ +++.++. ..+..+++
T Consensus       343 ~~~l~~L~~L~Ls~N-~l~~~~-----------------------~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~  396 (455)
T 3v47_A          343 FENLDKLEVLDLSYN-HIRALG-----------------------DQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTS  396 (455)
T ss_dssp             GTTCTTCCEEECCSS-CCCEEC-----------------------TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTT
T ss_pred             hcCcccCCEEECCCC-cccccC-----------------------hhhccccccccEEECCCC-ccccCCH-hHhccCCc
Confidence            567888888888885 444442                       223345688888888885 5666643 34567788


Q ss_pred             CcEEEEecccc
Q 009194          470 LQHLEIRNCRS  480 (540)
Q Consensus       470 L~~L~i~~C~~  480 (540)
                      |++|++++++-
T Consensus       397 L~~L~l~~N~l  407 (455)
T 3v47_A          397 LQKIWLHTNPW  407 (455)
T ss_dssp             CCEEECCSSCB
T ss_pred             ccEEEccCCCc
Confidence            88888887653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=2.4e-25  Score=219.41  Aligned_cols=303  Identities=17%  Similarity=0.159  Sum_probs=193.7

Q ss_pred             hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ..+++++++++++.+..++.+..+++|++|++++|.+  ..++.  +.++++|++|++++|.+..++ .+..+++|++|+
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i--~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQI--TDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY  116 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCcc--ccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence            3667888888888877777766788888888888775  44444  577888888888888777765 477888888888


Q ss_pred             cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      +++|.+.....+..+++|++|++++|.....+..+..+++|++|++++|. +..++.  ++.+++|+.|++++|.+.   
T Consensus       117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---  190 (347)
T 4fmz_A          117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---  190 (347)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC---
T ss_pred             CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc---
Confidence            88888777434778888888888887444333447788888888888776 555554  677888888888877654   


Q ss_pred             ccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccc
Q 009194          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ  274 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  274 (540)
                             ....+..+++|+.|++.+|....++.                         ...+++|++|+++++.- ..++
T Consensus       191 -------~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~~~~L~~L~l~~n~l-~~~~  237 (347)
T 4fmz_A          191 -------DISPLASLTSLHYFTAYVNQITDITP-------------------------VANMTRLNSLKIGNNKI-TDLS  237 (347)
T ss_dssp             -------CCGGGGGCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCC-CCCG
T ss_pred             -------ccccccCCCccceeecccCCCCCCch-------------------------hhcCCcCCEEEccCCcc-CCCc
Confidence                   12226677778888887777654443                         22334444444444211 1111


Q ss_pred             cchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccccccccc
Q 009194          275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE  354 (540)
Q Consensus       275 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  354 (540)
                         . ...+++|+.|++.++. ++..    +.+..+++|++|+++++ .++.+.      ....+++|+.|++++|. ++
T Consensus       238 ---~-~~~l~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~L~~n~-l~  300 (347)
T 4fmz_A          238 ---P-LANLSQLTWLEIGTNQ-ISDI----NAVKDLTKLKMLNVGSN-QISDIS------VLNNLSQLNSLFLNNNQ-LG  300 (347)
T ss_dssp             ---G-GTTCTTCCEEECCSSC-CCCC----GGGTTCTTCCEEECCSS-CCCCCG------GGGGCTTCSEEECCSSC-CC
T ss_pred             ---c-hhcCCCCCEEECCCCc-cCCC----hhHhcCCCcCEEEccCC-ccCCCh------hhcCCCCCCEEECcCCc-CC
Confidence               0 1233555555555432 1221    12456777888888777 444431      45667778888887753 44


Q ss_pred             ccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccc
Q 009194          355 TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (540)
Q Consensus       355 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  405 (540)
                      ......   .+.+++|++|++++|+ ++.+++   ...+++|++|++++|+
T Consensus       301 ~~~~~~---l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          301 NEDMEV---IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGHHH---HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             CcChhH---hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence            333222   4457778888888764 666544   4567778888877754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=1.1e-24  Score=228.81  Aligned_cols=431  Identities=16%  Similarity=0.159  Sum_probs=252.7

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~  117 (540)
                      .++++++++.+..+|.... +++++|++++|.+  ..++...|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus        33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            4788888888877776432 7888888888886  455555567888888888888888765 56678888888888888


Q ss_pred             CccCC-cccccCCCCCCEEEecCCCCcccc--hhcCCCCCCCEEECCCCccccccchhhhhcCCcc--ceEEccCCCccc
Q 009194          118 CELAD-IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL--EELYMGNGFSGW  192 (540)
Q Consensus       118 ~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~~~  192 (540)
                      |.++. |..  .+++|++|++++|.+..+|  ..++++++|++|++++|. +....   ++.+++|  +.|++++|.+..
T Consensus       110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCC
T ss_pred             CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccccc
Confidence            88877 444  7888888888888877654  578888888888888876 33322   4555555  888888776610


Q ss_pred             ccccCCCccchhhccCCC--CccEEEeecCCCCC-CCccccc--cCccEEEEEecCCC--CC-CCCccccccccccEEEE
Q 009194          193 EKVEGGSNASLVELERLT--ELTTLEIEVPDAEI-LPPDFVS--VELQRYKIRIGDGP--ED-EFDPLLVKSEASRLMML  264 (540)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~--~~-~~~~~~~~~~~L~~L~l  264 (540)
                      .      ...+..+..+.  .+ .+++..|.... ++.....  ++|+.+.++.....  .. .........+.++.+++
T Consensus       184 ~------~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          184 K------GGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL  256 (562)
T ss_dssp             C------SSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred             c------ccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence            0      01122333332  12 34555555332 2222111  56667766543200  00 00011234566777777


Q ss_pred             eccccccccccchhhh--hhhcccceeeeccccCcccccccCcc--CCCCc--------------------------ccc
Q 009194          265 KGIKKVSILQENDGTK--MLLQRTEDLWLETLEGVQSVVHELDD--GEGFP--------------------------RLK  314 (540)
Q Consensus       265 ~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~--------------------------~L~  314 (540)
                      ..+.- ..-. ..+..  ...++|+.|++.++.-.......+..  ...++                          +|+
T Consensus       257 ~~~~l-~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          257 QHIET-TWKC-SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEEE-CHHH-HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred             cCCcC-cHHH-HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence            65211 0000 01111  11258888888876532222111100  01222                          244


Q ss_pred             EEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccC-hHHHhhc
Q 009194          315 RLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS-FSMAKNL  393 (540)
Q Consensus       315 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~l  393 (540)
                      .|+++++. +..+.      ....+++|+.|+++++ .++......   .+.+++|++|+++++ +++.++. ...+..+
T Consensus       335 ~L~l~~n~-~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l  402 (562)
T 3a79_B          335 MLSISDTP-FIHMV------CPPSPSSFTFLNFTQN-VFTDSVFQG---CSTLKRLQTLILQRN-GLKNFFKVALMTKNM  402 (562)
T ss_dssp             EEEEESSC-CCCCC------CCSSCCCCCEEECCSS-CCCTTTTTT---CCSCSSCCEEECCSS-CCCBTTHHHHTTTTC
T ss_pred             EEEccCCC-ccccc------CccCCCCceEEECCCC-ccccchhhh---hcccCCCCEEECCCC-CcCCcccchhhhcCC
Confidence            44444442 11110      1256788888888875 344422222   667889999999886 6776542 1235678


Q ss_pred             ccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCC-CCccEEEEccCCCcccccchhhhhhcCCCcE
Q 009194          394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCC-QNLTKVTVWSCHRLKYLFSYSMVNSLGQLQH  472 (540)
Q Consensus       394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~-~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~  472 (540)
                      ++|+.|+++++.-...++......++.|..+ .+..+.-. ......+ ++|+.|+++++ +++.++...  .++++|++
T Consensus       403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L-~l~~n~l~-~~~~~~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~  477 (562)
T 3a79_B          403 SSLETLDVSLNSLNSHAYDRTCAWAESILVL-NLSSNMLT-GSVFRCLPPKVKVLDLHNN-RIMSIPKDV--THLQALQE  477 (562)
T ss_dssp             TTCCEEECTTSCCBSCCSSCCCCCCTTCCEE-ECCSSCCC-GGGGSSCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSE
T ss_pred             CCCCEEECCCCcCCCccChhhhcCcccCCEE-ECCCCCCC-cchhhhhcCcCCEEECCCC-cCcccChhh--cCCCCCCE
Confidence            8999999998653332554445555666655 44444311 1122233 68888888887 677775432  37888888


Q ss_pred             EEEecccccceeccccccCCCCccccccccceeecccCCC
Q 009194          473 LEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK  512 (540)
Q Consensus       473 L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~  512 (540)
                      |+++++ .++.++. ..      +..+++|+.|++++.|-
T Consensus       478 L~L~~N-~l~~l~~-~~------~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          478 LNVASN-QLKSVPD-GV------FDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EECCSS-CCCCCCT-TS------TTTCTTCCCEECCSCCB
T ss_pred             EECCCC-CCCCCCH-HH------HhcCCCCCEEEecCCCc
Confidence            888886 3554432 11      33578888888887653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=1.8e-24  Score=227.19  Aligned_cols=419  Identities=15%  Similarity=0.113  Sum_probs=259.4

Q ss_pred             hhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc
Q 009194           26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS  103 (540)
Q Consensus        26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  103 (540)
                      .++.+|. .++++++++++++|.+..++.  +.++++|++|++++|.+  ..++.+.|.++++|++|++++|.+..+|..
T Consensus        42 ~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  118 (562)
T 3a79_B           42 NLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNISCC  118 (562)
T ss_dssp             CCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred             CCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence            4555564 456899999999999988764  45999999999999987  556555678999999999999999999876


Q ss_pred             cccCCCCcEEEcCCCccCC---cccccCCCCCCEEEecCCCCcccchhcCCCCCC--CEEECCCCcc--ccccchhhhhc
Q 009194          104 LGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRL--QLLDLSNCWW--LEVIAPNVISK  176 (540)
Q Consensus       104 l~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~~l~~  176 (540)
                        .+++|++|++++|.++.   |..++++++|++|++++|.+...  .+..+++|  ++|++++|..  ....|.. +..
T Consensus       119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~  193 (562)
T 3a79_B          119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQI  193 (562)
T ss_dssp             --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEE
T ss_pred             --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-ccc
Confidence              89999999999999876   37899999999999999988752  35555666  9999999874  3333433 444


Q ss_pred             C--------------------------CccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC-----CC
Q 009194          177 L--------------------------SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-----IL  225 (540)
Q Consensus       177 l--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~  225 (540)
                      +                          ++|+.++++++.....    .....+..+..+++|+.+++..+...     .+
T Consensus       194 l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~  269 (562)
T 3a79_B          194 PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ----RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL  269 (562)
T ss_dssp             CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH----HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred             cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc----hHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence            3                          3444444444321000    00112334455566666655544321     11


Q ss_pred             CccccccCccEEEEEecC----CCCCCCCccccccccccEEEEeccccccccccc-hhhhhhh--cccceeeeccccCcc
Q 009194          226 PPDFVSVELQRYKIRIGD----GPEDEFDPLLVKSEASRLMMLKGIKKVSILQEN-DGTKMLL--QRTEDLWLETLEGVQ  298 (540)
Q Consensus       226 ~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~--~~L~~L~l~~~~~~~  298 (540)
                      +......+|+.|.++.+.    .+.+........++.|+.+++..    ..+..+ .+....+  .+++.|.+.++.-..
T Consensus       270 ~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~----~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~  345 (562)
T 3a79_B          270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN----QVFLFSKEALYSVFAEMNIKMLSISDTPFIH  345 (562)
T ss_dssp             HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE----CCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccc----ceeecChhhhhhhhccCcceEEEccCCCccc
Confidence            111112478888886543    22221000013344444444443    222222 2222222  457778777654311


Q ss_pred             cccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeC
Q 009194          299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSC  378 (540)
Q Consensus       299 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c  378 (540)
                           ......+++|++|+++++. ++...    ......+++|+.|+++++ .++.++..... .+.+++|++|+++++
T Consensus       346 -----~~~~~~l~~L~~L~l~~n~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~l~~L~~L~l~~N  413 (562)
T 3a79_B          346 -----MVCPPSPSSFTFLNFTQNV-FTDSV----FQGCSTLKRLQTLILQRN-GLKNFFKVALM-TKNMSSLETLDVSLN  413 (562)
T ss_dssp             -----CCCCSSCCCCCEEECCSSC-CCTTT----TTTCCSCSSCCEEECCSS-CCCBTTHHHHT-TTTCTTCCEEECTTS
T ss_pred             -----ccCccCCCCceEEECCCCc-cccch----hhhhcccCCCCEEECCCC-CcCCcccchhh-hcCCCCCCEEECCCC
Confidence                 1112567788888888773 33211    114466778888888773 45544321111 566788888888876


Q ss_pred             CCCcc-ccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCC-CCCCCccCCCCccEEEEccCCCcc
Q 009194          379 RKLKY-LFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDD-PVHQGIYCCQNLTKVTVWSCHRLK  456 (540)
Q Consensus       379 ~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~-~~~~~~~~~~~L~~L~l~~C~~l~  456 (540)
                       .++. ++. ..+..+++|++|+++++.--..++ ....  +.|..+ .++.+.- .++..+..+++|+.|++.++ +++
T Consensus       414 -~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~l~--~~L~~L-~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~  486 (562)
T 3a79_B          414 -SLNSHAYD-RTCAWAESILVLNLSSNMLTGSVF-RCLP--PKVKVL-DLHNNRIMSIPKDVTHLQALQELNVASN-QLK  486 (562)
T ss_dssp             -CCBSCCSS-CCCCCCTTCCEEECCSSCCCGGGG-SSCC--TTCSEE-ECCSSCCCCCCTTTTSSCCCSEEECCSS-CCC
T ss_pred             -cCCCccCh-hhhcCcccCCEEECCCCCCCcchh-hhhc--CcCCEE-ECCCCcCcccChhhcCCCCCCEEECCCC-CCC
Confidence             4554 432 334567788888888764322222 1111  345555 4444321 13344557899999999997 577


Q ss_pred             cccchhhhhhcCCCcEEEEecccc
Q 009194          457 YLFSYSMVNSLGQLQHLEIRNCRS  480 (540)
Q Consensus       457 ~l~~~~~~~~l~~L~~L~i~~C~~  480 (540)
                      .++.. .+..+++|++|++++++-
T Consensus       487 ~l~~~-~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          487 SVPDG-VFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             CCCTT-STTTCTTCCCEECCSCCB
T ss_pred             CCCHH-HHhcCCCCCEEEecCCCc
Confidence            77653 467899999999998763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=4.7e-24  Score=210.07  Aligned_cols=283  Identities=16%  Similarity=0.150  Sum_probs=208.7

Q ss_pred             hhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCC
Q 009194           31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL  110 (540)
Q Consensus        31 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L  110 (540)
                      +.-...++++++++++|.+..++.+..+++|++|++++|.+  ..++.  +.++++|++|++++|.+..++. +..+++|
T Consensus        60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L  134 (347)
T 4fmz_A           60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDISP-LANLTKM  134 (347)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred             hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCchh-hccCCce
Confidence            33345789999999999998888877999999999999986  44543  6899999999999999998877 8899999


Q ss_pred             cEEEcCCCcc-CCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194          111 QTLCLDWCEL-ADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (540)
Q Consensus       111 ~~L~l~~~~~-~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (540)
                      ++|++++|.. ..+..+..+++|++|++++|.+..++. +..+++|++|++++|. +..++.  +..+++|+.+++++|.
T Consensus       135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~  210 (347)
T 4fmz_A          135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQ  210 (347)
T ss_dssp             CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSC
T ss_pred             eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCC
Confidence            9999999974 447779999999999999999988776 8899999999999998 667766  7899999999999987


Q ss_pred             cccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEeccc
Q 009194          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIK  268 (540)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  268 (540)
                      +..          ...+..+++|++|++++|....++. +.. ++|+.|.++.+.....   +....+            
T Consensus       211 l~~----------~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l------------  264 (347)
T 4fmz_A          211 ITD----------ITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDL------------  264 (347)
T ss_dssp             CCC----------CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTC------------
T ss_pred             CCC----------CchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcC------------
Confidence            751          1227889999999999999876665 222 6666666654433222   112333            


Q ss_pred             cccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccc
Q 009194          269 KVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM  348 (540)
Q Consensus       269 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  348 (540)
                                     ++|+.|.+.++. ++.+    +.+..+++|+.|++++|. ++....    .....+++|+.|+++
T Consensus       265 ---------------~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~L~~n~-l~~~~~----~~l~~l~~L~~L~L~  319 (347)
T 4fmz_A          265 ---------------TKLKMLNVGSNQ-ISDI----SVLNNLSQLNSLFLNNNQ-LGNEDM----EVIGGLTNLTTLFLS  319 (347)
T ss_dssp             ---------------TTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSSC-CCGGGH----HHHHTCTTCSEEECC
T ss_pred             ---------------CCcCEEEccCCc-cCCC----hhhcCCCCCCEEECcCCc-CCCcCh----hHhhccccCCEEEcc
Confidence                           445555554432 2221    124567778888888773 332211    134567788888888


Q ss_pred             ccccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194          349 FLTNLETICYSQLREDQSFSNLRIINVDSCR  379 (540)
Q Consensus       349 ~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  379 (540)
                      +++ ++.++.     ...+++|++|++++|+
T Consensus       320 ~n~-l~~~~~-----~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          320 QNH-ITDIRP-----LASLSKMDSADFANQV  344 (347)
T ss_dssp             SSS-CCCCGG-----GGGCTTCSEESSSCC-
T ss_pred             CCc-cccccC-----hhhhhccceeehhhhc
Confidence            764 444433     4557888888887763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=2.3e-24  Score=215.82  Aligned_cols=303  Identities=14%  Similarity=0.150  Sum_probs=184.5

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCC
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE  133 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~  133 (540)
                      .+++++.+.+.++.+  ..++..+|.++++|++|++++|.+..++ ..+..+++|++|++++|.++.  +..++++++|+
T Consensus        43 ~l~~l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCch--hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            567888888888875  6777777788888888888888887655 477888888888888888776  36678888888


Q ss_pred             EEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCc
Q 009194          134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL  212 (540)
Q Consensus       134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L  212 (540)
                      +|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+..           ..++.+++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~l~~L  188 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIPSL  188 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-----------CCGGGCTTC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-----------ccccccccc
Confidence            888888888888876 4788888888888887 556655557888888888888887651           135567788


Q ss_pred             cEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeec
Q 009194          213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE  292 (540)
Q Consensus       213 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  292 (540)
                      +.|++++|....++.   ..+|+.|.++.+.+....    ....++|+.|+++++    .+.... ....+++|+.|++.
T Consensus       189 ~~L~l~~n~l~~~~~---~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n----~l~~~~-~l~~l~~L~~L~Ls  256 (390)
T 3o6n_A          189 FHANVSYNLLSTLAI---PIAVEELDASHNSINVVR----GPVNVELTILKLQHN----NLTDTA-WLLNYPGLVEVDLS  256 (390)
T ss_dssp             SEEECCSSCCSEEEC---CSSCSEEECCSSCCCEEE----CCCCSSCCEEECCSS----CCCCCG-GGGGCTTCSEEECC
T ss_pred             ceeecccccccccCC---CCcceEEECCCCeeeecc----ccccccccEEECCCC----CCcccH-HHcCCCCccEEECC
Confidence            888888877654321   145666666444332221    122345666666552    222111 11223455555554


Q ss_pred             cccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCe
Q 009194          293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI  372 (540)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~  372 (540)
                      +..-......   .+..+++|+.|+++++ +++.++.     ....+++|+.|+++++ .++.++..    .+.+++|++
T Consensus       257 ~n~l~~~~~~---~~~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~~----~~~l~~L~~  322 (390)
T 3o6n_A          257 YNELEKIMYH---PFVKMQRLERLYISNN-RLVALNL-----YGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLEN  322 (390)
T ss_dssp             SSCCCEEESG---GGTTCSSCCEEECCSS-CCCEEEC-----SSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSE
T ss_pred             CCcCCCcChh---HccccccCCEEECCCC-cCcccCc-----ccCCCCCCCEEECCCC-cceecCcc----ccccCcCCE
Confidence            4322111111   1334555555555554 3333321     2234555555555553 34433322    334555555


Q ss_pred             EEEeeCCCCccccChHHHhhcccccEEEEccc
Q 009194          373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDC  404 (540)
Q Consensus       373 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  404 (540)
                      |+++++ .++.++    ...+++|+.|+++++
T Consensus       323 L~L~~N-~i~~~~----~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          323 LYLDHN-SIVTLK----LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             EECCSS-CCCCCC----CCTTCCCSEEECCSS
T ss_pred             EECCCC-ccceeC----chhhccCCEEEcCCC
Confidence            555554 344442    234455555555553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=3.9e-24  Score=218.83  Aligned_cols=389  Identities=15%  Similarity=0.105  Sum_probs=241.9

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCC-CC-CcccccCCCCcEEEcCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SL-PSSLGRLINLQTLCLDW  117 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-~~~l~~l~~L~~L~l~~  117 (540)
                      +.++..++.+..+|.  -.++|++|++++|.+  ..++...|.++++|++|++++|.+. .+ +..+.++++|++|++++
T Consensus        13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCSSCCC--CCTTCCEEECCSSCC--CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcccCCC--CCCccCEEEecCCcc--CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            456667777777777  336788888888876  4443444578888888888888775 34 45677888888888888


Q ss_pred             CccCC--cccccCCCCCCEEEecCCCCcc-cchh--cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194          118 CELAD--IAAIGQLKKLEILSLAYSNINQ-LPVE--IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (540)
Q Consensus       118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~-lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (540)
                      |.++.  |..++++++|++|++++|.++. .|..  +..+++|++|++++|......|...++++++|++|++++|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            88775  5778888888888888887764 3444  77888888888888873333354446788888888888877652


Q ss_pred             ccccCCCccchhhccCC--CCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccc
Q 009194          193 EKVEGGSNASLVELERL--TELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV  270 (540)
Q Consensus       193 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  270 (540)
                      ..        ...+..+  .+|+.|+++++....++.....               +.........++|++|+++++.-.
T Consensus       169 ~~--------~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------~~~~~~~~~~~~L~~L~Ls~n~l~  225 (455)
T 3v47_A          169 IC--------EEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------WEKCGNPFKNTSITTLDLSGNGFK  225 (455)
T ss_dssp             CC--------TTTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------HHHHCCTTTTCEEEEEECTTSCCC
T ss_pred             cC--------hhhhhccccccccccccccCcccccchhhcc---------------ccccccccccceeeeEecCCCccc
Confidence            11        1223222  5677888887776555432111               000000223456777777763211


Q ss_pred             cccccchhhhh--hhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccc
Q 009194          271 SILQENDGTKM--LLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM  348 (540)
Q Consensus       271 ~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  348 (540)
                      ...  +.....  ..++++.|.+.++........    ...++.+..                ..+.....++|+.|+++
T Consensus       226 ~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~L~~L~l~  283 (455)
T 3v47_A          226 ESM--AKRFFDAIAGTKIQSLILSNSYNMGSSFG----HTNFKDPDN----------------FTFKGLEASGVKTCDLS  283 (455)
T ss_dssp             HHH--HHHHHHHTTTCCEEEEECTTCTTTSCCTT----CCSSCCCCT----------------TTTGGGTTSCCCEEECC
T ss_pred             ccc--hhhhhccccccceeeEeeccccccccccc----hhhhccCcc----------------cccccccccCceEEEec
Confidence            111  111111  125556666555432211100    011111100                00122235789999998


Q ss_pred             ccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeec
Q 009194          349 FLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEIN  428 (540)
Q Consensus       349 ~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~  428 (540)
                      ++. +.......   .+.+++|++|++++| .++.+++. .+..+++|++|++++| .++.+.                 
T Consensus       284 ~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~-----------------  339 (455)
T 3v47_A          284 KSK-IFALLKSV---FSHFTDLEQLTLAQN-EINKIDDN-AFWGLTHLLKLNLSQN-FLGSID-----------------  339 (455)
T ss_dssp             SSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEEC-----------------
T ss_pred             Ccc-ccccchhh---cccCCCCCEEECCCC-cccccChh-HhcCcccCCEEECCCC-ccCCcC-----------------
Confidence            854 44443333   677899999999987 57766443 3567899999999986 445442                 


Q ss_pred             ccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecc
Q 009194          429 AEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLH  508 (540)
Q Consensus       429 ~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~  508 (540)
                            ......+++|+.|+++++ +++.+++ ..+.++++|++|+++++ .++.++. +.      +..+++|++|+++
T Consensus       340 ------~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~------~~~l~~L~~L~l~  403 (455)
T 3v47_A          340 ------SRMFENLDKLEVLDLSYN-HIRALGD-QSFLGLPNLKELALDTN-QLKSVPD-GI------FDRLTSLQKIWLH  403 (455)
T ss_dssp             ------GGGGTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCCCT-TT------TTTCTTCCEEECC
T ss_pred             ------hhHhcCcccCCEEECCCC-cccccCh-hhccccccccEEECCCC-ccccCCH-hH------hccCCcccEEEcc
Confidence                  223446799999999998 4666633 45678999999999996 4555432 11      2468999999999


Q ss_pred             cCCCCCCCC
Q 009194          509 WLPKLSSFA  517 (540)
Q Consensus       509 ~~p~L~~~~  517 (540)
                      +.|--...+
T Consensus       404 ~N~l~~~~~  412 (455)
T 3v47_A          404 TNPWDCSCP  412 (455)
T ss_dssp             SSCBCCCTT
T ss_pred             CCCcccCCC
Confidence            776544443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=4.6e-23  Score=220.00  Aligned_cols=456  Identities=16%  Similarity=0.116  Sum_probs=253.5

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~  118 (540)
                      ++++-++..+..+|... -+++++|++++|.+  ..++...|.++++|++|++++|.++.++. .|.++++|++|++++|
T Consensus        34 ~~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             TEEECTTSCCSSCCSSS-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCCcCccCCCC-CcCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            34566666677777632 24799999999997  67777778999999999999999998764 6899999999999999


Q ss_pred             ccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCccccc
Q 009194          119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      .++. + ..+.++++|++|++++|.++.+|.. ++++++|++|++++|.... ..|.. ++.+++|++|++++|.+....
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccc
Confidence            9987 4 6789999999999999999988875 8999999999999998332 23444 789999999999999876322


Q ss_pred             ccCCCccchhhccCCC-CccEEEeecCCCCCCCccccc--------------------------cCccEEEEEecCCCC-
Q 009194          195 VEGGSNASLVELERLT-ELTTLEIEVPDAEILPPDFVS--------------------------VELQRYKIRIGDGPE-  246 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~--------------------------~~L~~L~l~~~~~~~-  246 (540)
                      .     ..+..+.+++ .+..++++.+....++.....                          ..++...+....... 
T Consensus       190 ~-----~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~  264 (635)
T 4g8a_A          190 C-----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE  264 (635)
T ss_dssp             G-----GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred             c-----ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence            1     1222333332 233556665554444332211                          222222222211110 


Q ss_pred             ----CCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccc-----------------cccCc
Q 009194          247 ----DEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSV-----------------VHELD  305 (540)
Q Consensus       247 ----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----------------~~~~~  305 (540)
                          ............+....+....................+++.+...+.......                 ...+.
T Consensus       265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  344 (635)
T 4g8a_A          265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP  344 (635)
T ss_dssp             CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC
T ss_pred             cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcC
Confidence                000011222233333333221100000001111112234444444332211000                 00011


Q ss_pred             cCCCCccccEEeeccccCceeeeccccccccccCcccceeccccccccccccccc----------------------CCC
Q 009194          306 DGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQ----------------------LRE  363 (540)
Q Consensus       306 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----------------------~~~  363 (540)
                       ...++.|+.+.+.....-. .      .....+++|+.+++++.. +.......                      ...
T Consensus       345 -~~~l~~L~~l~l~~n~~~~-~------~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~  415 (635)
T 4g8a_A          345 -TLKLKSLKRLTFTSNKGGN-A------FSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN  415 (635)
T ss_dssp             -CCBCTTCCEEEEESCCSCC-B------CCCCBCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred             -cccchhhhhcccccccCCC-C------cccccccccccchhhccc-cccccccccchhhhhhhhhhhcccccccccccc
Confidence             2234444444444332110 0      133346667777665422 11110000                      000


Q ss_pred             CCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCC---CCCCCccC
Q 009194          364 DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDD---PVHQGIYC  440 (540)
Q Consensus       364 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~---~~~~~~~~  440 (540)
                      ...+++|+.+.+.++...... +......+++++.++++++ .+...........+.+..+ .+..+..   ..+.....
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L-~Ls~N~~~~~~~~~~~~~  492 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTE  492 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTT
T ss_pred             ccccccccchhhhhccccccc-ccccccccccccccccccc-ccccccccccccchhhhhh-hhhhcccccccCchhhhh
Confidence            334555555555554333222 2223455666666666653 3444433444444455444 3333211   12334556


Q ss_pred             CCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCC-------C
Q 009194          441 CQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK-------L  513 (540)
Q Consensus       441 ~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~-------L  513 (540)
                      +++|+.|++++| +++.+++ ..+.++++|++|+++++ +++.+.. ..      +..+++|++|++++..-       +
T Consensus       493 l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N-~l~~l~~-~~------~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          493 LRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHN-NFFSLDT-FP------YKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             CTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCBCCC-GG------GTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             ccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCC-cCCCCCh-hH------HhCCCCCCEEECCCCcCCCCCHHHH
Confidence            778888888887 5666643 34667888888888876 3444421 11      33578888888886532       3


Q ss_pred             CCC-CCCCceEeec
Q 009194          514 SSF-ASPEDVIHTE  526 (540)
Q Consensus       514 ~~~-~~l~~l~i~~  526 (540)
                      ..+ ++|+.|++.+
T Consensus       563 ~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          563 QHFPSSLAFLNLTQ  576 (635)
T ss_dssp             TCCCTTCCEEECTT
T ss_pred             HhhhCcCCEEEeeC
Confidence            333 4677787753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1e-23  Score=214.48  Aligned_cols=309  Identities=14%  Similarity=0.136  Sum_probs=177.2

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      .+++++++++++.+..+|.+..+++|++|++++|.+  ..++   +..+++|++|++++|.++.++  ++.+++|++|++
T Consensus        41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l--~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNI--TTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC  113 (457)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCC--SCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred             cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcC--CeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence            345566666665555555444555566666655554  2232   345555555555555555543  455555555555


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      ++|.++..+ ++++++|++|++++|.++.++  ++.+++|++|++++|..++.++   ++.+++|+.|++++|.+..   
T Consensus       114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~---  184 (457)
T 3bz5_A          114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE---  184 (457)
T ss_dssp             CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---
T ss_pred             CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---
Confidence            555555421 555555555555555555543  4555555555555554344442   4455555555555554431   


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccccccccc
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE  275 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (540)
                             + .++.+++|+.|++++|.+..++                          ...+++|+.|++++         
T Consensus       185 -------l-~l~~l~~L~~L~l~~N~l~~~~--------------------------l~~l~~L~~L~Ls~---------  221 (457)
T 3bz5_A          185 -------L-DVSQNKLLNRLNCDTNNITKLD--------------------------LNQNIQLTFLDCSS---------  221 (457)
T ss_dssp             -------C-CCTTCTTCCEEECCSSCCSCCC--------------------------CTTCTTCSEEECCS---------
T ss_pred             -------e-ccccCCCCCEEECcCCcCCeec--------------------------cccCCCCCEEECcC---------
Confidence                   1 1444555555555555443221                          22334455555444         


Q ss_pred             chhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccc
Q 009194          276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET  355 (540)
Q Consensus       276 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  355 (540)
                                        .. ++.    ++ +..+++|+.|+++++ .++.+       +...+++|+.|.+.+      
T Consensus       222 ------------------N~-l~~----ip-~~~l~~L~~L~l~~N-~l~~~-------~~~~l~~L~~L~l~~------  263 (457)
T 3bz5_A          222 ------------------NK-LTE----ID-VTPLTQLTYFDCSVN-PLTEL-------DVSTLSKLTTLHCIQ------  263 (457)
T ss_dssp             ------------------SC-CSC----CC-CTTCTTCSEEECCSS-CCSCC-------CCTTCTTCCEEECTT------
T ss_pred             ------------------Cc-ccc----cC-ccccCCCCEEEeeCC-cCCCc-------CHHHCCCCCEEeccC------
Confidence                              21 111    12 456788899999887 44433       455677777776643      


Q ss_pred             cccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCC
Q 009194          356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVH  435 (540)
Q Consensus       356 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~  435 (540)
                                  .+|+.|++++|..+..+|.    ..+++|+.|++++|+.+..++.    ..+.+..+           
T Consensus       264 ------------n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L-----------  312 (457)
T 3bz5_A          264 ------------TDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDC----QAAGITEL-----------  312 (457)
T ss_dssp             ------------CCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEEC----TTCCCSCC-----------
T ss_pred             ------------CCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceecc----CCCcceEe-----------
Confidence                        3567777777776666642    4678999999999988887762    11333333           


Q ss_pred             CCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecc
Q 009194          436 QGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC  478 (540)
Q Consensus       436 ~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C  478 (540)
                       .+..+++|+.|++.++ +++.++    +.++++|+.|++++.
T Consensus       313 -~l~~~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~N  349 (457)
T 3bz5_A          313 -DLSQNPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVNA  349 (457)
T ss_dssp             -CCTTCTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCSS
T ss_pred             -chhhcccCCEEECCCC-cccccc----cccCCcCcEEECCCC
Confidence             2345688999998886 466652    567889999998874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=6.4e-23  Score=211.03  Aligned_cols=312  Identities=18%  Similarity=0.130  Sum_probs=164.3

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~  118 (540)
                      +.++.+++.+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            34555555555555432 24566666666664  334333456666666666666666543 455666666666666666


Q ss_pred             ccCC-c-ccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      .++. + ..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++...++.+++|+.|++++|.+..   
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---  166 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTS---  166 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcc---
Confidence            6655 3 3456666666666666666543 3346666666666666665 344433335666666666666665541   


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccccccccccEEEEecccccccc
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL  273 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (540)
                           .....+.++++|+.|++.+|.+..++.....  ++|+.|.++.+........ ......+|+.|++++       
T Consensus       167 -----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~-------  233 (477)
T 2id5_A          167 -----IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLTSLSITH-------  233 (477)
T ss_dssp             -----CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCSEEEEES-------
T ss_pred             -----cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-ccccCccccEEECcC-------
Confidence                 1123355666666666666665444332111  3344443332211100000 011112444444444       


Q ss_pred             ccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccc
Q 009194          274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL  353 (540)
Q Consensus       274 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  353 (540)
                                          +. ++.....  .+..+++|+.|+++++ .++.+...    ....+++|+.|++.++ .+
T Consensus       234 --------------------n~-l~~~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l~~L~~L~L~~n-~l  284 (477)
T 2id5_A          234 --------------------CN-LTAVPYL--AVRHLVYLRFLNLSYN-PISTIEGS----MLHELLRLQEIQLVGG-QL  284 (477)
T ss_dssp             --------------------SC-CCSCCHH--HHTTCTTCCEEECCSS-CCCEECTT----SCTTCTTCCEEECCSS-CC
T ss_pred             --------------------Cc-ccccCHH--HhcCccccCeeECCCC-cCCccChh----hccccccCCEEECCCC-cc
Confidence                                32 1111100  1345666777777666 34444221    3455667777777663 34


Q ss_pred             cccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccc
Q 009194          354 ETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (540)
Q Consensus       354 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  405 (540)
                      +.+....   +..+++|++|+++++ .++.+++ ..+..+++|+.|++++++
T Consensus       285 ~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          285 AVVEPYA---FRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             SEECTTT---BTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred             ceECHHH---hcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence            4443332   456677777777775 5666643 334566777777776644

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=4.6e-25  Score=233.56  Aligned_cols=43  Identities=23%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             cCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccce
Q 009194          439 YCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEG  483 (540)
Q Consensus       439 ~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~  483 (540)
                      ..+++|+.|++++|+ +++.....+...+++|++|++++|. +++
T Consensus       485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            356778888888887 6554344555677888888888876 443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.6e-22  Score=205.61  Aligned_cols=291  Identities=15%  Similarity=0.110  Sum_probs=216.4

Q ss_pred             hhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEE
Q 009194           34 TIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL  113 (540)
Q Consensus        34 ~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  113 (540)
                      ...++++++++++|.+..++ +..+++|++|++++|.+  ..++   +.++++|++|++++|.+..+|  ++.+++|++|
T Consensus        61 ~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L  132 (457)
T 3bz5_A           61 EKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL  132 (457)
T ss_dssp             GGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             cccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence            34688999999999998886 56899999999999997  4443   589999999999999999886  8899999999


Q ss_pred             EcCCCccCCcccccCCCCCCEEEecCC-CCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194          114 CLDWCELADIAAIGQLKKLEILSLAYS-NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (540)
Q Consensus       114 ~l~~~~~~~~~~i~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (540)
                      ++++|.++.. .++++++|++|++++| .+..+  .++.+++|++|++++|. +..++   ++.+++|+.|++++|.+..
T Consensus       133 ~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          133 NCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             ECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCCCCCEEECcCCcCCe
Confidence            9999998884 3889999999999999 56566  47899999999999998 66676   6889999999999998761


Q ss_pred             ccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecccccc
Q 009194          193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS  271 (540)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (540)
                               .  .++.+++|+.|++++|.+..+|  +.. ++|+.|.++.+.+....    ...+++|+.|+++.     
T Consensus       206 ---------~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~-----  263 (457)
T 3bz5_A          206 ---------L--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQ-----  263 (457)
T ss_dssp             ---------C--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTT-----
T ss_pred             ---------e--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccC-----
Confidence                     1  4788999999999999988877  333 78888888665544331    34566677766554     


Q ss_pred             ccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccc
Q 009194          272 ILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLT  351 (540)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~  351 (540)
                                  .+|+.+++.++.....+    + .+.+++|+.|++++|..+..++.        ..++|+.|++++  
T Consensus       264 ------------n~L~~L~l~~n~~~~~~----~-~~~l~~L~~L~Ls~n~~l~~l~~--------~~~~L~~L~l~~--  316 (457)
T 3bz5_A          264 ------------TDLLEIDLTHNTQLIYF----Q-AEGCRKIKELDVTHNTQLYLLDC--------QAAGITELDLSQ--  316 (457)
T ss_dssp             ------------CCCSCCCCTTCTTCCEE----E-CTTCTTCCCCCCTTCTTCCEEEC--------TTCCCSCCCCTT--
T ss_pred             ------------CCCCEEECCCCccCCcc----c-ccccccCCEEECCCCcccceecc--------CCCcceEechhh--
Confidence                        34556666655533322    2 45677788888877765555431        234444444433  


Q ss_pred             cccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccccccc
Q 009194          352 NLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM  409 (540)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  409 (540)
                                     +++|++|+++++ +++.++    +..+++|+.|++++ +++++
T Consensus       317 ---------------~~~L~~L~L~~N-~l~~l~----l~~l~~L~~L~l~~-N~l~~  353 (457)
T 3bz5_A          317 ---------------NPKLVYLYLNNT-ELTELD----VSHNTKLKSLSCVN-AHIQD  353 (457)
T ss_dssp             ---------------CTTCCEEECTTC-CCSCCC----CTTCTTCSEEECCS-SCCCB
T ss_pred             ---------------cccCCEEECCCC-cccccc----cccCCcCcEEECCC-CCCCC
Confidence                           356667776664 455542    45677777777776 44544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.6e-23  Score=219.64  Aligned_cols=304  Identities=14%  Similarity=0.158  Sum_probs=209.7

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC-c-ccccCCCCCC
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLE  133 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~  133 (540)
                      .+.+++.+.+.++.+  ..++..+|.++++|++|++++|.+..++ ..++.+++|++|++++|.++. + ..++++++|+
T Consensus        49 ~l~~l~~l~l~~~~l--~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEE--SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCC--CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            667888999988875  7788888888999999999999888755 478889999999999998887 3 6678899999


Q ss_pred             EEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCc
Q 009194          134 ILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL  212 (540)
Q Consensus       134 ~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L  212 (540)
                      +|++++|.+..+|.. ++.+++|++|++++|. +..++...++.+++|+.|++++|.+..           ..++.+++|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~l~~L  194 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIPSL  194 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB-----------CCGGGCTTC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC-----------cChhhhhhh
Confidence            999999988888877 4889999999999887 555655557889999999998887751           125567888


Q ss_pred             cEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeec
Q 009194          213 TTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLE  292 (540)
Q Consensus       213 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  292 (540)
                      +.|++++|.+..++.   ..+|+.|.++.+.+....    ....++|+.|++++    ..+..+.+ ...+++|+.|++.
T Consensus       195 ~~L~l~~n~l~~l~~---~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~L~~----n~l~~~~~-l~~l~~L~~L~Ls  262 (597)
T 3oja_B          195 FHANVSYNLLSTLAI---PIAVEELDASHNSINVVR----GPVNVELTILKLQH----NNLTDTAW-LLNYPGLVEVDLS  262 (597)
T ss_dssp             SEEECCSSCCSEEEC---CTTCSEEECCSSCCCEEE----CSCCSCCCEEECCS----SCCCCCGG-GGGCTTCSEEECC
T ss_pred             hhhhcccCccccccC---CchhheeeccCCcccccc----cccCCCCCEEECCC----CCCCCChh-hccCCCCCEEECC
Confidence            899988887654321   156777777655433221    12235777777776    23332222 2345677777776


Q ss_pred             cccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCe
Q 009194          293 TLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRI  372 (540)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~  372 (540)
                      ++.-......   .+..+++|+.|+++++ .++.++.     ....+|+|+.|+++++ .++.++..    .+.+++|++
T Consensus       263 ~N~l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~~L~Ls~N-~l~~i~~~----~~~l~~L~~  328 (597)
T 3oja_B          263 YNELEKIMYH---PFVKMQRLERLYISNN-RLVALNL-----YGQPIPTLKVLDLSHN-HLLHVERN----QPQFDRLEN  328 (597)
T ss_dssp             SSCCCEEESG---GGTTCSSCCEEECTTS-CCCEEEC-----SSSCCTTCCEEECCSS-CCCCCGGG----HHHHTTCSE
T ss_pred             CCccCCCCHH---HhcCccCCCEEECCCC-CCCCCCc-----ccccCCCCcEEECCCC-CCCccCcc----cccCCCCCE
Confidence            6542221111   1456777777777776 4554432     3355777777777764 44454433    455777777


Q ss_pred             EEEeeCCCCccccChHHHhhcccccEEEEcccc
Q 009194          373 INVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCD  405 (540)
Q Consensus       373 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  405 (540)
                      |++++| .++.++    ...+++|+.|++++++
T Consensus       329 L~L~~N-~l~~~~----~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          329 LYLDHN-SIVTLK----LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EECCSS-CCCCCC----CCTTCCCSEEECCSSC
T ss_pred             EECCCC-CCCCcC----hhhcCCCCEEEeeCCC
Confidence            777775 455553    3456777777777754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=6.2e-25  Score=232.54  Aligned_cols=404  Identities=15%  Similarity=0.079  Sum_probs=235.8

Q ss_pred             CCCCccEEEcccCCCC-------------CccccHHHHhcCccCcEEEcCCCCCCC-CCccccc-CCC-CcEEEcCCCc-
Q 009194           57 QCPNLQLFLLYTEGNG-------------PMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGR-LIN-LQTLCLDWCE-  119 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~-------------~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~-l~~-L~~L~l~~~~-  119 (540)
                      .+++|++|.+.++...             .......++.++++|++|+++++.+.. .+..+.. +++ |++|++++|. 
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~  150 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG  150 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence            6778888888765320             011223444578888888888887653 2333433 344 8888888876 


Q ss_pred             cCC--c-ccccCCCCCCEEEecCCCCcc-----cchhcCCCCCCCEEECCCCccc----cccchhhhhcCCccceEEccC
Q 009194          120 LAD--I-AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWL----EVIAPNVISKLSQLEELYMGN  187 (540)
Q Consensus       120 ~~~--~-~~i~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~  187 (540)
                      +..  . ....++++|++|++++|.+..     ++.....+++|++|+++++...    ..++. ++.++++|+.|++++
T Consensus       151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~  229 (592)
T 3ogk_B          151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGD  229 (592)
T ss_dssp             EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSS
T ss_pred             cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccC
Confidence            332  2 334478888888888886542     3344566788888888877632    22332 256788888888888


Q ss_pred             CCcccccccCCCccchhhccCCCCccEEEeecCCCC----CCCccccc-cCccEEEEEecCCCCCCCCccccccccccEE
Q 009194          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE----ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLM  262 (540)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  262 (540)
                      |.+.         .....+.++++|+.|++..+...    .....+.. ++|+.+.+....  ..........+++|++|
T Consensus       230 ~~~~---------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          230 FEIL---------ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKL  298 (592)
T ss_dssp             CBGG---------GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEE
T ss_pred             ccHH---------HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEE
Confidence            7654         24455677788888888754321    12222222 677777664321  11111124456778888


Q ss_pred             EEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeecc----------ccCceeeecccc
Q 009194          263 MLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTD----------CSEILHIVGSVR  332 (540)
Q Consensus       263 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~~  332 (540)
                      +++++. .+... .......+++|+.|++.+.  +.+..... ....+++|++|++.+          |..++....   
T Consensus       299 ~Ls~~~-l~~~~-~~~~~~~~~~L~~L~L~~~--~~~~~l~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~---  370 (592)
T 3ogk_B          299 DLLYAL-LETED-HCTLIQKCPNLEVLETRNV--IGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL---  370 (592)
T ss_dssp             EETTCC-CCHHH-HHHHHTTCTTCCEEEEEGG--GHHHHHHH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH---
T ss_pred             ecCCCc-CCHHH-HHHHHHhCcCCCEEeccCc--cCHHHHHH-HHHhCCCCCEEEeecCccccccccccCccCHHHH---
Confidence            887733 11111 1111234577777777622  21110000 023567788888874          554442211   


Q ss_pred             ccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEee---CCCCccccCh----HHHhhcccccEEEEcccc
Q 009194          333 RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS---CRKLKYLFSF----SMAKNLLRLQKVKVEDCD  405 (540)
Q Consensus       333 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~---c~~l~~~~~~----~~~~~l~~L~~L~l~~c~  405 (540)
                      ......+++|++|.+ .|..+++.....+  ...+++|++|.+.+   |+.+++.|..    ..+..+++|++|++++|.
T Consensus       371 ~~l~~~~~~L~~L~l-~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          371 IALAQGCQELEYMAV-YVSDITNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHCTTCSEEEE-EESCCCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHhhCccCeEEEe-ecCCccHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            002345677888877 4555555433321  22367788888874   5566665322    234567778888887765


Q ss_pred             c-cccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEeccccccee
Q 009194          406 D-LKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGV  484 (540)
Q Consensus       406 ~-l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~  484 (540)
                      . +++..                      .......+++|+.|++.+|. +++.....+..++++|++|++++|+ +++.
T Consensus       448 ~~l~~~~----------------------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~  503 (592)
T 3ogk_B          448 GGLTDLG----------------------LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSER  503 (592)
T ss_dssp             GGCCHHH----------------------HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHH
T ss_pred             CCccHHH----------------------HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHH
Confidence            4 33221                      00111247899999999885 6654445567888999999999998 5442


Q ss_pred             ccccccCCCCccccccccceeecccCCCCC
Q 009194          485 VNTTTLGGRDEFKVFPKLHYLSLHWLPKLS  514 (540)
Q Consensus       485 ~~~~~~~~~~~~~~~~~L~~L~l~~~p~L~  514 (540)
                      .....      ...+++|++|++++|+ ++
T Consensus       504 ~~~~~------~~~l~~L~~L~ls~n~-it  526 (592)
T 3ogk_B          504 AIAAA------VTKLPSLRYLWVQGYR-AS  526 (592)
T ss_dssp             HHHHH------HHHCSSCCEEEEESCB-CC
T ss_pred             HHHHH------HHhcCccCeeECcCCc-CC
Confidence            21111      2368999999999997 55

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.91  E-value=1.3e-22  Score=208.87  Aligned_cols=304  Identities=18%  Similarity=0.144  Sum_probs=227.6

Q ss_pred             cchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC
Q 009194           24 VADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP  101 (540)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  101 (540)
                      +..++.+|. .+++++++|++++|.+..++.  +.++++|++|++++|.+  ..+....|.++++|++|++++|.+..+|
T Consensus        20 ~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~   96 (477)
T 2id5_A           20 RKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIP   96 (477)
T ss_dssp             SCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccC
Confidence            445555564 467899999999999977753  44899999999999986  5554455789999999999999999887


Q ss_pred             c-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhcC
Q 009194          102 S-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKL  177 (540)
Q Consensus       102 ~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l  177 (540)
                      . .+.++++|++|++++|.+..  +..+.++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...+..+
T Consensus        97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l  175 (477)
T 2id5_A           97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHL  175 (477)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTC
T ss_pred             cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhccc
Confidence            6 46899999999999999886  578999999999999999988654 468999999999999998 778887778999


Q ss_pred             CccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCC-CCCCCccccc-cCccEEEEEecCCCCCCCCccccc
Q 009194          178 SQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVK  255 (540)
Q Consensus       178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~  255 (540)
                      ++|+.|++++|.+...        ....+..+++|+.|++++|. .+.++..... .+|+.|.++.+.+..... .....
T Consensus       176 ~~L~~L~l~~n~i~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~  246 (477)
T 2id5_A          176 HGLIVLRLRHLNINAI--------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRH  246 (477)
T ss_dssp             TTCCEEEEESCCCCEE--------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH-HHHTT
T ss_pred             CCCcEEeCCCCcCcEe--------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH-HHhcC
Confidence            9999999999877621        23457889999999999987 4556655444 799999998776543310 11234


Q ss_pred             cccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccc
Q 009194          256 SEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVR  335 (540)
Q Consensus       256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  335 (540)
                      +++|+.|++++                           .. +.....  ..+..+++|+.|+++++ +++.+...    .
T Consensus       247 l~~L~~L~Ls~---------------------------n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~----~  291 (477)
T 2id5_A          247 LVYLRFLNLSY---------------------------NP-ISTIEG--SMLHELLRLQEIQLVGG-QLAVVEPY----A  291 (477)
T ss_dssp             CTTCCEEECCS---------------------------SC-CCEECT--TSCTTCTTCCEEECCSS-CCSEECTT----T
T ss_pred             ccccCeeECCC---------------------------Cc-CCccCh--hhccccccCCEEECCCC-ccceECHH----H
Confidence            55566666554                           22 111111  11456788888888877 45544221    4


Q ss_pred             cccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194          336 CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCR  379 (540)
Q Consensus       336 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  379 (540)
                      ...+++|+.|+++++ .++.++...   +..+++|++|++.+++
T Consensus       292 ~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          292 FRGLNYLRVLNVSGN-QLTTLEESV---FHSVGNLETLILDSNP  331 (477)
T ss_dssp             BTTCTTCCEEECCSS-CCSCCCGGG---BSCGGGCCEEECCSSC
T ss_pred             hcCcccCCEEECCCC-cCceeCHhH---cCCCcccCEEEccCCC
Confidence            567788888888874 566665543   4567888888888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=7.2e-23  Score=208.08  Aligned_cols=391  Identities=15%  Similarity=0.042  Sum_probs=195.0

Q ss_pred             cCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCcc-------------CcEEEcCCCCCCCCC
Q 009194           36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEG-------------LKVLQFPGIGSSSLP  101 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~l~  101 (540)
                      ...+++++++++.+..+|..+ ++++|++|++++|.. ...+|..+ +++++             +++|+++++.++.+|
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~-~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEW-ERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHH-HHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcc-cccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            567899999999888888755 889999999998876 44555443 45554             588999999888887


Q ss_pred             cccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCcc
Q 009194          102 SSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL  180 (540)
Q Consensus       102 ~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  180 (540)
                      ..   .++|++|++++|.++. |..   +.+|++|++++|.++.+|..   .++|++|++++|. +..+|.  ++++++|
T Consensus        88 ~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp~--~~~l~~L  155 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLPE--LQNSSFL  155 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCCC--CTTCTTC
T ss_pred             CC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCcc--cCCCCCC
Confidence            63   4689999999998887 432   47899999999888876642   2689999999887 566773  8889999


Q ss_pred             ceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccc
Q 009194          181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEAS  259 (540)
Q Consensus       181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L  259 (540)
                      ++|++++|.+...         +.   ...+|++|++++|.+..++. +.. ++|+.|.++.+.....     ....++|
T Consensus       156 ~~L~l~~N~l~~l---------p~---~~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l-----~~~~~~L  217 (454)
T 1jl5_A          156 KIIDVDNNSLKKL---------PD---LPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKL-----PDLPLSL  217 (454)
T ss_dssp             CEEECCSSCCSCC---------CC---CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSC-----CCCCTTC
T ss_pred             CEEECCCCcCccc---------CC---CcccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcC-----CCCcCcc
Confidence            9999998876521         11   12488999999888777763 333 7777777765544332     1122466


Q ss_pred             cEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccC
Q 009194          260 RLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVF  339 (540)
Q Consensus       260 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  339 (540)
                      +.|+++++.- ..++   . ...+++|+.|++.+..- +.    ++  ..+++|+.|+++++ .++.++        ..+
T Consensus       218 ~~L~l~~n~l-~~lp---~-~~~l~~L~~L~l~~N~l-~~----l~--~~~~~L~~L~l~~N-~l~~l~--------~~~  276 (454)
T 1jl5_A          218 ESIVAGNNIL-EELP---E-LQNLPFLTTIYADNNLL-KT----LP--DLPPSLEALNVRDN-YLTDLP--------ELP  276 (454)
T ss_dssp             CEEECCSSCC-SSCC---C-CTTCTTCCEEECCSSCC-SS----CC--SCCTTCCEEECCSS-CCSCCC--------CCC
T ss_pred             cEEECcCCcC-Cccc---c-cCCCCCCCEEECCCCcC-Cc----cc--ccccccCEEECCCC-cccccC--------ccc
Confidence            6666665321 2221   1 12345555555554321 11    11  12355566666555 233221        112


Q ss_pred             cccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCC
Q 009194          340 PLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPP  419 (540)
Q Consensus       340 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  419 (540)
                      ++|+.|+++++ .++.++.       ..++|++|+++++ .++.++.     ..++|++|+++++ +++.++        
T Consensus       277 ~~L~~L~ls~N-~l~~l~~-------~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N-~l~~lp--------  333 (454)
T 1jl5_A          277 QSLTFLDVSEN-IFSGLSE-------LPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNN-KLIELP--------  333 (454)
T ss_dssp             TTCCEEECCSS-CCSEESC-------CCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSS-CCSCCC--------
T ss_pred             CcCCEEECcCC-ccCcccC-------cCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCC-cccccc--------
Confidence            45566655553 2333221       1145556665554 3443321     1135556665553 333221        


Q ss_pred             CccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceec-cccccCC------
Q 009194          420 TTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVV-NTTTLGG------  492 (540)
Q Consensus       420 ~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~-~~~~~~~------  492 (540)
                                         ..+++|+.|+++++ +++.++.     .+++|++|+++++.- +.++ ...+...      
T Consensus       334 -------------------~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~l-~~l~~ip~~l~~L~~n~~  387 (454)
T 1jl5_A          334 -------------------ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNPL-REFPDIPESVEDLRMNSH  387 (454)
T ss_dssp             -------------------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCC-SSCCCCCTTCCEEECCC-
T ss_pred             -------------------ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCCC-CcCCCChHHHHhhhhccc
Confidence                               12578888888887 5666654     358888888887642 2211 0111110      


Q ss_pred             -CCccccccccceeecccCCCCC--CCC-CCCceEeecCC
Q 009194          493 -RDEFKVFPKLHYLSLHWLPKLS--SFA-SPEDVIHTEMQ  528 (540)
Q Consensus       493 -~~~~~~~~~L~~L~l~~~p~L~--~~~-~l~~l~i~~c~  528 (540)
                       ..-...+++|++|++++.+--.  .+| +++.+.+.+|.
T Consensus       388 ~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~~  427 (454)
T 1jl5_A          388 LAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSER  427 (454)
T ss_dssp             ----------------------------------------
T ss_pred             ccccccccCcCCEEECCCCcCCccccchhhHhheeCcCcc
Confidence             0000112788999988765322  343 46777777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.90  E-value=1.5e-22  Score=202.69  Aligned_cols=304  Identities=17%  Similarity=0.179  Sum_probs=238.2

Q ss_pred             cCCCeEEEccCCCCCCCCCc--CCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcE
Q 009194           36 QKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQT  112 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~  112 (540)
                      .++++++++.++.+..+|..  ..+++|++|++++|.+  ..++...|.++++|++|++++|.+..++ ..++++++|++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            57899999999999888874  3899999999999986  5566555789999999999999998765 56899999999


Q ss_pred             EEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194          113 LCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (540)
Q Consensus       113 L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (540)
                      |++++|.++. | ..+.++++|++|++++|.+..++. .+..+++|++|++++|. +..++   ++.+++|+.|+++++.
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeeccccc
Confidence            9999999988 5 446899999999999999987754 48999999999999988 55554   6789999999999987


Q ss_pred             cccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccc
Q 009194          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK  269 (540)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  269 (540)
                      +.             .+...++|+.|++++|.+..++.. ..++|+.|.+..+.....   .....+++|++|+++++.-
T Consensus       198 l~-------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l  260 (390)
T 3o6n_A          198 LS-------------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL  260 (390)
T ss_dssp             CS-------------EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC
T ss_pred             cc-------------ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcC
Confidence            65             234456899999999998777543 237899999987765543   3467889999999998432


Q ss_pred             ccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccc
Q 009194          270 VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMF  349 (540)
Q Consensus       270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  349 (540)
                       ..+  .......+++|+.|.+.+.. ++.+...   ...+++|+.|+++++ .++.++.     ....+++|+.|++++
T Consensus       261 -~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~  327 (390)
T 3o6n_A          261 -EKI--MYHPFVKMQRLERLYISNNR-LVALNLY---GQPIPTLKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDH  327 (390)
T ss_dssp             -CEE--ESGGGTTCSSCCEEECCSSC-CCEEECS---SSCCTTCCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCS
T ss_pred             -CCc--ChhHccccccCCEEECCCCc-CcccCcc---cCCCCCCCEEECCCC-cceecCc-----cccccCcCCEEECCC
Confidence             222  12222346899999998764 3333221   457899999999998 5665532     446789999999998


Q ss_pred             cccccccccccCCCCCCCCCCCeEEEeeCCCCcc
Q 009194          350 LTNLETICYSQLREDQSFSNLRIINVDSCRKLKY  383 (540)
Q Consensus       350 c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  383 (540)
                      +. ++.++      ...+++|++|++++++ +..
T Consensus       328 N~-i~~~~------~~~~~~L~~L~l~~N~-~~~  353 (390)
T 3o6n_A          328 NS-IVTLK------LSTHHTLKNLTLSHND-WDC  353 (390)
T ss_dssp             SC-CCCCC------CCTTCCCSEEECCSSC-EEH
T ss_pred             Cc-cceeC------chhhccCCEEEcCCCC-ccc
Confidence            54 55553      5668999999999964 443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=1.4e-24  Score=229.85  Aligned_cols=407  Identities=15%  Similarity=0.100  Sum_probs=205.5

Q ss_pred             cCCCeEEEccCCCC-CCCC---------------CcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCC-CC
Q 009194           36 QKDPIAISLPHRDI-QELP---------------ERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI-GS   97 (540)
Q Consensus        36 ~~~l~~l~l~~~~~-~~l~---------------~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~   97 (540)
                      .++++++++.++.. ..+.               ... .+++|++|+++++.. ....+..+...+++|++|++.+| .+
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            45678888877542 1111               111 567788888887765 44444444446788888888877 44


Q ss_pred             CC--CCcccccCCCCcEEEcCCCccCC--cccc----cCCCCCCEEEecCCC--Cc--ccchhcCCCCCCCEEECCCCcc
Q 009194           98 SS--LPSSLGRLINLQTLCLDWCELAD--IAAI----GQLKKLEILSLAYSN--IN--QLPVEIGQLTRLQLLDLSNCWW  165 (540)
Q Consensus        98 ~~--l~~~l~~l~~L~~L~l~~~~~~~--~~~i----~~l~~L~~L~l~~~~--~~--~lp~~~~~l~~L~~L~l~~~~~  165 (540)
                      ..  ++....++++|++|++++|.+++  +..+    ..+++|+.|++++|.  +.  .++..+..+++|++|++++|..
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~  223 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP  223 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence            33  44444577888888888877554  2222    256688888887775  22  2333345567888888887754


Q ss_pred             ccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEE-EeecCCCCCCCccccc-cCccEEEEEecC
Q 009194          166 LEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL-EIEVPDAEILPPDFVS-VELQRYKIRIGD  243 (540)
Q Consensus       166 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~-~~L~~L~l~~~~  243 (540)
                      ...++.. +.++++|++|++..+.......  ........+.++++|+.| .+.......++..... ++|+.|.++.+.
T Consensus       224 ~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  300 (594)
T 2p1m_B          224 LEKLATL-LQRAPQLEELGTGGYTAEVRPD--VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT  300 (594)
T ss_dssp             HHHHHHH-HHHCTTCSEEECSBCCCCCCHH--HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred             HHHHHHH-HhcCCcceEcccccccCccchh--hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence            5555544 6777888888766543210000  001223456677777777 3333333333322222 666666665444


Q ss_pred             CCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeecc--------ccCcccccccCccCCCCccccE
Q 009194          244 GPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLET--------LEGVQSVVHELDDGEGFPRLKR  315 (540)
Q Consensus       244 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~~~~~~~~~~L~~  315 (540)
                      ............+++|++|++.++.  .. .....+...+++|+.|++.+        +..+++.... .....+++|+.
T Consensus       301 l~~~~l~~~~~~~~~L~~L~l~~~~--~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~-~l~~~~~~L~~  376 (594)
T 2p1m_B          301 VQSYDLVKLLCQCPKLQRLWVLDYI--ED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV-SVSMGCPKLES  376 (594)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEGGG--HH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH-HHHHHCTTCCE
T ss_pred             CCHHHHHHHHhcCCCcCEEeCcCcc--CH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH-HHHHhchhHHH
Confidence            2111000112355666666666531  10 00111222345666666632        2222211000 00123566666


Q ss_pred             EeeccccCceeeeccccccccccCcccceeccc-----ccccccccccc-cCC-CCCCCCCCCeEEEeeCCCCccccChH
Q 009194          316 LLVTDCSEILHIVGSVRRVRCEVFPLLEALSLM-----FLTNLETICYS-QLR-EDQSFSNLRIINVDSCRKLKYLFSFS  388 (540)
Q Consensus       316 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~~~~-~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~  388 (540)
                      |.+ +|..++.....   .....+|+|+.|++.     +|..+++.+.. .+. ....+++|++|++++  .+++.....
T Consensus       377 L~~-~~~~l~~~~~~---~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~  450 (594)
T 2p1m_B          377 VLY-FCRQMTNAALI---TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY  450 (594)
T ss_dssp             EEE-EESCCCHHHHH---HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHH
T ss_pred             HHH-hcCCcCHHHHH---HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHH
Confidence            643 33333321100   011235666666666     44555432211 000 023455666666644  444432222


Q ss_pred             HHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcC
Q 009194          389 MAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLG  468 (540)
Q Consensus       389 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~  468 (540)
                      ....+++|+.|++++|. +++..                      .......+++|+.|++++|+- ++.+...+...++
T Consensus       451 l~~~~~~L~~L~L~~~~-i~~~~----------------------~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~  506 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAG-DSDLG----------------------MHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLE  506 (594)
T ss_dssp             HHHHCTTCCEEEEESCC-SSHHH----------------------HHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGG
T ss_pred             HHHhchhccEeeccCCC-CcHHH----------------------HHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCC
Confidence            23335666666666554 32221                      000112467788888888764 4443334456677


Q ss_pred             CCcEEEEecccc
Q 009194          469 QLQHLEIRNCRS  480 (540)
Q Consensus       469 ~L~~L~i~~C~~  480 (540)
                      +|++|++++|+.
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            888888888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=9.6e-22  Score=207.58  Aligned_cols=301  Identities=18%  Similarity=0.188  Sum_probs=236.7

Q ss_pred             cCCCeEEEccCCCCCCCCCcC--CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcE
Q 009194           36 QKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQT  112 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~  112 (540)
                      ..+++.+++.++.+..+|...  .+++|++|++++|.+  ..++...|.++++|++|++++|.+..+|. .++++++|++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            578899999999998888743  899999999999987  55555557899999999999999988764 5699999999


Q ss_pred             EEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194          113 LCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (540)
Q Consensus       113 L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (540)
                      |++++|.++. | ..++++++|++|++++|.+..++. .++.+++|++|++++|. +..++   ++.+++|+.|++++|.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSC
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCc
Confidence            9999999988 5 456999999999999999987665 58999999999999998 56665   5779999999999987


Q ss_pred             cccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccc
Q 009194          190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKK  269 (540)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  269 (540)
                      +.             .+...++|+.|++++|.+..++... .++|+.|.++.+.+...   .....+++|+.|+++++.-
T Consensus       204 l~-------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l  266 (597)
T 3oja_B          204 LS-------------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL  266 (597)
T ss_dssp             CS-------------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC
T ss_pred             cc-------------cccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCcc
Confidence            65             2445568999999999987666542 37899999987765543   3367889999999998432


Q ss_pred             ccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccc
Q 009194          270 VSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMF  349 (540)
Q Consensus       270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~  349 (540)
                       ..+  .......+++|+.|.+.++. +..+...   ...+|+|+.|+++++ .++.++.     ....+++|+.|++++
T Consensus       267 -~~~--~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---~~~l~~L~~L~Ls~N-~l~~i~~-----~~~~l~~L~~L~L~~  333 (597)
T 3oja_B          267 -EKI--MYHPFVKMQRLERLYISNNR-LVALNLY---GQPIPTLKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDH  333 (597)
T ss_dssp             -CEE--ESGGGTTCSSCCEEECTTSC-CCEEECS---SSCCTTCCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCS
T ss_pred             -CCC--CHHHhcCccCCCEEECCCCC-CCCCCcc---cccCCCCcEEECCCC-CCCccCc-----ccccCCCCCEEECCC
Confidence             222  12222346899999998754 3333221   456999999999998 4555532     456789999999998


Q ss_pred             cccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194          350 LTNLETICYSQLREDQSFSNLRIINVDSCR  379 (540)
Q Consensus       350 c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  379 (540)
                      +. +..++      .+.+++|++|++++++
T Consensus       334 N~-l~~~~------~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          334 NS-IVTLK------LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             SC-CCCCC------CCTTCCCSEEECCSSC
T ss_pred             CC-CCCcC------hhhcCCCCEEEeeCCC
Confidence            54 55443      5678999999999975

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=5e-24  Score=225.69  Aligned_cols=420  Identities=13%  Similarity=0.070  Sum_probs=234.1

Q ss_pred             CeEEEccCCCCCCCCC-cCCCCCccEEEcccCCCCCccc--------------cHHHHhcCccCcEEEcCCCCCCC-CCc
Q 009194           39 PIAISLPHRDIQELPE-RLQCPNLQLFLLYTEGNGPMQV--------------SDHFFEGMEGLKVLQFPGIGSSS-LPS  102 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~l~~L~~L~l~~~~~~~-l~~  102 (540)
                      .+++++..+....... ...+++|++|.+.++.. ..++              ...++..+++|++|+++++.+.. .+.
T Consensus        45 ~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~  123 (594)
T 2p1m_B           45 RRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPH-FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE  123 (594)
T ss_dssp             CCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCG-GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             ceEEeeccccccCHHHHHhhCCCceEEeccCCCc-hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence            4566666543221111 22778899999998763 1111              23445678999999999988763 233


Q ss_pred             ccc-cCCCCcEEEcCCCc-cCC--c-ccccCCCCCCEEEecCCCCcc-----cchhcCCCCCCCEEECCCCc--cccccc
Q 009194          103 SLG-RLINLQTLCLDWCE-LAD--I-AAIGQLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCW--WLEVIA  170 (540)
Q Consensus       103 ~l~-~l~~L~~L~l~~~~-~~~--~-~~i~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~--~~~~~~  170 (540)
                      .+. .+++|++|++++|. ++.  + ..+.++++|++|++++|.++.     ++.....+++|++|++++|.  ......
T Consensus       124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (594)
T 2p1m_B          124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL  203 (594)
T ss_dssp             HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred             HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence            343 68899999999984 554  3 444578999999999987552     33444578899999998875  111112


Q ss_pred             hhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC-------CCCccccc-cCccEEEEEec
Q 009194          171 PNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-------ILPPDFVS-VELQRYKIRIG  242 (540)
Q Consensus       171 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-------~~~~~~~~-~~L~~L~l~~~  242 (540)
                      ..++.++++|++|++++|...        ......+..+++|+.|++..+...       .++..+.. ++|+.+.-. .
T Consensus       204 ~~l~~~~~~L~~L~L~~~~~~--------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~-~  274 (594)
T 2p1m_B          204 ERLVTRCPNLKSLKLNRAVPL--------EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF-W  274 (594)
T ss_dssp             HHHHHHCTTCCEEECCTTSCH--------HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECC-B
T ss_pred             HHHHHhCCCCcEEecCCCCcH--------HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCC-c
Confidence            222456799999999887322        124455677889999987765421       11112212 555555210 0


Q ss_pred             CCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccc-cccCccCCCCccccEEeeccc
Q 009194          243 DGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSV-VHELDDGEGFPRLKRLLVTDC  321 (540)
Q Consensus       243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~  321 (540)
                      .............+++|++|+++++. .+... ...+...+++|+.|.+.++  +.+. ...+  ...+++|+.|++.+|
T Consensus       275 ~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~-l~~~~~~~~~L~~L~l~~~--~~~~~l~~l--~~~~~~L~~L~L~~~  348 (594)
T 2p1m_B          275 DAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYD-LVKLLCQCPKLQRLWVLDY--IEDAGLEVL--ASTCKDLRELRVFPS  348 (594)
T ss_dssp             TCCGGGGGGGHHHHTTCCEEECTTCC-CCHHH-HHHHHTTCTTCCEEEEEGG--GHHHHHHHH--HHHCTTCCEEEEECS
T ss_pred             ccchhhHHHHHHhhCCCCEEEccCCC-CCHHH-HHHHHhcCCCcCEEeCcCc--cCHHHHHHH--HHhCCCCCEEEEecC
Confidence            00000000012245677777776633 11110 1111223466666666655  1111 0000  223666777766332


Q ss_pred             --------cCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEe-----eCCCCccccChH
Q 009194          322 --------SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD-----SCRKLKYLFSFS  388 (540)
Q Consensus       322 --------~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~~~~~  388 (540)
                              ..++..   ........+++|+.|.+ +|..+++.....+  ...+++|++|.+.     +|..+++.+...
T Consensus       349 ~~~g~~~~~~l~~~---~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~  422 (594)
T 2p1m_B          349 EPFVMEPNVALTEQ---GLVSVSMGCPKLESVLY-FCRQMTNAALITI--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDI  422 (594)
T ss_dssp             CTTCSSCSSCCCHH---HHHHHHHHCTTCCEEEE-EESCCCHHHHHHH--HHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred             cccccccCCCCCHH---HHHHHHHhchhHHHHHH-hcCCcCHHHHHHH--HhhCCCcceeEeecccCCCcccccCCchhh
Confidence                    222211   00001123566666633 4455544332221  2235667777776     556666443221


Q ss_pred             ----HHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhh
Q 009194          389 ----MAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMV  464 (540)
Q Consensus       389 ----~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~  464 (540)
                          .+..+++|++|++++  .+++...                      ......+++|+.|++.+|. +++.....+.
T Consensus       423 ~~~~l~~~~~~L~~L~L~~--~l~~~~~----------------------~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~  477 (594)
T 2p1m_B          423 GFGAIVEHCKDLRRLSLSG--LLTDKVF----------------------EYIGTYAKKMEMLSVAFAG-DSDLGMHHVL  477 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCS--SCCHHHH----------------------HHHHHHCTTCCEEEEESCC-SSHHHHHHHH
T ss_pred             HHHHHHhhCCCccEEeecC--cccHHHH----------------------HHHHHhchhccEeeccCCC-CcHHHHHHHH
Confidence                234566677776654  3333210                      0011137899999999986 6555444455


Q ss_pred             hhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCC
Q 009194          465 NSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK  512 (540)
Q Consensus       465 ~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~  512 (540)
                      .++++|++|++++|+. ++......      ...+++|++|++++|+.
T Consensus       478 ~~~~~L~~L~L~~n~~-~~~~~~~~------~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPF-GDKALLAN------ASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHCTTCCEEEEESCSC-CHHHHHHT------GGGGGGSSEEEEESSCC
T ss_pred             hcCCCcCEEECcCCCC-cHHHHHHH------HHhCCCCCEEeeeCCCC
Confidence            7899999999999985 33221111      23589999999999987

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=1.5e-20  Score=191.08  Aligned_cols=300  Identities=17%  Similarity=0.104  Sum_probs=198.5

Q ss_pred             CCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcC
Q 009194           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (540)
Q Consensus        37 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~  116 (540)
                      .++++++++++.+..+|..  .++|++|++++|.+  ..++.    .+++|++|++++|.+..+|..   .++|++|+++
T Consensus        71 ~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l--~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~  139 (454)
T 1jl5_A           71 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSL--TELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVS  139 (454)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC--SSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECC
T ss_pred             cCCCEEEecCCccccCCCC--cCCCCEEEccCCcC--Ccccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECc
Confidence            3568888888888777763  46888888888876  33543    357888888888887776642   2578888888


Q ss_pred             CCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccccc
Q 009194          117 WCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE  196 (540)
Q Consensus       117 ~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (540)
                      +|.++..+.++++++|++|++++|.++.+|..+   .+|++|++++|. +..+|.  ++.+++|+.|++++|.+...   
T Consensus       140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~~l---  210 (454)
T 1jl5_A          140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKKL---  210 (454)
T ss_dssp             SSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSC---
T ss_pred             CCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCCcC---
Confidence            888777336888888888888888887777543   588888888887 556663  78888888888888876511   


Q ss_pred             CCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecccccccccc
Q 009194          197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE  275 (540)
Q Consensus       197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (540)
                             +.  ..++|+.|++++|....+|. +.. ++|+.|.++.+.....     ....++|+.|+++++.- ..++ 
T Consensus       211 -------~~--~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l-----~~~~~~L~~L~l~~N~l-~~l~-  273 (454)
T 1jl5_A          211 -------PD--LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTL-----PDLPPSLEALNVRDNYL-TDLP-  273 (454)
T ss_dssp             -------CC--CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSC-----CSCCTTCCEEECCSSCC-SCCC-
T ss_pred             -------CC--CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcc-----cccccccCEEECCCCcc-cccC-
Confidence                   11  12478888888888777774 333 7788888866554433     12346788888876321 2221 


Q ss_pred             chhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccc
Q 009194          276 NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLET  355 (540)
Q Consensus       276 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~  355 (540)
                           ..+++|+.|++.++. ++.+    +  ...++|++|+++++ .++.+.        ...++|+.|++++ ..++.
T Consensus       274 -----~~~~~L~~L~ls~N~-l~~l----~--~~~~~L~~L~l~~N-~l~~i~--------~~~~~L~~L~Ls~-N~l~~  331 (454)
T 1jl5_A          274 -----ELPQSLTFLDVSENI-FSGL----S--ELPPNLYYLNASSN-EIRSLC--------DLPPSLEELNVSN-NKLIE  331 (454)
T ss_dssp             -----CCCTTCCEEECCSSC-CSEE----S--CCCTTCCEEECCSS-CCSEEC--------CCCTTCCEEECCS-SCCSC
T ss_pred             -----cccCcCCEEECcCCc-cCcc----c--CcCCcCCEEECcCC-cCCccc--------CCcCcCCEEECCC-Ccccc
Confidence                 124677777776643 2221    1  12357888888777 344331        1124788888877 34554


Q ss_pred             cccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccccccc
Q 009194          356 ICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM  409 (540)
Q Consensus       356 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  409 (540)
                      ++.       .+++|++|++++| .++.+|.     .+++|+.|+++++ .++.
T Consensus       332 lp~-------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N-~l~~  371 (454)
T 1jl5_A          332 LPA-------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYN-PLRE  371 (454)
T ss_dssp             CCC-------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSS
T ss_pred             ccc-------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCC-CCCc
Confidence            332       2578888888876 5776654     3678888888874 4443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=6.1e-21  Score=186.45  Aligned_cols=291  Identities=14%  Similarity=0.137  Sum_probs=171.4

Q ss_pred             CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEE
Q 009194           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS  136 (540)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~  136 (540)
                      +++.++++++..  ..+|..+   .++|++|++++|.+..+ |..+.++++|++|++++|.++.  +..++++++|++|+
T Consensus        34 ~l~~l~~~~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGL--KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCC--SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCc--cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            567777777765  4555433   36777788877777765 3467777888888888877765  46777788888888


Q ss_pred             ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (540)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (540)
                      +++|.++.+|..+.  ++|++|++++|. +..++...++.+++|+.|++++|.+....      ..+..++.+ +|+.|+
T Consensus       109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l-~L~~L~  178 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSG------FEPGAFDGL-KLNYLR  178 (332)
T ss_dssp             CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGG------SCTTSSCSC-CCSCCB
T ss_pred             CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCC------CCcccccCC-ccCEEE
Confidence            88877777776654  678888887777 56666655677788888888777664111      122344555 777777


Q ss_pred             eecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccC
Q 009194          217 IEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG  296 (540)
Q Consensus       217 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (540)
                      +++|.+..+|..+. ++|+.|.++.+.+..... .....+                           ++|+.|++.+..-
T Consensus       179 l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~-~~l~~l---------------------------~~L~~L~L~~N~l  229 (332)
T 2ft3_A          179 ISEAKLTGIPKDLP-ETLNELHLDHNKIQAIEL-EDLLRY---------------------------SKLYRLGLGHNQI  229 (332)
T ss_dssp             CCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCT-TSSTTC---------------------------TTCSCCBCCSSCC
T ss_pred             CcCCCCCccCcccc-CCCCEEECCCCcCCccCH-HHhcCC---------------------------CCCCEEECCCCcC
Confidence            87777766665422 344444443322211100 001222                           3444444443221


Q ss_pred             cccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCC---CCCCCCCCeE
Q 009194          297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE---DQSFSNLRII  373 (540)
Q Consensus       297 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~~~L~~L  373 (540)
                       .....  ..+..+++|++|+++++ +++.++.     ....+++|+.|++++ +.++.++...+..   ...++.|+.|
T Consensus       230 -~~~~~--~~~~~l~~L~~L~L~~N-~l~~lp~-----~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L  299 (332)
T 2ft3_A          230 -RMIEN--GSLSFLPTLRELHLDNN-KLSRVPA-----GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGI  299 (332)
T ss_dssp             -CCCCT--TGGGGCTTCCEEECCSS-CCCBCCT-----TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred             -CcCCh--hHhhCCCCCCEEECCCC-cCeecCh-----hhhcCccCCEEECCC-CCCCccChhHccccccccccccccce
Confidence             11110  01446777888888777 4554432     345677788888876 3466655443311   1125677888


Q ss_pred             EEeeCCCCc-cccChHHHhhcccccEEEEcccc
Q 009194          374 NVDSCRKLK-YLFSFSMAKNLLRLQKVKVEDCD  405 (540)
Q Consensus       374 ~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~c~  405 (540)
                      .+.+++-.. .+ +...+..+++|+.++++++.
T Consensus       300 ~l~~N~~~~~~~-~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          300 SLFNNPVPYWEV-QPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ECCSSSSCGGGS-CGGGGTTBCCSTTEEC----
T ss_pred             EeecCccccccc-Ccccccccchhhhhhccccc
Confidence            888765331 23 23345667788888887754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=4.7e-21  Score=186.46  Aligned_cols=231  Identities=21%  Similarity=0.269  Sum_probs=149.8

Q ss_pred             cCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECC
Q 009194           83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS  161 (540)
Q Consensus        83 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~  161 (540)
                      ...++++|+++++.+..+|..+.++++|++|++++|.++. |..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            4588999999999999999888889999999999999887 788899999999999999888899889999999999998


Q ss_pred             CCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEe
Q 009194          162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRI  241 (540)
Q Consensus       162 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  241 (540)
                      +|...+.+|.. ++.      ..                 ....++.+++|+.|++++|.+..+|..             
T Consensus       159 ~n~~~~~~p~~-~~~------~~-----------------~~~~~~~l~~L~~L~L~~n~l~~lp~~-------------  201 (328)
T 4fcg_A          159 ACPELTELPEP-LAS------TD-----------------ASGEHQGLVNLQSLRLEWTGIRSLPAS-------------  201 (328)
T ss_dssp             EETTCCCCCSC-SEE------EC------------------CCCEEESTTCCEEEEEEECCCCCCGG-------------
T ss_pred             CCCCccccChh-Hhh------cc-----------------chhhhccCCCCCEEECcCCCcCcchHh-------------
Confidence            87767777664 332      00                 012244556666666666655544443             


Q ss_pred             cCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccc
Q 009194          242 GDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC  321 (540)
Q Consensus       242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  321 (540)
                                 ...+++|++|+++++    .+.                        .....   +..+++|++|++++|
T Consensus       202 -----------l~~l~~L~~L~L~~N----~l~------------------------~l~~~---l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          202 -----------IANLQNLKSLKIRNS----PLS------------------------ALGPA---IHHLPKLEELDLRGC  239 (328)
T ss_dssp             -----------GGGCTTCCEEEEESS----CCC------------------------CCCGG---GGGCTTCCEEECTTC
T ss_pred             -----------hcCCCCCCEEEccCC----CCC------------------------cCchh---hccCCCCCEEECcCC
Confidence                       222333344444331    000                        00000   234555666666655


Q ss_pred             cCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEE
Q 009194          322 SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKV  401 (540)
Q Consensus       322 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l  401 (540)
                      .....++.     ....+++|+.|++++|.....++..    .+.+++|++|++++|+.+..+|.  .+.++++|+.+.+
T Consensus       240 ~~~~~~p~-----~~~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l  308 (328)
T 4fcg_A          240 TALRNYPP-----IFGGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILV  308 (328)
T ss_dssp             TTCCBCCC-----CTTCCCCCCEEECTTCTTCCBCCTT----GGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred             cchhhhHH-----HhcCCCCCCEEECCCCCchhhcchh----hhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence            43333322     3455666666666666655555543    55677777777777777776643  3566777777776


Q ss_pred             cc
Q 009194          402 ED  403 (540)
Q Consensus       402 ~~  403 (540)
                      ..
T Consensus       309 ~~  310 (328)
T 4fcg_A          309 PP  310 (328)
T ss_dssp             CG
T ss_pred             CH
Confidence            54

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=4.1e-20  Score=180.42  Aligned_cols=155  Identities=19%  Similarity=0.223  Sum_probs=106.9

Q ss_pred             CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEE
Q 009194           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS  136 (540)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~  136 (540)
                      +++.++++++..  ..+|..+   .+.+++|++++|.++.++. .++++++|++|++++|.++.  |..++++++|++|+
T Consensus        32 ~l~~l~~~~~~l--~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCc--cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            566777776664  4455422   3577777777777776654 57777888888888777765  46777788888888


Q ss_pred             ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (540)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (540)
                      +++|.++.+|..+.  ++|++|++++|. +..++...++++++|+.|++++|.+....      .....++++++|+.|+
T Consensus       107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~  177 (330)
T 1xku_A          107 LSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSG------IENGAFQGMKKLSYIR  177 (330)
T ss_dssp             CCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGG------BCTTGGGGCTTCCEEE
T ss_pred             CCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccC------cChhhccCCCCcCEEE
Confidence            88877777776554  678888888776 55666655777888888888777654111      1234566777888888


Q ss_pred             eecCCCCCCCcc
Q 009194          217 IEVPDAEILPPD  228 (540)
Q Consensus       217 l~~~~~~~~~~~  228 (540)
                      +++|.+..+|..
T Consensus       178 l~~n~l~~l~~~  189 (330)
T 1xku_A          178 IADTNITTIPQG  189 (330)
T ss_dssp             CCSSCCCSCCSS
T ss_pred             CCCCccccCCcc
Confidence            887777666543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=1.6e-19  Score=176.22  Aligned_cols=173  Identities=16%  Similarity=0.214  Sum_probs=139.1

Q ss_pred             CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcC
Q 009194           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD  116 (540)
Q Consensus        38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~  116 (540)
                      +++.++++++.+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.+..+ |..+.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5789999999888887643 37899999999986  556665578999999999999999876 7789999999999999


Q ss_pred             CCccCC-cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCcccc
Q 009194          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       117 ~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      +|.++. |..+.  ++|++|++++|.+..++.. +.++++|++|++++|.... ......++.+++|+.|++++|.+...
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            999887 55544  7999999999999877654 8999999999999987321 13333488999999999999887621


Q ss_pred             cccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194          194 KVEGGSNASLVELERLTELTTLEIEVPDAEILP  226 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  226 (540)
                               +..+  .++|+.|++++|.+..++
T Consensus       187 ---------~~~~--~~~L~~L~l~~n~l~~~~  208 (330)
T 1xku_A          187 ---------PQGL--PPSLTELHLDGNKITKVD  208 (330)
T ss_dssp             ---------CSSC--CTTCSEEECTTSCCCEEC
T ss_pred             ---------Cccc--cccCCEEECCCCcCCccC
Confidence                     1122  278999999999876553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=2.1e-22  Score=206.38  Aligned_cols=147  Identities=18%  Similarity=0.071  Sum_probs=72.8

Q ss_pred             CCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCC--CCCCCCCCeEEEeeCCCCccccC
Q 009194          309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE--DQSFSNLRIINVDSCRKLKYLFS  386 (540)
Q Consensus       309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~  386 (540)
                      .+++|++|++++| .++.............+++|+.|+++++ .+++.....+..  ....++|++|++++|. ++....
T Consensus       254 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~  330 (461)
T 1z7x_W          254 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC  330 (461)
T ss_dssp             TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred             CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH
Confidence            4567777777766 3433211101112334667777777664 333322111100  1223577777777764 443311


Q ss_pred             ---hHHHhhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCc-cCCCCccEEEEccCCCccccc---
Q 009194          387 ---FSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGI-YCCQNLTKVTVWSCHRLKYLF---  459 (540)
Q Consensus       387 ---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~-~~~~~L~~L~l~~C~~l~~l~---  459 (540)
                         ...+..+++|++|+++++ .+++.+.....                   ..+ ...++|+.|++++| .+++.+   
T Consensus       331 ~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~-------------------~~l~~~~~~L~~L~L~~n-~i~~~~~~~  389 (461)
T 1z7x_W          331 SHFSSVLAQNRFLLELQISNN-RLEDAGVRELC-------------------QGLGQPGSVLRVLWLADC-DVSDSSCSS  389 (461)
T ss_dssp             HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred             HHHHHHHhhCCCccEEEccCC-ccccccHHHHH-------------------HHHcCCCCceEEEECCCC-CCChhhHHH
Confidence               123445677888887776 45443211000                   000 01467777777777 344311   


Q ss_pred             chhhhhhcCCCcEEEEeccc
Q 009194          460 SYSMVNSLGQLQHLEIRNCR  479 (540)
Q Consensus       460 ~~~~~~~l~~L~~L~i~~C~  479 (540)
                      ....+..+++|++|++++|+
T Consensus       390 l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          390 LAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHHhCCCccEEECCCCC
Confidence            12334566777777777763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=4.4e-20  Score=179.60  Aligned_cols=191  Identities=24%  Similarity=0.358  Sum_probs=157.5

Q ss_pred             cCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ..+++.|+++++.+..+|... .+++|++|++++|.+  ..++..+ .++++|++|++++|.+..+|..++++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l--~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGL--MELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCC--CCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCc--cchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence            478999999999998888755 899999999999997  3677554 889999999999999999999999999999999


Q ss_pred             cCCCccC-C-ccccc---------CCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceE
Q 009194          115 LDWCELA-D-IAAIG---------QLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL  183 (540)
Q Consensus       115 l~~~~~~-~-~~~i~---------~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L  183 (540)
                      +++|.+. . |..++         ++++|++|++++|.++.+|..++.+++|++|++++|. +..+|.. ++.+++|+.|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEE
Confidence            9998744 3 55554         4999999999999999999999999999999999998 6678776 8999999999


Q ss_pred             EccCCCcccccccCCCccchhhccCCCCccEEEeecCC-CCCCCccccc-cCccEEEE
Q 009194          184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AEILPPDFVS-VELQRYKI  239 (540)
Q Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~-~~L~~L~l  239 (540)
                      ++++|.+..        ..+..++.+++|+.|++++|. .+.+|..+.. ++|+.|.+
T Consensus       235 ~Ls~n~~~~--------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          235 DLRGCTALR--------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             ECTTCTTCC--------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             ECcCCcchh--------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence            999987652        234567889999999999987 4555554333 44444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=1.2e-19  Score=173.29  Aligned_cols=181  Identities=23%  Similarity=0.306  Sum_probs=104.8

Q ss_pred             hcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCC-CCCC-CcccccCCCC
Q 009194           35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSL-PSSLGRLINL  110 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-~~~l~~l~~L  110 (540)
                      +++++++++++++.+..++.  +..+++|++|++++|.+  ..+....|.++++|++|++++|. +..+ |..+..+++|
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L  107 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence            45566666666666655443  23566666666666654  33333334566666666666665 5544 4455666666


Q ss_pred             cEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccC
Q 009194          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (540)
Q Consensus       111 ~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (540)
                      ++|++++|.++.  +..+.++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...+..+++|+.|++++
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCC
Confidence            666666666554  35566666666666666666655543 5566666666666665 4455544456666666666666


Q ss_pred             CCcccccccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194          188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP  226 (540)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  226 (540)
                      |.+..        ..+..+..+++|+.|++++|.+..++
T Consensus       187 n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          187 NRVAH--------VHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             SCCCE--------ECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             Ccccc--------cCHhHccCcccccEeeCCCCcCCcCC
Confidence            65541        11334555666666666666655444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=5.6e-20  Score=177.77  Aligned_cols=246  Identities=13%  Similarity=0.119  Sum_probs=151.1

Q ss_pred             CCCeEEEccCCCCC---CCCCcC-CCCCccEEEccc-CCCCCccccHHHHhcCccCcEEEcCCCCCC-CCCcccccCCCC
Q 009194           37 KDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINL  110 (540)
Q Consensus        37 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~l~~l~~L  110 (540)
                      .++++++++++.+.   .+|... ++++|++|++++ |.+ ...++.. +.++++|++|++++|.+. .+|..+.++++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l-~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc-cccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            46777777777774   355433 677777777774 554 3344444 367777777777777775 566667777777


Q ss_pred             cEEEcCCCccCC--cccccCCCCCCEEEecCCCCc-ccchhcCCCC-CCCEEECCCCccccccchhhhhcCCccceEEcc
Q 009194          111 QTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLT-RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (540)
Q Consensus       111 ~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (540)
                      ++|++++|.++.  |..+.++++|++|++++|.++ .+|..+..++ +|++|++++|.....+|.. ++.+. |+.|+++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLS  205 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECc
Confidence            777777777663  566777777777777777766 6676777776 7777777777644455554 56665 7777777


Q ss_pred             CCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      +|.+..        ..+..+.++++|+.|++++|.+...+..                        ...+++|++|++++
T Consensus       206 ~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          206 RNMLEG--------DASVLFGSDKNTQKIHLAKNSLAFDLGK------------------------VGLSKNLNGLDLRN  253 (313)
T ss_dssp             SSEEEE--------CCGGGCCTTSCCSEEECCSSEECCBGGG------------------------CCCCTTCCEEECCS
T ss_pred             CCcccC--------cCCHHHhcCCCCCEEECCCCceeeecCc------------------------ccccCCCCEEECcC
Confidence            765541        1234456667777777776654322211                        11234444444444


Q ss_pred             cccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCce-eeeccccccccccCccccee
Q 009194          267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL-HIVGSVRRVRCEVFPLLEAL  345 (540)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L  345 (540)
                                                 ..-.......   +..+++|++|+++++. ++ .++      ....+++|+.+
T Consensus       254 ---------------------------N~l~~~~p~~---l~~l~~L~~L~Ls~N~-l~~~ip------~~~~l~~L~~l  296 (313)
T 1ogq_A          254 ---------------------------NRIYGTLPQG---LTQLKFLHSLNVSFNN-LCGEIP------QGGNLQRFDVS  296 (313)
T ss_dssp             ---------------------------SCCEECCCGG---GGGCTTCCEEECCSSE-EEEECC------CSTTGGGSCGG
T ss_pred             ---------------------------CcccCcCChH---HhcCcCCCEEECcCCc-ccccCC------CCccccccChH
Confidence                                       2211111111   4467788888888873 43 222      33677888888


Q ss_pred             cccccccccc
Q 009194          346 SLMFLTNLET  355 (540)
Q Consensus       346 ~l~~c~~l~~  355 (540)
                      ++.+.+.+..
T Consensus       297 ~l~~N~~lc~  306 (313)
T 1ogq_A          297 AYANNKCLCG  306 (313)
T ss_dssp             GTCSSSEEES
T ss_pred             HhcCCCCccC
Confidence            8888765544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=1.4e-19  Score=178.34  Aligned_cols=176  Identities=19%  Similarity=0.189  Sum_probs=120.2

Q ss_pred             EEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCc
Q 009194           41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCE  119 (540)
Q Consensus        41 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~  119 (540)
                      ..+.+++.++.+|... .++|++|++++|.+  ..++...+.++++|++|++++|.+..+ |..+.++++|++|++++|.
T Consensus        35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRI--TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EEECCSTTCSSCCTTC-CTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeeCCCCCcccccccc-cccCcEEECCCCcC--cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            3677777777777632 24778888888775  455554567778888888888777764 4457777788888888887


Q ss_pred             cCC-c-ccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          120 LAD-I-AAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       120 ~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      ++. + ..++++++|++|++++|.++.+|.  .+..+++|++|++++|..+..++...++.+++|++|++++|.+..   
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---  188 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS---  188 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---
Confidence            776 4 347777888888888877777776  467777888888777744556654446777777777777776541   


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (540)
                           ..+..++++++|++|++++|....++.
T Consensus       189 -----~~~~~l~~l~~L~~L~l~~n~l~~~~~  215 (353)
T 2z80_A          189 -----YEPKSLKSIQNVSHLILHMKQHILLLE  215 (353)
T ss_dssp             -----ECTTTTTTCSEEEEEEEECSCSTTHHH
T ss_pred             -----cCHHHHhccccCCeecCCCCccccchh
Confidence                 123456666777777777766554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=4e-19  Score=173.51  Aligned_cols=290  Identities=13%  Similarity=0.108  Sum_probs=196.1

Q ss_pred             CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcC
Q 009194           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLD  116 (540)
Q Consensus        38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~  116 (540)
                      .++.++++++.+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.+..+ |..+.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5889999999888888754 47899999999986  555555568999999999999999875 6788999999999999


Q ss_pred             CCccCC-cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcccc-ccchhhhhcCCccceEEccCCCcccc
Q 009194          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLE-VIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       117 ~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      +|.++. |..+.  ++|++|++++|.+..+|.. +..+++|++|++++|.... ......++.+ +|+.|++++|.+.. 
T Consensus       111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-  186 (332)
T ss_dssp             SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred             CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence            999887 55554  7999999999999888765 8899999999999987321 1333335666 89999999987762 


Q ss_pred             cccCCCccchhhccCCCCccEEEeecCCCCCCCcc-ccc-cCccEEEEEecCCCCCCCCccccccccccEEEEecccccc
Q 009194          194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPD-FVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVS  271 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  271 (540)
                              .+..+  .++|+.|++++|.+..++.. +.. ++|+.|.++.+.+..... .....+++|+.|++++     
T Consensus       187 --------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~-----  250 (332)
T 2ft3_A          187 --------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDN-----  250 (332)
T ss_dssp             --------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCS-----
T ss_pred             --------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCC-----
Confidence                    12222  26899999999998777643 333 788888886654433211 0133445555555554     


Q ss_pred             ccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeecccccc--ccccCcccceecccc
Q 009194          272 ILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRV--RCEVFPLLEALSLMF  349 (540)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~~L~~L~l~~  349 (540)
                                            .. ++.+...   +..+++|+.|+++++ .++.++......  ....++.|+.|++.+
T Consensus       251 ----------------------N~-l~~lp~~---l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          251 ----------------------NK-LSRVPAG---LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             ----------------------SC-CCBCCTT---GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred             ----------------------Cc-CeecChh---hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeec
Confidence                                  21 1111111   446778888888877 455553221110  112357788888887


Q ss_pred             cccccccccccCCCCCCCCCCCeEEEeeCC
Q 009194          350 LTNLETICYSQLREDQSFSNLRIINVDSCR  379 (540)
Q Consensus       350 c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~  379 (540)
                      .+ +..+...... +..+++|+.+.++++.
T Consensus       304 N~-~~~~~~~~~~-~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          304 NP-VPYWEVQPAT-FRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SS-SCGGGSCGGG-GTTBCCSTTEEC----
T ss_pred             Cc-ccccccCccc-ccccchhhhhhccccc
Confidence            65 3322211111 5668888888888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=2e-19  Score=173.93  Aligned_cols=249  Identities=14%  Similarity=0.141  Sum_probs=178.0

Q ss_pred             CCccEEEcccCCCCCc--cccHHHHhcCccCcEEEcCC-CCCC-CCCcccccCCCCcEEEcCCCccCC--cccccCCCCC
Q 009194           59 PNLQLFLLYTEGNGPM--QVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKL  132 (540)
Q Consensus        59 ~~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L  132 (540)
                      .+++.|+++++.+ ..  .++.. +.++++|++|++++ +.+. .+|..++++++|++|++++|.++.  |..+.++++|
T Consensus        50 ~~l~~L~L~~~~l-~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNL-PKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCC-SSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCc-cCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            5788899998887 44  55554 47889999999985 7665 578888889999999999888874  6788889999


Q ss_pred             CEEEecCCCCc-ccchhcCCCCCCCEEECCCCccccccchhhhhcCC-ccceEEccCCCcccccccCCCccchhhccCCC
Q 009194          133 EILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSGWEKVEGGSNASLVELERLT  210 (540)
Q Consensus       133 ~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~  210 (540)
                      ++|++++|.+. .+|..+..+++|++|++++|...+.+|.. ++.++ +|+.|++++|.+..        ..+..+..++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~--------~~~~~~~~l~  198 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG--------KIPPTFANLN  198 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE--------ECCGGGGGCC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec--------cCChHHhCCc
Confidence            99999988887 67888888999999999888855577766 77777 88888888887651        2234555565


Q ss_pred             CccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceee
Q 009194          211 ELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLW  290 (540)
Q Consensus       211 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  290 (540)
                       |+.|++++|.+.......                       ...+++|+.|++++    ..+.                
T Consensus       199 -L~~L~Ls~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~----N~l~----------------  234 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASVL-----------------------FGSDKNTQKIHLAK----NSLA----------------  234 (313)
T ss_dssp             -CSEEECCSSEEEECCGGG-----------------------CCTTSCCSEEECCS----SEEC----------------
T ss_pred             -ccEEECcCCcccCcCCHH-----------------------HhcCCCCCEEECCC----Ccee----------------
Confidence             888888877654322210                       23445566666555    1111                


Q ss_pred             eccccCcccccccCccCCCCccccEEeeccccCce-eeeccccccccccCcccceeccccccccc-ccccccCCCCCCCC
Q 009194          291 LETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEIL-HIVGSVRRVRCEVFPLLEALSLMFLTNLE-TICYSQLREDQSFS  368 (540)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~  368 (540)
                             ..    .+.+..+++|++|+++++. ++ .++.     ....+++|+.|+++++. ++ .++.     .+.++
T Consensus       235 -------~~----~~~~~~l~~L~~L~Ls~N~-l~~~~p~-----~l~~l~~L~~L~Ls~N~-l~~~ip~-----~~~l~  291 (313)
T 1ogq_A          235 -------FD----LGKVGLSKNLNGLDLRNNR-IYGTLPQ-----GLTQLKFLHSLNVSFNN-LCGEIPQ-----GGNLQ  291 (313)
T ss_dssp             -------CB----GGGCCCCTTCCEEECCSSC-CEECCCG-----GGGGCTTCCEEECCSSE-EEEECCC-----STTGG
T ss_pred             -------ee----cCcccccCCCCEEECcCCc-ccCcCCh-----HHhcCcCCCEEECcCCc-ccccCCC-----Ccccc
Confidence                   01    1113467899999999984 44 2222     56788999999999864 44 3333     56789


Q ss_pred             CCCeEEEeeCCCCcccc
Q 009194          369 NLRIINVDSCRKLKYLF  385 (540)
Q Consensus       369 ~L~~L~l~~c~~l~~~~  385 (540)
                      +|+.+.+.+++.+...|
T Consensus       292 ~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          292 RFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             GSCGGGTCSSSEEESTT
T ss_pred             ccChHHhcCCCCccCCC
Confidence            99999999988776543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=1.6e-18  Score=176.09  Aligned_cols=172  Identities=22%  Similarity=0.253  Sum_probs=101.0

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~  117 (540)
                      .++++..+..+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus        45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            345666666666665532 24666666666664  3344344566666666666666666543 4556666666666666


Q ss_pred             CccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      |.++. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|..+..++...+..+++|+.|++++|.+.   
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---  198 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---  198 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence            66665 3 456666666666666666665554 35666666666666655455555544566666666666666554   


Q ss_pred             ccCCCccchhhccCCCCccEEEeecCCCC
Q 009194          195 VEGGSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                             .++.+..+++|+.|++++|.+.
T Consensus       199 -------~~~~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          199 -------EIPNLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             -------SCCCCTTCSSCCEEECTTSCCC
T ss_pred             -------cccccCCCcccCEEECCCCccC
Confidence                   1123455556666666655544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=8.7e-19  Score=169.11  Aligned_cols=232  Identities=17%  Similarity=0.135  Sum_probs=177.6

Q ss_pred             chhhhhhhhhhcCCCeEEEccCCCCCCCCCc--CCCCCccEEEcccCCCCCcc-ccHHHHhcCccCcEEEcCCCCCCCCC
Q 009194           25 ADLEKKMEETIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQ-VSDHFFEGMEGLKVLQFPGIGSSSLP  101 (540)
Q Consensus        25 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~l~  101 (540)
                      .+++.+|. .+++++++|+++++.+..++..  .++++|++|++++|.+.... .+.. +..+++|++|++++|.+..+|
T Consensus        17 ~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~   94 (306)
T 2z66_A           17 KGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMS   94 (306)
T ss_dssp             SCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEE
T ss_pred             CCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccCh
Confidence            34555554 4567899999999999888763  48999999999999861111 1344 467999999999999998888


Q ss_pred             cccccCCCCcEEEcCCCccCC-c--ccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEECCCCcccc-ccchhhhhc
Q 009194          102 SSLGRLINLQTLCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLE-VIAPNVISK  176 (540)
Q Consensus       102 ~~l~~l~~L~~L~l~~~~~~~-~--~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~  176 (540)
                      ..+..+++|++|++++|.++. +  ..+..+++|++|++++|.+.. .|..+..+++|++|++++|...+ ..|.. ++.
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~  173 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTE  173 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTT
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-Hhh
Confidence            889999999999999999876 3  578899999999999998874 44558899999999999998443 24544 889


Q ss_pred             CCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCcccc
Q 009194          177 LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLV  254 (540)
Q Consensus       177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~  254 (540)
                      +++|+.|++++|.+..        ..+..+..+++|+.|++++|.+..++.....  ++|+.|.++.+.+....... ..
T Consensus       174 l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~  244 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQ--------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQ  244 (306)
T ss_dssp             CTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS-CC
T ss_pred             CcCCCEEECCCCCcCC--------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH-HH
Confidence            9999999999998762        1245678889999999999998777664333  78888888766544332222 23


Q ss_pred             cc-ccccEEEEeccc
Q 009194          255 KS-EASRLMMLKGIK  268 (540)
Q Consensus       255 ~~-~~L~~L~l~~~~  268 (540)
                      .+ ++|+.|++++.+
T Consensus       245 ~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          245 HFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCCTTCCEEECTTCC
T ss_pred             hhhccCCEEEccCCC
Confidence            33 478888887743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=3.2e-21  Score=197.56  Aligned_cols=362  Identities=17%  Similarity=0.073  Sum_probs=177.1

Q ss_pred             CCCeEEEccCCCCCCCC--C-cCCCCCccEEEcccCCCCCcc---ccHHHHhcCccCcEEEcCCCCCCC-CCcc-cccCC
Q 009194           37 KDPIAISLPHRDIQELP--E-RLQCPNLQLFLLYTEGNGPMQ---VSDHFFEGMEGLKVLQFPGIGSSS-LPSS-LGRLI  108 (540)
Q Consensus        37 ~~l~~l~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~-l~~~-l~~l~  108 (540)
                      +++++++++++.+...+  . +..+++|++|++++|.+ ...   .....+..+++|++|++++|.+.. .+.. ...++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCC-CHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            34566666666653221  1 22556666666666664 211   112334556666666666666543 1111 12233


Q ss_pred             ----CCcEEEcCCCccCC------cccccCCCCCCEEEecCCCCcc-----cchh-cCCCCCCCEEECCCCccccc----
Q 009194          109 ----NLQTLCLDWCELAD------IAAIGQLKKLEILSLAYSNINQ-----LPVE-IGQLTRLQLLDLSNCWWLEV----  168 (540)
Q Consensus       109 ----~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~~~~-----lp~~-~~~l~~L~~L~l~~~~~~~~----  168 (540)
                          +|++|++++|.++.      +..+.++++|++|++++|.+..     +... ....++|++|++++|.....    
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                46666666666552      3555666666666666665542     1111 12244566666666652221    


Q ss_pred             cchhhhhcCCccceEEccCCCcccccccCCCccchhhcc-CCCCccEEEeecCCCCCC-----Cccccc-cCccEEEEEe
Q 009194          169 IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTLEIEVPDAEIL-----PPDFVS-VELQRYKIRI  241 (540)
Q Consensus       169 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-----~~~~~~-~~L~~L~l~~  241 (540)
                      ++.. ++.+++|++|++++|.+.....    ......+. ..++|++|++++|.+...     +..+.. ++|+.|.++.
T Consensus       162 l~~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  236 (461)
T 1z7x_W          162 LASV-LRAKPDFKELTVSNNDINEAGV----RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS  236 (461)
T ss_dssp             HHHH-HHHCTTCCEEECCSSBCHHHHH----HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHH-HhhCCCCCEEECcCCCcchHHH----HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence            1222 4455666666666665431100    00111111 244666666666654432     222222 5666666654


Q ss_pred             cCCCCCCC----CccccccccccEEEEecccccccccc--chhhhhhhcccceeeeccccCcccccccCc--cCCCCccc
Q 009194          242 GDGPEDEF----DPLLVKSEASRLMMLKGIKKVSILQE--NDGTKMLLQRTEDLWLETLEGVQSVVHELD--DGEGFPRL  313 (540)
Q Consensus       242 ~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~~L  313 (540)
                      +.+.....    .......++|++|+++++. .+....  .......+++|+.|++.+..-.......+.  .....++|
T Consensus       237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L  315 (461)
T 1z7x_W          237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  315 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             CcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc
Confidence            33211100    0001135678888887732 111100  011112257788888876542111111110  01234688


Q ss_pred             cEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCC--CCCCCCCCeEEEeeCCCCcccc---ChH
Q 009194          314 KRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE--DQSFSNLRIINVDSCRKLKYLF---SFS  388 (540)
Q Consensus       314 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~---~~~  388 (540)
                      ++|++++|. ++.............+++|+.|+++++ .+++.....+..  ....++|++|++++| .+++..   ...
T Consensus       316 ~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~  392 (461)
T 1z7x_W          316 ESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAA  392 (461)
T ss_dssp             CEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH
T ss_pred             eeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHH
Confidence            888888884 332211111113345688888888876 455443221100  112578899999887 465310   122


Q ss_pred             HHhhcccccEEEEcccccccc
Q 009194          389 MAKNLLRLQKVKVEDCDDLKM  409 (540)
Q Consensus       389 ~~~~l~~L~~L~l~~c~~l~~  409 (540)
                      .+..+++|++|++++|+ +++
T Consensus       393 ~l~~~~~L~~L~l~~N~-i~~  412 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNC-LGD  412 (461)
T ss_dssp             HHHHCCCCCEEECCSSS-CCH
T ss_pred             HHHhCCCccEEECCCCC-CCH
Confidence            35668889999998864 443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=4.6e-19  Score=174.64  Aligned_cols=191  Identities=18%  Similarity=0.219  Sum_probs=155.3

Q ss_pred             cchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC
Q 009194           24 VADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP  101 (540)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  101 (540)
                      +..++++|. .+.+++++|++++|.+..++.  +.++++|++|++++|.+  ..++...|.++++|++|++++|.+..+|
T Consensus        40 ~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           40 SGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             STTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred             CCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence            334556565 456799999999999987776  44899999999999986  5565555789999999999999999988


Q ss_pred             cc-cccCCCCcEEEcCCCccCC-cc--cccCCCCCCEEEecCC-CCcccc-hhcCCCCCCCEEECCCCccccccchhhhh
Q 009194          102 SS-LGRLINLQTLCLDWCELAD-IA--AIGQLKKLEILSLAYS-NINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVIS  175 (540)
Q Consensus       102 ~~-l~~l~~L~~L~l~~~~~~~-~~--~i~~l~~L~~L~l~~~-~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  175 (540)
                      .. ++++++|++|++++|.++. +.  .+.++++|++|++++| .+..++ ..+..+++|++|++++|. +...+...++
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~  195 (353)
T 2z80_A          117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLK  195 (353)
T ss_dssp             HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTT
T ss_pred             HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHh
Confidence            75 7899999999999999887 44  7899999999999999 577664 568999999999999998 4555434489


Q ss_pred             cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194          176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILP  226 (540)
Q Consensus       176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  226 (540)
                      .+++|++|++++|.+...        ....+..+++|+.|++++|.+..++
T Consensus       196 ~l~~L~~L~l~~n~l~~~--------~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          196 SIQNVSHLILHMKQHILL--------LEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             TCSEEEEEEEECSCSTTH--------HHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             ccccCCeecCCCCccccc--------hhhhhhhcccccEEECCCCcccccc
Confidence            999999999999876511        1122456889999999999876554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.79  E-value=1.3e-18  Score=167.83  Aligned_cols=176  Identities=22%  Similarity=0.186  Sum_probs=144.3

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC---CcccccCCCCcEEEcC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLD  116 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~l~~l~~L~~L~l~  116 (540)
                      ++++.+++.+..+|... .+++++|++++|.+  ..++.++|.++++|++|++++|.+..+   +..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l--~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCC-CCCCCEEECCCCcc--CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            46888888888888743 36899999999987  577777788999999999999998754   5667789999999999


Q ss_pred             CCccCC-cccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       117 ~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      +|.+.. +..+..+++|++|++++|.++.++.  .+..+++|++|++++|. +...+...++.+++|++|++++|.+.. 
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-  164 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-  164 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG-
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc-
Confidence            999887 7779999999999999998887764  68899999999999988 444444448889999999999987651 


Q ss_pred             cccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194          194 KVEGGSNASLVELERLTELTTLEIEVPDAEILP  226 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  226 (540)
                            ...+..+..+++|+.|++++|.+..++
T Consensus       165 ------~~~~~~~~~l~~L~~L~Ls~n~l~~~~  191 (306)
T 2z66_A          165 ------NFLPDIFTELRNLTFLDLSQCQLEQLS  191 (306)
T ss_dssp             ------GEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred             ------ccchhHHhhCcCCCEEECCCCCcCCcC
Confidence                  123456788899999999999876553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=4.6e-18  Score=172.69  Aligned_cols=231  Identities=16%  Similarity=0.179  Sum_probs=185.7

Q ss_pred             CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194           23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL  100 (540)
Q Consensus        23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  100 (540)
                      .+..++.+|. .++++++.+++++|.+..++.  +.++++|++|++++|.+  ..++...|.++++|++|++++|.+..+
T Consensus        51 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~~  127 (440)
T 3zyj_A           51 VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFDNRLTTI  127 (440)
T ss_dssp             CSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC--CEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred             CCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC--CccChhhccCCccCCEEECCCCcCCee
Confidence            3445556664 567899999999999977653  44899999999999987  566666689999999999999999988


Q ss_pred             Cc-ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCC-CCcccch-hcCCCCCCCEEECCCCccccccchhhhh
Q 009194          101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVIS  175 (540)
Q Consensus       101 ~~-~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~  175 (540)
                      |. .+..+++|++|++++|.++. + ..+.++++|++|++++| .+..++. .+.++++|++|++++|. +..+|.  +.
T Consensus       128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~  204 (440)
T 3zyj_A          128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LT  204 (440)
T ss_dssp             CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CT
T ss_pred             CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cC
Confidence            75 68999999999999999987 4 68999999999999996 6777766 48899999999999998 778886  89


Q ss_pred             cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccc
Q 009194          176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLL  253 (540)
Q Consensus       176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~  253 (540)
                      .+++|+.|++++|.+..        ..+..+..+++|+.|++++|.+..++.....  ++|+.|+++.+.+..... ...
T Consensus       205 ~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~  275 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSA--------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-DLF  275 (440)
T ss_dssp             TCSSCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-TTT
T ss_pred             CCcccCEEECCCCccCc--------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-hHh
Confidence            99999999999998762        2245688899999999999998777655433  788888886655443321 113


Q ss_pred             cccccccEEEEeccc
Q 009194          254 VKSEASRLMMLKGIK  268 (540)
Q Consensus       254 ~~~~~L~~L~l~~~~  268 (540)
                      ..+++|+.|++++.+
T Consensus       276 ~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          276 TPLHHLERIHLHHNP  290 (440)
T ss_dssp             SSCTTCCEEECCSSC
T ss_pred             ccccCCCEEEcCCCC
Confidence            456778888887744

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=2.3e-17  Score=172.81  Aligned_cols=261  Identities=18%  Similarity=0.113  Sum_probs=193.2

Q ss_pred             hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ...+++.++++++.+..+|.... ++|+.|++++|.+  ..++.    .+++|++|++++|.++.+|.   .+++|++|+
T Consensus        38 ~~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l--~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~  107 (622)
T 3g06_A           38 LNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELS  107 (622)
T ss_dssp             HHHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCC--SCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred             cCCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCC--CCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence            34579999999999998887544 8999999999986  55664    68999999999999998887   789999999


Q ss_pred             cCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194          115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       115 l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      +++|.++. |.   .+.+|+.|++++|.++.+|..   +++|++|++++|. +..+|.    .+.+|+.|++++|.+.. 
T Consensus       108 Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~-  175 (622)
T 3g06_A          108 IFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS-  175 (622)
T ss_dssp             ECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-
T ss_pred             CcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC-
Confidence            99999888 44   678999999999999988874   5899999999987 666664    35789999999987761 


Q ss_pred             cccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEecccccccc
Q 009194          194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSIL  273 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  273 (540)
                              . .  ..+++|+.|++++|.+..++..  .++|+.|.+..+.+...     ..                   
T Consensus       176 --------l-~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l-----~~-------------------  218 (622)
T 3g06_A          176 --------L-P--MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSL-----PA-------------------  218 (622)
T ss_dssp             --------C-C--CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSC-----CC-------------------
T ss_pred             --------C-c--ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCccccc-----CC-------------------
Confidence                    1 1  4568899999999988776643  24555555543333222     11                   


Q ss_pred             ccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccc
Q 009194          274 QENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNL  353 (540)
Q Consensus       274 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  353 (540)
                              .+++|+.|++.++. ++.+      ...+++|+.|+++++ +++.++       . .+++|+.|+++++ .+
T Consensus       219 --------~~~~L~~L~Ls~N~-L~~l------p~~l~~L~~L~Ls~N-~L~~lp-------~-~~~~L~~L~Ls~N-~L  273 (622)
T 3g06_A          219 --------LPSGLKELIVSGNR-LTSL------PVLPSELKELMVSGN-RLTSLP-------M-LPSGLLSLSVYRN-QL  273 (622)
T ss_dssp             --------CCTTCCEEECCSSC-CSCC------CCCCTTCCEEECCSS-CCSCCC-------C-CCTTCCEEECCSS-CC
T ss_pred             --------CCCCCCEEEccCCc-cCcC------CCCCCcCcEEECCCC-CCCcCC-------c-ccccCcEEeCCCC-CC
Confidence                    12455555555432 2221      135678999999887 566552       2 5788999999885 67


Q ss_pred             cccccccCCCCCCCCCCCeEEEeeCCCCccc
Q 009194          354 ETICYSQLREDQSFSNLRIINVDSCRKLKYL  384 (540)
Q Consensus       354 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~  384 (540)
                      +.++..    +..+++|+.|++++++ ++..
T Consensus       274 ~~lp~~----l~~l~~L~~L~L~~N~-l~~~  299 (622)
T 3g06_A          274 TRLPES----LIHLSSETTVNLEGNP-LSER  299 (622)
T ss_dssp             CSCCGG----GGGSCTTCEEECCSCC-CCHH
T ss_pred             CcCCHH----HhhccccCEEEecCCC-CCCc
Confidence            766543    6678999999999975 4443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=4.4e-18  Score=173.48  Aligned_cols=176  Identities=23%  Similarity=0.236  Sum_probs=115.9

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~  117 (540)
                      .+.++..+..+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus        56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CcEEEECCCCcCccCCCC-CCCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            456666666666666532 25677777777765  4444444567777777777777776543 5566777777777777


Q ss_pred             CccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      |.++. + ..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+..+++|+.|++++|.+.   
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---  209 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---  209 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred             CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence            77665 3 456677777777777777776655 36677777777777765566666655677777777777777654   


Q ss_pred             ccCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (540)
                             .+..+..+++|+.|++++|.+..++.
T Consensus       210 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          210 -------DMPNLTPLVGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             -------SCCCCTTCTTCCEEECTTSCCSEECG
T ss_pred             -------ccccccccccccEEECcCCcCcccCc
Confidence                   12345666777777777777655533

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=5.4e-18  Score=172.82  Aligned_cols=231  Identities=17%  Similarity=0.164  Sum_probs=185.0

Q ss_pred             CcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC
Q 009194           23 NVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL  100 (540)
Q Consensus        23 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l  100 (540)
                      .+..++.+|. .+++++++|++++|.+..++.  +.++++|+.|++++|.+  ..++...|.++++|++|++++|.+..+
T Consensus        62 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~  138 (452)
T 3zyi_A           62 TRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVI  138 (452)
T ss_dssp             CSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred             CCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc--CCcChhhccCcccCCEEECCCCcCCcc
Confidence            3445556564 467899999999999977643  44899999999999987  556656678999999999999999987


Q ss_pred             Cc-ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCC-CCcccchh-cCCCCCCCEEECCCCccccccchhhhh
Q 009194          101 PS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYS-NINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVIS  175 (540)
Q Consensus       101 ~~-~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~-~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~  175 (540)
                      |. .+..+++|++|++++|.++. + ..+.++++|++|++++| .+..++.. +..+++|++|++++|. +..+|.  +.
T Consensus       139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~  215 (452)
T 3zyi_A          139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LT  215 (452)
T ss_dssp             CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CT
T ss_pred             ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--cc
Confidence            75 47899999999999999987 4 68999999999999995 77777764 8899999999999998 777775  88


Q ss_pred             cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc--cCccEEEEEecCCCCCCCCccc
Q 009194          176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLL  253 (540)
Q Consensus       176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~  253 (540)
                      .+++|+.|++++|.+..        ..+..+.++++|+.|++++|.+..++.....  ++|+.|+++.+.+..... ...
T Consensus       216 ~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~  286 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPE--------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-DLF  286 (452)
T ss_dssp             TCTTCCEEECTTSCCSE--------ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSS
T ss_pred             ccccccEEECcCCcCcc--------cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-HHh
Confidence            99999999999998762        2245688999999999999998766554333  788888887665443321 113


Q ss_pred             cccccccEEEEeccc
Q 009194          254 VKSEASRLMMLKGIK  268 (540)
Q Consensus       254 ~~~~~L~~L~l~~~~  268 (540)
                      ..+++|+.|++++.+
T Consensus       287 ~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          287 TPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             ccccCCCEEEccCCC
Confidence            456788888887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=6.6e-18  Score=161.10  Aligned_cols=193  Identities=19%  Similarity=0.209  Sum_probs=155.4

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~  117 (540)
                      -+.++.+++.+..+|.. ..+++++|++++|.+  ..++...|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus        13 ~~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVG-IPAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCSSCCTT-CCTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcccCCcC-CCCCceEEEeeCCcC--CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            47888888888888763 357999999999997  566666678999999999999999875 67889999999999999


Q ss_pred             Cc-cCC--cccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194          118 CE-LAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       118 ~~-~~~--~~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      |. +..  +..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++...++.+++|+.|++++|.+...
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc
Confidence            97 776  57899999999999999998876 4558899999999999998 6777766688999999999999977611


Q ss_pred             cccCCCccchhhccCCCCccEEEeecCCCCCC-Cccccc-cCccEEEEEecC
Q 009194          194 KVEGGSNASLVELERLTELTTLEIEVPDAEIL-PPDFVS-VELQRYKIRIGD  243 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~-~~L~~L~l~~~~  243 (540)
                              ....+..+++|+.|++++|.+..+ +..+.. ++|+.|.++.+.
T Consensus       169 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          169 --------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             --------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             --------CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence                    123477889999999999987655 333322 555555554433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=2.2e-17  Score=157.52  Aligned_cols=191  Identities=21%  Similarity=0.221  Sum_probs=157.7

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      .+++++++++++.+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.+..++.. +.+++|++|++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L   84 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL   84 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred             cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcC--CccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence            456899999999998888644 37899999999997  556556678999999999999999887654 78999999999


Q ss_pred             CCCccCC-cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194          116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       116 ~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      ++|.++. |..+..+++|++|++++|.++.+|. .+..+++|++|++++|. +..++...+..+++|+.|++++|.+...
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCcc
Confidence            9999988 7888999999999999999998874 48999999999999998 7788877678999999999999987621


Q ss_pred             cccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEE
Q 009194          194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKI  239 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l  239 (540)
                      .        ...+.++++|+.|++++|.+..+|..+.. .+|+.+.+
T Consensus       164 ~--------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L  202 (290)
T 1p9a_G          164 P--------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL  202 (290)
T ss_dssp             C--------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred             C--------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence            1        13457889999999999998888876433 44444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=3.6e-17  Score=157.59  Aligned_cols=187  Identities=17%  Similarity=0.247  Sum_probs=151.2

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      .+++++++++++.+..++....+++|+.|++++|.+  ..++.  +.++++|++|++++|.+..++ .+..+++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcC--CCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence            567999999999888888777899999999999986  45554  688999999999999988876 5788999999999


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      ++|.++....+..+++|++|++++|.++.++. +..+++|++|++++|. +..++.  +..+++|+.|++++|.+..   
T Consensus       115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---  187 (308)
T 1h6u_A          115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISD---  187 (308)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCC---
T ss_pred             CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCc---
Confidence            99998885558899999999999998888776 8889999999999987 666665  7889999999999887751   


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEec
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG  242 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~  242 (540)
                             ...+..+++|+.|++++|.+..++. +.. ++|+.|.++.+
T Consensus       188 -------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          188 -------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             -------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE
T ss_pred             -------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC
Confidence                   2237788899999999998776663 222 55666655443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=2.9e-17  Score=155.20  Aligned_cols=180  Identities=22%  Similarity=0.313  Sum_probs=147.5

Q ss_pred             CCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc-cccCCCCcEEEc
Q 009194           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS-LGRLINLQTLCL  115 (540)
Q Consensus        37 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l  115 (540)
                      ...+.++++++.+..+|... .++++.|++++|.+  ..++...|.++++|++|++++|.+..+|.. +.++++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCccCCCC-CCCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            35778999999988888643 26899999999986  556655578899999999999999888764 478999999999


Q ss_pred             CCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccc
Q 009194          116 DWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGW  192 (540)
Q Consensus       116 ~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  192 (540)
                      ++|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+..
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE
Confidence            9999887 4 6778999999999999998877655 7899999999999988 777777767889999999999987762


Q ss_pred             ccccCCCccchhhccCCCCccEEEeecCCCCCCCcc
Q 009194          193 EKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD  228 (540)
Q Consensus       193 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  228 (540)
                      .        ....+.++++|+.|++++|.+..++..
T Consensus       172 ~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (270)
T 2o6q_A          172 V--------PEGAFDKLTELKTLKLDNNQLKRVPEG  199 (270)
T ss_dssp             C--------CTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             e--------ChhHhccCCCcCEEECCCCcCCcCCHH
Confidence            1        123477889999999999988777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.75  E-value=4.5e-17  Score=170.57  Aligned_cols=257  Identities=19%  Similarity=0.104  Sum_probs=173.0

Q ss_pred             CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEec
Q 009194           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLA  138 (540)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~  138 (540)
                      +++.|+++++.+  ..+|..+   .++|++|++++|.+..+|.   .+++|++|++++|.++. |.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L--~~lp~~l---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGL--TTLPDCL---PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCC--SCCCSCC---CTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCc--CccChhh---CCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence            577788887776  4666543   2678888888888777776   56778888888887776 44   66778888888


Q ss_pred             CCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEee
Q 009194          139 YSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIE  218 (540)
Q Consensus       139 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  218 (540)
                      +|.++.+|.   .+++|++|++++|. +..+|..    +++|++|++++|.+..         .+   ...++|+.|++.
T Consensus       110 ~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~---------l~---~~~~~L~~L~L~  169 (622)
T 3g06_A          110 SNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS---------LP---ALPSELCKLWAY  169 (622)
T ss_dssp             SCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC---------CC---CCCTTCCEEECC
T ss_pred             CCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC---------cC---CccCCCCEEECC
Confidence            887777776   56778888887776 5566642    4777888887776541         11   123567777777


Q ss_pred             cCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcc
Q 009194          219 VPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQ  298 (540)
Q Consensus       219 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  298 (540)
                      +|.+..++.  ..++|+.|.++.+.+..                          ++      ..+++|+.|.+.++. ++
T Consensus       170 ~N~l~~l~~--~~~~L~~L~Ls~N~l~~--------------------------l~------~~~~~L~~L~L~~N~-l~  214 (622)
T 3g06_A          170 NNQLTSLPM--LPSGLQELSVSDNQLAS--------------------------LP------TLPSELYKLWAYNNR-LT  214 (622)
T ss_dssp             SSCCSCCCC--CCTTCCEEECCSSCCSC--------------------------CC------CCCTTCCEEECCSSC-CS
T ss_pred             CCCCCCCcc--cCCCCcEEECCCCCCCC--------------------------CC------CccchhhEEECcCCc-cc
Confidence            777666551  12444444443322221                          11      123566666665542 22


Q ss_pred             cccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeC
Q 009194          299 SVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSC  378 (540)
Q Consensus       299 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c  378 (540)
                      .+      ...+++|+.|+++++ +++.+       + ..+++|+.|+++++ .++.++.       .+++|+.|++++|
T Consensus       215 ~l------~~~~~~L~~L~Ls~N-~L~~l-------p-~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N  271 (622)
T 3g06_A          215 SL------PALPSGLKELIVSGN-RLTSL-------P-VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN  271 (622)
T ss_dssp             SC------CCCCTTCCEEECCSS-CCSCC-------C-CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS
T ss_pred             cc------CCCCCCCCEEEccCC-ccCcC-------C-CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC
Confidence            21      124689999999988 55554       2 55689999999985 6766554       4689999999997


Q ss_pred             CCCccccChHHHhhcccccEEEEccccccc
Q 009194          379 RKLKYLFSFSMAKNLLRLQKVKVEDCDDLK  408 (540)
Q Consensus       379 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  408 (540)
                       +++.+|.  .+..+++|+.|++++++--.
T Consensus       272 -~L~~lp~--~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          272 -QLTRLPE--SLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             -CCCSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred             -CCCcCCH--HHhhccccCEEEecCCCCCC
Confidence             7888854  36789999999999976443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=2.1e-17  Score=156.78  Aligned_cols=182  Identities=23%  Similarity=0.258  Sum_probs=104.6

Q ss_pred             hcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCc
Q 009194           35 IQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQ  111 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~  111 (540)
                      ++++++++++++|.+..++.  +.++++|++|++++|.+  ..++...|.++++|++|++++|.+..++ ..+.++++|+
T Consensus        26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (276)
T ss_dssp             SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence            44566666666666655543  33566666666666654  3444444566666666666666665543 4556666666


Q ss_pred             EEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcc--cchhcCCCCCCCEEECCCCccccccchhhhhcCCccc----eE
Q 009194          112 TLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ--LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE----EL  183 (540)
Q Consensus       112 ~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L  183 (540)
                      +|++++|.+.. + ..++++++|++|++++|.+..  +|..+..+++|++|++++|. +..++...++.+++|+    .|
T Consensus       104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEE
T ss_pred             EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceee
Confidence            66666666655 2 356666666666666666654  45666666666666666665 4444433345444444    56


Q ss_pred             EccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcc
Q 009194          184 YMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD  228 (540)
Q Consensus       184 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  228 (540)
                      ++++|.+..         .........+|+.|++++|.+..++..
T Consensus       183 ~ls~n~l~~---------~~~~~~~~~~L~~L~L~~n~l~~~~~~  218 (276)
T 2z62_A          183 DLSLNPMNF---------IQPGAFKEIRLKELALDTNQLKSVPDG  218 (276)
T ss_dssp             ECCSSCCCE---------ECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred             ecCCCcccc---------cCccccCCCcccEEECCCCceeecCHh
Confidence            666665541         111222223566666666665555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.74  E-value=5.7e-19  Score=171.12  Aligned_cols=269  Identities=13%  Similarity=0.001  Sum_probs=159.8

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEE
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS  136 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~  136 (540)
                      .+++|++|++++|.+  ..++...|.++++|++|++++|.+...+. +..+++|++|++++|.++..   ...++|++|+
T Consensus        32 ~~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCC--CCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred             cCCCCCEEECcCCcc--CcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEE
Confidence            456777777777765  44554556777777777777777765544 67777777777777776541   1336777777


Q ss_pred             ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhc-cCCCCccEE
Q 009194          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL-ERLTELTTL  215 (540)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L  215 (540)
                      +++|.+..++.  ..+++|++|++++|. +..++...++.+++|+.|++++|.+...        .+..+ ..+++|+.|
T Consensus       106 l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          106 AANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL  174 (317)
T ss_dssp             CCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred             CCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcc--------cHHHHhhccCcCCEE
Confidence            77777776654  236677777777776 4555443466777777777777766521        12223 356777777


Q ss_pred             EeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeecccc
Q 009194          216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE  295 (540)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (540)
                      ++++|.+..++...                         .+++|+.|+++++. ...++  .. ...+++|+.|++.+..
T Consensus       175 ~L~~N~l~~~~~~~-------------------------~l~~L~~L~Ls~N~-l~~l~--~~-~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          175 NLQYNFIYDVKGQV-------------------------VFAKLKTLDLSSNK-LAFMG--PE-FQSAAGVTWISLRNNK  225 (317)
T ss_dssp             ECTTSCCCEEECCC-------------------------CCTTCCEEECCSSC-CCEEC--GG-GGGGTTCSEEECTTSC
T ss_pred             ECCCCcCccccccc-------------------------ccccCCEEECCCCc-CCcch--hh-hcccCcccEEECcCCc
Confidence            77777765443321                         23445555554421 11111  11 2234667777776653


Q ss_pred             CcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEE
Q 009194          296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINV  375 (540)
Q Consensus       296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l  375 (540)
                       ++.+...   +..+++|+.|++++++-...    ........+++|+.+++.+++.++......    ...+.+....-
T Consensus       226 -l~~l~~~---~~~l~~L~~L~l~~N~~~~~----~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~----~~~~~~~~~~~  293 (317)
T 3o53_A          226 -LVLIEKA---LRFSQNLEHFDLRGNGFHCG----TLRDFFSKNQRVQTVAKQTVKKLTGQNEEE----CTVPTLGHYGA  293 (317)
T ss_dssp             -CCEECTT---CCCCTTCCEEECTTCCCBHH----HHHHHHHTCHHHHHHHHHHHHHHHSSSSCC----CSSTTCEEETT
T ss_pred             -ccchhhH---hhcCCCCCEEEccCCCccCc----CHHHHHhccccceEEECCCchhccCCchhc----cCCCceecccc
Confidence             2333222   45788999999998852201    111145678889999998877776654332    12233333333


Q ss_pred             eeCCCCcc
Q 009194          376 DSCRKLKY  383 (540)
Q Consensus       376 ~~c~~l~~  383 (540)
                      ..|..+..
T Consensus       294 ~cc~~l~~  301 (317)
T 3o53_A          294 YCCEDLPA  301 (317)
T ss_dssp             EEEBCCTT
T ss_pred             eeeccCCh
Confidence            45666654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.73  E-value=7.6e-17  Score=152.33  Aligned_cols=186  Identities=24%  Similarity=0.332  Sum_probs=157.6

Q ss_pred             hhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-
Q 009194           26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-  102 (540)
Q Consensus        26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-  102 (540)
                      .++.+|. .+++.+++|+++++.+..++.  +.++++|++|++++|.+  ..++..+|.++++|++|++++|.+..+|. 
T Consensus        27 ~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  103 (270)
T 2o6q_A           27 KLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQALPIG  103 (270)
T ss_dssp             CCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence            3444453 456789999999999988775  44899999999999986  67777778899999999999999998775 


Q ss_pred             ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCc
Q 009194          103 SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQ  179 (540)
Q Consensus       103 ~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~  179 (540)
                      .+..+++|++|++++|.++.  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..+++
T Consensus       104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  182 (270)
T 2o6q_A          104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTE  182 (270)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred             HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCC
Confidence            56899999999999999887  36789999999999999999988876 7899999999999998 77777766889999


Q ss_pred             cceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194          180 LEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       180 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                      |+.|++++|.+...        ....+..+++|+.|++.+|+..
T Consensus       183 L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          183 LKTLKLDNNQLKRV--------PEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCEEECCSSCCSCC--------CTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCEEECCCCcCCcC--------CHHHhccccCCCEEEecCCCee
Confidence            99999999977621        1234678899999999998754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.72  E-value=9.1e-17  Score=154.76  Aligned_cols=202  Identities=19%  Similarity=0.260  Sum_probs=158.5

Q ss_pred             EccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC
Q 009194           43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD  122 (540)
Q Consensus        43 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~  122 (540)
                      .+..+.+..+.....+++|++|.++++.+  ..++.  +..+++|++|++++|.+..++. +..+++|++|++++|.++.
T Consensus        25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           25 AAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred             HhCCCCcCceecHHHcCCcCEEEeeCCCc--cCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence            34445554444444788999999999986  44543  5889999999999999998887 8999999999999999988


Q ss_pred             cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccc
Q 009194          123 IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS  202 (540)
Q Consensus       123 ~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  202 (540)
                      +..+.++++|++|++++|.++.++. +..+++|++|++++|. +..++.  ++.+++|+.|++++|.+.         . 
T Consensus       100 ~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---------~-  165 (308)
T 1h6u_A          100 VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVS---------D-  165 (308)
T ss_dssp             CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCC---------C-
T ss_pred             chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCC---------C-
Confidence            6689999999999999999998875 8999999999999998 667766  789999999999999775         1 


Q ss_pred             hhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          203 LVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      ...+..+++|+.|++++|.+..++.....++|+.|.++.+.+....   ....+++|+.|++++
T Consensus       166 ~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~  226 (308)
T 1h6u_A          166 LTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTN  226 (308)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEE
T ss_pred             ChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccC
Confidence            2238889999999999999877765222267777777655544332   245566666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.72  E-value=5.8e-18  Score=164.01  Aligned_cols=288  Identities=13%  Similarity=0.077  Sum_probs=199.0

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCC
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS  140 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~  140 (540)
                      +...++.+..  ...+..++..+++|++|++++|.+..++ ..+..+++|++|++++|.++....+..+++|++|++++|
T Consensus        13 ~i~~ls~~~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           13 KIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEESCCTTTH--HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred             eEeeccccch--hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence            3344454443  4556677788899999999999998876 578999999999999999887334999999999999999


Q ss_pred             CCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecC
Q 009194          141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP  220 (540)
Q Consensus       141 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  220 (540)
                      .++.+|.    .++|++|++++|. +..++.   ..+++|+.|++++|.+...        ....++.+++|+.|++++|
T Consensus        91 ~l~~l~~----~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~~--------~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           91 YVQELLV----GPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITML--------RDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             EEEEEEE----CTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCSG--------GGBCTGGGSSEEEEECTTS
T ss_pred             ccccccC----CCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCCc--------cchhhhccCCCCEEECCCC
Confidence            9887764    4899999999988 666654   4578999999999987621        1235677899999999999


Q ss_pred             CCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccc
Q 009194          221 DAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSV  300 (540)
Q Consensus       221 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (540)
                      .+..++....                      ...+++|+.|+++++. ...++   +. ..+++|+.|++.+..- +..
T Consensus       155 ~l~~~~~~~~----------------------~~~l~~L~~L~L~~N~-l~~~~---~~-~~l~~L~~L~Ls~N~l-~~l  206 (317)
T 3o53_A          155 EIDTVNFAEL----------------------AASSDTLEHLNLQYNF-IYDVK---GQ-VVFAKLKTLDLSSNKL-AFM  206 (317)
T ss_dssp             CCCEEEGGGG----------------------GGGTTTCCEEECTTSC-CCEEE---CC-CCCTTCCEEECCSSCC-CEE
T ss_pred             CCCcccHHHH----------------------hhccCcCCEEECCCCc-Ccccc---cc-cccccCCEEECCCCcC-Ccc
Confidence            8765433211                      1234566666666522 12221   11 1368999999987643 333


Q ss_pred             cccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCC
Q 009194          301 VHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRK  380 (540)
Q Consensus       301 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~  380 (540)
                      ...   +..+++|+.|+++++ .++.++.     ....+++|+.|++++++--.......   .+.+++|+.+.+.+++.
T Consensus       207 ~~~---~~~l~~L~~L~L~~N-~l~~l~~-----~~~~l~~L~~L~l~~N~~~~~~~~~~---~~~~~~L~~l~l~~~~~  274 (317)
T 3o53_A          207 GPE---FQSAAGVTWISLRNN-KLVLIEK-----ALRFSQNLEHFDLRGNGFHCGTLRDF---FSKNQRVQTVAKQTVKK  274 (317)
T ss_dssp             CGG---GGGGTTCSEEECTTS-CCCEECT-----TCCCCTTCCEEECTTCCCBHHHHHHH---HHTCHHHHHHHHHHHHH
T ss_pred             hhh---hcccCcccEEECcCC-cccchhh-----HhhcCCCCCEEEccCCCccCcCHHHH---HhccccceEEECCCchh
Confidence            222   557899999999998 6776643     45678999999999865331222222   55688999999987777


Q ss_pred             CccccChHHHhhcccccEEEEcccccccc
Q 009194          381 LKYLFSFSMAKNLLRLQKVKVEDCDDLKM  409 (540)
Q Consensus       381 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  409 (540)
                      ++...+..  ...+.+....-..|..+..
T Consensus       275 l~~~~~~~--~~~~~~~~~~~~cc~~l~~  301 (317)
T 3o53_A          275 LTGQNEEE--CTVPTLGHYGAYCCEDLPA  301 (317)
T ss_dssp             HHSSSSCC--CSSTTCEEETTEEEBCCTT
T ss_pred             ccCCchhc--cCCCceecccceeeccCCh
Confidence            66553321  1122233333345666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.72  E-value=2.7e-16  Score=149.15  Aligned_cols=215  Identities=16%  Similarity=0.202  Sum_probs=164.4

Q ss_pred             EEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCc
Q 009194           41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCE  119 (540)
Q Consensus        41 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~  119 (540)
                      .++..+..+..+|... .+++++|++++|.+  ..++...|.++++|++|++++|.+..++. .+.++++|++|++++|.
T Consensus        11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTCCC--CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCccccCCCC-CCCccEEECCCCcc--cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            4556666667777633 25799999999987  55655557899999999999999987654 78899999999999999


Q ss_pred             cCC--cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccc--cchhhhhcCCccceEEccCCCccccc
Q 009194          120 LAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEV--IAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       120 ~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      ++.  +..+.++++|++|++++|.+..++. .++.+++|++|++++|. +..  +|.. ++.+++|++|++++|.+....
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCC
Confidence            887  4789999999999999999987766 58999999999999998 544  4555 899999999999999876321


Q ss_pred             ccCCCccchhhccCCCCcc-EEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          195 VEGGSNASLVELERLTELT-TLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      .     .....+.+++.|. .|++++|.+..++..... .+|+.|.++.+.+..... .....+++|+.|++++
T Consensus       166 ~-----~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          166 C-----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             G-----GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCS
T ss_pred             H-----HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccC
Confidence            1     2334445555555 899999998877766554 678888887665443321 1134567777777776

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=3.1e-16  Score=148.31  Aligned_cols=175  Identities=25%  Similarity=0.262  Sum_probs=135.8

Q ss_pred             hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEE
Q 009194           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTL  113 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L  113 (540)
                      ..++++.+++.++.+..++....+++|+.|++++|.+  ..++  .+.++++|++|++++|.+..++. .+.++++|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            3667888898888888887777888889999888886  3333  25788888899988888887654 46788888889


Q ss_pred             EcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCc
Q 009194          114 CLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       114 ~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (540)
                      ++++|.++. + ..++++++|++|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcC
Confidence            888888877 3 5578888888888888888877665 5788888888888887 5666666567888888888888876


Q ss_pred             ccccccCCCccchhhccCCCCccEEEeecCCC
Q 009194          191 GWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (540)
Q Consensus       191 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (540)
                      ...        ....++.+++|+.|++.+|..
T Consensus       194 ~~~--------~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          194 KSV--------PDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             SCC--------CTTTTTTCTTCCEEECCSSCB
T ss_pred             Ccc--------CHHHHhCCcCCCEEEccCCCc
Confidence            521        123467788888888888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=1.5e-16  Score=151.76  Aligned_cols=171  Identities=23%  Similarity=0.323  Sum_probs=125.2

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      .+++++++++++.+..++.+..+++|++|++++|.+  ..++.  +.++++|++|++++|.+..++. +..+++|++|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence            556788888888777777666778888888888776  34443  5778888888888887777654 777888888888


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      ++|.++.+..+..+++|++|++++|.++.+ ..+..+++|++|++++|. +..++.  +..+++|+.|++++|.+.    
T Consensus       120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~----  191 (291)
T 1h6t_A          120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS----  191 (291)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred             CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC----
Confidence            888777766677788888888888877776 457778888888888776 555554  677888888888877665    


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCCCC
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAEIL  225 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  225 (540)
                            .+..+..+++|+.|++++|.....
T Consensus       192 ------~l~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          192 ------DLRALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             ------BCGGGTTCTTCSEEEEEEEEEECC
T ss_pred             ------CChhhccCCCCCEEECcCCcccCC
Confidence                  123467777888888877765443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=5.2e-17  Score=150.54  Aligned_cols=199  Identities=13%  Similarity=0.184  Sum_probs=153.1

Q ss_pred             hhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCC-CCCCCCC-c
Q 009194           27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP-S  102 (540)
Q Consensus        27 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~  102 (540)
                      ++++|.  +++.++++++++|.+..++.  +.++++|++|++++|.. ...++...|.++++|++|++++ |.+..++ .
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~-l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS-CCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC-cceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            555565  67789999999999987766  33889999999999862 2566666678899999999998 8888766 4


Q ss_pred             ccccCCCCcEEEcCCCccCCcccccCCCCCC---EEEecCC-CCcccchh-cCCCCCCC-EEECCCCccccccchhhhhc
Q 009194          103 SLGRLINLQTLCLDWCELADIAAIGQLKKLE---ILSLAYS-NINQLPVE-IGQLTRLQ-LLDLSNCWWLEVIAPNVISK  176 (540)
Q Consensus       103 ~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~---~L~l~~~-~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l~~  176 (540)
                      .+.++++|++|++++|.++..+.+..+++|+   +|++++| .++.+|.. +..+++|+ +|++++|. +..+|...+..
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~  178 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG  178 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT
T ss_pred             HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC
Confidence            6788999999999999888733378888887   9999999 88888765 78899999 99999887 66787764444


Q ss_pred             CCccceEEccCCC-cccccccCCCccchhhccCC-CCccEEEeecCCCCCCCccccccCccEEEE
Q 009194          177 LSQLEELYMGNGF-SGWEKVEGGSNASLVELERL-TELTTLEIEVPDAEILPPDFVSVELQRYKI  239 (540)
Q Consensus       177 l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  239 (540)
                       ++|+.|++++|. +...        ....+..+ ++|+.|++++|.+..+|.. ..++|+.|.+
T Consensus       179 -~~L~~L~L~~n~~l~~i--------~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l  233 (239)
T 2xwt_C          179 -TKLDAVYLNKNKYLTVI--------DKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA  233 (239)
T ss_dssp             -CEEEEEECTTCTTCCEE--------CTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred             -CCCCEEEcCCCCCcccC--------CHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence             889999999884 5411        12446777 8899999999888777765 2345555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=2.7e-16  Score=149.86  Aligned_cols=183  Identities=17%  Similarity=0.123  Sum_probs=156.2

Q ss_pred             hhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc
Q 009194           26 DLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS  103 (540)
Q Consensus        26 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~  103 (540)
                      .++.+|. .+++.+++|++++|.+..++.  +..+++|+.|++++|.+  ..++..  ..+++|++|++++|.+..+|..
T Consensus        21 ~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~   95 (290)
T 1p9a_G           21 NLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVD--GTLPVLGTLDLSHNQLQSLPLL   95 (290)
T ss_dssp             CCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEECC--SCCTTCCEEECCSSCCSSCCCC
T ss_pred             CCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc--CcccCC--CCCCcCCEEECCCCcCCcCchh
Confidence            3444453 456889999999999977643  44899999999999997  444442  6899999999999999999998


Q ss_pred             cccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCcc
Q 009194          104 LGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL  180 (540)
Q Consensus       104 l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  180 (540)
                      +..+++|++|++++|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...+..+++|
T Consensus        96 ~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G           96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENL  174 (290)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTC
T ss_pred             hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCC
Confidence            9999999999999999988 4 7899999999999999999988876 6889999999999998 778888767899999


Q ss_pred             ceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194          181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                      +.|++++|.+.         ..+..+....+|+.+++.+|+..
T Consensus       175 ~~L~L~~N~l~---------~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          175 DTLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CEEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CEEECCCCcCC---------ccChhhcccccCCeEEeCCCCcc
Confidence            99999999887         34455666789999999999854

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=3.9e-16  Score=145.74  Aligned_cols=176  Identities=22%  Similarity=0.278  Sum_probs=146.3

Q ss_pred             CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcC
Q 009194           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLD  116 (540)
Q Consensus        38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~  116 (540)
                      ..++++++++.+..+|.... ++++.|++++|.+  ..++...|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            46789999999988887543 6899999999997  4555555789999999999999998765 457899999999999


Q ss_pred             CCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccc
Q 009194          117 WCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE  193 (540)
Q Consensus       117 ~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  193 (540)
                      +|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..++...++.+++|++|++++|.+...
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            999887 4 6788999999999999999988876 6889999999999998 7778776688999999999999987621


Q ss_pred             cccCCCccchhhccCCCCccEEEeecCCCCCC
Q 009194          194 KVEGGSNASLVELERLTELTTLEIEVPDAEIL  225 (540)
Q Consensus       194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  225 (540)
                              ....+..+++|+.|++.+|.+...
T Consensus       171 --------~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 --------PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             --------CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             --------CHHHHhCCCCCCEEEeeCCceeCC
Confidence                    123577889999999999986533

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.69  E-value=6.8e-17  Score=156.10  Aligned_cols=81  Identities=25%  Similarity=0.305  Sum_probs=36.8

Q ss_pred             CccCcEEEcCCCCCC-CCCccc--ccCCCCcEEEcCCCccCC-cccccCC-----CCCCEEEecCCCCcccc-hhcCCCC
Q 009194           84 MEGLKVLQFPGIGSS-SLPSSL--GRLINLQTLCLDWCELAD-IAAIGQL-----KKLEILSLAYSNINQLP-VEIGQLT  153 (540)
Q Consensus        84 l~~L~~L~l~~~~~~-~l~~~l--~~l~~L~~L~l~~~~~~~-~~~i~~l-----~~L~~L~l~~~~~~~lp-~~~~~l~  153 (540)
                      +++|++|++++|.+. .+|..+  ..+++|++|++++|.++. |..++.+     ++|++|++++|.+..++ ..++.++
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            444445554444443 234333  444445555554444443 3333333     44445555444444333 3344444


Q ss_pred             CCCEEECCCCc
Q 009194          154 RLQLLDLSNCW  164 (540)
Q Consensus       154 ~L~~L~l~~~~  164 (540)
                      +|++|++++|.
T Consensus       174 ~L~~L~Ls~N~  184 (312)
T 1wwl_A          174 ALSTLDLSDNP  184 (312)
T ss_dssp             SCCEEECCSCT
T ss_pred             CCCEEECCCCC
Confidence            45555544444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=1.3e-16  Score=150.93  Aligned_cols=180  Identities=19%  Similarity=0.261  Sum_probs=150.6

Q ss_pred             hhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCC
Q 009194           31 MEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLIN  109 (540)
Q Consensus        31 ~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~  109 (540)
                      +.-...++++++++++|.+..++.+..+++|++|++++|.+  ..++...|.++++|++|++++|.+..++. .+..+++
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc--CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence            33345789999999999998888777999999999999987  56676667899999999999999988765 4789999


Q ss_pred             CcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEcc
Q 009194          110 LQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (540)
Q Consensus       110 L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (540)
                      |++|++++|.++. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...++.+++|+.|+++
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~  213 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLH  213 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEcc
Confidence            9999999999887 4 5678999999999999999987766 6899999999999998 667777668999999999999


Q ss_pred             CCCcccccccCCCccchhhccCCCCccEEEeecCCC-CCCCcc
Q 009194          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA-EILPPD  228 (540)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~  228 (540)
                      +|.+.               +.+++|+.+++..|.. +.+|..
T Consensus       214 ~N~~~---------------~~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          214 DNPWD---------------CTCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             SSCBC---------------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred             CCCcc---------------ccCcHHHHHHHHHHhCCCcccCc
Confidence            98765               2356777777776663 344443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=2.4e-16  Score=154.15  Aligned_cols=89  Identities=16%  Similarity=0.115  Sum_probs=48.9

Q ss_pred             CCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChH
Q 009194          309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS  388 (540)
Q Consensus       309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  388 (540)
                      .+++|+.|++++|..++....    .....+++|+.|++++|..+.......   .+.+++|++|++++|  +++..   
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~l~~~--i~~~~---  287 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCF----QEFFQLNYLQHLSLSRCYDIIPETLLE---LGEIPTLKTLQVFGI--VPDGT---  287 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTS--SCTTC---
T ss_pred             hCCCCCEEeCCCCCcCCHHHH----HHHhCCCCCCEeeCCCCCCCCHHHHHH---HhcCCCCCEEeccCc--cCHHH---
Confidence            456666666666643332111    133455777777777776443332222   455788888888887  43321   


Q ss_pred             HHhhc-ccccEEEEcccccccccc
Q 009194          389 MAKNL-LRLQKVKVEDCDDLKMII  411 (540)
Q Consensus       389 ~~~~l-~~L~~L~l~~c~~l~~~~  411 (540)
                       +..+ .+|+.|++. |++++.+.
T Consensus       288 -~~~l~~~l~~L~l~-~n~l~~~~  309 (336)
T 2ast_B          288 -LQLLKEALPHLQIN-CSHFTTIA  309 (336)
T ss_dssp             -HHHHHHHSTTSEES-CCCSCCTT
T ss_pred             -HHHHHhhCcceEEe-cccCcccc
Confidence             2222 336666675 46666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=3.9e-16  Score=160.06  Aligned_cols=209  Identities=18%  Similarity=0.152  Sum_probs=150.7

Q ss_pred             cCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEE
Q 009194           36 QKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTL  113 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  113 (540)
                      .+++++|++++|.+..++.  +..+++|++|++++|.+  ...+.  +..+++|++|++++|.+..+|.    .++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC--EEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC--CCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            3478999999998877653  44889999999999886  33333  6889999999999998876553    3789999


Q ss_pred             EcCCCccCC-cccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          114 CLDWCELAD-IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       114 ~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      ++++|.++. +.  ..+++|++|++++|.++.+ |..++.+++|++|++++|......|..+.+.+++|+.|++++|.+.
T Consensus       105 ~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          105 HAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            999999887 33  2467899999999988866 4457889999999999988444455553347899999999998876


Q ss_pred             cccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          192 WEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      .          ......+++|+.|++++|.+..++..+.. ++|+.|+++.+.+...+  .....+++|+.|++++
T Consensus       183 ~----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~l~~  246 (487)
T 3oja_A          183 D----------VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRG  246 (487)
T ss_dssp             E----------EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTT
T ss_pred             c----------ccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc--hhhccCCCCCEEEcCC
Confidence            2          13344688899999999988877776544 67777777554432211  0133445566666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.65  E-value=5e-16  Score=143.91  Aligned_cols=166  Identities=16%  Similarity=0.184  Sum_probs=135.9

Q ss_pred             CCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCC-CCCCCc-ccccCCCCcEEEcCC-CccCC-c-
Q 009194           49 IQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG-SSSLPS-SLGRLINLQTLCLDW-CELAD-I-  123 (540)
Q Consensus        49 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~-~l~~l~~L~~L~l~~-~~~~~-~-  123 (540)
                      +..+|.  -.++++.|++++|.+  ..++...|.++++|++|++++|. ++.++. .+.++++|++|++++ +.++. + 
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC--CCCcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            677777  345899999999986  66776667899999999999997 887765 788999999999998 88887 4 


Q ss_pred             ccccCCCCCCEEEecCCCCcccchhcCCCCCCC---EEECCCCccccccchhhhhcCCccc-eEEccCCCcccccccCCC
Q 009194          124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ---LLDLSNCWWLEVIAPNVISKLSQLE-ELYMGNGFSGWEKVEGGS  199 (540)
Q Consensus       124 ~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~  199 (540)
                      ..+.++++|++|++++|.++.+|. +..+++|+   +|++++|..+..++...++.+++|+ .|++++|.+....     
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-----  172 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-----  172 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-----
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-----
Confidence            688999999999999999999987 88888888   9999999337888877688999999 9999998776211     


Q ss_pred             ccchhhccCCCCccEEEeecCC-CCCCCcc
Q 009194          200 NASLVELERLTELTTLEIEVPD-AEILPPD  228 (540)
Q Consensus       200 ~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~  228 (540)
                         ...+.. ++|+.|++++|. +..++..
T Consensus       173 ---~~~~~~-~~L~~L~L~~n~~l~~i~~~  198 (239)
T 2xwt_C          173 ---GYAFNG-TKLDAVYLNKNKYLTVIDKD  198 (239)
T ss_dssp             ---TTTTTT-CEEEEEECTTCTTCCEECTT
T ss_pred             ---HhhcCC-CCCCEEEcCCCCCcccCCHH
Confidence               122333 689999999994 7766554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=2.4e-15  Score=143.49  Aligned_cols=184  Identities=21%  Similarity=0.262  Sum_probs=146.7

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWC  118 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~  118 (540)
                      +.++.+....+..+.....+++|+.|++++|.+  ..++.  +..+++|++|++++|.+..++. +..+++|++|++++|
T Consensus        26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n  100 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN  100 (291)
T ss_dssp             HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             HHHHHhcCCCcccccchhhcCcccEEEccCCCc--ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence            444456666665555555788999999999986  44543  5889999999999999988877 889999999999999


Q ss_pred             ccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCC
Q 009194          119 ELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG  198 (540)
Q Consensus       119 ~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  198 (540)
                      .++.+..+..+++|++|++++|.+..++ .+..+++|++|++++|. +..++.  ++.+++|+.|++++|.+.       
T Consensus       101 ~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~-------  169 (291)
T 1h6t_A          101 KVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------  169 (291)
T ss_dssp             CCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-------
T ss_pred             cCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc-------
Confidence            9988767999999999999999998874 58899999999999988 666643  899999999999999876       


Q ss_pred             CccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEec
Q 009194          199 SNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG  242 (540)
Q Consensus       199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~  242 (540)
                        .. ..+..+++|+.|++++|.+..++. +.. ++|+.|.++.+
T Consensus       170 --~~-~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          170 --DI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             --CC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred             --cc-hhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence              12 228889999999999999877654 222 56666666543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=1.6e-15  Score=158.55  Aligned_cols=174  Identities=24%  Similarity=0.320  Sum_probs=150.6

Q ss_pred             hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ..+.++.|+++++.+..++.+..+++|+.|++++|.+  ..++.  +.++++|++|++++|.+..+| .+..+++|++|+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence            4678999999999998888877999999999999987  44554  689999999999999998877 588999999999


Q ss_pred             cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      +++|.+..+..+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +..++.  +..+++|+.|++++|.+.   
T Consensus       116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~---  188 (605)
T 1m9s_A          116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---  188 (605)
T ss_dssp             CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred             ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC---
Confidence            9999998877799999999999999999888 568999999999999998 666655  789999999999999876   


Q ss_pred             ccCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (540)
                             .+..+..+++|+.|++++|.+...|.
T Consensus       189 -------~l~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          189 -------DLRALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             -------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred             -------CChHHccCCCCCEEEccCCcCcCCcc
Confidence                   23568889999999999988654443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.63  E-value=4e-15  Score=138.81  Aligned_cols=163  Identities=21%  Similarity=0.277  Sum_probs=139.4

Q ss_pred             chhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-
Q 009194           25 ADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-  101 (540)
Q Consensus        25 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-  101 (540)
                      ..++.+|. .+++.+++|++++|.+..++.  +.++++|++|++++|.+  ..++...|.++++|++|++++|.+..+| 
T Consensus        24 ~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  100 (251)
T 3m19_A           24 KSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLASLPL  100 (251)
T ss_dssp             CCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcccccCh
Confidence            34445454 456889999999999977665  44899999999999987  5566666789999999999999999876 


Q ss_pred             cccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCC
Q 009194          102 SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLS  178 (540)
Q Consensus       102 ~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  178 (540)
                      ..+..+++|++|++++|.++. + ..+.++++|++|++++|.++.+|. .+..+++|++|++++|. +..++...+..++
T Consensus       101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  179 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLG  179 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred             hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCC
Confidence            457899999999999999988 4 567899999999999999998887 48999999999999998 6777776689999


Q ss_pred             ccceEEccCCCcc
Q 009194          179 QLEELYMGNGFSG  191 (540)
Q Consensus       179 ~L~~L~l~~~~~~  191 (540)
                      +|+.|++++|.+.
T Consensus       180 ~L~~L~l~~N~~~  192 (251)
T 3m19_A          180 KLQTITLFGNQFD  192 (251)
T ss_dssp             TCCEEECCSCCBC
T ss_pred             CCCEEEeeCCcee
Confidence            9999999999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=6.9e-16  Score=158.22  Aligned_cols=240  Identities=13%  Similarity=-0.022  Sum_probs=163.4

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEE
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILS  136 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~  136 (540)
                      .+++|++|++++|.+  ..++...|.++++|++|++++|.+...+. ++.+++|++|++++|.++..   ...++|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~~~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCC--CCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE---EECTTCCEEE
T ss_pred             cCCCccEEEeeCCcC--CCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC---CCCCCcCEEE
Confidence            455899999999986  44555556899999999999999876554 88899999999999987762   1238899999


Q ss_pred             ecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhcc-CCCCccEE
Q 009194          137 LAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELE-RLTELTTL  215 (540)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L  215 (540)
                      +++|.+..++.  ..+++|++|++++|. +..++...++.+++|+.|++++|.+...        .+..+. .+++|+.|
T Consensus       106 L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L  174 (487)
T 3oja_A          106 AANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL  174 (487)
T ss_dssp             CCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred             CcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEE
Confidence            99998887765  357889999999988 5555444478899999999999877621        234443 68899999


Q ss_pred             EeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeecccc
Q 009194          216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE  295 (540)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (540)
                      ++++|.+..++...                         .+++|+.|+++++. .+.++  .. ...+++|+.|++.+..
T Consensus       175 ~Ls~N~l~~~~~~~-------------------------~l~~L~~L~Ls~N~-l~~~~--~~-~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          175 NLQYNFIYDVKGQV-------------------------VFAKLKTLDLSSNK-LAFMG--PE-FQSAAGVTWISLRNNK  225 (487)
T ss_dssp             ECTTSCCCEEECCC-------------------------CCTTCCEEECCSSC-CCEEC--GG-GGGGTTCSEEECTTSC
T ss_pred             ecCCCccccccccc-------------------------cCCCCCEEECCCCC-CCCCC--Hh-HcCCCCccEEEecCCc
Confidence            99998876554332                         24455555555522 12221  11 2245777777777643


Q ss_pred             CcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceeccccc
Q 009194          296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL  350 (540)
Q Consensus       296 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  350 (540)
                      - ..+...   +..+++|+.|++++++-...    ........++.|+.+.+..+
T Consensus       226 l-~~lp~~---l~~l~~L~~L~l~~N~l~c~----~~~~~~~~l~~L~~l~~~~~  272 (487)
T 3oja_A          226 L-VLIEKA---LRFSQNLEHFDLRGNGFHCG----TLRDFFSKNQRVQTVAKQTV  272 (487)
T ss_dssp             C-CEECTT---CCCCTTCCEEECTTCCBCHH----HHHHHHTTCHHHHHHHHHHH
T ss_pred             C-cccchh---hccCCCCCEEEcCCCCCcCc----chHHHHHhCCCCcEEecccc
Confidence            2 232222   45788999999998852200    11113456777777777543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=6.7e-16  Score=144.92  Aligned_cols=172  Identities=19%  Similarity=0.203  Sum_probs=136.4

Q ss_pred             hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ...++.++++..+.+..++....+++|+.|++++|.+  ..++ . +..+++|++|++++|.+..++. +..+++|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            3455667778888887777666888999999999876  4555 2 5788999999999999888877 88899999999


Q ss_pred             cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      +++|.++....+.. ++|++|++++|.++.++ .+..+++|++|++++|. +..++.  ++.+++|+.|++++|.+.   
T Consensus        92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~---  163 (263)
T 1xeu_A           92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT---  163 (263)
T ss_dssp             CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC---
T ss_pred             CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc---
Confidence            99998887333444 88999999999888876 58889999999999988 666663  788999999999988776   


Q ss_pred             ccCCCccchhhccCCCCccEEEeecCCCCCCC
Q 009194          195 VEGGSNASLVELERLTELTTLEIEVPDAEILP  226 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  226 (540)
                            . ...+..+++|+.|++++|.....+
T Consensus       164 ------~-~~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          164 ------N-TGGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             ------B-CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred             ------c-hHHhccCCCCCEEeCCCCcccCCc
Confidence                  1 156778889999999988765444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=1.4e-15  Score=146.91  Aligned_cols=218  Identities=15%  Similarity=0.150  Sum_probs=173.1

Q ss_pred             cCCCeEEEccCCCCCC--CCCcC--------CCCCccEEEcccCCCCCccccHHHH-hcCccCcEEEcCCCCCCCCCccc
Q 009194           36 QKDPIAISLPHRDIQE--LPERL--------QCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSLPSSL  104 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~l~~~l  104 (540)
                      ...+++++++++.+..  ++...        ++++|++|++++|.+ ....+..+| ..+++|++|++++|.+...|..+
T Consensus        62 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  140 (312)
T 1wwl_A           62 TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWL  140 (312)
T ss_dssp             HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHH
T ss_pred             HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHH
Confidence            3348888888888743  44322        589999999999987 445665543 78999999999999998888878


Q ss_pred             ccC-----CCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcc---cchhc--CCCCCCCEEECCCCcccc---cc
Q 009194          105 GRL-----INLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ---LPVEI--GQLTRLQLLDLSNCWWLE---VI  169 (540)
Q Consensus       105 ~~l-----~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~---lp~~~--~~l~~L~~L~l~~~~~~~---~~  169 (540)
                      +.+     ++|++|++++|.+.. + ..++++++|++|++++|.+..   +|..+  ..+++|++|++++|. +.   .+
T Consensus       141 ~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~  219 (312)
T 1wwl_A          141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGV  219 (312)
T ss_dssp             HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHH
T ss_pred             HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHH
Confidence            777     899999999999887 4 889999999999999998653   45555  889999999999998 55   44


Q ss_pred             chhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCC
Q 009194          170 APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEF  249 (540)
Q Consensus       170 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  249 (540)
                      +...+..+++|+.|++++|.+....       ....+..+++|+.|++++|.+..+|..+. ++|+.|+++.+.+.... 
T Consensus       220 ~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p-  290 (312)
T 1wwl_A          220 CSALAAARVQLQGLDLSHNSLRDAA-------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNP-  290 (312)
T ss_dssp             HHHHHHTTCCCSEEECTTSCCCSSC-------CCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCC-
T ss_pred             HHHHHhcCCCCCEEECCCCcCCccc-------chhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCCh-
Confidence            4444568899999999999876211       12345667899999999999988888766 89999999887765552 


Q ss_pred             CccccccccccEEEEec
Q 009194          250 DPLLVKSEASRLMMLKG  266 (540)
Q Consensus       250 ~~~~~~~~~L~~L~l~~  266 (540)
                        ....+++|+.|++++
T Consensus       291 --~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          291 --SPDELPQVGNLSLKG  305 (312)
T ss_dssp             --CTTTSCEEEEEECTT
T ss_pred             --hHhhCCCCCEEeccC
Confidence              256788999999987

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=7.5e-16  Score=150.57  Aligned_cols=173  Identities=15%  Similarity=0.154  Sum_probs=109.3

Q ss_pred             CCCeEEEccCCCCCCCCCc-CCC--CCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC--CCcccccCCCCc
Q 009194           37 KDPIAISLPHRDIQELPER-LQC--PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS--LPSSLGRLINLQ  111 (540)
Q Consensus        37 ~~l~~l~l~~~~~~~l~~~-~~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~  111 (540)
                      ...++++++++.+.  +.. ..+  ++++.|.+.+|.+ ....+ .+ .++++|++|++++|.+..  ++..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l-~~~~~-~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM-DQPLA-EH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE-CSCCC-SC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccc-cccch-hh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            34677777766553  111 133  6777777777765 22222 22 467777777777777653  566667777777


Q ss_pred             EEEcCCCccCC--cccccCCCCCCEEEecCC-CCc--ccchhcCCCCCCCEEECCCC-ccccc--cchhhhhcCC-ccce
Q 009194          112 TLCLDWCELAD--IAAIGQLKKLEILSLAYS-NIN--QLPVEIGQLTRLQLLDLSNC-WWLEV--IAPNVISKLS-QLEE  182 (540)
Q Consensus       112 ~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~-~~~~~--~~~~~l~~l~-~L~~  182 (540)
                      +|++++|.+.+  +..++++++|++|++++| .++  .++..+..+++|++|++++| . +..  ++. .++.++ +|++
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~-~~~~l~~~L~~  199 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQV-AVAHVSETITQ  199 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHH-HHHHSCTTCCE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHH-HHHhcccCCCE
Confidence            77777777664  566777777777777777 565  36666777777777777777 4 332  333 366777 7777


Q ss_pred             EEccCCCcccccccCCCccchhhccCCCCccEEEeecCC
Q 009194          183 LYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD  221 (540)
Q Consensus       183 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  221 (540)
                      |++++|....     .+...+..+..+++|+.|++++|.
T Consensus       200 L~l~~~~~~~-----~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          200 LNLSGYRKNL-----QKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             EECCSCGGGS-----CHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             EEeCCCcccC-----CHHHHHHHHhhCCCCCEEeCCCCC
Confidence            7777763210     011234445667777777777776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.61  E-value=5.5e-16  Score=149.60  Aligned_cols=222  Identities=14%  Similarity=0.075  Sum_probs=115.4

Q ss_pred             CCCCccEEEcccCCCCCccccHHH--HhcCccCcEEEcCCCCCCC-CCccc--ccCCCCcEEEcCCCccCC--c----cc
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHF--FEGMEGLKVLQFPGIGSSS-LPSSL--GRLINLQTLCLDWCELAD--I----AA  125 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~~l--~~l~~L~~L~l~~~~~~~--~----~~  125 (540)
                      ....++.+.+.++.. .......+  +..+++|++|++++|.+.. .|..+  ..+++|++|++++|.+..  +    ..
T Consensus        62 ~~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           62 KALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             SSCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             hhcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence            334456666665554 21111111  1134557777777766653 44444  666667777777766553  1    23


Q ss_pred             ccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccc--cch-hhhhcCCccceEEccCCCcccccccCCCcc
Q 009194          126 IGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEV--IAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNA  201 (540)
Q Consensus       126 i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  201 (540)
                      +..+++|++|++++|.+..++ ..++.+++|++|++++|...+.  ++. ..++.+++|++|++++|.+....      .
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~------~  214 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT------G  214 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH------H
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH------H
Confidence            345667777777777666544 3466667777777776653221  111 11245666777777666554110      1


Q ss_pred             chh-hccCCCCccEEEeecCCCCCC-Cccccc----cCccEEEEEecCCCCCCCCccccccccccEEEEecccccccccc
Q 009194          202 SLV-ELERLTELTTLEIEVPDAEIL-PPDFVS----VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQE  275 (540)
Q Consensus       202 ~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  275 (540)
                      ... -++.+++|++|++++|.+... |..+..    ++|+.|.++.+.+...+.    ...++|+.|+++++. .+.++ 
T Consensus       215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~L~~L~Ls~N~-l~~~~-  288 (310)
T 4glp_A          215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK----GLPAKLRVLDLSSNR-LNRAP-  288 (310)
T ss_dssp             HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS----CCCSCCSCEECCSCC-CCSCC-
T ss_pred             HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh----hhcCCCCEEECCCCc-CCCCc-
Confidence            111 135566677777777665544 333322    466666665555443211    112577777776622 12211 


Q ss_pred             chhhhhhhcccceeeeccc
Q 009194          276 NDGTKMLLQRTEDLWLETL  294 (540)
Q Consensus       276 ~~~~~~~~~~L~~L~l~~~  294 (540)
                       .  ...+++|+.|++.+.
T Consensus       289 -~--~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          289 -Q--PDELPEVDNLTLDGN  304 (310)
T ss_dssp             -C--TTSCCCCSCEECSST
T ss_pred             -h--hhhCCCccEEECcCC
Confidence             1  233567777766653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.61  E-value=4e-15  Score=133.31  Aligned_cols=150  Identities=19%  Similarity=0.224  Sum_probs=104.7

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCE
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI  134 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~  134 (540)
                      .+++|+.|++++|.+  ..++ . +..+++|++|++++|.+..++ .+..+++|++|++++|.++.  +..++++++|++
T Consensus        42 ~l~~L~~L~l~~n~i--~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINV--TDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCC--SCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCc--cChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            566777777777775  3444 2 467777777777777665554 56777788888888877765  577777888888


Q ss_pred             EEecCCCCcc-cchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCcc
Q 009194          135 LSLAYSNINQ-LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELT  213 (540)
Q Consensus       135 L~l~~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~  213 (540)
                      |++++|.++. .|..++.+++|++|++++|..+..++.  ++.+++|+.|++++|.+.          .+..+..+++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~----------~~~~l~~l~~L~  184 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH----------DYRGIEDFPKLN  184 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC----------CCTTGGGCSSCC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc----------ChHHhccCCCCC
Confidence            8888877763 566677788888888887765666663  677788888888777665          122566777888


Q ss_pred             EEEeecCCCC
Q 009194          214 TLEIEVPDAE  223 (540)
Q Consensus       214 ~L~l~~~~~~  223 (540)
                      .|++++|.++
T Consensus       185 ~L~l~~N~i~  194 (197)
T 4ezg_A          185 QLYAFSQTIG  194 (197)
T ss_dssp             EEEECBC---
T ss_pred             EEEeeCcccC
Confidence            8888877754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=4.5e-15  Score=134.30  Aligned_cols=170  Identities=18%  Similarity=0.250  Sum_probs=127.5

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~  118 (540)
                      +.++..++.+..+|... .++++.|++++|.+  ..++..+|.++++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            46677777776666532 45788888888886  45666667788889999998888887765 4578888999999888


Q ss_pred             ccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          119 ELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      .++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+.    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence            8877 4 5578888899999988888877765 6788889999988887 66677665788888888888887654    


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCC-CCCcc
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAE-ILPPD  228 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~  228 (540)
                                 ..+++|+.|+++.|.+. .+|..
T Consensus       162 -----------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 -----------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             -----------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             -----------cCCCCHHHHHHHHHhCCceeecc
Confidence                       24566777777766533 44443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=1.7e-14  Score=132.41  Aligned_cols=149  Identities=22%  Similarity=0.273  Sum_probs=120.9

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~  117 (540)
                      .+.++.+++.+..+|... .++|+.|++++|.+  ..+....|.++++|++|++++|.+..+|. .+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCC-CCCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            456888888888887643 37899999999887  44544556888999999999999888774 458889999999999


Q ss_pred             CccCC-c-ccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      |.++. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++...+..+++|+.|++.+|.+.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            98887 4 55788999999999999888888888889999999999887 66777666788888888888888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.58  E-value=1.5e-14  Score=129.46  Aligned_cols=146  Identities=19%  Similarity=0.260  Sum_probs=121.4

Q ss_pred             hcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEEC
Q 009194           82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDL  160 (540)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l  160 (540)
                      ..+++|++|+++++.+..+| .+..+++|++|++++|.++.+..+..+++|++|++++|.++. .|..++.+++|++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            57889999999999999888 689999999999999988877789999999999999999885 6778999999999999


Q ss_pred             CCCccccccchhhhhcCCccceEEccCCC-cccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEE
Q 009194          161 SNCWWLEVIAPNVISKLSQLEELYMGNGF-SGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYK  238 (540)
Q Consensus       161 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~  238 (540)
                      ++|......+.. ++.+++|++|++++|. +.          .+..+..+++|+.|++++|.+..++ .+.. ++|+.|.
T Consensus       120 s~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~----------~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~  187 (197)
T 4ezg_A          120 SHSAHDDSILTK-INTLPKVNSIDLSYNGAIT----------DIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLY  187 (197)
T ss_dssp             CSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC----------CCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEE
T ss_pred             cCCccCcHhHHH-HhhCCCCCEEEccCCCCcc----------ccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEE
Confidence            999844445554 8999999999999997 43          2246888999999999999987765 2222 5555555


Q ss_pred             EE
Q 009194          239 IR  240 (540)
Q Consensus       239 l~  240 (540)
                      +.
T Consensus       188 l~  189 (197)
T 4ezg_A          188 AF  189 (197)
T ss_dssp             EC
T ss_pred             ee
Confidence            53

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=4.8e-15  Score=142.94  Aligned_cols=220  Identities=12%  Similarity=0.022  Sum_probs=157.9

Q ss_pred             cCCCeEEEccCCCCCC--C---CCcCCCCCccEEEcccCCCCCccccHHHH-hcCccCcEEEcCCCCCCCC-C----ccc
Q 009194           36 QKDPIAISLPHRDIQE--L---PERLQCPNLQLFLLYTEGNGPMQVSDHFF-EGMEGLKVLQFPGIGSSSL-P----SSL  104 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~--l---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~l-~----~~l  104 (540)
                      ...++++.+.+..+..  +   .....+++|++|++++|.+ ....+..++ .++++|++|++++|.+... +    ..+
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            3457888888777622  2   2233556799999999887 444444333 6789999999999988752 2    233


Q ss_pred             ccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcc---cchh--cCCCCCCCEEECCCCccccccchh---hh
Q 009194          105 GRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQ---LPVE--IGQLTRLQLLDLSNCWWLEVIAPN---VI  174 (540)
Q Consensus       105 ~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~---lp~~--~~~l~~L~~L~l~~~~~~~~~~~~---~l  174 (540)
                      ..+++|++|++++|.+..  +..++.+++|++|++++|.+..   ++..  ++.+++|++|++++|. +..++..   .+
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence            468899999999999876  4788899999999999997653   3333  4688899999999987 5544432   35


Q ss_pred             hcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCcccc
Q 009194          175 SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLV  254 (540)
Q Consensus       175 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  254 (540)
                      +.+++|++|++++|.+....+     .....+..+++|++|++++|.+..+|..+. ++|+.|+++.+.+..+..   ..
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p-----~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~---~~  291 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVN-----PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ---PD  291 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCC-----SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC---TT
T ss_pred             hcCCCCCEEECCCCCCCccch-----hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch---hh
Confidence            778999999999988762110     112223334789999999999888887654 789999998777655422   45


Q ss_pred             ccccccEEEEec
Q 009194          255 KSEASRLMMLKG  266 (540)
Q Consensus       255 ~~~~L~~L~l~~  266 (540)
                      .+++|+.|++++
T Consensus       292 ~l~~L~~L~L~~  303 (310)
T 4glp_A          292 ELPEVDNLTLDG  303 (310)
T ss_dssp             SCCCCSCEECSS
T ss_pred             hCCCccEEECcC
Confidence            678999999987

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.58  E-value=3.2e-15  Score=156.41  Aligned_cols=185  Identities=21%  Similarity=0.259  Sum_probs=150.4

Q ss_pred             CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCC
Q 009194           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW  117 (540)
Q Consensus        38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~  117 (540)
                      .+.++.+..+.+..+.....+++|+.|.+++|.+  ..++.  +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus        22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCC--CCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred             HHHHHhccCCCcccccchhcCCCCCEEECcCCCC--CCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence            3555666666666666666888999999999986  44543  5899999999999999988876 88999999999999


Q ss_pred             CccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccC
Q 009194          118 CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG  197 (540)
Q Consensus       118 ~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  197 (540)
                      |.+..++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|. +..++.  ++.+++|+.|++++|.+.      
T Consensus        97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~------  166 (605)
T 1m9s_A           97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS------  166 (605)
T ss_dssp             SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC------
T ss_pred             CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC------
Confidence            99988778999999999999999998875 58899999999999998 666643  899999999999999876      


Q ss_pred             CCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEec
Q 009194          198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG  242 (540)
Q Consensus       198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~  242 (540)
                         .... +..+++|+.|++++|.+..++. +.. ++|+.|.+..+
T Consensus       167 ---~~~~-l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          167 ---DIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ  207 (605)
T ss_dssp             ---CCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCSE
T ss_pred             ---Cchh-hccCCCCCEEECcCCCCCCChH-HccCCCCCEEEccCC
Confidence               1222 8889999999999999877643 233 77777777543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.57  E-value=2.1e-14  Score=130.87  Aligned_cols=148  Identities=20%  Similarity=0.239  Sum_probs=100.7

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~  118 (540)
                      +.++.+++.+..+|.... ++++.|++++|.+  ..++...|.++++|++|++++|.+..+ |..+.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            456777777777766332 5777777777775  445554556777777777777777654 566777777777777777


Q ss_pred             ccCC-c-ccccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          119 ELAD-I-AAIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      .++. + ..+.++++|++|++++|.++.++ ..+..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            7766 4 44567777777777777777553 346777777777777776 55555554666777777777766553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.57  E-value=2.4e-14  Score=130.46  Aligned_cols=149  Identities=15%  Similarity=0.211  Sum_probs=109.3

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~  118 (540)
                      ++++++++.+..+|... .+.++.|++++|.+ ....+.++|.++++|++|++++|.++.++. .+.++++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            47888888887777633 34567888888876 322234456788888888888888876654 6788888888888888


Q ss_pred             ccCC-c-ccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          119 ELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       119 ~~~~-~-~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      .++. + ..+.++++|++|++++|.++.+ |..+..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence            8776 3 5678888888888888888766 4557788888888888877 55554444777888888888777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=1.2e-13  Score=135.43  Aligned_cols=238  Identities=17%  Similarity=0.163  Sum_probs=130.4

Q ss_pred             cEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCc-ccchh-cCCCCCCCEEECC-C
Q 009194           88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNIN-QLPVE-IGQLTRLQLLDLS-N  162 (540)
Q Consensus        88 ~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~-~lp~~-~~~l~~L~~L~l~-~  162 (540)
                      ++++.+++.++.+|..+  .+++++|++++|.++. + ..+.++++|++|++++|.+. .+|.. +.++++++++... .
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            56777777777777655  3567888888888776 4 46777888888888887653 45543 5677776654433 3


Q ss_pred             CccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecC-CCCCCCccccccCccEEEEEe
Q 009194          163 CWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP-DAEILPPDFVSVELQRYKIRI  241 (540)
Q Consensus       163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~  241 (540)
                      +. +..++...++.+++|+.|++++|.+.....        ..+....++..+++..+ .+..++....           
T Consensus        90 N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f-----------  149 (350)
T 4ay9_X           90 NN-LLYINPEAFQNLPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSF-----------  149 (350)
T ss_dssp             TT-CCEECTTSBCCCTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSS-----------
T ss_pred             Cc-ccccCchhhhhccccccccccccccccCCc--------hhhcccchhhhhhhccccccccccccch-----------
Confidence            33 556655556667777777766665541110        11122234445555432 2332222110           


Q ss_pred             cCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccc
Q 009194          242 GDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDC  321 (540)
Q Consensus       242 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  321 (540)
                                 ......++.|++++                           . .++.+...   ....++|+.+.+.++
T Consensus       150 -----------~~~~~~l~~L~L~~---------------------------N-~i~~i~~~---~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          150 -----------VGLSFESVILWLNK---------------------------N-GIQEIHNS---AFNGTQLDELNLSDN  187 (350)
T ss_dssp             -----------TTSBSSCEEEECCS---------------------------S-CCCEECTT---SSTTEEEEEEECTTC
T ss_pred             -----------hhcchhhhhhcccc---------------------------c-cccCCChh---hccccchhHHhhccC
Confidence                       01112233344333                           1 11111111   112345666666666


Q ss_pred             cCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEE
Q 009194          322 SEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKV  401 (540)
Q Consensus       322 ~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l  401 (540)
                      ..++.++..    ....+++|+.|++++ +.++.++.      +.+.+|+.|.+.++..++.+|+   +..+++|+.+++
T Consensus       188 n~l~~i~~~----~f~~l~~L~~LdLs~-N~l~~lp~------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l  253 (350)
T 4ay9_X          188 NNLEELPND----VFHGASGPVILDISR-TRIHSLPS------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASL  253 (350)
T ss_dssp             TTCCCCCTT----TTTTEECCSEEECTT-SCCCCCCS------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEEC
T ss_pred             CcccCCCHH----HhccCcccchhhcCC-CCcCccCh------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcC
Confidence            566655432    335566677777766 34555543      2356677777777777777754   456677777777


Q ss_pred             cc
Q 009194          402 ED  403 (540)
Q Consensus       402 ~~  403 (540)
                      .+
T Consensus       254 ~~  255 (350)
T 4ay9_X          254 TY  255 (350)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=5.4e-14  Score=131.91  Aligned_cols=147  Identities=21%  Similarity=0.214  Sum_probs=130.1

Q ss_pred             hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ..+++++++++++.+..++....+++|+.|++++|.+  ..++.  +.++++|++|++++|.+..+|....  ++|++|+
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~  112 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF  112 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence            4678999999999999888777999999999999987  55555  6899999999999999998876433  9999999


Q ss_pred             cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      +++|.++.+..+.++++|++|++++|.++.++ .+..+++|++|++++|. +..++.  +..+++|+.|++++|.+.
T Consensus       113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEEEE
T ss_pred             ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCccc
Confidence            99999998667999999999999999999887 68999999999999998 556633  899999999999998765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.54  E-value=1.3e-13  Score=142.68  Aligned_cols=174  Identities=17%  Similarity=0.179  Sum_probs=136.2

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      ..+++.|+++++.+..+|... .++|++|++++|.+  ..++    ..+++|++|++++|.++.+|. +.+  +|++|++
T Consensus        58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l--~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNAL--ISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV  127 (571)
T ss_dssp             HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCC--SCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred             cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCC--cccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence            458999999999998888754 48899999999987  4666    457999999999999988888 655  8999999


Q ss_pred             CCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       116 ~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      ++|.++. |.   .+++|++|++++|.++.+|.   .+++|++|++++|. +..+|.  +.  ++|+.|++++|.+... 
T Consensus       128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~~l-  195 (571)
T 3cvr_A          128 DNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLESL-  195 (571)
T ss_dssp             CSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCSSC-
T ss_pred             CCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCCch-
Confidence            9999888 45   78999999999999998887   67899999999988 666776  44  8999999999987621 


Q ss_pred             ccCCCccchhhccC-----CCCccEEEeecCCCCCCCccccc-cCccEEEEE
Q 009194          195 VEGGSNASLVELER-----LTELTTLEIEVPDAEILPPDFVS-VELQRYKIR  240 (540)
Q Consensus       195 ~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~  240 (540)
                              +. +..     .+.|+.|++++|.+..+|..+.. ++|+.|.++
T Consensus       196 --------p~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~  238 (571)
T 3cvr_A          196 --------PA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE  238 (571)
T ss_dssp             --------CC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred             --------hh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence                    11 222     22339999999998888876444 455555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=5.8e-14  Score=137.76  Aligned_cols=148  Identities=17%  Similarity=0.152  Sum_probs=70.4

Q ss_pred             EEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-CC-cccccCCCCcE-EEcCC
Q 009194           41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LP-SSLGRLINLQT-LCLDW  117 (540)
Q Consensus        41 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~l~~l~~L~~-L~l~~  117 (540)
                      .++.+++.+..+|..+ .+++++|++++|.+  ..++.+.|.++++|++|++++|.+.+ +| ..+.+++++++ +.+..
T Consensus        13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCCSCCTTC-CTTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCCccCcCc-CCCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            3444555555555422 23555555555554  44554445555555555555555432 33 23445555443 23333


Q ss_pred             CccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCC-ccceEEccCCCcc
Q 009194          118 CELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSG  191 (540)
Q Consensus       118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  191 (540)
                      +.++.  +..+..+++|++|++++|.+..+|.. +....++..+++.++..+..++...+..+. .++.|++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            44444  24455555555555555555544432 333444555555443334444433333332 3455555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.53  E-value=6e-15  Score=147.05  Aligned_cols=182  Identities=13%  Similarity=0.079  Sum_probs=90.9

Q ss_pred             cCCCeEEEccCCCCCC-----CCC-cCCCCCccEEEcccCCC--CCccccHHH------HhcCccCcEEEcCCCCCCC--
Q 009194           36 QKDPIAISLPHRDIQE-----LPE-RLQCPNLQLFLLYTEGN--GPMQVSDHF------FEGMEGLKVLQFPGIGSSS--   99 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~------~~~l~~L~~L~l~~~~~~~--   99 (540)
                      .+++++|++++|.+..     +.. +..+++|++|++++|..  ....+|..+      +.++++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4456666666665532     111 22556666666666532  011222222      2456666666666666543  


Q ss_pred             ---CCcccccCCCCcEEEcCCCccCC--ccc----ccCC---------CCCCEEEecCCCCc--ccc---hhcCCCCCCC
Q 009194          100 ---LPSSLGRLINLQTLCLDWCELAD--IAA----IGQL---------KKLEILSLAYSNIN--QLP---VEIGQLTRLQ  156 (540)
Q Consensus       100 ---l~~~l~~l~~L~~L~l~~~~~~~--~~~----i~~l---------~~L~~L~l~~~~~~--~lp---~~~~~l~~L~  156 (540)
                         +|..+..+++|++|++++|.+..  +..    +..+         ++|++|++++|.+.  .+|   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               44455566666666666666542  222    2222         56666666666554  333   3345556666


Q ss_pred             EEECCCCccccc-----cchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCC
Q 009194          157 LLDLSNCWWLEV-----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (540)
Q Consensus       157 ~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (540)
                      +|++++|. +..     +....+..+++|+.|++++|.+....    ....+..+..+++|+.|++++|.+
T Consensus       191 ~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          191 TVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             EEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             EEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCC
Confidence            66666655 221     11112455666666666665542100    012234455556666666665554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.50  E-value=6.3e-14  Score=138.07  Aligned_cols=172  Identities=19%  Similarity=0.179  Sum_probs=127.3

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHh-cCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFE-GMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDW  117 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~  117 (540)
                      +.++++++.+..+|... .+.++.|++++|.+  ..++...|. ++++|++|++++|.+..++ ..+.++++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            57788888887777633 34588888888876  556555566 7888888888888888765 4678888888888888


Q ss_pred             CccCC-c-ccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCccccccchhhh---hcCCccceEEccCCCcc
Q 009194          118 CELAD-I-AAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWWLEVIAPNVI---SKLSQLEELYMGNGFSG  191 (540)
Q Consensus       118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~  191 (540)
                      |.++. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+   ..+++|+.|++++|.+.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            88876 3 5678888888888888888866 4558888888888888887 677777644   56888888888888776


Q ss_pred             cccccCCCccchhhccCCCC--ccEEEeecCCCC
Q 009194          192 WEKVEGGSNASLVELERLTE--LTTLEIEVPDAE  223 (540)
Q Consensus       192 ~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~  223 (540)
                      ...        ...+..++.  ++.|++.+|+..
T Consensus       177 ~l~--------~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          177 KLP--------LTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCC--------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccC--------HHHhhhccHhhcceEEecCCCcc
Confidence            211        234555555  477888887754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=8.3e-14  Score=121.23  Aligned_cols=138  Identities=22%  Similarity=0.193  Sum_probs=79.8

Q ss_pred             CccCcEEEcCCCCCC--CCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEEC
Q 009194           84 MEGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDL  160 (540)
Q Consensus        84 l~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l  160 (540)
                      .++|++|++++|.+.  .+|..+..+++|++|++++|.++....+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            355666666666665  5665556666666666666665555555666666666666666655 5555555666666666


Q ss_pred             CCCccccccch-hhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194          161 SNCWWLEVIAP-NVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (540)
Q Consensus       161 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (540)
                      ++|. +..++. ..++.+++|+.|++++|.+....     ......+..+++|+.|++..|....+|.
T Consensus       103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLN-----DYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             BSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTST-----THHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             cCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchH-----HHHHHHHHhCccCcEecCCCCChhhccc
Confidence            6665 444431 22566666666666666554110     0011245666667777776666555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.50  E-value=4.2e-14  Score=139.51  Aligned_cols=103  Identities=14%  Similarity=0.170  Sum_probs=47.9

Q ss_pred             CccEEEcccCCCCCccccH----HHHhcCc-cCcEEEcCCCCCCCC-CcccccC-----CCCcEEEcCCCccCC--ccc-
Q 009194           60 NLQLFLLYTEGNGPMQVSD----HFFEGME-GLKVLQFPGIGSSSL-PSSLGRL-----INLQTLCLDWCELAD--IAA-  125 (540)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-~~~l~~l-----~~L~~L~l~~~~~~~--~~~-  125 (540)
                      +|++|++++|.+  .....    +.+.+++ +|++|++++|.+... +..+..+     ++|++|++++|.++.  +.. 
T Consensus        23 ~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           23 GVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            355566655554  22222    3344555 555555555555432 2233332     555555555555543  221 


Q ss_pred             ---ccCC-CCCCEEEecCCCCcccchh-----cCC-CCCCCEEECCCCc
Q 009194          126 ---IGQL-KKLEILSLAYSNINQLPVE-----IGQ-LTRLQLLDLSNCW  164 (540)
Q Consensus       126 ---i~~l-~~L~~L~l~~~~~~~lp~~-----~~~-l~~L~~L~l~~~~  164 (540)
                         +..+ ++|++|++++|.++..+..     +.. .++|++|++++|.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence               2233 5555555555555433221     222 2355555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.50  E-value=8.8e-14  Score=137.07  Aligned_cols=155  Identities=21%  Similarity=0.240  Sum_probs=79.0

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccc-cCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEe
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLG-RLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL  137 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~-~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l  137 (540)
                      ++++++++..  ..+|..+   .+.+++|++++|.+..++. .+. ++++|++|++++|.++. + ..+.++++|++|++
T Consensus        21 ~~l~c~~~~l--~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQL--PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCC--SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCc--CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            3455555543  4444322   2345566666666555433 233 55666666666666554 2 45556666666666


Q ss_pred             cCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194          138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (540)
Q Consensus       138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (540)
                      ++|.++.++.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+.....     .....+..+++|+.|+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-----~~~~~~~~l~~L~~L~  169 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPV-----ELIKDGNKLPKLMLLD  169 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCG-----GGTC----CTTCCEEE
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCH-----HHhcCcccCCcCCEEE
Confidence            66665555443 5556666666666655 444433335556666666666655541110     0111114455666666


Q ss_pred             eecCCCCCCCc
Q 009194          217 IEVPDAEILPP  227 (540)
Q Consensus       217 l~~~~~~~~~~  227 (540)
                      +++|.+..++.
T Consensus       170 L~~N~l~~l~~  180 (361)
T 2xot_A          170 LSSNKLKKLPL  180 (361)
T ss_dssp             CCSSCCCCCCH
T ss_pred             CCCCCCCccCH
Confidence            66666555553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.50  E-value=3.9e-14  Score=139.74  Aligned_cols=186  Identities=11%  Similarity=0.138  Sum_probs=135.7

Q ss_pred             hcCCCeEEEccCCCCCCCCC------cCCCC-CccEEEcccCCCCCccccHHHHhcC-----ccCcEEEcCCCCCCCCCc
Q 009194           35 IQKDPIAISLPHRDIQELPE------RLQCP-NLQLFLLYTEGNGPMQVSDHFFEGM-----EGLKVLQFPGIGSSSLPS  102 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~l~~  102 (540)
                      ..+++++|++++|.+...+.      +..++ +|++|++++|.+  .......+..+     ++|++|++++|.+...+.
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            45669999999999976652      23677 899999999987  33322223443     999999999999875443


Q ss_pred             -c----cccC-CCCcEEEcCCCccCC--ccc----ccC-CCCCCEEEecCCCCc-----ccchhcCCCC-CCCEEECCCC
Q 009194          103 -S----LGRL-INLQTLCLDWCELAD--IAA----IGQ-LKKLEILSLAYSNIN-----QLPVEIGQLT-RLQLLDLSNC  163 (540)
Q Consensus       103 -~----l~~l-~~L~~L~l~~~~~~~--~~~----i~~-l~~L~~L~l~~~~~~-----~lp~~~~~l~-~L~~L~l~~~  163 (540)
                       .    +..+ ++|++|++++|.++.  +..    +.. ..+|++|++++|.+.     .++..+..++ +|++|++++|
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence             2    4455 899999999999876  333    344 369999999999887     5566666776 9999999999


Q ss_pred             ccccccchhh----hhcC-CccceEEccCCCcccccccCCCccchhhccC-CCCccEEEeecCCCCCCCc
Q 009194          164 WWLEVIAPNV----ISKL-SQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPDAEILPP  227 (540)
Q Consensus       164 ~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~  227 (540)
                      . +...+...    +..+ ++|++|++++|.+...    ........+.. .++|++|++++|.+...+.
T Consensus       178 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          178 N-LASKNCAELAKFLASIPASVTSLDLSANLLGLK----SYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             C-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----CHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             C-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----HHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            8 54444322    3445 5999999999987621    11224455555 4599999999999776554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=1.4e-13  Score=125.45  Aligned_cols=147  Identities=16%  Similarity=0.184  Sum_probs=108.9

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEec
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA  138 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~  138 (540)
                      +.++.+++..  ..+|..+   .+++++|++++|.+..++. .+..+++|++|++++|.++.  +..+.++++|++|+++
T Consensus        14 ~~v~c~~~~l--~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGL--TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCC--SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCc--CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            4677777764  5566533   3678888888888877654 67788888888888888776  5778888888888888


Q ss_pred             CCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEe
Q 009194          139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI  217 (540)
Q Consensus       139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  217 (540)
                      +|.++.+|.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+....        ...+..+++|+.|++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA--------KGTFSPLRAIQTMHL  159 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEEC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC--------HHHHhCCCCCCEEEe
Confidence            8888887766 5778888888888887 56665555778888888888888765211        234667778888888


Q ss_pred             ecCCC
Q 009194          218 EVPDA  222 (540)
Q Consensus       218 ~~~~~  222 (540)
                      .+|..
T Consensus       160 ~~N~~  164 (220)
T 2v9t_B          160 AQNPF  164 (220)
T ss_dssp             CSSCE
T ss_pred             CCCCc
Confidence            87764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.49  E-value=9.5e-14  Score=125.50  Aligned_cols=154  Identities=19%  Similarity=0.223  Sum_probs=128.6

Q ss_pred             hhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-c
Q 009194           27 LEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-S  103 (540)
Q Consensus        27 ~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~  103 (540)
                      .+.+|. .+.+++++++++++.+..++.  +..+++|++|++++|.+  ..++...|.++++|++|++++|.+..+|. .
T Consensus        19 l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   95 (208)
T 2o6s_A           19 RTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV   95 (208)
T ss_dssp             CSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence            334443 356789999999999987776  33899999999999987  56777777899999999999999998775 4


Q ss_pred             cccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCcc
Q 009194          104 LGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL  180 (540)
Q Consensus       104 l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L  180 (540)
                      +..+++|++|++++|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|..        .+.+++|
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l  167 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGI  167 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTT
T ss_pred             hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCH
Confidence            6899999999999999987 4 5689999999999999999988776 78899999999999862        2456678


Q ss_pred             ceEEccCCCcc
Q 009194          181 EELYMGNGFSG  191 (540)
Q Consensus       181 ~~L~l~~~~~~  191 (540)
                      +.|+++.+.+.
T Consensus       168 ~~L~~~~n~~~  178 (208)
T 2o6s_A          168 RYLSEWINKHS  178 (208)
T ss_dssp             HHHHHHHHHCT
T ss_pred             HHHHHHHHhCC
Confidence            88887776655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=3.3e-14  Score=141.61  Aligned_cols=183  Identities=18%  Similarity=0.211  Sum_probs=140.1

Q ss_pred             cCCCeEEEccCCCCCCC----CC--------cCCCCCccEEEcccCCCCCcc---ccHHHHhcCccCcEEEcCCCCCCC-
Q 009194           36 QKDPIAISLPHRDIQEL----PE--------RLQCPNLQLFLLYTEGNGPMQ---VSDHFFEGMEGLKVLQFPGIGSSS-   99 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l----~~--------~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~-   99 (540)
                      .+++++|+++++.+..+    |.        +..+++|++|++++|.+ ...   .....+.++++|++|++++|.+.. 
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC-CTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC-CHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            67899999999766433    22        13789999999999997 331   223345899999999999999853 


Q ss_pred             ----CCcccccC---------CCCcEEEcCCCccCC---c---ccccCCCCCCEEEecCCCCc------ccchhcCCCCC
Q 009194          100 ----LPSSLGRL---------INLQTLCLDWCELAD---I---AAIGQLKKLEILSLAYSNIN------QLPVEIGQLTR  154 (540)
Q Consensus       100 ----l~~~l~~l---------~~L~~L~l~~~~~~~---~---~~i~~l~~L~~L~l~~~~~~------~lp~~~~~l~~  154 (540)
                          ++..+..+         ++|++|++++|.+..   +   ..+..+++|++|++++|.+.      ..|..+..+++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence                34444455         899999999999873   3   46778999999999999887      34447889999


Q ss_pred             CCEEECCCCccc----cccchhhhhcCCccceEEccCCCcccccccCCCccchhhc--cCCCCccEEEeecCCCCC
Q 009194          155 LQLLDLSNCWWL----EVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVEL--ERLTELTTLEIEVPDAEI  224 (540)
Q Consensus       155 L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~  224 (540)
                      |++|++++|...    ..++.. +..+++|++|++++|.+.....    ...+..+  +++++|+.|++++|.+..
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLSARGA----AAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHHHH----HHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             ccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCCCchhhH----HHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            999999999842    556664 7899999999999998762111    1233455  448999999999998765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.47  E-value=5.5e-13  Score=121.41  Aligned_cols=148  Identities=13%  Similarity=0.112  Sum_probs=115.8

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC--cccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEe
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP--SSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSL  137 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l  137 (540)
                      ++++++++..  ..+|..+   ...+++|++++|.+..++  ..+..+++|++|++++|.++. + ..+.++++|++|++
T Consensus        14 ~~l~~s~n~l--~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQKL--NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCCc--ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            5788888876  5666533   456789999999988763  347889999999999999887 3 57889999999999


Q ss_pred             cCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEE
Q 009194          138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLE  216 (540)
Q Consensus       138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  216 (540)
                      ++|.++.++.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+...        .+..+..+++|+.|+
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTV--------APGAFDTLHSLSTLN  159 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCB--------CTTTTTTCTTCCEEE
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEE--------CHHHhcCCCCCCEEE
Confidence            99988877665 8889999999999988 5566544478889999999998877621        235677888899999


Q ss_pred             eecCCCC
Q 009194          217 IEVPDAE  223 (540)
Q Consensus       217 l~~~~~~  223 (540)
                      +++|...
T Consensus       160 L~~N~l~  166 (220)
T 2v70_A          160 LLANPFN  166 (220)
T ss_dssp             CCSCCEE
T ss_pred             ecCcCCc
Confidence            9888743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.45  E-value=7.4e-13  Score=136.96  Aligned_cols=164  Identities=16%  Similarity=0.136  Sum_probs=136.3

Q ss_pred             hhhhhhhhcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccC
Q 009194           28 EKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRL  107 (540)
Q Consensus        28 ~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l  107 (540)
                      ..+|. .+.++++.|++++|.+..+|  ..+++|++|++++|.+  ..++.  +.+  +|++|++++|.++.+|.   .+
T Consensus        72 ~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l--~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l  139 (571)
T 3cvr_A           72 SSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRL--STLPE--LPA--SLKHLDVDNNQLTMLPE---LP  139 (571)
T ss_dssp             SCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC--SCCCC--CCT--TCCEEECCSSCCSCCCC---CC
T ss_pred             CccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCC--CCcch--hhc--CCCEEECCCCcCCCCCC---cC
Confidence            33444 24578999999999999888  4689999999999987  44665  333  99999999999999887   78


Q ss_pred             CCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCcc------
Q 009194          108 INLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL------  180 (540)
Q Consensus       108 ~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L------  180 (540)
                      ++|++|++++|.++. |.   .+++|++|++++|.++.+|. +.  ++|++|++++|. +..+|.  +..  +|      
T Consensus       140 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~  208 (571)
T 3cvr_A          140 ALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEET  208 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------C
T ss_pred             ccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhccccc
Confidence            999999999999988 44   67899999999999999998 66  999999999998 668876  333  66      


Q ss_pred             -ceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194          181 -EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       181 -~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                       +.|++++|.+.         ..+..+..+++|+.|++++|.+.
T Consensus       209 L~~L~Ls~N~l~---------~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          209 EIFFRCRENRIT---------HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CEEEECCSSCCC---------CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             ceEEecCCCcce---------ecCHHHhcCCCCCEEEeeCCcCC
Confidence             99999999887         34556777999999999999965

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=2.2e-13  Score=118.54  Aligned_cols=107  Identities=24%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             hcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccc--hhcCCCCCCCE
Q 009194           82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQL  157 (540)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~  157 (540)
                      ..+++|++|++++|.+..+ ..+..+++|++|++++|.++.  +..+.++++|++|++++|.++.+|  ..+..+++|++
T Consensus        46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred             HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence            3444555555555544444 334445555555555555443  233334555555555555555443  34555555555


Q ss_pred             EECCCCccccccch---hhhhcCCccceEEccCCCc
Q 009194          158 LDLSNCWWLEVIAP---NVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       158 L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~  190 (540)
                      |++++|. +..++.   ..+..+++|+.|++++|..
T Consensus       125 L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          125 LDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            5555554 333333   2245555555555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.43  E-value=1.6e-12  Score=119.24  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=99.0

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEec
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA  138 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~  138 (540)
                      +.++.+++..  ..+|..+   .++|++|++++|.+..+ |..+..+++|++|++++|.++. + ..+..+++|++|+++
T Consensus        22 ~~v~c~~~~l--~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           22 TTVDCRSKRH--ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEeEccCCCc--CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            4566666654  5555432   46777777777777765 5566777777777777777766 3 456777777777777


Q ss_pred             CCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEe
Q 009194          139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI  217 (540)
Q Consensus       139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  217 (540)
                      +|.++.+|.. +..+++|++|++++|. +..+|.. +..+++|+.|++++|.+...        ....+..+++|+.|++
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSI--------PHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCC--------CTTTTTTCTTCCEEEC
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCcc--------CHHHHhCCCCCCEEEe
Confidence            7777766655 5677777777777776 5567665 57777777777777766511        1134566677777777


Q ss_pred             ecCCCC
Q 009194          218 EVPDAE  223 (540)
Q Consensus       218 ~~~~~~  223 (540)
                      .+|...
T Consensus       167 ~~N~~~  172 (229)
T 3e6j_A          167 FGNPWD  172 (229)
T ss_dssp             TTSCBC
T ss_pred             eCCCcc
Confidence            776643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.42  E-value=4.3e-13  Score=114.11  Aligned_cols=106  Identities=24%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             ccCcEEEcCCCCCC--CCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcc-cchhcCCCCCCCEEECC
Q 009194           85 EGLKVLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQ-LPVEIGQLTRLQLLDLS  161 (540)
Q Consensus        85 ~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~  161 (540)
                      ++|++|++++|.+.  .+|..+..+++|++|++++|.++....++++++|++|++++|.+.. +|..+..+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            45555555555554  4555555555555555555555444445555555555555555554 44444455555555555


Q ss_pred             CCccccccc-hhhhhcCCccceEEccCCCcc
Q 009194          162 NCWWLEVIA-PNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       162 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      +|. +..++ ...++.+++|++|++++|.+.
T Consensus        97 ~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           97 GNK-IKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             TSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             CCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            555 33332 112455555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=4.1e-13  Score=143.98  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=98.9

Q ss_pred             hcCCCeEEEccCCCCCCCCCcC-CCCCccEEEcccCCCC--CccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCc
Q 009194           35 IQKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNG--PMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ  111 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~  111 (540)
                      ..+.++++++..+.+...+... ....|+.+.+.+....  ....+.+.|..++.|++|++++|.+..+|..+.++++|+
T Consensus       171 s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~  250 (727)
T 4b8c_D          171 STPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT  250 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred             cCCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence            3456889999888876654432 4444444443332210  112445567889999999999999999998888999999


Q ss_pred             EEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCc
Q 009194          112 TLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       112 ~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (540)
                      +|++++|.++. |..++++++|++|++++|.++.+|..++.+++|++|++++|. +..+|.. ++.+++|+.|++++|.+
T Consensus       251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred             EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCcc
Confidence            99999999888 788999999999999999999999999999999999999987 6788887 89999999999999987


Q ss_pred             c
Q 009194          191 G  191 (540)
Q Consensus       191 ~  191 (540)
                      .
T Consensus       329 ~  329 (727)
T 4b8c_D          329 E  329 (727)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=1.8e-15  Score=157.24  Aligned_cols=109  Identities=21%  Similarity=0.259  Sum_probs=74.0

Q ss_pred             CCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCC
Q 009194          109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG  188 (540)
Q Consensus       109 ~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (540)
                      .|++|++++|.++.++.++++++|++|++++|.++.+|..++.+++|++|++++|. +..+| . ++.+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cCCCCCCcEEECCCC
Confidence            46777777777766223777777777777777777777777777777777777776 55566 3 677777777777777


Q ss_pred             CcccccccCCCccchhhccCCCCccEEEeecCCCCCCCc
Q 009194          189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPP  227 (540)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  227 (540)
                      .+....       .+..++.+++|+.|++++|.+...+.
T Consensus       519 ~l~~~~-------~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          519 RLQQSA-------AIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CCCSSS-------TTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCC-------CcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            665110       04556677777777777777655544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=4.3e-13  Score=114.13  Aligned_cols=120  Identities=20%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             CCCeEEEccCCCCC--CCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-CCcccccCCCCcE
Q 009194           37 KDPIAISLPHRDIQ--ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQT  112 (540)
Q Consensus        37 ~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~L~~  112 (540)
                      ++++++++++|.+.  .++... .+++|+.|++++|.+  ..+  ..+.++++|++|++++|.+.. +|..+..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            45666666666654  444432 555555555555544  222  223445555555555555544 4444444555555


Q ss_pred             EEcCCCccCC-c--ccccCCCCCCEEEecCCCCcccch----hcCCCCCCCEEEC
Q 009194          113 LCLDWCELAD-I--AAIGQLKKLEILSLAYSNINQLPV----EIGQLTRLQLLDL  160 (540)
Q Consensus       113 L~l~~~~~~~-~--~~i~~l~~L~~L~l~~~~~~~lp~----~~~~l~~L~~L~l  160 (540)
                      |++++|.++. +  ..++.+++|++|++++|.++.+|.    .+..+++|++|++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            5555555444 2  444445555555555544444433    2444444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=6.9e-13  Score=116.28  Aligned_cols=132  Identities=15%  Similarity=0.066  Sum_probs=79.6

Q ss_pred             CcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-c-ccccCCCC
Q 009194           54 ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKK  131 (540)
Q Consensus        54 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~  131 (540)
                      ....+.+|+.|++++|.+  ..++. +....++|++|++++|.+..+ ..+..+++|++|++++|.++. + ..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            344566677777777765  23332 222233677777777766655 446666677777777776665 3 33366667


Q ss_pred             CCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccchh---hhhcCCccceEEccCCCc
Q 009194          132 LEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAPN---VISKLSQLEELYMGNGFS  190 (540)
Q Consensus       132 L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~  190 (540)
                      |++|++++|.+..+|.  .+..+++|++|++++|. +..+|..   +++.+++|+.|+++.+..
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            7777777776666665  56666667777776666 4444443   355666666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.36  E-value=1.5e-12  Score=114.21  Aligned_cols=125  Identities=15%  Similarity=0.119  Sum_probs=67.8

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCC-CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCccc-ccCCCCcEE
Q 009194           36 QKDPIAISLPHRDIQELPERLQCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTL  113 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l-~~l~~L~~L  113 (540)
                      ..+++++++++|.+..++....+. +|+.|++++|.+  ..+  ..+.++++|++|++++|.+..+|..+ ..+++|++|
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Ccc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            344566666666555554444333 566666666554  222  12355556666666666655554333 555666666


Q ss_pred             EcCCCccCC-cc--cccCCCCCCEEEecCCCCcccchh----cCCCCCCCEEECCCCc
Q 009194          114 CLDWCELAD-IA--AIGQLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNCW  164 (540)
Q Consensus       114 ~l~~~~~~~-~~--~i~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~~  164 (540)
                      ++++|.++. +.  .+..+++|++|++++|.+..+|..    +..+++|++|+++++.
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            666665554 32  455566666666666655555543    5555666666655554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.34  E-value=9.2e-12  Score=110.68  Aligned_cols=121  Identities=20%  Similarity=0.268  Sum_probs=69.0

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~  118 (540)
                      +.++++++.+..+|... .+++++|++++|.+  ..++. .|.++++|++|++++|.++.++ ..+.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35666666666665432 24566666666654  34442 3456666666666666665543 34556666666666666


Q ss_pred             ccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCc
Q 009194          119 ELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW  164 (540)
Q Consensus       119 ~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~  164 (540)
                      .++.  +..+.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            6554  24555666666666666666555543 5556666666665554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=4.9e-12  Score=112.46  Aligned_cols=123  Identities=19%  Similarity=0.253  Sum_probs=75.3

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccH-HHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSD-HFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDW  117 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~  117 (540)
                      +.++++++.+..+|... ..++++|++++|.+  ..++. .+|.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCC-CCCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56677777666666533 22666777777665  33332 2346666677777766666654 45566666666666666


Q ss_pred             CccCC--cccccCCCCCCEEEecCCCCccc-chhcCCCCCCCEEECCCCcc
Q 009194          118 CELAD--IAAIGQLKKLEILSLAYSNINQL-PVEIGQLTRLQLLDLSNCWW  165 (540)
Q Consensus       118 ~~~~~--~~~i~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~  165 (540)
                      |.++.  +..+.++++|++|++++|.++.+ |..+..+++|++|++++|..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            66665  24466666666666666666643 44466666666666666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=8.9e-12  Score=110.78  Aligned_cols=124  Identities=18%  Similarity=0.196  Sum_probs=106.6

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcc--cccCCCCcEEEcCCCccCC--cccccCCCCCCEEEe
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSS--LGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL  137 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~--l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l  137 (540)
                      ++++++++.+  ..+|..+   ..++++|++++|.+..++..  ++.+++|++|++++|.++.  +..+.++++|++|++
T Consensus        11 ~~l~~s~~~l--~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCc--CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence            7899999886  6777644   34899999999999987753  8999999999999999987  588999999999999


Q ss_pred             cCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      ++|.++.++.. +..+++|++|++++|. +..++...++.+++|+.|++++|.+.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            99999977665 8899999999999998 55554444899999999999999876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=1.2e-12  Score=140.44  Aligned_cols=131  Identities=21%  Similarity=0.221  Sum_probs=111.2

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEE
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL  135 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L  135 (540)
                      .+++|+.|++++|.+  ..++..++ ++++|++|++++|.+..+|..++++++|++|++++|.++. |..++++++|++|
T Consensus       222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred             cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence            789999999999997  57777765 8999999999999999999999999999999999999988 8899999999999


Q ss_pred             EecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCC-ccceEEccCCCcc
Q 009194          136 SLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS-QLEELYMGNGFSG  191 (540)
Q Consensus       136 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~  191 (540)
                      ++++|.+..+|..++.+++|++|++++|.....+|.. +..+. .+..+++.+|.+.
T Consensus       299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~  354 (727)
T 4b8c_D          299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPE  354 (727)
T ss_dssp             ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCC
T ss_pred             ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCccc
Confidence            9999999999999999999999999999844444443 44432 2223556666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=2e-11  Score=108.43  Aligned_cols=124  Identities=19%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecC
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAY  139 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~  139 (540)
                      ++++++++.+  ..+|..+   .++|++|++++|.++.+|..+.++++|++|++++|.++.  +..+.++++|++|++++
T Consensus        13 ~~l~~~~~~l--~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGL--KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCC--SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCC--CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            4566776664  5555433   356777777777777777777777777777777777766  35677777777777777


Q ss_pred             CCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          140 SNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       140 ~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      |.++.++. .+..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence            77776654 36777777777777776 55666655666777777777766543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=3.4e-11  Score=105.52  Aligned_cols=124  Identities=20%  Similarity=0.272  Sum_probs=83.6

Q ss_pred             CeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCC
Q 009194           39 PIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDW  117 (540)
Q Consensus        39 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~  117 (540)
                      .+.++++++.+..+|.. ..++|++|++++|.+  ..++...|.++++|++|++++|.+..+|. .+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            35677777777666643 235777777777775  45555555677777777777777776654 346777777777777


Q ss_pred             CccCC-c-ccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcc
Q 009194          118 CELAD-I-AAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWW  165 (540)
Q Consensus       118 ~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~  165 (540)
                      |.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|..
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            77766 3 4466777777777777777766665 36677777777777663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=4.9e-13  Score=119.72  Aligned_cols=108  Identities=22%  Similarity=0.261  Sum_probs=65.5

Q ss_pred             HhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEE
Q 009194           81 FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLD  159 (540)
Q Consensus        81 ~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~  159 (540)
                      +.++++|++|++++|.+..+| .+..+++|++|++++|.++. |..+..+++|++|++++|.++.+| .+..+++|++|+
T Consensus        44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred             HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence            456666666666666666665 56666666666666666655 455555566666666666666655 456666666666


Q ss_pred             CCCCccccccch-hhhhcCCccceEEccCCCcc
Q 009194          160 LSNCWWLEVIAP-NVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       160 l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~  191 (540)
                      +++|. +..++. ..+..+++|+.|++++|.+.
T Consensus       122 l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          122 MSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence            66655 444332 22566666666666666543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.23  E-value=4.3e-11  Score=124.34  Aligned_cols=123  Identities=21%  Similarity=0.201  Sum_probs=104.9

Q ss_pred             cCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCc
Q 009194           86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW  164 (540)
Q Consensus        86 ~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~  164 (540)
                      .|++|++++|.++.+|. ++.+++|++|++++|.++. |..++++++|++|++++|.++.+| .++.+++|++|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence            58899999999999997 9999999999999999998 899999999999999999999998 89999999999999998


Q ss_pred             ccccc--chhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEe
Q 009194          165 WLEVI--APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI  217 (540)
Q Consensus       165 ~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  217 (540)
                       +..+  |.. ++.+++|+.|++++|.+.....     .....+..+++|+.|++
T Consensus       520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG-----IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS-----CTTHHHHHCTTCSEEEC
T ss_pred             -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc-----HHHHHHHHCcccCccCC
Confidence             6666  555 8999999999999998762211     11122345788888864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=1.2e-10  Score=102.00  Aligned_cols=124  Identities=21%  Similarity=0.291  Sum_probs=76.6

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEec
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA  138 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~  138 (540)
                      +.+.++++..  ..++..   ..++|++|++++|.+..++. .++.+++|++|++++|.++. + ..+..+++|++|+++
T Consensus        10 ~~l~~~~~~l--~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A           10 TEIRCNSKGL--TSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TEEECCSSCC--SSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEecCCCC--ccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4566666654  444432   23566777777776666554 34666777777777776665 3 445667777777777


Q ss_pred             CCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          139 YSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      +|.++.+|.. +..+++|++|++++|. +..++...+..+++|+.|++++|.+.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence            7766665554 4666677777776665 45565554556666666666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=1.4e-12  Score=116.65  Aligned_cols=142  Identities=18%  Similarity=0.225  Sum_probs=113.7

Q ss_pred             CeEEEccCC--CCCCCCC-cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           39 PIAISLPHR--DIQELPE-RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        39 l~~l~l~~~--~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      ++...+.+.  .++.++. +..+++|++|++++|.+  ..++  .+.++++|++|++++|.+..+|..+..+++|++|++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l--~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L  100 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE--SCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC--cccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence            455555543  3344544 33889999999999986  4466  358999999999999999999988888899999999


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccc---------hhhhhcCCccceEE
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIA---------PNVISKLSQLEELY  184 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~l~~L~~L~  184 (540)
                      ++|.++.++.+.++++|++|++++|.++.++.  .+..+++|++|++++|......|         ...+..+++|+.|+
T Consensus       101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            99999985478899999999999999997765  68999999999999997433322         23367788888886

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=3.3e-10  Score=98.67  Aligned_cols=100  Identities=22%  Similarity=0.357  Sum_probs=50.8

Q ss_pred             cEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCc
Q 009194           88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCW  164 (540)
Q Consensus        88 ~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~  164 (540)
                      +.++++++.+..+|..+.  ++|++|++++|.++.  +..+.++++|++|++++|.++.+|.. +.++++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            345555555555554332  455555555555544  24455555555555555555555444 3455555555555554


Q ss_pred             cccccchhhhhcCCccceEEccCCCc
Q 009194          165 WLEVIAPNVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (540)
                       +..++...++.+++|+.|++++|.+
T Consensus        93 -l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           93 -LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             -CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             -cceeCHHHhccccCCCEEEeCCCCc
Confidence             4444443344555555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.12  E-value=3.7e-10  Score=98.05  Aligned_cols=101  Identities=22%  Similarity=0.301  Sum_probs=56.6

Q ss_pred             CcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCC
Q 009194           87 LKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNC  163 (540)
Q Consensus        87 L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~  163 (540)
                      .++++++++.+..+|..+  .++|++|++++|.++.  +..+.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            345556665555555543  2556666666666554  34555666666666666666555544 355666666666665


Q ss_pred             ccccccchhhhhcCCccceEEccCCCc
Q 009194          164 WWLEVIAPNVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       164 ~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (540)
                      . +..++...++.+++|+.|++++|.+
T Consensus        89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           89 Q-LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             c-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            5 4455544455555556665555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.08  E-value=2.2e-10  Score=111.12  Aligned_cols=179  Identities=16%  Similarity=0.150  Sum_probs=105.7

Q ss_pred             cCCCeEEEccCCCCC--------------------CCCCcC--C--------CCCccEEEcccCCCCCccccHHHHhcCc
Q 009194           36 QKDPIAISLPHRDIQ--------------------ELPERL--Q--------CPNLQLFLLYTEGNGPMQVSDHFFEGME   85 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~~l~   85 (540)
                      .++++.|++++|.+.                    .++...  +        |++|+.+.+.+ .  ...+....|.+|+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~--i~~I~~~aF~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K--IKNIEDAAFKGCD  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T--CCEECTTTTTTCT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c--ccchhHHHhhcCc
Confidence            678999999988876                    233322  5        77888888877 3  3566667777888


Q ss_pred             cCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCcc----CC--ccccc-------------------------------
Q 009194           86 GLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCEL----AD--IAAIG-------------------------------  127 (540)
Q Consensus        86 ~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~----~~--~~~i~-------------------------------  127 (540)
                      +|+.+++.++.+..++ ..+..+.++.++.......    ..  ...+.                               
T Consensus       125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred             ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence            8888888877765543 3455666666665544110    00  00010                               


Q ss_pred             -------------------CCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccc-eEEcc
Q 009194          128 -------------------QLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE-ELYMG  186 (540)
Q Consensus       128 -------------------~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~  186 (540)
                                         .+++|+.+++++|.++.+|.. +.++++|+.+++.++  +..++..++..+.+|+ .+.+.
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEEC
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEc
Confidence                               155666666666666666554 566666666666654  4556665566666666 66665


Q ss_pred             CCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcc
Q 009194          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD  228 (540)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  228 (540)
                      . .+..        -....|.++++|+.+++..+.+..++..
T Consensus       283 ~-~l~~--------I~~~aF~~c~~L~~l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          283 A-SVTA--------IEFGAFMGCDNLRYVLATGDKITTLGDE  315 (329)
T ss_dssp             T-TCCE--------ECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred             c-cceE--------EchhhhhCCccCCEEEeCCCccCccchh
Confidence            5 2221        1123456666666666666665555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.01  E-value=1.8e-09  Score=93.94  Aligned_cols=98  Identities=20%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEec
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA  138 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~  138 (540)
                      +.++++++..  ..+|..+   .++|++|++++|.+..+ |..+.++++|++|++++|.++. + ..+.++++|++|+++
T Consensus        15 ~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            4555555554  4444432   26667777777777665 4456777777777777777766 4 345677777777777


Q ss_pred             CCCCcccchh-cCCCCCCCEEECCCCc
Q 009194          139 YSNINQLPVE-IGQLTRLQLLDLSNCW  164 (540)
Q Consensus       139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~  164 (540)
                      +|.++.+|.. +..+++|++|++++|.
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCC
Confidence            7777777665 6777777777777776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=1.9e-09  Score=104.54  Aligned_cols=92  Identities=15%  Similarity=0.066  Sum_probs=65.8

Q ss_pred             CCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCC-eEEEeeCCCCccccCh
Q 009194          309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLR-IINVDSCRKLKYLFSF  387 (540)
Q Consensus       309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~  387 (540)
                      .+++|+.+++.++ +++.++..    ....+++|+.+.+.+  +++.++...   +..+++|+ .+.+.+  +++.++. 
T Consensus       224 ~~~~L~~l~L~~n-~i~~I~~~----aF~~~~~L~~l~l~~--ni~~I~~~a---F~~~~~L~~~l~l~~--~l~~I~~-  290 (329)
T 3sb4_A          224 YMPNLVSLDISKT-NATTIPDF----TFAQKKYLLKIKLPH--NLKTIGQRV---FSNCGRLAGTLELPA--SVTAIEF-  290 (329)
T ss_dssp             HCTTCCEEECTTB-CCCEECTT----TTTTCTTCCEEECCT--TCCEECTTT---TTTCTTCCEEEEECT--TCCEECT-
T ss_pred             hcCCCeEEECCCC-CcceecHh----hhhCCCCCCEEECCc--ccceehHHH---hhCChhccEEEEEcc--cceEEch-
Confidence            3678888888876 46666443    556778888888876  377766554   66788888 888876  6777744 


Q ss_pred             HHHhhcccccEEEEccccccccccccC
Q 009194          388 SMAKNLLRLQKVKVEDCDDLKMIIGPD  414 (540)
Q Consensus       388 ~~~~~l~~L~~L~l~~c~~l~~~~~~~  414 (540)
                      ..+.++++|+.+++.+ ++++.++...
T Consensus       291 ~aF~~c~~L~~l~l~~-n~i~~I~~~a  316 (329)
T 3sb4_A          291 GAFMGCDNLRYVLATG-DKITTLGDEL  316 (329)
T ss_dssp             TTTTTCTTEEEEEECS-SCCCEECTTT
T ss_pred             hhhhCCccCCEEEeCC-CccCccchhh
Confidence            4467888899998876 5676665333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.98  E-value=2.9e-09  Score=92.30  Aligned_cols=98  Identities=22%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEec
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLA  138 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~  138 (540)
                      +.++++++..  ..+|..+   .++|++|++++|.+..+ |..+..+++|++|++++|.++. + ..+.++++|++|+++
T Consensus        12 ~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           12 TTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4455555553  3444322   35666677777776665 4456677777777777777666 3 445677777777777


Q ss_pred             CCCCcccchh-cCCCCCCCEEECCCCc
Q 009194          139 YSNINQLPVE-IGQLTRLQLLDLSNCW  164 (540)
Q Consensus       139 ~~~~~~lp~~-~~~l~~L~~L~l~~~~  164 (540)
                      +|.++.+|.. +..+++|++|++++|.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            7777766654 6777777777777776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.91  E-value=4.2e-10  Score=110.60  Aligned_cols=159  Identities=15%  Similarity=0.097  Sum_probs=84.5

Q ss_pred             CCccEEEcccCCCCCccccHHH---Hh-cCccCcEEEcCCCCCCC--CCcccccCCCCcEEEcCCCccCC--cccc----
Q 009194           59 PNLQLFLLYTEGNGPMQVSDHF---FE-GMEGLKVLQFPGIGSSS--LPSSLGRLINLQTLCLDWCELAD--IAAI----  126 (540)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~---~~-~l~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~--~~~i----  126 (540)
                      +.|++|++++|.+ .......+   +. ..++|++|++++|.+..  +......+++|++|++++|.+++  ...+    
T Consensus        72 ~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCC-CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCC-CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4566666666665 22111111   11 12566677777666642  11112334566777777776654  2322    


Q ss_pred             -cCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCccccccc----hhhhhcCCccceEEccCCCccccccc
Q 009194          127 -GQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIA----PNVISKLSQLEELYMGNGFSGWEKVE  196 (540)
Q Consensus       127 -~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~  196 (540)
                       ...++|++|++++|.++     .++..+..+++|++|++++|. ++...    ...+...++|+.|++++|.+..... 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence             23566777777777665     244445666677777777766 33221    1124556677777777776541111 


Q ss_pred             CCCccchhhccCCCCccEEEeecCCCC
Q 009194          197 GGSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                         ......+...++|++|++++|.++
T Consensus       229 ---~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          229 ---LALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             ---HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             ---HHHHHHHHhCCCCCEEeccCCCCC
Confidence               122334455667777777777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.83  E-value=6.3e-10  Score=109.37  Aligned_cols=156  Identities=14%  Similarity=0.031  Sum_probs=117.6

Q ss_pred             hhcCCCeEEEccCCCCCCC-----CCcC--CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-----CC
Q 009194           34 TIQKDPIAISLPHRDIQEL-----PERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-----LP  101 (540)
Q Consensus        34 ~~~~~l~~l~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----l~  101 (540)
                      .+.+.++.+++++|.+...     ....  ..++|++|++++|.+ .......++..+++|++|++++|.++.     +.
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQL-DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCC-CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCC-CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            4567899999999998432     2211  347999999999987 444444455567899999999999864     22


Q ss_pred             ccc-ccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCcccccc
Q 009194          102 SSL-GRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVI  169 (540)
Q Consensus       102 ~~l-~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~  169 (540)
                      ..+ ...++|++|++++|.+++  .    ..+..+++|++|++++|.+.     .++..+...++|++|++++|. ++..
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~  226 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDT  226 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHH
Confidence            223 356889999999999864  2    45578999999999999887     345667888999999999998 4432


Q ss_pred             chh----hhhcCCccceEEccCCCcc
Q 009194          170 APN----VISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       170 ~~~----~l~~l~~L~~L~l~~~~~~  191 (540)
                      ...    .+...++|++|++++|.+.
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            221    1456789999999999876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.83  E-value=3.7e-07  Score=90.51  Aligned_cols=264  Identities=14%  Similarity=0.127  Sum_probs=142.8

Q ss_pred             CCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCE
Q 009194           58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEI  134 (540)
Q Consensus        58 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~  134 (540)
                      +..++.+.+...   ...+....|.++ +|+.+.+..+ +..++. ++.++ +|+.+.+.. .++.  ...+.++.+|+.
T Consensus       112 ~~~l~~i~ip~~---i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          112 LKGYNEIILPNS---VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             CSSCSEEECCTT---CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             cCCccEEEECCc---cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            455666666554   245555556664 5777777655 444432 34443 577777765 4443  366777777888


Q ss_pred             EEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccE
Q 009194          135 LSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTT  214 (540)
Q Consensus       135 L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  214 (540)
                      +++..+.++.+|...-...+|+.+.+..+  +..++..++..+++|+.+.+..+...         -....+.+ .+|+.
T Consensus       185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~---------I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVST---------IGQEAFRE-SGITT  252 (401)
T ss_dssp             EECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCE---------ECTTTTTT-CCCSE
T ss_pred             eecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccC---------cccccccc-CCccE
Confidence            88777777777766444677777777643  56666666777777777776653211         01122333 45666


Q ss_pred             EEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccc
Q 009194          215 LEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETL  294 (540)
Q Consensus       215 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (540)
                      +.+. +....++...                       ...+++|+.+.+.+    ....                   .
T Consensus       253 i~lp-~~i~~I~~~a-----------------------F~~c~~L~~l~l~~----~~~~-------------------~  285 (401)
T 4fdw_A          253 VKLP-NGVTNIASRA-----------------------FYYCPELAEVTTYG----STFN-------------------D  285 (401)
T ss_dssp             EEEE-TTCCEECTTT-----------------------TTTCTTCCEEEEES----SCCC-------------------C
T ss_pred             EEeC-CCccEEChhH-----------------------hhCCCCCCEEEeCC----cccc-------------------C
Confidence            6552 2222222211                       22445555555543    1100                   0


Q ss_pred             cCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEE
Q 009194          295 EGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIIN  374 (540)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~  374 (540)
                      .....+ ... .+.++++|+.+.+.+  +++.+...    ....+++|+.+.|.+  +++.+....   +..+ +|+.+.
T Consensus       286 ~~~~~I-~~~-aF~~c~~L~~l~l~~--~i~~I~~~----aF~~c~~L~~l~lp~--~l~~I~~~a---F~~~-~L~~l~  351 (401)
T 4fdw_A          286 DPEAMI-HPY-CLEGCPKLARFEIPE--SIRILGQG----LLGGNRKVTQLTIPA--NVTQINFSA---FNNT-GIKEVK  351 (401)
T ss_dssp             CTTCEE-CTT-TTTTCTTCCEECCCT--TCCEECTT----TTTTCCSCCEEEECT--TCCEECTTS---SSSS-CCCEEE
T ss_pred             CcccEE-CHH-HhhCCccCCeEEeCC--ceEEEhhh----hhcCCCCccEEEECc--cccEEcHHh---CCCC-CCCEEE
Confidence            000001 001 155677777777763  45655332    445567777777743  466655444   4456 788888


Q ss_pred             EeeCCCCccccChHHHhhc-ccccEEEEcc
Q 009194          375 VDSCRKLKYLFSFSMAKNL-LRLQKVKVED  403 (540)
Q Consensus       375 l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~  403 (540)
                      +.+. .+..++.. ....+ .+++.|.+-.
T Consensus       352 l~~n-~~~~l~~~-~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          352 VEGT-TPPQVFEK-VWYGFPDDITVIRVPA  379 (401)
T ss_dssp             ECCS-SCCBCCCS-SCCCSCTTCCEEEECG
T ss_pred             EcCC-CCcccccc-cccCCCCCccEEEeCH
Confidence            8764 44444332 22334 3567776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.82  E-value=2e-09  Score=92.03  Aligned_cols=66  Identities=8%  Similarity=0.145  Sum_probs=35.6

Q ss_pred             ccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHh---hcccccEEEEccccccccc
Q 009194          341 LLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK---NLLRLQKVKVEDCDDLKMI  410 (540)
Q Consensus       341 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~l~~c~~l~~~  410 (540)
                      .|+.|++++|. +++.....   ...+++|++|.+++|..+++........   ..++|++|++++|+++++.
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~---L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDH---MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGG---GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             eEeEEeCcCCC-ccHHHHHH---hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            45666666654 44443332   3456666666666666666542222111   1245666666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.78  E-value=3.3e-09  Score=90.76  Aligned_cols=92  Identities=18%  Similarity=0.239  Sum_probs=70.2

Q ss_pred             ccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhh---hcCCC
Q 009194          394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVN---SLGQL  470 (540)
Q Consensus       394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~---~l~~L  470 (540)
                      ..|++|++++|. +++.+.                       ..+..+++|++|++++|..+++.+...+.+   .+++|
T Consensus        61 ~~L~~LDLs~~~-Itd~GL-----------------------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L  116 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGF-----------------------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM  116 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGG-----------------------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHC
T ss_pred             ceEeEEeCcCCC-ccHHHH-----------------------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCC
Confidence            379999999997 776531                       123457999999999999999975544433   24689


Q ss_pred             cEEEEecccccceeccccccCCCCccccccccceeecccCCCCCCC
Q 009194          471 QHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSF  516 (540)
Q Consensus       471 ~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~L~~~  516 (540)
                      ++|++++|+++++..    +..   +..+++|++|.+++||.++..
T Consensus       117 ~~L~Ls~C~~ITD~G----l~~---L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          117 LEMEIISCGNVTDKG----IIA---LHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CEEEEESCTTCCHHH----HHH---GGGCTTCCEEEEESCTTCCCH
T ss_pred             CEEEcCCCCcCCHHH----HHH---HhcCCCCCEEECCCCCCCCch
Confidence            999999999998843    222   346899999999999998853

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.72  E-value=3.8e-08  Score=96.10  Aligned_cols=97  Identities=22%  Similarity=0.128  Sum_probs=55.8

Q ss_pred             EEcccC-CCCCccccHHHHhcCccCcEEEcCC-CCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEec
Q 009194           64 FLLYTE-GNGPMQVSDHFFEGMEGLKVLQFPG-IGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLA  138 (540)
Q Consensus        64 L~l~~~-~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~  138 (540)
                      ++.+++ ..  ..+|.  +..+.+|++|++++ |.+..+| ..++.+++|++|+|++|.++.  +..|.++++|++|+++
T Consensus        13 v~~~~~n~l--~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           13 LRCTRDGAL--DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             EECCSSCCC--TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEcCCCCCC--CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            445544 32  44554  45666666666664 6666554 345666666666666666655  2455666666666666


Q ss_pred             CCCCcccchhcCCCCCCCEEECCCCc
Q 009194          139 YSNINQLPVEIGQLTRLQLLDLSNCW  164 (540)
Q Consensus       139 ~~~~~~lp~~~~~l~~L~~L~l~~~~  164 (540)
                      +|.++.+|..+.....|++|++.+|.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCC
Confidence            66666665543332236666666655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.68  E-value=6.4e-07  Score=88.94  Aligned_cols=309  Identities=12%  Similarity=0.095  Sum_probs=161.3

Q ss_pred             CCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cc
Q 009194           50 QELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IA  124 (540)
Q Consensus        50 ~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~  124 (540)
                      ..+..  +.+|.+|+++.+..+   ...+....|.+|.+|+.+++..+ +..++ ..+.++.+|+.+.+..+- ..  ..
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~---i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~  134 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST---VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVE  134 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTT
T ss_pred             eEhHHHHhhCCCCceEEEeCCC---ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecce
Confidence            34444  348899999999754   36677777899999999999754 44443 356778888877665432 22  24


Q ss_pred             cccCCCCCCEEEecCCCCcccc-hhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccch
Q 009194          125 AIGQLKKLEILSLAYSNINQLP-VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASL  203 (540)
Q Consensus       125 ~i~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  203 (540)
                      .+.++..+......  ....+. ..+..+++|+.+.+..+  ...++...+..+.+|+.+.+..+...         -..
T Consensus       135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~---------I~~  201 (394)
T 4fs7_A          135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI---------IRD  201 (394)
T ss_dssp             TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE---------ECT
T ss_pred             eeecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE---------eCc
Confidence            45555433332222  122222 34677888888888653  34566666777888887777554211         112


Q ss_pred             hhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhh
Q 009194          204 VELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLL  283 (540)
Q Consensus       204 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  283 (540)
                      ..+.++..|+.+.+..+....-.......+|+.+.+....  ..-.......+..++.+.+...  ...+  ........
T Consensus       202 ~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~--~~~i--~~~~F~~~  275 (394)
T 4fs7_A          202 YCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSF--TELGKSVFYGCTDLESISIQNN--KLRI--GGSLFYNC  275 (394)
T ss_dssp             TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTC--CEECSSTTTTCSSCCEEEECCT--TCEE--CSCTTTTC
T ss_pred             hhhccccccceeecCCCceEeehhhcccCCCceEEECCCc--eecccccccccccceeEEcCCC--ccee--eccccccc
Confidence            3345566666555543321111111112566666552111  0000001234555666665431  1111  11111122


Q ss_pred             cccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCC
Q 009194          284 QRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLRE  363 (540)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  363 (540)
                      ..++........    . ... .+..+.+|+.+.+..  +++.+...    ....+.+|+.+.|.+  .++.+....   
T Consensus       276 ~~l~~~~~~~~~----i-~~~-~F~~~~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~a---  338 (394)
T 4fs7_A          276 SGLKKVIYGSVI----V-PEK-TFYGCSSLTEVKLLD--SVKFIGEE----AFESCTSLVSIDLPY--LVEEIGKRS---  338 (394)
T ss_dssp             TTCCEEEECSSE----E-CTT-TTTTCTTCCEEEECT--TCCEECTT----TTTTCTTCCEECCCT--TCCEECTTT---
T ss_pred             cccceeccCcee----e-ccc-ccccccccccccccc--ccceechh----hhcCCCCCCEEEeCC--cccEEhHHh---
Confidence            334443332211    0 111 144566777777743  35555322    345566777777743  355554433   


Q ss_pred             CCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEc
Q 009194          364 DQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVE  402 (540)
Q Consensus       364 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~  402 (540)
                      +..+.+|+.+.+..  +++.+.. ..+.++++|+++.+.
T Consensus       339 F~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          339 FRGCTSLSNINFPL--SLRKIGA-NAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTCTTCCEECCCT--TCCEECT-TTBTTCTTCCEEEEE
T ss_pred             ccCCCCCCEEEECc--cccEehH-HHhhCCCCCCEEEEC
Confidence            45567777777753  3665533 334667777777764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.65  E-value=4.1e-07  Score=90.19  Aligned_cols=212  Identities=12%  Similarity=0.107  Sum_probs=130.5

Q ss_pred             CCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEE
Q 009194           37 KDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTL  113 (540)
Q Consensus        37 ~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L  113 (540)
                      .+++.+.+.. .+..++.  +.+|++|+.+.+..+..  ..++...|. +..|+.+.+..+ +..++ ..+.++++|+.+
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l--~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l  231 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI--TKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI  231 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC--SEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc--eEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence            3577888875 5666654  33889999999988775  667776676 578888888744 55544 456788888888


Q ss_pred             EcCCCccCC--cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCcc----ccccchhhhhcCCccceEEcc
Q 009194          114 CLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWW----LEVIAPNVISKLSQLEELYMG  186 (540)
Q Consensus       114 ~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~----~~~~~~~~l~~l~~L~~L~l~  186 (540)
                      .+..+ ++.  ...+.+ .+|+.+.+.. .++.++. .+.++++|+.+.+.++..    ...++...+..|++|+.+.+.
T Consensus       232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          232 EIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             ECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             ecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            88764 333  245555 6788887743 4555544 377788888888766541    124666667778888888776


Q ss_pred             CCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEe
Q 009194          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK  265 (540)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  265 (540)
                      .+ +..        -....+.++.+|+.+.+..+ ...+...... .+|+.+.+.....+.............++.+.+-
T Consensus       309 ~~-i~~--------I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          309 ES-IRI--------LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             TT-CCE--------ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             Cc-eEE--------EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence            43 221        11245667777888777433 4444443322 4677777755443332221112222366777765


Q ss_pred             c
Q 009194          266 G  266 (540)
Q Consensus       266 ~  266 (540)
                      .
T Consensus       379 ~  379 (401)
T 4fdw_A          379 A  379 (401)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.61  E-value=6.8e-08  Score=94.05  Aligned_cols=182  Identities=16%  Similarity=0.149  Sum_probs=106.0

Q ss_pred             cCCCeEEEccCCCCCC---------CCCcC-CCCCccEEEcccCCCCC-------ccccHHHHhcCccCcEEEcCCCCCC
Q 009194           36 QKDPIAISLPHRDIQE---------LPERL-QCPNLQLFLLYTEGNGP-------MQVSDHFFEGMEGLKVLQFPGIGSS   98 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~---------l~~~~-~~~~L~~L~l~~~~~~~-------~~~~~~~~~~l~~L~~L~l~~~~~~   98 (540)
                      +..+++|.+....++.         +.... .+++|+.|.+.+.....       ......++..+++|+.|+++++.-.
T Consensus       106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred             chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence            4457777776544431         11112 56788888876543210       1123456677888888888877322


Q ss_pred             CCCcccccCCCCcEEEcCCCccCC--ccccc--CCCCCCEEEecCC--C------Ccccchhc--CCCCCCCEEECCCCc
Q 009194           99 SLPSSLGRLINLQTLCLDWCELAD--IAAIG--QLKKLEILSLAYS--N------INQLPVEI--GQLTRLQLLDLSNCW  164 (540)
Q Consensus        99 ~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~--~l~~L~~L~l~~~--~------~~~lp~~~--~~l~~L~~L~l~~~~  164 (540)
                      .++. + .+++|++|++..|.+..  ...+.  .+++|+.|+++.+  .      +..+...+  ..+++|++|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            3444 3 37888888888877664  34444  6888888887531  1      22222222  347888888888777


Q ss_pred             cccccchhhh--hcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194          165 WLEVIAPNVI--SKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       165 ~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                      ..+..+..+.  ..+++|++|+++.|.+.....    ......+..+++|+.|+++.|.++
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCCcCC
Confidence            4333322211  246788888888776541110    122333456678888888777543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.60  E-value=1.3e-06  Score=86.62  Aligned_cols=133  Identities=9%  Similarity=0.107  Sum_probs=89.2

Q ss_pred             CccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccch-h
Q 009194           73 PMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-E  148 (540)
Q Consensus        73 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~-~  148 (540)
                      ...+....|.+|.+|+.+.+..+ +..++ .++.++.+|+.+++..+ ++.  ...+.++.+|+.+.+..+ +..+.. .
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            35566777899999999999754 66654 46889999999999765 443  367888888888766543 333333 3


Q ss_pred             cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecC
Q 009194          149 IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP  220 (540)
Q Consensus       149 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  220 (540)
                      +..+..++......   ...+...++..+.+|+.+.+..+...         -....+..+.+|+.+.+..+
T Consensus       136 F~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~---------I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          136 FKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDSMET---------LHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE---------ECTTTTTTCTTCCBCCCCTT
T ss_pred             eecccccccccCcc---ccccchhhhcccCCCcEEecCCccce---------eccccccCCCCceEEEcCCC
Confidence            55555444443333   33455556889999999998765322         12245677888888777543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.57  E-value=1e-07  Score=93.03  Aligned_cols=99  Identities=24%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             EEcCCC-CCCCCCcccccCCCCcEEEcCC-CccCC-c-ccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCc
Q 009194           90 LQFPGI-GSSSLPSSLGRLINLQTLCLDW-CELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCW  164 (540)
Q Consensus        90 L~l~~~-~~~~l~~~l~~l~~L~~L~l~~-~~~~~-~-~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~  164 (540)
                      ++++++ .+..+|. +..+.+|++|++++ |.++. + ..++++++|++|++++|.++.+|. .+.++++|++|++++|.
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            455555 5555665 55666666666654 55554 2 455666666666666666554443 34566666666666655


Q ss_pred             cccccchhhhhcCCccceEEccCCCcc
Q 009194          165 WLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       165 ~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                       +..+|...+..+. |+.|++.+|.+.
T Consensus        92 -l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 -LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             -CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             -cceeCHHHcccCC-ceEEEeeCCCcc
Confidence             4455544333333 666666655443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.32  E-value=9.1e-05  Score=73.29  Aligned_cols=297  Identities=10%  Similarity=0.058  Sum_probs=149.8

Q ss_pred             CCC-CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCC---CCCCC-cccccCCCCcEEEcCCCccCC--cccccCC
Q 009194           57 QCP-NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIG---SSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQL  129 (540)
Q Consensus        57 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l  129 (540)
                      +|+ .|+++.+...   ...+....|.+|.+|+.+.+..+.   +..+. .++.++.+|+.+.+..+ ++.  ...+..+
T Consensus        61 ~~~~~L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c  136 (394)
T 4gt6_A           61 NYKYVLTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHC  136 (394)
T ss_dssp             TCCSCCCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTC
T ss_pred             CCCCcCEEEEECCC---eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhh
Confidence            453 4788777654   355666667888888888876553   33443 34566777776666543 232  2566777


Q ss_pred             CCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccC
Q 009194          130 KKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER  208 (540)
Q Consensus       130 ~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~  208 (540)
                      .+|+.+.+... +..++. .+..+.+|+.+.+..+  +..+...++. ..+|+.+.+......         .....+..
T Consensus       137 ~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~~---------i~~~af~~  203 (394)
T 4gt6_A          137 EELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVTR---------IGTNAFSE  203 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCCE---------ECTTTTTT
T ss_pred             cccccccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCcccc---------cccchhhh
Confidence            77888777543 333333 3667777888777653  3445544343 345777766543222         12234555


Q ss_pred             CCCccEEEeecCCCCCCCccccc-cCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccc
Q 009194          209 LTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTE  287 (540)
Q Consensus       209 l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~  287 (540)
                      +.++................... .......+...           .....+..+.+-.  ....+.  ......+..|+
T Consensus       204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ip~--~v~~i~--~~aF~~c~~L~  268 (394)
T 4gt6_A          204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRY-----------PSQREDPAFKIPN--GVARIE--THAFDSCAYLA  268 (394)
T ss_dssp             CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC-----------CTTCCCSEEECCT--TEEEEC--TTTTTTCSSCC
T ss_pred             ccccceecccccccccccceeeccccccccccccc-----------ccccccceEEcCC--cceEcc--cceeeeccccc
Confidence            66666665554433222221111 11111111000           0001111111110  011110  11111234445


Q ss_pred             eeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCC
Q 009194          288 DLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSF  367 (540)
Q Consensus       288 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~  367 (540)
                      .+.+-+  .+... ... .+..++.|+.+.+..  .++.+...    ....+.+|+.+.|.+  +++.+....   +..|
T Consensus       269 ~i~lp~--~~~~I-~~~-aF~~c~~L~~i~l~~--~i~~I~~~----aF~~c~~L~~i~lp~--~v~~I~~~a---F~~C  333 (394)
T 4gt6_A          269 SVKMPD--SVVSI-GTG-AFMNCPALQDIEFSS--RITELPES----VFAGCISLKSIDIPE--GITQILDDA---FAGC  333 (394)
T ss_dssp             EEECCT--TCCEE-CTT-TTTTCTTCCEEECCT--TCCEECTT----TTTTCTTCCEEECCT--TCCEECTTT---TTTC
T ss_pred             EEeccc--cccee-cCc-ccccccccccccCCC--cccccCce----eecCCCCcCEEEeCC--cccEehHhH---hhCC
Confidence            444422  11111 111 145667777777742  45555332    445566777777753  455555443   5567


Q ss_pred             CCCCeEEEeeCCCCccccChHHHhhcccccEEEEcc
Q 009194          368 SNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED  403 (540)
Q Consensus       368 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  403 (540)
                      .+|+.+.+-.  +++.+. ...+.++++|+.+++.+
T Consensus       334 ~~L~~i~ip~--sv~~I~-~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          334 EQLERIAIPS--SVTKIP-ESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             TTCCEEEECT--TCCBCC-GGGGTTCTTCCEEEESS
T ss_pred             CCCCEEEECc--ccCEEh-HhHhhCCCCCCEEEECC
Confidence            7788887753  466663 33456777788877765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.18  E-value=0.0003  Score=69.52  Aligned_cols=111  Identities=13%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             ccccHHHHhcCc-cCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCCc---cCC--cccccCCCCCCEEEecCCCCcccc
Q 009194           74 MQVSDHFFEGME-GLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCE---LAD--IAAIGQLKKLEILSLAYSNINQLP  146 (540)
Q Consensus        74 ~~~~~~~~~~l~-~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~---~~~--~~~i~~l~~L~~L~l~~~~~~~lp  146 (540)
                      ..+....|.+++ .|+.+.+..+ ++.+. .++.++.+|+.+.+..+.   ++.  ...+..+.+|+.+.+..+ ++.++
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~  129 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID  129 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence            345555567774 4888888654 44443 456778888888877653   333  256666777776655443 44443


Q ss_pred             hh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCC
Q 009194          147 VE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG  188 (540)
Q Consensus       147 ~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  188 (540)
                      .. +..+.+|+.+.+...  ...++...+..+.+|+.+.+..+
T Consensus       130 ~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          130 SEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence            33 566777777777643  34555555666777777766543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.07  E-value=3.2e-06  Score=74.02  Aligned_cols=111  Identities=14%  Similarity=0.051  Sum_probs=58.0

Q ss_pred             HHHhcCccCcEEEcCCC-CCCC-----CCcccccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCc---
Q 009194           79 HFFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN---  143 (540)
Q Consensus        79 ~~~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~---  143 (540)
                      .++...+.|++|++++| .+..     +...+...++|++|++++|.+.+  .    ..+...++|++|++++|.+.   
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34455666666666666 5532     33344455666666666666553  1    33344456666666666555   


Q ss_pred             --ccchhcCCCCCCCEEEC--CCCccccccch----hhhhcCCccceEEccCCCc
Q 009194          144 --QLPVEIGQLTRLQLLDL--SNCWWLEVIAP----NVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       144 --~lp~~~~~l~~L~~L~l--~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~  190 (540)
                        .+...+...++|++|++  ++|. ++....    ..+...+.|++|++++|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              23444555556666666  4454 222111    1133445566666655544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.05  E-value=5e-06  Score=80.85  Aligned_cols=170  Identities=16%  Similarity=0.192  Sum_probs=109.6

Q ss_pred             hcCCCeEEEccCCCCC----------CCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-CCc
Q 009194           35 IQKDPIAISLPHRDIQ----------ELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPS  102 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~----------~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~  102 (540)
                      ..++++.|.+.+...+          .+.... .+|+|+.|.+.++..  ..++. +  .+++|+.|++..+.+.. ...
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~-~--~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK-K--PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CBCCS-C--BCTTCSEEEEECSBCCHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ceecc-c--cCCCCcEEEEecCCCChHHHH
Confidence            3679999999765432          122322 789999999998742  23332 2  48899999999887642 112


Q ss_pred             cc--ccCCCCcEEEcCCC--c------cCCc-ccc--cCCCCCCEEEecCCCCcc-cchh---cCCCCCCCEEECCCCcc
Q 009194          103 SL--GRLINLQTLCLDWC--E------LADI-AAI--GQLKKLEILSLAYSNINQ-LPVE---IGQLTRLQLLDLSNCWW  165 (540)
Q Consensus       103 ~l--~~l~~L~~L~l~~~--~------~~~~-~~i--~~l~~L~~L~l~~~~~~~-lp~~---~~~l~~L~~L~l~~~~~  165 (540)
                      .+  ..+++|++|+++.+  .      +... ..+  ..+++|++|++.+|.+.. .+..   ...+++|++|+++.|. 
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-  290 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-  290 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence            23  37899999998632  1      1111 122  357999999999998762 2222   2468899999999887 


Q ss_pred             cccc-----chhhhhcCCccceEEccCCCcccccccCCCccchhhccC-CCCccEEEeecCC
Q 009194          166 LEVI-----APNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPD  221 (540)
Q Consensus       166 ~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  221 (540)
                      ++..     +.. +..+++|+.|+++.|.+.        +.....+.. +  ...++++.+.
T Consensus       291 L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~--------d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          291 LTDEGARLLLDH-VDKIKHLKFINMKYNYLS--------DEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC--------HHHHHHHHHHC--CSEEECCSBC
T ss_pred             CChHHHHHHHhh-cccCCcceEEECCCCcCC--------HHHHHHHHHHc--CCEEEecCCc
Confidence            4432     222 356899999999998765        123333332 2  3456777655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.93  E-value=6.5e-06  Score=72.02  Aligned_cols=116  Identities=14%  Similarity=0.091  Sum_probs=84.1

Q ss_pred             cccccCCCCcEEEcCCC-ccCC--c----ccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCcccccc
Q 009194          102 SSLGRLINLQTLCLDWC-ELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVI  169 (540)
Q Consensus       102 ~~l~~l~~L~~L~l~~~-~~~~--~----~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~  169 (540)
                      ..+...++|++|++++| .+.+  .    ..+...++|++|++++|.+.     .+...+...++|++|++++|. ++..
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~  108 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS  108 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence            34567889999999999 7764  1    56667889999999999886     345556677889999999987 4432


Q ss_pred             -----chhhhhcCCccceEEc--cCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194          170 -----APNVISKLSQLEELYM--GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       170 -----~~~~l~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                           ... +...+.|++|++  ++|.+....    .......+...+.|++|++++|.++
T Consensus       109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g----~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEA-LQSNTSLIELRIDNQSQPLGNNV----EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH----HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHH-HHhCCCceEEEecCCCCCCCHHH----HHHHHHHHHhCCCcCEEeccCCCCC
Confidence                 222 566778999999  777765211    1133455667788999999988753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.74  E-value=3.4e-05  Score=71.11  Aligned_cols=79  Identities=18%  Similarity=0.242  Sum_probs=47.3

Q ss_pred             ccCCCCcEEEcCCCccCCc----ccccCCCCCCEEEecCCCCcccchhcCCCC--CCCEEECCCCccccccc------hh
Q 009194          105 GRLINLQTLCLDWCELADI----AAIGQLKKLEILSLAYSNINQLPVEIGQLT--RLQLLDLSNCWWLEVIA------PN  172 (540)
Q Consensus       105 ~~l~~L~~L~l~~~~~~~~----~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~~------~~  172 (540)
                      .++++|++|++++|.++.+    ..+..+++|+.|++++|.+..+. .+..+.  +|++|++.+|.....+|      ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4566677777777766552    33446677777777777666542 233333  67777777776444333      22


Q ss_pred             hhhcCCccceEE
Q 009194          173 VISKLSQLEELY  184 (540)
Q Consensus       173 ~l~~l~~L~~L~  184 (540)
                      ++..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            366777787776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.63  E-value=7.6e-05  Score=68.74  Aligned_cols=87  Identities=22%  Similarity=0.219  Sum_probs=54.4

Q ss_pred             cCCCCCCEEEecCCCCcccc---hhcCCCCCCCEEECCCCccccccchhhhhcCC--ccceEEccCCCcccccccCCCcc
Q 009194          127 GQLKKLEILSLAYSNINQLP---VEIGQLTRLQLLDLSNCWWLEVIAPNVISKLS--QLEELYMGNGFSGWEKVEGGSNA  201 (540)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~lp---~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~  201 (540)
                      .++++|+.|++++|.++.++   ..+..+++|++|++++|. +..+..  +..+.  +|++|++.+|.+..... .....
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~-~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERE--LDKIKGLKLEELWLDGNSLCDTFR-DQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGG--GGGGTTSCCSEEECTTSTTGGGCS-SHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchh--hhhcccCCcceEEccCCcCccccC-cchhH
Confidence            46788888888888777544   445678888888888877 444422  44444  78888888887652100 00011


Q ss_pred             chhhccCCCCccEEEe
Q 009194          202 SLVELERLTELTTLEI  217 (540)
Q Consensus       202 ~~~~l~~l~~L~~L~l  217 (540)
                      ....+..+++|+.|+-
T Consensus       243 ~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          243 ISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHCTTCCEESS
T ss_pred             HHHHHHHCcccCeECC
Confidence            2234566778877653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.43  E-value=0.016  Score=56.54  Aligned_cols=83  Identities=17%  Similarity=0.208  Sum_probs=44.3

Q ss_pred             CCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccC
Q 009194          307 GEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFS  386 (540)
Q Consensus       307 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  386 (540)
                      +..+..|+.+.+..  .++.+...    ....+.+|+.+.+.+  .++.+....   +..+++|+.+.+.+. .++.++.
T Consensus       236 f~~~~~L~~i~lp~--~v~~I~~~----aF~~~~~l~~i~l~~--~i~~i~~~a---F~~c~~L~~i~l~~~-~i~~I~~  303 (379)
T 4h09_A          236 FYGMKALDEIAIPK--NVTSIGSF----LLQNCTALKTLNFYA--KVKTVPYLL---CSGCSNLTKVVMDNS-AIETLEP  303 (379)
T ss_dssp             TTTCSSCCEEEECT--TCCEECTT----TTTTCTTCCEEEECC--CCSEECTTT---TTTCTTCCEEEECCT-TCCEECT
T ss_pred             ccCCccceEEEcCC--CccEeCcc----ccceeehhccccccc--cceeccccc---ccccccccccccccc-ccceehh
Confidence            34556666666643  24444221    334455666666642  344444332   455677777777542 4555533


Q ss_pred             hHHHhhcccccEEEEc
Q 009194          387 FSMAKNLLRLQKVKVE  402 (540)
Q Consensus       387 ~~~~~~l~~L~~L~l~  402 (540)
                       ..+.++.+|+.+.+-
T Consensus       304 -~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          304 -RVFMDCVKLSSVTLP  318 (379)
T ss_dssp             -TTTTTCTTCCEEECC
T ss_pred             -hhhcCCCCCCEEEcC
Confidence             334566677777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.32  E-value=0.021  Score=55.71  Aligned_cols=103  Identities=14%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             HhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCC
Q 009194           81 FEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQ  156 (540)
Q Consensus        81 ~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~  156 (540)
                      +..+..|+.+.+..+ +..+ ...+.++.+|+.+.+..+ ++.  ...+.++.+|+.+.+..+ +..++.. +..+.+|+
T Consensus       213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~  289 (379)
T 4h09_A          213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT  289 (379)
T ss_dssp             TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred             cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence            445555666555433 1211 223445555666655443 222  244555556666655432 3333332 45566666


Q ss_pred             EEECCCCccccccchhhhhcCCccceEEccC
Q 009194          157 LLDLSNCWWLEVIAPNVISKLSQLEELYMGN  187 (540)
Q Consensus       157 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  187 (540)
                      .+.+.++. +..++...+..+.+|+.+.+..
T Consensus       290 ~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          290 KVVMDNSA-IETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             EEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred             cccccccc-cceehhhhhcCCCCCCEEEcCc
Confidence            66665443 4455555555666666666543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.12  E-value=0.026  Score=48.92  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=46.6

Q ss_pred             HHHHhcCccCcEEEcCCC-CCCC-----CCcccccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCc--
Q 009194           78 DHFFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN--  143 (540)
Q Consensus        78 ~~~~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~--  143 (540)
                      ..+..+-+.|+.|+++++ .+..     +-..+..-..|+.|++++|.+.+  .    +.+..-+.|+.|+++.|.+.  
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            334445566666666654 5432     33334444556667776666653  1    33344566666666666655  


Q ss_pred             ---ccchhcCCCCCCCEEECCCC
Q 009194          144 ---QLPVEIGQLTRLQLLDLSNC  163 (540)
Q Consensus       144 ---~lp~~~~~l~~L~~L~l~~~  163 (540)
                         .+-..+..-+.|++|+++++
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHhhCCceeEEECCCC
Confidence               33334444455666666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.32  E-value=0.074  Score=42.78  Aligned_cols=35  Identities=20%  Similarity=0.266  Sum_probs=16.5

Q ss_pred             CCCEEECCCCccccccchhhhhcCCccceEEccCCC
Q 009194          154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF  189 (540)
Q Consensus       154 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  189 (540)
                      +|++|++++|. +..++...+..+++|+.|++.+|.
T Consensus        32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence            34455554444 444444444444445555544443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.14  E-value=0.099  Score=42.04  Aligned_cols=52  Identities=19%  Similarity=0.241  Sum_probs=24.6

Q ss_pred             EEEcCCCCCC--CCCcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCC
Q 009194           89 VLQFPGIGSS--SLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNI  142 (540)
Q Consensus        89 ~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~  142 (540)
                      +++.+++.++  .+|..+  -.+|++|+|++|.++. + ..+..+++|++|++.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4455555554  455322  1235555555555544 2 3444455555555555433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.70  E-value=0.054  Score=46.94  Aligned_cols=114  Identities=16%  Similarity=0.124  Sum_probs=62.9

Q ss_pred             ccCCCCcEEEcCCC-ccCC-----c-ccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCCccccccchh
Q 009194          105 GRLINLQTLCLDWC-ELAD-----I-AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAPN  172 (540)
Q Consensus       105 ~~l~~L~~L~l~~~-~~~~-----~-~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~~~~~  172 (540)
                      .+-+.|++|+++++ .+.+     + +.+..-..|+.|++++|.+.     .+...+..-+.|++|+++.|. ++.....
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~  116 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA  116 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence            34566888888875 5653     1 45556677888888887776     344445556677777777776 3322211


Q ss_pred             h----hhcCCccceEEccCCCc-ccccccCCCccchhhccCCCCccEEEeecCC
Q 009194          173 V----ISKLSQLEELYMGNGFS-GWEKVEGGSNASLVELERLTELTTLEIEVPD  221 (540)
Q Consensus       173 ~----l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  221 (540)
                      .    +..-+.|++|+++++.. .....  ........+..-+.|+.|++..+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~--g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQ--VEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHH--HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHH--HHHHHHHHHHhCCCcCeEeccCCC
Confidence            1    23334577777765432 10000  011233344555667777766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	540
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 8e-09
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 6/121 (4%)

Query: 42  ISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP 101
           + L    I  +        L       E N            ++ L  L       S + 
Sbjct: 268 LKLGANQISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 102 SSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
             +  L  LQ L     +++D++++  L  +  LS  ++ I+ L   +  LTR+  L L+
Sbjct: 324 P-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLN 381

Query: 162 N 162
           +
Sbjct: 382 D 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           L NL  L L +  ++DI+ +  L KL+ L  A + ++ +   +  LT +  L   +    
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364

Query: 167 EVIAPNVISKLSQLEELYMGN 187
           ++     ++ L+++ +L + +
Sbjct: 365 DLTP---LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 101 PSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160
             S   L  + TL  D   +  I  +  L  L  ++ + + +  +   +  LT+L  + +
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILM 95

Query: 161 SNCWW 165
           +N   
Sbjct: 96  NNNQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
           L       L    + D  +   L ++  L      I  +   +  L  L  ++ SN   L
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QL 78

Query: 167 EVIAPNVISKLSQLEELYMGNGFSGW 192
             I P  +  L++L ++ M N     
Sbjct: 79  TDITP--LKNLTKLVDILMNNNQIAD 102

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 6e-05
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 1/89 (1%)

Query: 98  SSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157
             L   + +  +     LD   L     +       +L+   S    L +    +  L  
Sbjct: 10  EQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69

Query: 158 LDLSNCW-WLEVIAPNVISKLSQLEELYM 185
           L+LSN   +      +++ K   L+ L +
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNL 98

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 79  HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA 138
              +    L+ L         LP+       L+ L   +  LA++  +   + L+ L + 
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPEL--PQNLKQLHVE 332

Query: 139 YSNINQLPVEIGQLTRLQL 157
           Y+ + + P     +  L++
Sbjct: 333 YNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
             +L+ L +   +L ++ A+    +LE L  +++++ ++P     L +   L +      
Sbjct: 283 PPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPELPQNLKQ---LHVEYNPLR 337

Query: 167 EVIAPNVISKLSQL 180
           E   P++   +  L
Sbjct: 338 EF--PDIPESVEDL 349

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 111 QTLCLDWCELADIAAIGQL--KKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEV 168
           QTL L    L      G+L  + +       S ++Q   E     R+Q +DLSN      
Sbjct: 3   QTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 169 IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTEL 212
               ++S+ S+L+ L +        ++      +L +   L  L
Sbjct: 62  TLHGILSQCSKLQNLSL-----EGLRLSDPIVNTLAKNSNLVRL 100

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN 162
           L  L TL L+  +++DI  +  L KL+ L L+ ++I+ L   +  L  L +L+L +
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 12/97 (12%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 108 INLQTLCLDWCELADIAA---IGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLD 159
           +++Q+L +   EL+D      +  L++ +++ L    +       +   +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 160 LSNC----WWLEVIAPNVISKLSQLEELYMGNGFSGW 192
           L +       +  +   + +   ++++L + N     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 90  LQFPGIGSSSLPSSLGRLINLQTLCLDWCELADI------AAIGQLKKLEILSLAYSNIN 143
           +Q   +  +     L  L   Q + LD C L +       +A+     L  L+L  + + 
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 144 QLPVEI------GQLTRLQLLDLSNCWW 165
            + V            ++Q L L NC  
Sbjct: 69  DVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 81  FEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYS 140
            E +  +  L        +LP +L  L  L+ L      L ++  +  L +L+ L L  +
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 75

Query: 141 NINQLPV--EIGQLTRLQLLDLSN--CWWLEVIAPNVISKLSQLEEL 183
            + Q      +    RL LL+L        E I   +   L  +  +
Sbjct: 76  RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 124 AAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL 166
             + QLK L  L+++++N+     + G L R  +   +N   L
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 97  SSSLPSSLGRLINLQTLCLDWCEL-ADIAAIGQLKKLEILSLAYSN 141
             +LP  L +L  L +L + +  L  +I   G L++ ++ + A + 
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 91  QFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEIL 135
             P I    + ++L  L   + L L    +  I+++  ++ L IL
Sbjct: 33  MIPPI--EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRIL 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 107 LINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWW 165
           L N   +      + D      L  +  LS   + +  +   +  L  L  L+L +   
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 79  HFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSL 137
                +  L  L+      S +   L  L NL  + L   +++D++ +     L I++L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	540
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.33
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.25
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.83
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.82
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.75
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.56
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.73
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.36

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=4e-19  Score=174.88  Aligned_cols=341  Identities=16%  Similarity=0.178  Sum_probs=171.9

Q ss_pred             cCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCC
Q 009194           83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSN  162 (540)
Q Consensus        83 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~  162 (540)
                      .+.+|++|+++++.++.+. .+..+++|++|++++|.++++..++++++|++|++++|.+..++. ++.+++|+.|++.+
T Consensus        42 ~l~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             HhCCCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-cccccccccccccc
Confidence            4556777777777776653 466777777777777777764457777777777777777666653 66777777777766


Q ss_pred             CccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEec
Q 009194          163 CWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIG  242 (540)
Q Consensus       163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  242 (540)
                      +. ...++.  ......+.......+.+.....        .....................+..   ............
T Consensus       120 ~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  185 (384)
T d2omza2         120 NQ-ITDIDP--LKNLTNLNRLELSSNTISDISA--------LSGLTSLQQLSFGNQVTDLKPLAN---LTTLERLDISSN  185 (384)
T ss_dssp             SC-CCCCGG--GTTCTTCSEEEEEEEEECCCGG--------GTTCTTCSEEEEEESCCCCGGGTT---CTTCCEEECCSS
T ss_pred             cc-cccccc--cccccccccccccccccccccc--------ccccccccccccccccchhhhhcc---cccccccccccc
Confidence            55 333333  2334444444443332221000        000001111111111111111100   011111111111


Q ss_pred             CCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeecccc
Q 009194          243 DGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS  322 (540)
Q Consensus       243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  322 (540)
                      .   .........+++++.+.++++. +..+.    .....++|+.|.+.++. +++.    +.+..+++|+.+.+.++ 
T Consensus       186 ~---~~~~~~~~~l~~~~~l~l~~n~-i~~~~----~~~~~~~L~~L~l~~n~-l~~~----~~l~~l~~L~~L~l~~n-  251 (384)
T d2omza2         186 K---VSDISVLAKLTNLESLIATNNQ-ISDIT----PLGILTNLDELSLNGNQ-LKDI----GTLASLTNLTDLDLANN-  251 (384)
T ss_dssp             C---CCCCGGGGGCTTCSEEECCSSC-CCCCG----GGGGCTTCCEEECCSSC-CCCC----GGGGGCTTCSEEECCSS-
T ss_pred             c---cccccccccccccceeeccCCc-cCCCC----cccccCCCCEEECCCCC-CCCc----chhhcccccchhccccC-
Confidence            1   1111124455566666665521 11111    11234566666665543 2221    12445666666666666 


Q ss_pred             CceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEc
Q 009194          323 EILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVE  402 (540)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~  402 (540)
                      .++.+.      ....+++|+.|++.++ .++.+..     ...++.++.+.+..+ .++.++   ....+++++.|+++
T Consensus       252 ~l~~~~------~~~~~~~L~~L~l~~~-~l~~~~~-----~~~~~~l~~l~~~~n-~l~~~~---~~~~~~~l~~L~ls  315 (384)
T d2omza2         252 QISNLA------PLSGLTKLTELKLGAN-QISNISP-----LAGLTALTNLELNEN-QLEDIS---PISNLKNLTYLTLY  315 (384)
T ss_dssp             CCCCCG------GGTTCTTCSEEECCSS-CCCCCGG-----GTTCTTCSEEECCSS-CCSCCG---GGGGCTTCSEEECC
T ss_pred             ccCCCC------cccccccCCEeeccCc-ccCCCCc-----ccccccccccccccc-cccccc---ccchhcccCeEECC
Confidence            233332      3455666666666543 2332221     344566666666654 344432   24556666666666


Q ss_pred             cccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccc
Q 009194          403 DCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIE  482 (540)
Q Consensus       403 ~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~  482 (540)
                      ++ +++++.                         .+..+++|++|++++| ++++++   .+.++++|++|+++++ +++
T Consensus       316 ~n-~l~~l~-------------------------~l~~l~~L~~L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N-~l~  364 (384)
T d2omza2         316 FN-NISDIS-------------------------PVSSLTKLQRLFFANN-KVSDVS---SLANLTNINWLSAGHN-QIS  364 (384)
T ss_dssp             SS-CCSCCG-------------------------GGGGCTTCCEEECCSS-CCCCCG---GGGGCTTCCEEECCSS-CCC
T ss_pred             CC-CCCCCc-------------------------ccccCCCCCEEECCCC-CCCCCh---hHcCCCCCCEEECCCC-cCC
Confidence            54 444331                         2345678888888887 566663   3567788888888765 455


Q ss_pred             eeccccccCCCCccccccccceeeccc
Q 009194          483 GVVNTTTLGGRDEFKVFPKLHYLSLHW  509 (540)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~L~~L~l~~  509 (540)
                      +++.         +..+++|++|+|++
T Consensus       365 ~l~~---------l~~l~~L~~L~L~~  382 (384)
T d2omza2         365 DLTP---------LANLTRITQLGLND  382 (384)
T ss_dssp             BCGG---------GTTCTTCSEEECCC
T ss_pred             CChh---------hccCCCCCEeeCCC
Confidence            5431         33567777777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=2.6e-19  Score=176.27  Aligned_cols=320  Identities=16%  Similarity=0.156  Sum_probs=185.5

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      ..++++|+++++.+..+.....+++|++|++++|.+  .+++.  ++++++|++|++++|.+..++. ++.+++|++|++
T Consensus        43 l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l--~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~  117 (384)
T d2omza2          43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  117 (384)
T ss_dssp             HTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             hCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcC--CCCcc--ccCCcccccccccccccccccc-cccccccccccc
Confidence            567999999999998887666889999999999986  55554  6889999999999999887764 788999999999


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccc--------------------hhcCCCCCCCEEECCCCccccccchhhhh
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLP--------------------VEIGQLTRLQLLDLSNCWWLEVIAPNVIS  175 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp--------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~  175 (540)
                      .++.++..........+.......+.+..+.                    ..+.............+. . ..... ..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-~~  194 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-V-SDISV-LA  194 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-C-CCCGG-GG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc-c-ccccc-cc
Confidence            9888777444555566666665544332111                    112233333333333333 1 11222 56


Q ss_pred             cCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccc
Q 009194          176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVK  255 (540)
Q Consensus       176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  255 (540)
                      .+++++.+.++++.+.          ........++|+.|++.+|.+..++.....++|+.+.+..+.+...   .....
T Consensus       195 ~l~~~~~l~l~~n~i~----------~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~  261 (384)
T d2omza2         195 KLTNLESLIATNNQIS----------DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL---APLSG  261 (384)
T ss_dssp             GCTTCSEEECCSSCCC----------CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGTT
T ss_pred             cccccceeeccCCccC----------CCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCC---Ccccc
Confidence            7788888888877654          1223456678888888888776654322226666666654433222   12445


Q ss_pred             cccccEEEEeccccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccc
Q 009194          256 SEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVR  335 (540)
Q Consensus       256 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  335 (540)
                      +++|++|+++++.    +..... ...++.++.+...... ++.    +.....+++++.|+++++ +++.+.      +
T Consensus       262 ~~~L~~L~l~~~~----l~~~~~-~~~~~~l~~l~~~~n~-l~~----~~~~~~~~~l~~L~ls~n-~l~~l~------~  324 (384)
T d2omza2         262 LTKLTELKLGANQ----ISNISP-LAGLTALTNLELNENQ-LED----ISPISNLKNLTYLTLYFN-NISDIS------P  324 (384)
T ss_dssp             CTTCSEEECCSSC----CCCCGG-GTTCTTCSEEECCSSC-CSC----CGGGGGCTTCSEEECCSS-CCSCCG------G
T ss_pred             cccCCEeeccCcc----cCCCCc-cccccccccccccccc-ccc----ccccchhcccCeEECCCC-CCCCCc------c
Confidence            5666666665521    111111 1123344444443322 111    111344556666666555 333331      3


Q ss_pred             cccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcc
Q 009194          336 CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED  403 (540)
Q Consensus       336 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  403 (540)
                      ...+|+|++|++++| .+++++.     ++.+++|++|+++++ +++++++   +.++++|+.|+|++
T Consensus       325 l~~l~~L~~L~L~~n-~l~~l~~-----l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~  382 (384)
T d2omza2         325 VSSLTKLQRLFFANN-KVSDVSS-----LANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLND  382 (384)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCC
T ss_pred             cccCCCCCEEECCCC-CCCCChh-----HcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCC
Confidence            445566666666654 4444431     344566666666554 4555533   34556666666654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.73  E-value=3.5e-16  Score=148.36  Aligned_cols=264  Identities=16%  Similarity=0.139  Sum_probs=169.5

Q ss_pred             ccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEe
Q 009194           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL  137 (540)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l  137 (540)
                      .++++-++...  .++|.++   .+++++|++++|.++.+|+ ++.++++|++|++++|.+..  +..+.++++|++|++
T Consensus        12 ~~~~~C~~~~L--~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          12 LRVVQCSDLGL--EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TTEEECTTSCC--CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecCCCC--CccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            44555555443  5556543   3578888888888888775 57888888888888888776  467888888888888


Q ss_pred             cCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEe
Q 009194          138 AYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI  217 (540)
Q Consensus       138 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  217 (540)
                      ++|+++.+|..  ....++.|++..+. +..++...+.....++.++...+.....      ......+..+++|+.+++
T Consensus        87 ~~n~l~~l~~~--~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~------~~~~~~~~~l~~L~~l~l  157 (305)
T d1xkua_          87 SKNQLKELPEK--MPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS------GIENGAFQGMKKLSYIRI  157 (305)
T ss_dssp             CSSCCSBCCSS--CCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG------GBCTTGGGGCTTCCEEEC
T ss_pred             cCCccCcCccc--hhhhhhhhhccccc-hhhhhhhhhhcccccccccccccccccc------CCCccccccccccCcccc
Confidence            88888888764  34578888888876 5666666566677777777666543311      122345667778888888


Q ss_pred             ecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeeccccCc
Q 009194          218 EVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGV  297 (540)
Q Consensus       218 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (540)
                      ..|....++..                          .++++++|++.++                           ...
T Consensus       158 ~~n~l~~l~~~--------------------------~~~~L~~L~l~~n---------------------------~~~  184 (305)
T d1xkua_         158 ADTNITTIPQG--------------------------LPPSLTELHLDGN---------------------------KIT  184 (305)
T ss_dssp             CSSCCCSCCSS--------------------------CCTTCSEEECTTS---------------------------CCC
T ss_pred             ccCCccccCcc--------------------------cCCccCEEECCCC---------------------------cCC
Confidence            87776555432                          2234455554441                           111


Q ss_pred             ccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEee
Q 009194          298 QSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS  377 (540)
Q Consensus       298 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~  377 (540)
                      ......   +..++.++.|.++++ .++.+...    ....+++|+.|+++++ .++.++..    +..+++|++|++++
T Consensus       185 ~~~~~~---~~~~~~l~~L~~s~n-~l~~~~~~----~~~~l~~L~~L~L~~N-~L~~lp~~----l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         185 KVDAAS---LKGLNNLAKLGLSFN-SISAVDNG----SLANTPHLRELHLNNN-KLVKVPGG----LADHKYIQVVYLHN  251 (305)
T ss_dssp             EECTGG---GTTCTTCCEEECCSS-CCCEECTT----TGGGSTTCCEEECCSS-CCSSCCTT----TTTCSSCCEEECCS
T ss_pred             CCChhH---hhccccccccccccc-cccccccc----cccccccceeeecccc-cccccccc----cccccCCCEEECCC
Confidence            000011   345667777777766 45554322    3456677888888775 56666543    56678888888887


Q ss_pred             CCCCccccCh-----HHHhhcccccEEEEcccc
Q 009194          378 CRKLKYLFSF-----SMAKNLLRLQKVKVEDCD  405 (540)
Q Consensus       378 c~~l~~~~~~-----~~~~~l~~L~~L~l~~c~  405 (540)
                      + +++.++..     +.....++|+.|++.+++
T Consensus       252 N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         252 N-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             S-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             C-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            5 57766432     123456778888888865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=148.39  Aligned_cols=190  Identities=21%  Similarity=0.217  Sum_probs=151.1

Q ss_pred             CCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcC
Q 009194           37 KDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD  116 (540)
Q Consensus        37 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~  116 (540)
                      ....+++.+++.+..+|..+ .+++++|++++|.+  ..++.+.|.++++|++|++++|.++.++. ++.+++|++|+++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls   85 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLL--YTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLS   85 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCC--SEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECC
T ss_pred             CCCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcC--CCcCHHHhhcccccccccccccccccccc-ccccccccccccc
Confidence            34566788888888887633 25799999999986  66777778899999999999999887764 5688999999999


Q ss_pred             CCccCC-cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       117 ~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      +|.++. +..+.++++|++|+++++.+..++.. +..+.++++|++.+|. +..++...+..+++|+.+++++|.+... 
T Consensus        86 ~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~-  163 (266)
T d1p9ag_          86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL-  163 (266)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC-
T ss_pred             cccccccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhccccccccccc-
Confidence            999887 78888999999999999988766544 6788999999999987 7778777678899999999999887622 


Q ss_pred             ccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEE
Q 009194          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKI  239 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l  239 (540)
                             ....++.+++|++|++++|.+..+|.++.. ++|+.|.+
T Consensus       164 -------~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L  202 (266)
T d1p9ag_         164 -------PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL  202 (266)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred             -------CccccccccccceeecccCCCcccChhHCCCCCCCEEEe
Confidence                   224477889999999999998888876433 34444433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.3e-16  Score=147.96  Aligned_cols=185  Identities=17%  Similarity=0.119  Sum_probs=157.5

Q ss_pred             cchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC
Q 009194           24 VADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP  101 (540)
Q Consensus        24 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~  101 (540)
                      +.+++.+|. .+++++++|++++|.+..++.  +.++++|++|++++|.+  ..++.  ++.+++|++|++++|.+...+
T Consensus        19 ~~~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l--~~l~~--~~~l~~L~~L~Ls~N~l~~~~   93 (266)
T d1p9ag_          19 KRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQV--DGTLPVLGTLDLSHNQLQSLP   93 (266)
T ss_dssp             TSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEEC--CSCCTTCCEEECCSSCCSSCC
T ss_pred             CCCCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccc--ccccc--ccccccccccccccccccccc
Confidence            445566664 467899999999999988865  34899999999999986  45553  478999999999999999888


Q ss_pred             cccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCC
Q 009194          102 SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLS  178 (540)
Q Consensus       102 ~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~  178 (540)
                      ..+..+++|++|+++++.+..  +..+..+.++++|++++|.+..+|.. +..+++++++++++|. +..++...++.++
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~~l~  172 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLE  172 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCT
T ss_pred             cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-ccccCcccccccc
Confidence            889999999999999999876  47788999999999999999988766 5779999999999998 7778777689999


Q ss_pred             ccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCC
Q 009194          179 QLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE  223 (540)
Q Consensus       179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  223 (540)
                      +|++|++++|.+.         ..+..+..+++|+.|++.+|+..
T Consensus       173 ~L~~L~Ls~N~L~---------~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         173 NLDTLLLQENSLY---------TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TCCEEECCSSCCC---------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccceeecccCCCc---------ccChhHCCCCCCCEEEecCCCCC
Confidence            9999999999887         34455667889999999999743

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.2e-16  Score=145.49  Aligned_cols=196  Identities=22%  Similarity=0.274  Sum_probs=157.3

Q ss_pred             ecCcchhhhhhhhhhcCCCeEEEccCCCCCCCCC--cCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCC-CCC
Q 009194           21 VPNVADLEKKMEETIQKDPIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGS   97 (540)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~   97 (540)
                      ..++.+++++|. .++..++.|++++|.++.++.  +.++++|+.|+++++..  ..++...+.++..++.+.... +.+
T Consensus        17 ~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l--~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccc--ccccccccccccccccccccccccc
Confidence            445566777775 578889999999999988876  34889999999999886  556666677888999887654 456


Q ss_pred             CCC-CcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhh
Q 009194           98 SSL-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNV  173 (540)
Q Consensus        98 ~~l-~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~  173 (540)
                      ..+ +..+.++++|++|++++|.+..  +..+....+|+.+++++|.++.+|.. +..+++|++|++++|. +..++...
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~  172 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERA  172 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhh
Confidence            665 5568899999999999998776  46778889999999999999888654 7788999999999987 67777776


Q ss_pred             hhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCcc
Q 009194          174 ISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD  228 (540)
Q Consensus       174 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  228 (540)
                      +..+++|+.+.+++|.+..        ..+..+..+++|++|+++.|.+..++..
T Consensus       173 f~~l~~L~~l~l~~N~l~~--------i~~~~f~~l~~L~~L~l~~N~i~~~~~~  219 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAH--------VHPHAFRDLGRLMTLYLFANNLSALPTE  219 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             hccccccchhhhhhccccc--------cChhHhhhhhhccccccccccccccccc
Confidence            8899999999999887762        2245678889999999999998777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=1.8e-15  Score=143.41  Aligned_cols=266  Identities=14%  Similarity=0.108  Sum_probs=140.9

Q ss_pred             CCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccch-hcCCCCCCCEEECCCCccccccchhhhhcCCccceEEcc
Q 009194          109 NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG  186 (540)
Q Consensus       109 ~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  186 (540)
                      ..++++-++..++. |..+.  +++++|++++|.++.+|. .+.++++|++|++++|. +..++...+.++++|+.|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEeccc
Confidence            45666666666666 55543  567788888887777775 47777788888887777 455554446777777777777


Q ss_pred             CCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEec
Q 009194          187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG  266 (540)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  266 (540)
                      +|.+...         +.  .....++.|++..+....++.....                       .......+....
T Consensus        88 ~n~l~~l---------~~--~~~~~l~~L~~~~n~l~~l~~~~~~-----------------------~~~~~~~l~~~~  133 (305)
T d1xkua_          88 KNQLKEL---------PE--KMPKTLQELRVHENEITKVRKSVFN-----------------------GLNQMIVVELGT  133 (305)
T ss_dssp             SSCCSBC---------CS--SCCTTCCEEECCSSCCCBBCHHHHT-----------------------TCTTCCEEECCS
T ss_pred             CCccCcC---------cc--chhhhhhhhhccccchhhhhhhhhh-----------------------cccccccccccc
Confidence            7765411         11  1224566666666554444332111                       111122222221


Q ss_pred             cccccccccchhhhhhhcccceeeeccccCcccccccCccCCCCccccEEeeccccCceeeeccccccccccCcccceec
Q 009194          267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS  346 (540)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  346 (540)
                                                 ......... ...+..+++|+.+.+.++ +++.+       +...+++|+.|+
T Consensus       134 ---------------------------n~~~~~~~~-~~~~~~l~~L~~l~l~~n-~l~~l-------~~~~~~~L~~L~  177 (305)
T d1xkua_         134 ---------------------------NPLKSSGIE-NGAFQGMKKLSYIRIADT-NITTI-------PQGLPPSLTELH  177 (305)
T ss_dssp             ---------------------------SCCCGGGBC-TTGGGGCTTCCEEECCSS-CCCSC-------CSSCCTTCSEEE
T ss_pred             ---------------------------ccccccCCC-ccccccccccCccccccC-Ccccc-------CcccCCccCEEE
Confidence                                       110000000 001334555666666655 23322       233456666666


Q ss_pred             ccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEccccccccccccCCCCCCCccceee
Q 009194          347 LMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIE  426 (540)
Q Consensus       347 l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~  426 (540)
                      +.++......+. .   ...++.+++|.++++ .++.+++ ..+.++++|++|++++| +++.++               
T Consensus       178 l~~n~~~~~~~~-~---~~~~~~l~~L~~s~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~L~~lp---------------  235 (305)
T d1xkua_         178 LDGNKITKVDAA-S---LKGLNNLAKLGLSFN-SISAVDN-GSLANTPHLRELHLNNN-KLVKVP---------------  235 (305)
T ss_dssp             CTTSCCCEECTG-G---GTTCTTCCEEECCSS-CCCEECT-TTGGGSTTCCEEECCSS-CCSSCC---------------
T ss_pred             CCCCcCCCCChh-H---hhccccccccccccc-ccccccc-ccccccccceeeecccc-cccccc---------------
Confidence            665433222221 1   445566667766665 5555533 33456667777777765 444432               


Q ss_pred             ecccCCCCCCCccCCCCccEEEEccCCCcccccchh-----hhhhcCCCcEEEEeccc
Q 009194          427 INAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYS-----MVNSLGQLQHLEIRNCR  479 (540)
Q Consensus       427 i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~-----~~~~l~~L~~L~i~~C~  479 (540)
                               ..+..+++|+.|+++++ +|++++...     .....++|+.|++++.+
T Consensus       236 ---------~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         236 ---------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             ---------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ---------cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence                     22334566677777665 466553221     22345667777777655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.1e-15  Score=134.30  Aligned_cols=165  Identities=24%  Similarity=0.344  Sum_probs=120.7

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      ...+++++++++.+..++....+++|++|++++|.+  ..++.  ++++++|++|++++|.++.+| .+.++++|++|++
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i--~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccc--cCccc--cccCccccccccccccccccc-ccccccccccccc
Confidence            446788888888877777666788888888888875  44443  467888888888888877766 3677888888888


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      +++.+..+..+..+++|+.++++++.+...+ .+..+++|+++++++|. +..++.  ++++++|++|++++|.+.    
T Consensus       120 ~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~--l~~l~~L~~L~Ls~N~i~----  191 (210)
T d1h6ta2         120 EHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS----  191 (210)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccccccccc-cccccc--ccCCCCCCEEECCCCCCC----
Confidence            8887766666777888888888887776544 46677888888888876 555554  677888888888877664    


Q ss_pred             cCCCccchhhccCCCCccEEEeec
Q 009194          196 EGGSNASLVELERLTELTTLEIEV  219 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~  219 (540)
                            .++.+.++++|+.|++++
T Consensus       192 ------~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 ------DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ------BCGGGTTCTTCSEEEEEE
T ss_pred             ------CChhhcCCCCCCEEEccC
Confidence                  234577777888887763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.5e-15  Score=132.54  Aligned_cols=161  Identities=20%  Similarity=0.280  Sum_probs=106.6

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      .+++++++++++.+..+.....+++|++|++++|.+  ..++.  ++++++|++|++++|.+..++. +.++++|++|++
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l--~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccc--cCccc--ccCCcccccccccccccccccc-cccccccccccc
Confidence            456777777777776666655677777777777765  33433  4677777777777777666553 667777777777


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      +++.+.....+..+++|++|++++|.+..++ .+..+++|++|++.+|. +..++.  ++++++|++|++++|.+.    
T Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~--l~~l~~L~~L~ls~N~i~----  185 (199)
T d2omxa2         114 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKP--LANLTTLERLDISSNKVS----  185 (199)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred             cccccccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCcc--ccCCCCCCEEECCCCCCC----
Confidence            7776655555667777777777777666654 46677777777777766 555554  667777777777777654    


Q ss_pred             cCCCccchhhccCCCCccEE
Q 009194          196 EGGSNASLVELERLTELTTL  215 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L  215 (540)
                            .++.++++++|++|
T Consensus       186 ------~i~~l~~L~~L~~L  199 (199)
T d2omxa2         186 ------DISVLAKLTNLESL  199 (199)
T ss_dssp             ------CCGGGGGCTTCSEE
T ss_pred             ------CCccccCCCCCCcC
Confidence                  12345566666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4.4e-16  Score=137.53  Aligned_cols=176  Identities=20%  Similarity=0.285  Sum_probs=139.4

Q ss_pred             EEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCcc
Q 009194           41 AISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCEL  120 (540)
Q Consensus        41 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~  120 (540)
                      +..+..+.+........++++++|+++++.+  .++..  ++.+++|++|++++|.++.++. ++++++|++|++++|.+
T Consensus        22 ~~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i--~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          22 KTVLGKTNVTDTVSQTDLDQVTTLQADRLGI--KSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHHTTCSSTTSEECHHHHTTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             HHHhCCCCCCCccCHHHhcCCCEEECCCCCC--CCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccc
Confidence            3455566665544444678999999999986  44432  4789999999999999988765 88999999999999998


Q ss_pred             CCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCc
Q 009194          121 ADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSN  200 (540)
Q Consensus       121 ~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  200 (540)
                      .....+.++++|+.|+++++....++ .+..+++|+.|++++|. +..++.  +..+++|+.|++.+|.+.         
T Consensus        97 ~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~l~---------  163 (199)
T d2omxa2          97 ADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQVT---------  163 (199)
T ss_dssp             CCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCC---------
T ss_pred             cccccccccccccccccccccccccc-ccchhhhhHHhhhhhhh-hccccc--cccccccccccccccccc---------
Confidence            87667899999999999998777664 47889999999999987 666654  789999999999998775         


Q ss_pred             cchhhccCCCCccEEEeecCCCCCCCccccc-cCccE
Q 009194          201 ASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQR  236 (540)
Q Consensus       201 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~  236 (540)
                       .+..++++++|+.|++++|.+..++. +.. ++|+.
T Consensus       164 -~l~~l~~l~~L~~L~ls~N~i~~i~~-l~~L~~L~~  198 (199)
T d2omxa2         164 -DLKPLANLTTLERLDISSNKVSDISV-LAKLTNLES  198 (199)
T ss_dssp             -CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred             -CCccccCCCCCCEEECCCCCCCCCcc-ccCCCCCCc
Confidence             23458889999999999998877653 222 55554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=8.4e-14  Score=134.38  Aligned_cols=140  Identities=18%  Similarity=0.246  Sum_probs=107.7

Q ss_pred             hcCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEE
Q 009194           35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC  114 (540)
Q Consensus        35 ~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  114 (540)
                      ...++++|+++++.+..+|+.  .++|++|++++|.+  .++|.    .+.+|+.|++.++.++.++..   .+.|++|+
T Consensus        36 ~~~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l--~~lp~----~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          36 LDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSL--TELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             HHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCC--SSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             HHcCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCC--ccccc----chhhhhhhhhhhcccchhhhh---cccccccc
Confidence            345789999999999889874  57899999999986  56764    467899999999998877642   24699999


Q ss_pred             cCCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       115 l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      +++|.+...+.++++++|++|+++++.+...|..   ...+..+.+..+. ......  ++.++.++.+.+..+...
T Consensus       105 L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~-~~~~~~--l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         105 VSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             CCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccchhhhccceeeccccccccccccc---cccccchhhcccc-cccccc--ccccccceeccccccccc
Confidence            9999988844578999999999999988766653   4566677776655 222222  677888888888877554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=2.1e-15  Score=143.44  Aligned_cols=129  Identities=17%  Similarity=0.263  Sum_probs=81.0

Q ss_pred             CccEEEcccCCCCCc--cccHHHHhcCccCcEEEcCC-CCCC-CCCcccccCCCCcEEEcCCCccCC--cccccCCCCCC
Q 009194           60 NLQLFLLYTEGNGPM--QVSDHFFEGMEGLKVLQFPG-IGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE  133 (540)
Q Consensus        60 ~L~~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~l~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~  133 (540)
                      +++.|+++++.. ..  .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.+..  +..+..+.+|+
T Consensus        51 ~v~~L~L~~~~l-~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNL-PKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCC-SSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCC-CCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            566777777665 22  344443 6677777777765 4554 567777777777777777777654  35566677777


Q ss_pred             EEEecCCCCc-ccchhcCCCCCCCEEECCCCccccccchhhhhcCCcc-ceEEccCCCcc
Q 009194          134 ILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQL-EELYMGNGFSG  191 (540)
Q Consensus       134 ~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~~  191 (540)
                      +++++.|.+. .+|..++.+++++++++++|.....+|.. +..+.++ +.+.++.+.+.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccc-ccccccccccccccccccc
Confidence            7777776433 56666777777777777776655556555 4555554 55666655443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.61  E-value=5.8e-14  Score=135.50  Aligned_cols=142  Identities=22%  Similarity=0.240  Sum_probs=98.1

Q ss_pred             CCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEec
Q 009194           59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLA  138 (540)
Q Consensus        59 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~  138 (540)
                      .+++.|++++++.  +.+|.    ..++|++|++++|+++.+|..   ..+|+.|++.++.++....+.  +.|++|+++
T Consensus        38 ~~l~~LdLs~~~L--~~lp~----~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGL--SSLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCC--SCCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECC
T ss_pred             cCCCEEEeCCCCC--CCCCC----CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhhc--ccccccccc
Confidence            3678888888875  56663    357888888888888888864   356888888888776532221  358888888


Q ss_pred             CCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEee
Q 009194          139 YSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIE  218 (540)
Q Consensus       139 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  218 (540)
                      +|.+..+|. ++.+++|++|+++++. ....+.    ....+..+.+..+...          ....++.++.++.+.+.
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~----~~~~l~~l~~~~~~~~----------~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPD----LPPSLEFIAAGNNQLE----------ELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS----------SCCCCTTCTTCCEEECC
T ss_pred             ccccccccc-hhhhccceeecccccc-cccccc----ccccccchhhcccccc----------ccccccccccceecccc
Confidence            888888875 6788888888888776 444433    2345566665544332          22345677888888888


Q ss_pred             cCCCCCCCc
Q 009194          219 VPDAEILPP  227 (540)
Q Consensus       219 ~~~~~~~~~  227 (540)
                      .+.....+.
T Consensus       171 ~n~~~~~~~  179 (353)
T d1jl5a_         171 NNSLKKLPD  179 (353)
T ss_dssp             SSCCSSCCC
T ss_pred             ccccccccc
Confidence            877655443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=2.4e-14  Score=129.06  Aligned_cols=185  Identities=17%  Similarity=0.251  Sum_probs=137.9

Q ss_pred             cCCCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEc
Q 009194           36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL  115 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  115 (540)
                      ..+++.+++.++.++.++.+..+++|++|++++|.+  ..+..  +.+++++++++++++.++.++ .+.++++|+++++
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i--~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI--TDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCcee--ecccc--ccccccccccccccccccccc-ccccccccccccc
Confidence            557888999888888887666888999999988876  33433  578888999998888887765 3678888899888


Q ss_pred             CCCccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccc
Q 009194          116 DWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV  195 (540)
Q Consensus       116 ~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  195 (540)
                      +++.......+...+.++.+.++.+.+...+ .+..+++|++|++++|. +...+.  ++++++|+.|++++|.+.    
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~--l~~l~~L~~L~Ls~n~l~----  186 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS----  186 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred             ccccccccchhccccchhhhhchhhhhchhh-hhccccccccccccccc-cccchh--hcccccceecccCCCccC----
Confidence            8887776666778888888888887776543 36678888888888877 444443  688888888888888664    


Q ss_pred             cCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEE
Q 009194          196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKI  239 (540)
Q Consensus       196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  239 (540)
                            .+..++++++|++|++++|++..++.--..++|+.|.+
T Consensus       187 ------~l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         187 ------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             ------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred             ------CChhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEe
Confidence                  23457788888888888888776653111155555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=7.4e-16  Score=144.07  Aligned_cols=253  Identities=17%  Similarity=0.122  Sum_probs=133.2

Q ss_pred             cEEEcCCCCCCCCCcccccC--CCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCc--ccchhcCCCCCCCEEECCC
Q 009194           88 KVLQFPGIGSSSLPSSLGRL--INLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSN  162 (540)
Q Consensus        88 ~~L~l~~~~~~~l~~~l~~l--~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~  162 (540)
                      +.+|++++.+.  |..++.+  .....+.+..+.+.. ........+|++|++++|.+.  .++..+.++++|++|++++
T Consensus         3 ~~lDLs~~~l~--~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCC--chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            35677666542  1111111  124455555554444 233345556777777766554  3444466677777777777


Q ss_pred             CccccccchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEec
Q 009194          163 CWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIG  242 (540)
Q Consensus       163 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  242 (540)
                      |...+..+.. ++++++|++|++++|...      .+.....-...+++|++|++++|.                     
T Consensus        81 ~~l~~~~~~~-l~~~~~L~~L~Ls~c~~i------td~~l~~l~~~~~~L~~L~ls~c~---------------------  132 (284)
T d2astb2          81 LRLSDPIVNT-LAKNSNLVRLNLSGCSGF------SEFALQTLLSSCSRLDELNLSWCF---------------------  132 (284)
T ss_dssp             CBCCHHHHHH-HTTCTTCSEEECTTCBSC------CHHHHHHHHHHCTTCCEEECCCCT---------------------
T ss_pred             cCCCcHHHHH-HhcCCCCcCccccccccc------cccccchhhHHHHhcccccccccc---------------------
Confidence            6532333333 566667777776665321      011111223445566666665443                     


Q ss_pred             CCCCCCCCccccccccccEEEEeccccccccccchhhhhhhcccceeeecccc-Cccccc-ccCccCCCCccccEEeecc
Q 009194          243 DGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE-GVQSVV-HELDDGEGFPRLKRLLVTD  320 (540)
Q Consensus       243 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~~~~L~~L~l~~  320 (540)
                                                ..+............++|+.|.+.++. .+++.. ..+  ...+|+|++|++++
T Consensus       133 --------------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l--~~~~~~L~~L~L~~  184 (284)
T d2astb2         133 --------------------------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--VRRCPNLVHLDLSD  184 (284)
T ss_dssp             --------------------------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH--HHHCTTCSEEECTT
T ss_pred             --------------------------ccccccchhhhcccccccchhhhccccccccccccccc--cccccccccccccc
Confidence                                      111111011111122445555554432 122110 001  34578888888888


Q ss_pred             ccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEE
Q 009194          321 CSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVK  400 (540)
Q Consensus       321 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~  400 (540)
                      |..++...    ......+++|++|++++|..+++.....   .+.+|+|++|++.+|  +++-........+|+|+   
T Consensus       185 ~~~itd~~----~~~l~~~~~L~~L~L~~C~~i~~~~l~~---L~~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~---  252 (284)
T d2astb2         185 SVMLKNDC----FQEFFQLNYLQHLSLSRCYDIIPETLLE---LGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---  252 (284)
T ss_dssp             CTTCCGGG----GGGGGGCTTCCEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---
T ss_pred             ccCCCchh----hhhhcccCcCCEEECCCCCCCChHHHHH---HhcCCCCCEEeeeCC--CCHHHHHHHHHhCcccc---
Confidence            87665322    1245567889999999888887765544   556899999999988  44432233445566655   


Q ss_pred             Ecccccccccc
Q 009194          401 VEDCDDLKMII  411 (540)
Q Consensus       401 l~~c~~l~~~~  411 (540)
                      + +|..++++.
T Consensus       253 i-~~~~ls~~~  262 (284)
T d2astb2         253 I-NCSHFTTIA  262 (284)
T ss_dssp             E-SCCCSCCTT
T ss_pred             c-cCccCCCCC
Confidence            4 567776653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.4e-14  Score=128.74  Aligned_cols=178  Identities=21%  Similarity=0.286  Sum_probs=133.1

Q ss_pred             EccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC
Q 009194           43 SLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD  122 (540)
Q Consensus        43 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~  122 (540)
                      .+..+.+.+......+.+|+.|+++++.+  ..+..  +..+++|++|++++|.++.++. ++.+++|++|++++|.+++
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i--~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCC--CCchh--HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccc
Confidence            34444443332222567888999998876  44443  4789999999999999888764 6788999999999998888


Q ss_pred             cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccCCCccc
Q 009194          123 IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNAS  202 (540)
Q Consensus       123 ~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  202 (540)
                      +..+.++++|+.|+++++.+..++ .+..+++++.++++++. +...+.  ...+++|+.+++++|.+.          .
T Consensus       105 l~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~-l~~~~~--~~~l~~L~~l~l~~n~l~----------~  170 (210)
T d1h6ta2         105 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS----------D  170 (210)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC----------C
T ss_pred             cccccccccccccccccccccccc-ccccccccccccccccc-cccccc--cccccccccccccccccc----------c
Confidence            667888999999999998877765 47888999999998887 555544  678899999999988765          2


Q ss_pred             hhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEE
Q 009194          203 LVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIR  240 (540)
Q Consensus       203 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~  240 (540)
                      +..++++++|+.|++++|.+..++. +.. ++|+.|+++
T Consensus       171 i~~l~~l~~L~~L~Ls~N~i~~l~~-l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         171 IVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELF  208 (210)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEE
T ss_pred             cccccCCCCCCEEECCCCCCCCChh-hcCCCCCCEEEcc
Confidence            3457888999999999988776653 222 556655553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=4e-15  Score=134.33  Aligned_cols=185  Identities=21%  Similarity=0.320  Sum_probs=138.7

Q ss_pred             CCeEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCC
Q 009194           38 DPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW  117 (540)
Q Consensus        38 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~  117 (540)
                      ++.++++..+.+.++.....+.+|+.|.+.+|.+  .++. + ++++++|++|++++|.+..++. +..+++++++++++
T Consensus        20 ~~~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i--~~l~-~-l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGV--TTIE-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHHTTCSSTTSEECHHHHHTCCEEECTTSCC--CCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS
T ss_pred             HHHHHHhCCCCcCCcCCHHHcCCcCEEECCCCCC--Ccch-h-HhcCCCCcEeecCCceeecccc-cccccccccccccc
Confidence            3455566666665554444788999999999986  4553 3 5889999999999999887654 78999999999999


Q ss_pred             CccCCcccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCcccccccC
Q 009194          118 CELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEG  197 (540)
Q Consensus       118 ~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  197 (540)
                      |.++.+..+.++++|++++++++....++ .+...+.++.+.++.+. +.....  +...++|+.|+++++...      
T Consensus        95 n~~~~i~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~~~~--~~~~~~L~~L~l~~n~~~------  164 (227)
T d1h6ua2          95 NPLKNVSAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVS------  164 (227)
T ss_dssp             CCCSCCGGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCC------
T ss_pred             ccccccccccccccccccccccccccccc-hhccccchhhhhchhhh-hchhhh--hccccccccccccccccc------
Confidence            98888777889999999999988776654 36778899999998877 444433  678889999999888664      


Q ss_pred             CCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEEec
Q 009194          198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIG  242 (540)
Q Consensus       198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~  242 (540)
                          ....++++++|+.|++++|.+..++. +.. ++|+.|+++.+
T Consensus       165 ----~~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         165 ----DLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN  205 (227)
T ss_dssp             ----CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS
T ss_pred             ----cchhhcccccceecccCCCccCCChh-hcCCCCCCEEECcCC
Confidence                22347788999999999988776543 222 55555555433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.58  E-value=5.6e-15  Score=140.44  Aligned_cols=193  Identities=15%  Similarity=0.192  Sum_probs=146.7

Q ss_pred             cCCCeEEEccCCCCC---CCCCcC-CCCCccEEEccc-CCCCCccccHHHHhcCccCcEEEcCCCCCCC-CCcccccCCC
Q 009194           36 QKDPIAISLPHRDIQ---ELPERL-QCPNLQLFLLYT-EGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLIN  109 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~l~~l~~  109 (540)
                      ..++++|+++++.+.   .+|... ++++|++|++++ |.+ ...+|..+ .++++|++|++++|.+.. .+..+..+.+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l-~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-VGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE-ESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc-cccccccc-ccccccchhhhccccccccccccccchhh
Confidence            347999999999885   366644 999999999997 555 55777765 899999999999999976 4566889999


Q ss_pred             CcEEEcCCCccCC--cccccCCCCCCEEEecCCCCc-ccchhcCCCCCC-CEEECCCCccccccchhhhhcCCccceEEc
Q 009194          110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRL-QLLDLSNCWWLEVIAPNVISKLSQLEELYM  185 (540)
Q Consensus       110 L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L-~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  185 (540)
                      |+++++++|.+..  |..++++++|+++++++|.+. .+|..+..+.++ +.++++++......+.. ++.+..+ .+++
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~~-~l~l  204 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNLA-FVDL  204 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCCS-EEEC
T ss_pred             hcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-ccccccc-cccc
Confidence            9999999998665  789999999999999999887 788888888876 88999998855555544 6666544 6777


Q ss_pred             cCCCcccccccCCCccchhhccCCCCccEEEeecCCCCCCCccccc-cCccEEEEE
Q 009194          186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIR  240 (540)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~  240 (540)
                      ..+...        ...+..+..+++|+.+++..+.....+..+.. ++|+.|.++
T Consensus       205 ~~~~~~--------~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls  252 (313)
T d1ogqa_         205 SRNMLE--------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR  252 (313)
T ss_dssp             CSSEEE--------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECC
T ss_pred             cccccc--------ccccccccccccccccccccccccccccccccccccccccCc
Confidence            766543        12345567788999999988875544433322 455555553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.1e-15  Score=142.95  Aligned_cols=164  Identities=20%  Similarity=0.165  Sum_probs=91.3

Q ss_pred             cccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChHHHhhcccccEEEEcccccccccccc--
Q 009194          336 CEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGP--  413 (540)
Q Consensus       336 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--  413 (540)
                      ...+++|++|.+.+|. +.+.....   .+.+++|++|++++|..+++......+..+++|++|++++|.++++....  
T Consensus        67 ~~~c~~L~~L~L~~~~-l~~~~~~~---l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~  142 (284)
T d2astb2          67 LSQCSKLQNLSLEGLR-LSDPIVNT---LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA  142 (284)
T ss_dssp             HTTBCCCSEEECTTCB-CCHHHHHH---HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred             HHhCCCcccccccccC-CCcHHHHH---HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhh
Confidence            3445566666666553 33222221   33455666666666655554332333445566666666666555432210  


Q ss_pred             CCCCCCCccceeeecccCCCC-----CCCccCCCCccEEEEccCCCcccccchhhhhhcCCCcEEEEecccccceecccc
Q 009194          414 DMEKPPTTQGFIEINAEDDPV-----HQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTT  488 (540)
Q Consensus       414 ~~~~~~~l~~l~~i~~~~~~~-----~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~~~l~~L~~L~i~~C~~L~~~~~~~  488 (540)
                      .....+.+..+ .+.+|....     ......+++|++|++++|+.+++... ..+.++++|++|++++|..+++...  
T Consensus       143 ~~~~~~~L~~L-~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~-~~l~~~~~L~~L~L~~C~~i~~~~l--  218 (284)
T d2astb2         143 VAHVSETITQL-NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETL--  218 (284)
T ss_dssp             HHHSCTTCCEE-ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGG--
T ss_pred             hcccccccchh-hhcccccccccccccccccccccccccccccccCCCchhh-hhhcccCcCCEEECCCCCCCChHHH--
Confidence            00111333333 333332111     11223578999999999998887643 3356789999999999988776422  


Q ss_pred             ccCCCCccccccccceeecccCCC
Q 009194          489 TLGGRDEFKVFPKLHYLSLHWLPK  512 (540)
Q Consensus       489 ~~~~~~~~~~~~~L~~L~l~~~p~  512 (540)
                        .   .+..+|+|+.|++.+|-.
T Consensus       219 --~---~L~~~~~L~~L~l~~~~~  237 (284)
T d2astb2         219 --L---ELGEIPTLKTLQVFGIVP  237 (284)
T ss_dssp             --G---GGGGCTTCCEEECTTSSC
T ss_pred             --H---HHhcCCCCCEEeeeCCCC
Confidence              1   134688999999988833

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4e-13  Score=125.41  Aligned_cols=192  Identities=18%  Similarity=0.193  Sum_probs=147.8

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCC-cccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~  118 (540)
                      ..++.++..+..+|..+ .+++++|++++|.+  ..++...|.+++.|++|+++++.+..++ ..+..+..++.+.....
T Consensus        14 ~~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCCCC-CCCCCEEECcCCcC--CCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34566777778887643 25789999999987  6777777899999999999999987654 45577888999887655


Q ss_pred             c-cCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCccccc
Q 009194          119 E-LAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK  194 (540)
Q Consensus       119 ~-~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  194 (540)
                      . ++.  +..+.++++|++|++++|.+..++.. +..+.+|+.++++++. +..++...+..+++|++|++++|.+... 
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l-  168 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV-  168 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCccccc-
Confidence            4 665  57889999999999999988766544 7778999999999988 7788777688899999999999887621 


Q ss_pred             ccCCCccchhhccCCCCccEEEeecCCCCCCCccc-cc-cCccEEEEEecC
Q 009194          195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VS-VELQRYKIRIGD  243 (540)
Q Consensus       195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~~~  243 (540)
                             ....+.++++|+.+++..|....+.... .. ++|+.|.++...
T Consensus       169 -------~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         169 -------PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             -------CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             -------chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence                   2345778899999999999876654432 22 556666554443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=8.2e-13  Score=105.91  Aligned_cols=101  Identities=24%  Similarity=0.250  Sum_probs=61.0

Q ss_pred             cEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEECCCCccc
Q 009194           88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWL  166 (540)
Q Consensus        88 ~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~  166 (540)
                      |+|++++|.++.++. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| +++.+++|++|++++|. +
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-L   77 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-C
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-c
Confidence            456666666665553 5666666666666666666 455666666666666666666664 36666666666666665 4


Q ss_pred             cccch-hhhhcCCccceEEccCCCcc
Q 009194          167 EVIAP-NVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       167 ~~~~~-~~l~~l~~L~~L~l~~~~~~  191 (540)
                      ..++. ..++.+++|+.|++++|.+.
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCC
Confidence            44332 22556666666666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=8.3e-13  Score=105.87  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=84.0

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCC
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSN  141 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~  141 (540)
                      |.|++++|.+  ..++.  +.++++|++|++++|.++.+|..++.+++|++|++++|.++.++.++++++|++|++++|.
T Consensus         1 R~L~Ls~n~l--~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCC--CCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCc
Confidence            5677777775  44443  4677888888888888888877778888888888888888775567888888888888888


Q ss_pred             Ccccch--hcCCCCCCCEEECCCCccc--cccchhhhhcCCccceE
Q 009194          142 INQLPV--EIGQLTRLQLLDLSNCWWL--EVIAPNVISKLSQLEEL  183 (540)
Q Consensus       142 ~~~lp~--~~~~l~~L~~L~l~~~~~~--~~~~~~~l~~l~~L~~L  183 (540)
                      +..+|.  .+..+++|++|++++|...  ...+..++..+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            776653  4677888888888887632  22334444556666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.9e-13  Score=114.31  Aligned_cols=127  Identities=16%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             CCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-c-ccccCCC
Q 009194           53 PERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLK  130 (540)
Q Consensus        53 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~  130 (540)
                      +.+.++.++|+|++++|.+  ..++ +.+..+++|++|++++|.+..++ .+..+++|++|++++|.++. + ..+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I--~~i~-~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKI--PVIE-NLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCC--CSCC-CGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCC--CccC-ccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccc
Confidence            3333445555555555554  3332 22344555555555555555443 24455555555555555554 2 2234455


Q ss_pred             CCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccch---hhhhcCCccceEE
Q 009194          131 KLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAP---NVISKLSQLEELY  184 (540)
Q Consensus       131 ~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~  184 (540)
                      +|+.|++++|.+..++.  .+..+++|++|++++|. +...+.   .++..+++|+.|+
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            55555555555554432  24455555555555554 333331   2244455555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.5e-13  Score=114.72  Aligned_cols=107  Identities=16%  Similarity=0.125  Sum_probs=58.0

Q ss_pred             cCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCCcccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECC
Q 009194           83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLS  161 (540)
Q Consensus        83 ~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~  161 (540)
                      ++..+|.|++++|.++.++..+..+++|++|++++|.++..+.+..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            445555666666665555544445555666666666555544455555666666666655555543 2345566666665


Q ss_pred             CCccccccch-hhhhcCCccceEEccCCCc
Q 009194          162 NCWWLEVIAP-NVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       162 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  190 (540)
                      +|. +..++. ..+..+++|++|++++|.+
T Consensus        96 ~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          96 NNS-LVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             SCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ccc-ccccccccccccccccchhhcCCCcc
Confidence            555 333322 1245555566666655544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.33  E-value=1.1e-12  Score=114.44  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=100.0

Q ss_pred             eEEEccCCCCCCCCCcCCCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCC-CcccccCCCCcEEEcCCC
Q 009194           40 IAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSL-PSSLGRLINLQTLCLDWC  118 (540)
Q Consensus        40 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~  118 (540)
                      ++++.+++.+..+|..+ .+++++|++++|.+ ........|.++++|+.|++++|.+..+ +..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i-~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCC-CCCCCEEEeCCCCC-cccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            46788888888887643 26789999999987 4445566678899999999999988764 456778889999999999


Q ss_pred             ccCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEECCCCcc
Q 009194          119 ELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWW  165 (540)
Q Consensus       119 ~~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~  165 (540)
                      .++.  +..|.++++|++|++++|.++.+|.. +..+++|++++++++..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            9887  46788899999999999999887765 78889999999988873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.6e-11  Score=111.38  Aligned_cols=102  Identities=19%  Similarity=0.235  Sum_probs=70.1

Q ss_pred             cEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-c-ccccCCCCCCEEEecCCCCcc-cch-hcCCCCCCCEEECCCC
Q 009194           88 KVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQ-LPV-EIGQLTRLQLLDLSNC  163 (540)
Q Consensus        88 ~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~~~~-lp~-~~~~l~~L~~L~l~~~  163 (540)
                      ++++.++..++.+|..+.  +++++|++++|.++. + ..+.++++|++|++++|.+.. ++. .+.++++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            567777777777776542  468888888888776 4 467788888888888886653 333 3677788888876654


Q ss_pred             ccccccchhhhhcCCccceEEccCCCcc
Q 009194          164 WWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       164 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      ..+...+...+..+++|+++++.++.+.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccchhhhc
Confidence            4355555554667777777777766554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.4e-14  Score=143.52  Aligned_cols=401  Identities=16%  Similarity=0.067  Sum_probs=192.3

Q ss_pred             CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-----CCcccccCCCCcEEEcCCCccCC--ccccc-----
Q 009194           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD--IAAIG-----  127 (540)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~--~~~i~-----  127 (540)
                      +|++|+++++.+ .......++..++++++|++.+|.++.     +...+..+++|++|++++|.+++  ...+.     
T Consensus         3 ~l~~ld~~~~~i-~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEEL-SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCC-CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcC-ChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            577788888777 444445566778888888888887752     44556778888888888887753  22222     


Q ss_pred             CCCCCCEEEecCCCCcc-----cchhcCCCCCCCEEECCCCccccccchhhhh-----cCCccceEEccCCCcccccccC
Q 009194          128 QLKKLEILSLAYSNINQ-----LPVEIGQLTRLQLLDLSNCWWLEVIAPNVIS-----KLSQLEELYMGNGFSGWEKVEG  197 (540)
Q Consensus       128 ~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~  197 (540)
                      ...+|++|++++|.++.     ++..+..+++|++|++++|. ++..+...+.     ................    ..
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~  156 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS----AA  156 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCB----GG
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccc----hh
Confidence            23478888888887762     45567778888888888876 3332211111     1112222332222211    00


Q ss_pred             CCccchhhccCCCCccEEEeecCCCCCCCccccccCccEEEEEecCCCCCCCCccccccccccEEEEeccccc-cccccc
Q 009194          198 GSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKV-SILQEN  276 (540)
Q Consensus       198 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~  276 (540)
                      ........+.....++.+.+..+.............+.                  ........+.+..+... ......
T Consensus       157 ~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~------------------~~~~~~~~l~~~~~~~~~~~~~~~  218 (460)
T d1z7xw1         157 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK------------------DSPCQLEALKLESCGVTSDNCRDL  218 (460)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH------------------HSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             hhcccccccccccccccccccccccccccccccccccc------------------cccccccccccccccccchhhhcc
Confidence            01122233455567777777655432111000000000                  00001112222221000 000000


Q ss_pred             hhhhhhhcccceeeeccccCccccccc--CccCCCCccccEEeeccccCceeeeccccccccccCcccceeccccccccc
Q 009194          277 DGTKMLLQRTEDLWLETLEGVQSVVHE--LDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE  354 (540)
Q Consensus       277 ~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  354 (540)
                      .......+.++.+.+.+..........  .......+.++.++++++. +...............+.++.+++.+++ +.
T Consensus       219 ~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~  296 (460)
T d1z7xw1         219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LG  296 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CH
T ss_pred             cccccccccccccchhhccccccccchhhccccccccccccccccccc-cccccccccccccccccccccccccccc-cc
Confidence            011112244555555443321110000  0013345677788877763 2211111111123345667777776532 32


Q ss_pred             ccccccCCC--CCCCCCCCeEEEeeCCCCccccCh---HHHhhcccccEEEEccccccccccccCCCCCCCccceeeecc
Q 009194          355 TICYSQLRE--DQSFSNLRIINVDSCRKLKYLFSF---SMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINA  429 (540)
Q Consensus       355 ~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~  429 (540)
                      +.....+..  ....+.|+.+.+++|. +......   ......++|++|+++++ .+++.+....              
T Consensus       297 ~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l--------------  360 (460)
T d1z7xw1         297 DEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL--------------  360 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHH--------------
T ss_pred             ccccchhhccccccccccccccccccc-hhhhhhhhcccccccccchhhhheeee-cccCcccchh--------------
Confidence            211110000  2234678888888873 4433211   12345568888888875 4554321100              


Q ss_pred             cCCCCCCCc-cCCCCccEEEEccCCCcccccch---hhhhhcCCCcEEEEecccccceeccccccCCCCcccccccccee
Q 009194          430 EDDPVHQGI-YCCQNLTKVTVWSCHRLKYLFSY---SMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYL  505 (540)
Q Consensus       430 ~~~~~~~~~-~~~~~L~~L~l~~C~~l~~l~~~---~~~~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L  505 (540)
                           ...+ ...+.|++|++++| .+++.+..   ..+..+++|++|++++. .+++... ..+....+ .....|+.|
T Consensus       361 -----~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~-~~l~~~l~-~~~~~L~~l  431 (460)
T d1z7xw1         361 -----CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGI-LQLVESVR-QPGCLLEQL  431 (460)
T ss_dssp             -----HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHH-HHHHHHHT-STTCCCCEE
T ss_pred             -----hhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHH-HHHHHHHH-hCCCccCEE
Confidence                 0001 13467888888888 56653222   23456688888888875 3433110 00000000 022357888


Q ss_pred             ecccCC
Q 009194          506 SLHWLP  511 (540)
Q Consensus       506 ~l~~~p  511 (540)
                      .+.++.
T Consensus       432 ~l~~~~  437 (460)
T d1z7xw1         432 VLYDIY  437 (460)
T ss_dssp             ECTTCC
T ss_pred             ECCCCC
Confidence            877654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.7e-11  Score=109.83  Aligned_cols=82  Identities=15%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             CccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-C-CcccccCCCCcEEEcCCC-ccCC--cccccCCCCCCE
Q 009194           60 NLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-L-PSSLGRLINLQTLCLDWC-ELAD--IAAIGQLKKLEI  134 (540)
Q Consensus        60 ~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~l~~l~~L~~L~l~~~-~~~~--~~~i~~l~~L~~  134 (540)
                      ++++|++++|.+  ..++...|.++++|++|++++|.+.. + +..+.++++++++.+..+ .+..  +..+.++++|++
T Consensus        30 ~l~~L~Ls~n~i--~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCC--CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcC--CccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            344444444443  33333333444444444444444332 1 122344444444444332 2222  233444444444


Q ss_pred             EEecCCCCc
Q 009194          135 LSLAYSNIN  143 (540)
Q Consensus       135 L~l~~~~~~  143 (540)
                      ++++++.+.
T Consensus       108 l~l~~~~l~  116 (242)
T d1xwdc1         108 LLISNTGIK  116 (242)
T ss_dssp             EEEESCCCC
T ss_pred             cccchhhhc
Confidence            444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=1.9e-11  Score=106.54  Aligned_cols=123  Identities=17%  Similarity=0.169  Sum_probs=72.7

Q ss_pred             cEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCC-C-CcccccCCCCcEEEcCCCccCC--cccccCCCCCCEEEe
Q 009194           62 QLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-L-PSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSL  137 (540)
Q Consensus        62 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l  137 (540)
                      ++++.+++..  ..+|.++   .+++++|++++|.++. + +..+.++++|++|++++|.+..  +..+..+++|++|++
T Consensus        11 ~~v~Cs~~~L--~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          11 TTVDCTGRGL--KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TEEECTTSCC--SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEEEeCCCc--CccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3455555554  4555433   2456666666666643 3 2345666666666666666554  356666666666666


Q ss_pred             cCCCCcccchh-cCCCCCCCEEECCCCccccccchhhhhcCCccceEEccCCCc
Q 009194          138 AYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       138 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  190 (540)
                      ++|+++.+|.. +.++++|++|++++|. +..++.+++..+++|+++++++|.+
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence            66666655543 5666666666666665 5556555555666666666665544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=1.3e-12  Score=114.16  Aligned_cols=106  Identities=23%  Similarity=0.272  Sum_probs=48.0

Q ss_pred             hcCccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCccCC-cccccCCCCCCEEEecCCCCcccchhcCCCCCCCEEEC
Q 009194           82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL  160 (540)
Q Consensus        82 ~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l  160 (540)
                      +.+++|++|++++|.++.++ .+..+++|++|++++|.++. +.....+++|++|++++|.++.++ .+..+++|++|++
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEEEE
T ss_pred             hcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence            44555555555555444443 24445555555555554444 222223334555555555444442 2444455555555


Q ss_pred             CCCccccccch-hhhhcCCccceEEccCCCc
Q 009194          161 SNCWWLEVIAP-NVISKLSQLEELYMGNGFS  190 (540)
Q Consensus       161 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~  190 (540)
                      ++|. +..++. ..++.+++|+.|++++|.+
T Consensus       123 ~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         123 SNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEE-CCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccch-hccccccccccCCCccceeecCCCcc
Confidence            5444 333321 1144455555555554433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=7.4e-13  Score=115.85  Aligned_cols=145  Identities=19%  Similarity=0.258  Sum_probs=112.4

Q ss_pred             cCCCeEEEccCC--CCCCCCCcC-CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCcccccCCCCcE
Q 009194           36 QKDPIAISLPHR--DIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQT  112 (540)
Q Consensus        36 ~~~l~~l~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~l~~l~~L~~  112 (540)
                      ....+.+++.+.  .++.++... .+++|+.|++++|.+  .+++.  +.++++|++|++++|.+..+|.....+++|++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I--~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~   97 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEE   97 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEE--SCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCE
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCC--CCccc--ccCCccccChhhcccccccccccccccccccc
Confidence            344666777654  235554433 789999999999986  45543  58899999999999999988876667778999


Q ss_pred             EEcCCCccCCcccccCCCCCCEEEecCCCCcccch--hcCCCCCCCEEECCCCccccccch---------hhhhcCCccc
Q 009194          113 LCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDLSNCWWLEVIAP---------NVISKLSQLE  181 (540)
Q Consensus       113 L~l~~~~~~~~~~i~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~---------~~l~~l~~L~  181 (540)
                      |++++|.++.++.+..+++|++|++++|.++.++.  .+..+++|++|++++|......+.         .++..+++|+
T Consensus        98 L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_          98 LWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             EECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             cccccccccccccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            99999999887678899999999999999987764  589999999999999873222211         1256677888


Q ss_pred             eEE
Q 009194          182 ELY  184 (540)
Q Consensus       182 ~L~  184 (540)
                      .|+
T Consensus       178 ~LD  180 (198)
T d1m9la_         178 KLD  180 (198)
T ss_dssp             EES
T ss_pred             EeC
Confidence            776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.1e-12  Score=129.08  Aligned_cols=193  Identities=12%  Similarity=0.015  Sum_probs=100.3

Q ss_pred             CCccccEEeeccccCceeeeccccccccccCcccceecccccccccccccccCCCCCCCCCCCeEEEeeCCCCccccChH
Q 009194          309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS  388 (540)
Q Consensus       309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  388 (540)
                      ..+.++.+.+.++..................+.++.++++++.--..............+.++.+.+.++ .+++.....
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n-~i~~~~~~~  302 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARL  302 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccc-cccccccch
Confidence            4567777777766321110000011133445678888887754221111000000234567777777765 343321111


Q ss_pred             HH----hhcccccEEEEccccccccccccCCCCCCCccceeeecccCCCCCCCccCCCCccEEEEccCCCcccccchhhh
Q 009194          389 MA----KNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQGIYCCQNLTKVTVWSCHRLKYLFSYSMV  464 (540)
Q Consensus       389 ~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~  464 (540)
                      ..    ...+.|+.+.+++|. ++.....         .          +.......++|++|+++++ .+++-+...+.
T Consensus       303 l~~~l~~~~~~L~~l~l~~~~-l~~~~~~---------~----------l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~  361 (460)
T d1z7xw1         303 LCETLLEPGCQLESLWVKSCS-FTAACCS---------H----------FSSVLAQNRFLLELQISNN-RLEDAGVRELC  361 (460)
T ss_dssp             HHHHHTSTTCCCCEEECTTSC-CBGGGHH---------H----------HHHHHHHCSSCCEEECCSS-BCHHHHHHHHH
T ss_pred             hhccccccccccccccccccc-hhhhhhh---------h----------cccccccccchhhhheeee-cccCcccchhh
Confidence            11    123567888887764 3322100         0          0011224578999999987 46653322222


Q ss_pred             ----hhcCCCcEEEEecccccceeccccccCCCCccccccccceeecccCCCCC-------------CCCCCCceEeecC
Q 009194          465 ----NSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLS-------------SFASPEDVIHTEM  527 (540)
Q Consensus       465 ----~~l~~L~~L~i~~C~~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~p~L~-------------~~~~l~~l~i~~c  527 (540)
                          ...+.|++|++++| .+++... ..+.  ..+..+++|++|+|++.+ ++             ..+.|+.+.+.++
T Consensus       362 ~~l~~~~~~L~~L~Ls~n-~i~~~~~-~~l~--~~l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         362 QGLGQPGSVLRVLWLADC-DVSDSSC-SSLA--ATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             HHHTSTTCCCCEEECTTS-CCCHHHH-HHHH--HHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred             hhhhcccCCCCEEECCCC-CCChHHH-HHHH--HHHhcCCCCCEEECCCCc-CCHHHHHHHHHHHHhCCCccCEEECCCC
Confidence                34577999999999 4554211 0000  013357999999999874 32             2246888888776


Q ss_pred             C
Q 009194          528 Q  528 (540)
Q Consensus       528 ~  528 (540)
                      +
T Consensus       437 ~  437 (460)
T d1z7xw1         437 Y  437 (460)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.4e-09  Score=86.40  Aligned_cols=101  Identities=23%  Similarity=0.157  Sum_probs=56.7

Q ss_pred             ccEEEcccCCCCCccccHHHHhcCccCcEEEcCCC-CCCCCC-cccccCCCCcEEEcCCCccCC--cccccCCCCCCEEE
Q 009194           61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI-GSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILS  136 (540)
Q Consensus        61 L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~-~~l~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~  136 (540)
                      ...+...++..  .+.+..+ ..+++|++|++.++ .++.++ ..|.++++|++|++++|.++.  +..+..+++|++|+
T Consensus        10 ~~~l~c~~~~~--~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTRDGA--LDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCSSCC--CTTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCeEEecCCCC--ccCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34444444443  3333332 45556666666544 355544 345666666666666666655  35566666666666


Q ss_pred             ecCCCCcccchhcCCCCCCCEEECCCCc
Q 009194          137 LAYSNINQLPVEIGQLTRLQLLDLSNCW  164 (540)
Q Consensus       137 l~~~~~~~lp~~~~~l~~L~~L~l~~~~  164 (540)
                      +++|+++.+|..+....+|++|++++|.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccCCCCcccChhhhccccccccccCCCc
Confidence            6666666666654444456666666655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.3e-08  Score=84.55  Aligned_cols=106  Identities=21%  Similarity=0.172  Sum_probs=84.5

Q ss_pred             CccCcEEEcCCCCCCCCCcccccCCCCcEEEcCCCc-cCC--cccccCCCCCCEEEecCCCCcccchh-cCCCCCCCEEE
Q 009194           84 MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE-LAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLD  159 (540)
Q Consensus        84 l~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~-~~~--~~~i~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~  159 (540)
                      +.....++..++.....|..+..+++|++|++.++. ++.  +..|.++++|+.|++++|.++.++.. +..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            344566888888888888888888999999997765 776  46788999999999999999887544 88899999999


Q ss_pred             CCCCccccccchhhhhcCCccceEEccCCCcc
Q 009194          160 LSNCWWLEVIAPNVISKLSQLEELYMGNGFSG  191 (540)
Q Consensus       160 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  191 (540)
                      +++|. +..++...+. ..+|+.|++++|.+.
T Consensus        87 Ls~N~-l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNA-LESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSC-CSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ccCCC-CcccChhhhc-cccccccccCCCccc
Confidence            99988 7788877444 346888888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.75  E-value=2.9e-09  Score=101.60  Aligned_cols=183  Identities=13%  Similarity=0.041  Sum_probs=89.9

Q ss_pred             cCCCeEEEccCCCCCC-----CCC-cCCCCCccEEEcccCCCCC--ccc------cHHHHhcCccCcEEEcCCCCCCC--
Q 009194           36 QKDPIAISLPHRDIQE-----LPE-RLQCPNLQLFLLYTEGNGP--MQV------SDHFFEGMEGLKVLQFPGIGSSS--   99 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~~~--~~~------~~~~~~~l~~L~~L~l~~~~~~~--   99 (540)
                      ...++.|++++|.+..     +.. ....++|+.+.+.++....  ...      ....+..+++|+.|++++|.+..  
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            3456677777665521     111 2255666677666554310  011      11223456667777776666543  


Q ss_pred             ---CCcccccCCCCcEEEcCCCccCC--ccc-------------ccCCCCCCEEEecCCCCc-----ccchhcCCCCCCC
Q 009194          100 ---LPSSLGRLINLQTLCLDWCELAD--IAA-------------IGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQ  156 (540)
Q Consensus       100 ---l~~~l~~l~~L~~L~l~~~~~~~--~~~-------------i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~  156 (540)
                         +...+...++|++|++++|.+..  ...             ....+.|+.+.++++.+.     .+...+...++|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               23334456666777776665431  111             123456666666666543     2333344556666


Q ss_pred             EEECCCCccccc----cchhhhhcCCccceEEccCCCcccccccCCCccchhhccCCCCccEEEeecCCC
Q 009194          157 LLDLSNCWWLEV----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA  222 (540)
Q Consensus       157 ~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  222 (540)
                      +|++++|.....    .....+..+++|+.|++++|.+....    .......+..+++|++|++++|.+
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g----~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccc----cccccccccccccchhhhhhcCcc
Confidence            666666552111    01112345566666666665543110    112233445566666666666653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.64  E-value=1.2e-08  Score=97.22  Aligned_cols=206  Identities=17%  Similarity=0.202  Sum_probs=133.1

Q ss_pred             cCCCeEEEccCCCCCCCC-----------C-cCCCCCccEEEcccCCCCCcc--ccHHHHhcCccCcEEEcCCCCCCC--
Q 009194           36 QKDPIAISLPHRDIQELP-----------E-RLQCPNLQLFLLYTEGNGPMQ--VSDHFFEGMEGLKVLQFPGIGSSS--   99 (540)
Q Consensus        36 ~~~l~~l~l~~~~~~~l~-----------~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~--   99 (540)
                      .+.++.++++++......           . ...+++|++|++++|.+....  .....+..+++|++|++++|.+..  
T Consensus        58 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          58 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccc
Confidence            578899999876543221           1 226788999999998762211  123345678899999999987632  


Q ss_pred             ---CCcc---------cccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCcc------cchhcCCCCCC
Q 009194          100 ---LPSS---------LGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQ------LPVEIGQLTRL  155 (540)
Q Consensus       100 ---l~~~---------l~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~~------lp~~~~~l~~L  155 (540)
                         +...         ....+.|+++.++++.+..  .    ..+...++|+.|++++|.+..      +...+..+++|
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L  217 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  217 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             cccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhh
Confidence               1111         1356788999999888763  1    345678899999999987762      33446778899


Q ss_pred             CEEECCCCccccc----cchhhhhcCCccceEEccCCCcccccccCCCccchhhccC--CCCccEEEeecCCCCC-----
Q 009194          156 QLLDLSNCWWLEV----IAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELER--LTELTTLEIEVPDAEI-----  224 (540)
Q Consensus       156 ~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~~-----  224 (540)
                      ++|++++|.....    +... +..+++|++|++++|.+....    .......+..  .+.|++|++++|.++.     
T Consensus       218 ~~L~Ls~N~i~~~g~~~L~~~-l~~~~~L~~L~Ls~n~i~~~g----~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~  292 (344)
T d2ca6a1         218 KVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLSARG----AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT  292 (344)
T ss_dssp             CEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHHH----HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred             ccccccccccccccccccccc-ccccccchhhhhhcCccCchh----hHHHHHHhhhccCCCCCEEECCCCcCChHHHHH
Confidence            9999998873221    2222 567888999999998765211    1122333333  3569999999987543     


Q ss_pred             CCccccc--cCccEEEEEecCCCC
Q 009194          225 LPPDFVS--VELQRYKIRIGDGPE  246 (540)
Q Consensus       225 ~~~~~~~--~~L~~L~l~~~~~~~  246 (540)
                      +...+..  ++|+.|.++...+..
T Consensus       293 l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         293 LKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHccCCCCCEEECCCCcCCC
Confidence            2222221  678888886554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=6.5e-06  Score=68.15  Aligned_cols=83  Identities=23%  Similarity=0.095  Sum_probs=54.8

Q ss_pred             cHHHHhcCccCcEEEcCCCCCCCCC---cccccCCCCcEEEcCCCccCCccc--ccCCCCCCEEEecCCCCcccc-----
Q 009194           77 SDHFFEGMEGLKVLQFPGIGSSSLP---SSLGRLINLQTLCLDWCELADIAA--IGQLKKLEILSLAYSNINQLP-----  146 (540)
Q Consensus        77 ~~~~~~~l~~L~~L~l~~~~~~~l~---~~l~~l~~L~~L~l~~~~~~~~~~--i~~l~~L~~L~l~~~~~~~lp-----  146 (540)
                      ...++.+++.|++|++++|.++.++   ..+..+++|++|++++|.+++...  ..+..+|+.|++++|.+....     
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            3445567888999999998887653   345678888888888888877322  223446788888887665321     


Q ss_pred             ---hhcCCCCCCCEEE
Q 009194          147 ---VEIGQLTRLQLLD  159 (540)
Q Consensus       147 ---~~~~~l~~L~~L~  159 (540)
                         ..+..+++|++||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               1244556666665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.20  E-value=0.00023  Score=58.79  Aligned_cols=60  Identities=12%  Similarity=0.092  Sum_probs=27.2

Q ss_pred             cccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCc-----ccchhcCCCCCCCEEECCCC
Q 009194          104 LGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNC  163 (540)
Q Consensus       104 l~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~  163 (540)
                      +...++|++|++++|.+.+  .    ..+...+.|+.|++++|.+.     .+-..+...+.|++|+++++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3344445555555554432  1    23334445555555555444     22223444455555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=8.3e-05  Score=61.22  Aligned_cols=80  Identities=23%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             CCCCccEEEcccCCCCCccccHHHHhcCccCcEEEcCCCCCCCCCc-ccccCCCCcEEEcCCCccCC-c--------ccc
Q 009194           57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD-I--------AAI  126 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~-~--------~~i  126 (540)
                      .++.|++|++++|.+.........+..+++|++|++++|.++.++. ......+|+.|++.+|.+.. .        ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            5889999999999972222234456889999999999999988765 22345579999999998764 1        236


Q ss_pred             cCCCCCCEEE
Q 009194          127 GQLKKLEILS  136 (540)
Q Consensus       127 ~~l~~L~~L~  136 (540)
                      ..+++|++||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            6789999985

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.03  E-value=0.00023  Score=58.72  Aligned_cols=107  Identities=8%  Similarity=-0.018  Sum_probs=71.0

Q ss_pred             CCCCccEEEcccCCCCCcccc---HHHHhcCccCcEEEcCCCCCCC-----CCcccccCCCCcEEEcCCCccCC--c---
Q 009194           57 QCPNLQLFLLYTEGNGPMQVS---DHFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD--I---  123 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~--~---  123 (540)
                      +.+.|++|+++++.....+..   ...+...+.|++|++++|.+..     +...+...+.|++|++++|.+..  .   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            457788888876432133222   2234567888999998888752     33455667889999999998774  2   


Q ss_pred             -ccccCCCCCCEEEecCCCCcc--------cchhcCCCCCCCEEECCCC
Q 009194          124 -AAIGQLKKLEILSLAYSNINQ--------LPVEIGQLTRLQLLDLSNC  163 (540)
Q Consensus       124 -~~i~~l~~L~~L~l~~~~~~~--------lp~~~~~l~~L~~L~l~~~  163 (540)
                       ..+...+.|++|+++++.+..        +...+..-++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence             567777889999998875443        3333445667777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.73  E-value=0.00064  Score=55.92  Aligned_cols=83  Identities=13%  Similarity=0.094  Sum_probs=40.7

Q ss_pred             HHHHhcCccCcEEEcCCC-CCCC-----CCcccccCCCCcEEEcCCCccCC--c----ccccCCCCCCEEEecCCCCc--
Q 009194           78 DHFFEGMEGLKVLQFPGI-GSSS-----LPSSLGRLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNIN--  143 (540)
Q Consensus        78 ~~~~~~l~~L~~L~l~~~-~~~~-----l~~~l~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~~~--  143 (540)
                      ..+..+.+.|++|++.++ .++.     +-..+...++|++|++++|.+..  .    ..+...+.++.++++++.+.  
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            334445566666666552 3321     22334455566666666665543  1    23344555666666555443  


Q ss_pred             ---ccchhcCCCCCCCEEEC
Q 009194          144 ---QLPVEIGQLTRLQLLDL  160 (540)
Q Consensus       144 ---~lp~~~~~l~~L~~L~l  160 (540)
                         .+...+...++|+.+++
T Consensus        90 g~~~l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEEC
T ss_pred             hHHHHHHHHHhCccccEEee
Confidence               22233444555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.36  E-value=0.0021  Score=52.60  Aligned_cols=108  Identities=16%  Similarity=0.109  Sum_probs=69.6

Q ss_pred             CCCCccEEEcccCCCCCcccc---HHHHhcCccCcEEEcCCCCCCC-----CCcccccCCCCcEEEcCCCccCC------
Q 009194           57 QCPNLQLFLLYTEGNGPMQVS---DHFFEGMEGLKVLQFPGIGSSS-----LPSSLGRLINLQTLCLDWCELAD------  122 (540)
Q Consensus        57 ~~~~L~~L~l~~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~~~~------  122 (540)
                      +.+.|++|+++++........   ...+...++|++|++++|.++.     +-..+...+.++.++++++.+..      
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            456777777776432133322   2233467888888888887753     34455667888899988888653      


Q ss_pred             cccccCCCCCCEEEecC--CCCc-----ccchhcCCCCCCCEEECCCCc
Q 009194          123 IAAIGQLKKLEILSLAY--SNIN-----QLPVEIGQLTRLQLLDLSNCW  164 (540)
Q Consensus       123 ~~~i~~l~~L~~L~l~~--~~~~-----~lp~~~~~l~~L~~L~l~~~~  164 (540)
                      ...+...++|+.+++..  +.+.     .+...+...++|++|++..+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            16667788888877754  3443     344455667777777776543